0.033921
0.000000
0.003235
0.000000
0.017539
0.000000
0.000000
0.000000
0.029559
0.00000
0.00000
0.00000
Kristariyanto, Y.A.
Abdul Rehman, S.A.
Choi, S.Y.
Ritorto, S.
Campbell, D.G.
Morrice, N.A.
Toth, R.
Kulathu, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
95.45
90.00
29.480
57.017
33.984
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
C
N
97
N
C
N
98
N
O
N
99
N
N
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
Y
145
N
C
Y
146
N
N
Y
147
N
C
Y
148
N
C
Y
149
N
N
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
S
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
I
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
N
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
S
N
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
N
367
N
O
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
Y
142
N
sing
Y
143
N
doub
Y
144
N
doub
N
145
N
sing
Y
146
N
sing
N
147
N
sing
Y
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
Y
280
N
doub
Y
281
N
sing
Y
282
N
sing
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
UK
Biochem.J.
BIJOAK
0043
1470-8728
467
345
352
10.1042/BJ20141502
25723849
Assembly and structure of Lys33-linked polyubiquitin reveals distinct conformations.
2015
10.2210/pdb4xyz/pdb
pdb_00004xyz
100
1
PIXEL
2014-02-24
DECTRIS PILATUS 6M-F
SINGLE WAVELENGTH
M
x-ray
1
0.999
1.0
ID29
ESRF
0.999
SYNCHROTRON
ESRF BEAMLINE ID29
8576.831
Polyubiquitin-C
UNP residues 77-152
2
nat
polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
126.904
IODIDE ION
1
syn
non-polymer
59.044
ACETATE ION
1
syn
non-polymer
194.226
TETRAETHYLENE GLYCOL
1
syn
non-polymer
18.015
water
99
nat
water
ubiquitin
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Cattle
sample
1
76
9913
Bos taurus
1.66
25.79
VAPOR DIFFUSION, SITTING DROP
4.5
100mM sodium acetate, 200mM lithium sulphate, 50% PEG400
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2015-03-18
1
1
2015-04-15
1
2
2024-01-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United Kingdom
N
RCSB
Y
PDBE
2015-02-03
REL
REL
EDO
1,2-ETHANEDIOL
IOD
IODIDE ION
ACT
ACETATE ION
PG4
TETRAETHYLENE GLYCOL
HOH
water
1UBQ
PDB
experimental model
EDO
1
2
EDO
EDO
101
A
IOD
1
3
IOD
IOD
102
A
ACT
1
4
ACT
ACT
103
A
PG4
1
5
PG4
PG4
104
A
HOH
89
6
HOH
HOH
201
A
HOH
83
6
HOH
HOH
202
A
HOH
74
6
HOH
HOH
203
A
HOH
92
6
HOH
HOH
204
A
HOH
21
6
HOH
HOH
205
A
HOH
87
6
HOH
HOH
206
A
HOH
27
6
HOH
HOH
207
A
HOH
1
6
HOH
HOH
208
A
HOH
5
6
HOH
HOH
209
A
HOH
91
6
HOH
HOH
210
A
HOH
2
6
HOH
HOH
211
A
HOH
11
6
HOH
HOH
212
A
HOH
4
6
HOH
HOH
213
A
HOH
3
6
HOH
HOH
214
A
HOH
62
6
HOH
HOH
215
A
HOH
54
6
HOH
HOH
216
A
HOH
53
6
HOH
HOH
217
A
HOH
64
6
HOH
HOH
218
A
HOH
81
6
HOH
HOH
219
A
