0.013401
0.000000
0.000000
0.000000
0.013401
0.000000
0.000000
0.000000
0.003467
0.00000
0.00000
0.00000
Vives-Adrian, L.
Ferrer-Orta, C.
Cerdaguer, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
74.620
74.620
288.430
C20 H9 F N4 O6
420.307
2,2'-[(4-fluorobenzene-1,2-diyl)bis(oxy)]bis(5-nitrobenzonitrile)
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
N
6
N
N
N
7
N
O
N
8
N
O
Y
9
N
C
Y
10
N
C
Y
11
N
C
N
12
N
O
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
N
17
N
F
Y
18
N
C
Y
19
N
C
N
20
N
O
Y
21
N
C
Y
22
N
C
N
23
N
C
N
24
N
N
Y
25
N
C
Y
26
N
C
Y
27
N
C
Y
28
N
C
N
29
N
N
N
30
N
O
N
31
N
O
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
O
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
N
N
55
S
C
N
56
N
C
N
57
N
O
N
58
N
C
N
59
N
C
N
60
N
C
N
61
N
N
N
62
N
C
N
63
N
N
N
64
N
N
N
65
N
O
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
O
N
88
N
N
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
O
N
105
N
O
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
R
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
S
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
N
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
O
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
Y
196
N
C
Y
197
N
N
Y
198
N
C
Y
199
N
C
Y
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
S
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
N
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
S
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
S
N
359
N
O
N
360
N
O
N
361
N
O
N
362
N
O
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
R
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
N
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
O
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
1
N
sing
N
2
N
doub
N
3
N
sing
Y
4
N
doub
Y
5
N
sing
N
6
N
sing
Y
7
N
sing
Y
8
N
doub
Y
9
N
doub
Y
10
N
sing
Y
11
N
sing
N
12
N
sing
Y
13
N
doub
Y
14
N
doub
N
15
N
doub
N
16
N
sing
Y
17
N
sing
N
18
N
sing
Y
19
N
doub
Y
20
N
doub
Y
21
N
sing
Y
22
N
sing
Y
23
N
sing
N
24
N
sing
N
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
doub
Y
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
trip
N
33
N
trip
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
Y
195
N
sing
Y
196
N
doub
Y
197
N
doub
N
198
N
sing
Y
199
N
sing
N
200
N
sing
Y
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
Y
303
N
doub
Y
304
N
sing
Y
305
N
sing
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Y
376
N
doub
Y
377
N
sing
Y
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
US
Plos Pathog.
1553-7374
11
e1004733
e1004733
10.1371/journal.ppat.1004733
25799064
The RNA Template Channel of the RNA-Dependent RNA Polymerase as a Target for Development of Antiviral Therapy of Multiple Genera within a Virus Family.
2015
10.2210/pdb4y34/pdb
pdb_00004y34
100
1
PIXEL
2011-07-08
PSI PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.977
1.0
ID29
ESRF
0.977
SYNCHROTRON
ESRF BEAMLINE ID29
53167.773
3D polymerase
1
man
polymer
420.307
2,2'-[(4-fluorobenzene-1,2-diyl)bis(oxy)]bis(5-nitrobenzonitrile)
1
syn
non-polymer
96.063
SULFATE ION
5
syn
non-polymer
92.094
GLYCEROL
4
syn
non-polymer
18.015
water
56
nat
water
no
no
GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRSGDPRLKANFEEAIFSKYIGNVNTHVDEYMLEAVDH
YAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKD
ELRSIEKVAKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS
LSPVWFACLKMILEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLD
QFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADKGECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHE
SIRWTKDPKNTQDHVRSLCLLAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSFHHHHH
GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRSGDPRLKANFEEAIFSKYIGNVNTHVDEYMLEAVDH
YAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKD
ELRSIEKVAKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS
LSPVWFACLKMILEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLD
QFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADKGECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHE
SIRWTKDPKNTQDHVRSLCLLAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSFHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
467
12072
Coxsackievirus B3
562
Escherichia coli
Biological sequence
3.75
67.17
VAPOR DIFFUSION, SITTING DROP
50mM Tris pH 7.5, 24.5% (w/v) Glycerol, 1,29M Ammonium Sulfate
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2015-04-01
1
1
2015-04-08
1
2
2024-01-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
RCSB
Y
PDBE
2015-02-10
REL
REL
45Z
2,2'-[(4-fluorobenzene-1,2-diyl)bis(oxy)]bis(5-nitrobenzonitrile)
SO4
SULFATE ION
GOL
GLYCEROL
HOH
water
32630
synthetic construct
sample
3DDK
PDB
experimental model
143
1
2
45Z
45Z
501
A
SO4
1
3
SO4
SO4
502
A
SO4
1
3
SO4
SO4
503
A
SO4
2
3
SO4
SO4
504
A
GOL
1
4
GOL
GOL
505
A
SO4
1
3
SO4
SO4
506
A
GOL
1
4
GOL
GOL
507
A
GOL
1
4
GOL
GOL
508
A
GOL
1
4
GOL
GOL
509
A
SO4
1
3
SO4
SO4
510
A
HOH
59
5
HOH
HOH
601
A
HOH
9
5
HOH
HOH
602
A
HOH
1
5
HOH
HOH
603
A
HOH
19
5
HOH
HOH
604
A
HOH
2
5
HOH
HOH
605
A
HOH
6
5
HOH
HOH
606
A
HOH
8
5
HOH
HOH
607
A
HOH
9
5
HOH
HOH
608
A
HOH
4
5
HOH
HOH
609
A
HOH
5
5
HOH
HOH
610
A
HOH
7
5
HOH
HOH
611
A
HOH
8
5
HOH
HOH
612
A
HOH
10
5
HOH
HOH
613
A
HOH
11
5
HOH
HOH
614
A
HOH
12
5
HOH
HOH
615
A
HOH
13
5
HOH
HOH
616
A
HOH
14
5
HOH
HOH
617
A
HOH
15
5
HOH
HOH
618
A
HOH
20
5
HOH
HOH
619
A
HOH
21
5
HOH
HOH
620
A
HOH
24
5
HOH
HOH
621
A
HOH
26
5
HOH
HOH
622
A
HOH
27
5
HOH
HOH
623
A
HOH
29
5
HOH
HOH
624
A
HOH
32
5
HOH
HOH
625
A
HOH
34
5
HOH
HOH
626
A
HOH
35
5
HOH
HOH
627
A
HOH
36
5
HOH
HOH
628
A
HOH
38
5
HOH
HOH
629
A
HOH
41
5
HOH
HOH
630
A
HOH
45
5
HOH
HOH
631
A
HOH
48
5
HOH
HOH
632
A
HOH
53
5
HOH
HOH
633
A
HOH
56
5
HOH
HOH
634
A
HOH
60
5
HOH
HOH
635
A
HOH
65
5
HOH
HOH
636
A
HOH
67
5
HOH
HOH
637
A
HOH
69
5
HOH
HOH
638
A
HOH
70
5
HOH
HOH
639
A
HOH
74
5
HOH
HOH
640
A
HOH
75
5
HOH
HOH
641
A
HOH
76
5
HOH
HOH
642
A
HOH
91
5
HOH
HOH
643
A
HOH
102
5
HOH
HOH
644
A
HOH
106
5
HOH
HOH
645
A
HOH
126
5
HOH
HOH
646
A
HOH
149
5
HOH
HOH
647
A
HOH
152
5
HOH
HOH
648
A
HOH
157
5
HOH
HOH
649
A
HOH
1
5
HOH
HOH
650
A
HOH
2
5
HOH
HOH
651
A
HOH
3
5
HOH
HOH
652
A
HOH
1
5
HOH
HOH
653
A
HOH
2
5
HOH
HOH
654
A
HOH
3
5
HOH
HOH
655
A
HOH
4
5
HOH
HOH
656
A
GLY
1
n
1
GLY
1
A
GLU
2
n
2
GLU
2
A
ILE
3
n
3
ILE
3
A
GLU
4
n
4
GLU
4
A
PHE
5
n
5
PHE
5
A
ILE
6
n
6
ILE
6
A
GLU
7
n
7
GLU
7
A
SER
8
n
8
SER
8
A
SER
9
n
9
SER
9
A
LYS
10
n
10
LYS
10
A
ASP
11
n
11
ASP
11
A
ALA
12
n
12
ALA
12
A
GLY
13
n
13
GLY
13
A
PHE
14
n
14
PHE
14
A
PRO
15
n
15
PRO
15
A
VAL
16
n
16
VAL
16
A
ILE
17
n
17
ILE
17
A
ASN
18
n
18
ASN
18
A
THR
19
n
19
THR
19
A
PRO
20
n
20
PRO
20
A
SER
21
n
21
SER
21
A
LYS
22
n
22
LYS
22
A
THR
23
n
23
THR
23
A
LYS
24
n
24
LYS
24
A
LEU
25
n
25
LEU
25
A
GLU
26
n
26
GLU
26
A
PRO
27
n
27
PRO
27
A
SER
28
n
28
SER
28
A
VAL
29
n
29
VAL
29
A
PHE
30
n
30
PHE
30
A
HIS
31
n
31
HIS
31
A
GLN
32
n
32
GLN
32
A