HOH
95
6
HOH
HOH
220
A
HOH
57
6
HOH
HOH
221
A
HOH
34
6
HOH
HOH
222
A
HOH
30
6
HOH
HOH
223
A
HOH
63
6
HOH
HOH
224
A
HOH
61
6
HOH
HOH
225
A
HOH
43
6
HOH
HOH
226
A
HOH
24
6
HOH
HOH
227
A
HOH
59
6
HOH
HOH
228
A
HOH
47
6
HOH
HOH
229
A
HOH
15
6
HOH
HOH
230
A
HOH
88
6
HOH
HOH
231
A
HOH
19
6
HOH
HOH
232
A
HOH
49
6
HOH
HOH
233
A
HOH
68
6
HOH
HOH
234
A
HOH
32
6
HOH
HOH
235
A
HOH
71
6
HOH
HOH
236
A
HOH
78
6
HOH
HOH
237
A
HOH
46
6
HOH
HOH
238
A
HOH
76
6
HOH
HOH
239
A
HOH
67
6
HOH
HOH
240
A
HOH
98
6
HOH
HOH
241
A
HOH
20
6
HOH
HOH
242
A
HOH
79
6
HOH
HOH
243
A
HOH
7
6
HOH
HOH
244
A
HOH
14
6
HOH
HOH
245
A
HOH
16
6
HOH
HOH
246
A
HOH
33
6
HOH
HOH
247
A
HOH
39
6
HOH
HOH
248
A
HOH
44
6
HOH
HOH
249
A
HOH
48
6
HOH
HOH
250
A
HOH
55
6
HOH
HOH
251
A
HOH
56
6
HOH
HOH
252
A
HOH
97
6
HOH
HOH
253
A
HOH
28
6
HOH
HOH
101
B
HOH
85
6
HOH
HOH
102
B
HOH
96
6
HOH
HOH
103
B
HOH
42
6
HOH
HOH
104
B
HOH
40
6
HOH
HOH
105
B
HOH
51
6
HOH
HOH
106
B
HOH
50
6
HOH
HOH
107
B
HOH
23
6
HOH
HOH
108
B
HOH
31
6
HOH
HOH
109
B
HOH
77
6
HOH
HOH
110
B
HOH
84
6
HOH
HOH
111
B
HOH
72
6
HOH
HOH
112
B
HOH
45
6
HOH
HOH
113
B
HOH
66
6
HOH
HOH
114
B
HOH
35
6
HOH
HOH
115
B
HOH
52
6
HOH
HOH
116
B
HOH
73
6
HOH
HOH
117
B
HOH
10
6
HOH
HOH
118
B
HOH
38
6
HOH
HOH
119
B
HOH
8
6
HOH
HOH
120
B
HOH
37
6
HOH
HOH
121
B
HOH
26
6
HOH
HOH
122
B
HOH
75
6
HOH
HOH
123
B
HOH
70
6
HOH
HOH
124
B
HOH
65
6
HOH
HOH
125
B
HOH
36
6
HOH
HOH
126
B
HOH
9
6
HOH
HOH
127
B
HOH
60
6
HOH
HOH
128
B
HOH
41
6
HOH
HOH
129
B
HOH
90
6
HOH
HOH
130
B
HOH
58
6
HOH
HOH
131
B
HOH
82
6
HOH
HOH
132
B
HOH
80
6
HOH
HOH
133
B
HOH
93
6
HOH
HOH
134
B
HOH
94
6
HOH
HOH
135
B
HOH
99
6
HOH
HOH
136
B
HOH
6
6
HOH
HOH
137
B
HOH
12
6
HOH
HOH
138
B
HOH
13
6
HOH
HOH
139
B
HOH
17
6
HOH
HOH
140
B
HOH
18
6
HOH
HOH
141
B
HOH
22
6
HOH
HOH
142
B
HOH
25
6
HOH
HOH
143
B
HOH
29
6
HOH
HOH
144
B
HOH
69
6
HOH
HOH
145
B
HOH
86
6
HOH
HOH
146
B
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
GLU
16
n
16
GLU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
SER
20
n
20
SER
20
A
ASP
21
n
21
ASP
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
GLU
24
n
24
GLU
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
ILE
30
n
30
ILE
30
A
GLN
31
n
31
GLN
31
A
ASP
32
n
32
ASP
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
PRO
38
n
38
PRO
38
A
ASP
39
n
39
ASP
39
A
GLN
40
n
40
GLN
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ILE
44
n
44
ILE
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
GLU
51
n
51
GLU
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
ASP
58
n
58
ASP
58
A
TYR
59
n
59
TYR
59
A
ASN
60
n
60
ASN
60
A
ILE
61
n
61
ILE
61
A
GLN
62
n
62
GLN
62
A
LYS
63
n
63
LYS
63
A
GLU
64
n
64
GLU
64
A
SER
65
n
65
SER
65
A
THR
66
n
66
THR
66
A
LEU
67
n
67
LEU
67
A
HIS
68
n
68
HIS
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
ARG
72
n
72
ARG
72
A
LEU
73
n
73
LEU
73
A
ARG
74
n
74
ARG
74
A
n
75
75
A
n
76
76
A
MET
1
n
1
MET
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
PHE
4
n
4
PHE
4
B
VAL
5
n
5
VAL
5
B
LYS
6
n
6
LYS
6
B
THR
7
n
7
THR
7
B
LEU
8
n
8
LEU
8
B
THR
9
n
9
THR
9
B
GLY
10
n
10
GLY
10
B
LYS
11
n
11
LYS
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
THR
14
n
14
THR
14
B
LEU
15
n
15
LEU
15
B
GLU
16
n
16
GLU
16
B
VAL
17
n
17
VAL
17
B
GLU
18
n
18
GLU
18
B
PRO
19
n
19
PRO
19
B
SER
20
n
20
SER
20
B
ASP
21
n
21
ASP
21
B
THR
22
n
22
THR
22
B
ILE
23
n
23
ILE
23
B
GLU
24
n
24
GLU
24
B
ASN
25
n
25
ASN
25
B
VAL
26
n
26
VAL
26
B
LYS
27
n
27
LYS
27
B
ALA
28
n
28
ALA
28
B
LYS
29
n
29
LYS
29
B
ILE
30
n
30
ILE
30
B
GLN
31
n
31
GLN
31
B
ASP
32
n
32
ASP
32
B
LYS
33
n
33
LYS
33
B
GLU
34
n
34
GLU
34
B
GLY
35
n
35
GLY
35
B
ILE
36
n
36
ILE
36
B
PRO
37
n
37
PRO
37
B
PRO
38
n
38
PRO
38
B
ASP
39
n
39
ASP
39
B
GLN
40
n
40
GLN
40
B
GLN
41
n
41
GLN
41
B
ARG
42
n
42
ARG
42
B
LEU
43
n
43
LEU
43
B
ILE
44
n
44
ILE
44
B
PHE
45
n
45
PHE
45
B
ALA
46
n
46
ALA
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
GLN
49
n
49
GLN
49
B
LEU
50
n
50
LEU
50
B
GLU
51
n
51
GLU
51
B
ASP
52
n
52
ASP
52
B
GLY
53
n
53
GLY
53
B
ARG
54
n
54
ARG
54
B
THR
55
n
55
THR
55
B
LEU
56
n
56
LEU
56
B
SER
57
n
57
SER
57
B
ASP
58
n
58
ASP
58
B
TYR
59
n
59
TYR
59
B
ASN
60
n
60
ASN
60
B
ILE
61
n
61
ILE
61
B
GLN
62
n
62
GLN
62
B
LYS
63
n
63
LYS
63
B
GLU
64
n
64
GLU
64
B
SER
65
n
65
SER
65
B
THR
66
n
66
THR
66
B
LEU
67
n
67
LEU
67
B
HIS
68
n
68
HIS
68
B
LEU
69
n
69
LEU
69
B
VAL
70
n
70
VAL
70
B
LEU
71
n
71
LEU
71
B
ARG
72
n
72
ARG
72
B
LEU
73
n
73
LEU
73
B
ARG
74
n
74
ARG
74
B
GLY
75
n
75
GLY
75
B
n
76
76
B
author_and_software_defined_assembly
PISA
2
dimeric
2340
-9
7770
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
13
A
O
ILE
13
A
N
VAL
5
A
N
VAL
5
A
N
LYS
6
A
N
LYS
6
A
O
LEU
67
A
O
LEU
67
A
O
HIS
68
A
O
HIS
68
A
N
ILE
44
A
N
ILE
44
A
N
PHE
45
A
N
PHE
45
A
O
LYS
48
A
O
LYS
48
B
O
ILE
13
B
O
ILE
13
B
N
VAL
5
B
N
VAL
5
B
N
PHE
4
B
N
PHE
4
B
O
LEU
67
B
O
LEU
67
B
O
HIS
68
B
O
HIS
68
B
N
ILE
44
B
N
ILE
44
B
N
PHE
45
B
N
PHE
45
B
O
LYS
48
B
O
LYS
48
1
A
CG
GLU
24
A
CG
GLU
24
1
Y
1
A
CD
GLU
24
A
CD
GLU
24
1
Y
1
A
OE1
GLU
24
A
OE1
GLU
24
1
Y
1
A
OE2
GLU
24
A
OE2
GLU
24
1
Y
1
B
CG
GLN
2
B
CG
GLN
2
1
Y
1
B
CD
GLN
2
B
CD
GLN
2
1
Y
1
B
OE1
GLN
2
B
OE1
GLN
2
1
Y
1
B
NE2
GLN
2
B
NE2
GLN
2
1
Y
1
A
GLY
75
A
GLY
75
1
Y
1
A
GLY
76
A
GLY
76
1
Y
1
B
GLY
76
B
GLY
76
1
Y
1
5.60
0.90
118.30
123.90
A
A
A
CB
CG
OD1
ASP
ASP
ASP
21
21
21
N
1
5.39
0.50
120.30
125.69
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
42
42
42
N
1
-6.18
0.50
120.30
114.12
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
42
42
42
N
1
12.68
1.70
111.00
123.68
B
B
B
CB
CG
CD1
LEU
LEU
LEU
8
8
8
N
1
B
B
CD
OE1
GLU
GLU
24
24
0.079
0.011
1.252
1.331
N
1
B
B
CD
OE2
GLU
GLU
24
24
0.136
0.011
1.252
1.388
N
12.587
0.24
0.00
-0.69
0.11
0.00
-0.22
0.962
0.933
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.21353
0.16235
0.16493
1.65
33.83
693
12779
5.1
99.38
2.194
0.075
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.113
0.115
0.80
0.80
1.20
1UBQ
MAXIMUM LIKELIHOOD
MASK
1.65
33.83
99
1303
22
0
1182
0.019
0.019
1212
0.001
0.020
1246
1.986
2.007
1623
0.913
3.000
2876
7.242
5.000
147
37.581
25.385
52
13.142
15.000
244
20.334
15.000
8
0.114
0.200
194
0.009
0.021
1309
0.001
0.020
239
1.026
1.029
595
1.012
1.022
593
1.471
1.532
739
1.472
1.536
740
2.172
1.354
617
2.165
1.354
617
3.278
1.905
885
4.402
8.713
1296
4.403
8.730
1297
0.293
0.201
1.693
62
928
20
98.80
1.65
33.83
4XYZ
13474
12779
0.1033
1
10.55
4.3
99.4
1.65
1.71
1
4.4
99.04
data reduction
XDS
data scaling
SCALA
refinement
REFMAC
5.8.0073
phasing
PHASER
Crystal structure of K33 linked di-Ubiquitin
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
A
THR
22
A
THR
22
HELX_P
A
GLY
35
A
GLY
35
1
AA1
14
A
PRO
37
A
PRO
37
HELX_P
A
ASP
39
A
ASP
39
5
AA2
3
A
LEU
56
A
LEU
56
HELX_P
A
ASN
60
A
ASN
60
5
AA3
5
B
THR
22
B
THR
22
HELX_P
B
GLY
35
B
GLY
35
1
AA4
14
B
PRO
37
B
PRO
37
HELX_P
B
ASP
39
B
ASP
39
5
AA5
3
B
THR
55
B
THR
55
HELX_P
B
ASN
60
B
ASN
60
5
AA6
6
SIGNALING PROTEIN
K33, Lys33 linked di-ubiquitin, SIGNALING PROTEIN
UBC_BOVIN
UNP
1
77
P0CH28
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
77
152
4XYZ
1
76
P0CH28
A
1
1
76
77
152
4XYZ
1
76
P0CH28
B
1
1
76
5
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
12
A
THR
12
A
GLU
16
A
GLU
16
A
GLN
2
A
GLN
2
A
LYS
6
A
LYS
6
A
THR
66
A
THR
66
A
LEU
71
A
LEU
71
A
GLN
41
A
GLN
41
A
PHE
45
A
PHE
45
A
LYS
48
A
LYS
48
A
GLN
49
A
GLN
49
B
THR
12
B
THR
12
B
GLU
16
B
GLU
16
B
GLN
2
B
GLN
2
B
THR
7
B
THR
7
B
THR
66
B
THR
66
B
LEU
71
B
LEU
71
B
GLN
41
B
GLN
41
B
PHE
45
B
PHE
45
B
LYS
48
B
LYS
48
B
GLN
49
B
GLN
49
binding site for residue EDO A 101
A
EDO
101
Software
3
binding site for residue IOD A 102
A
IOD
102
Software
1
binding site for residue ACT A 103
A
ACT
103
Software
3
binding site for residue PG4 A 104
A
PG4
104
Software
5
A
ARG
42
A
ARG
42
3
1_554
A
LYS
63
A
LYS
63
3
1_555
B
LYS
11
B
LYS
11
3
1_554
A
LEU
71
A
LEU
71
1
1_555
A
LEU
8
A
LEU
8
3
1_555
A
HIS
68
A
HIS
68
3
1_555
A
VAL
70
A
VAL
70
3
1_555
A
PHE
4
A
PHE
4
5
1_555
A
LYS
6
A
LYS
6
5
1_555
A
SER
20
A
SER
20
5
1_655
A
HOH
206
G
HOH
5
1_555
A
HOH
236
G
HOH
5
1_555
4
P 1 21 1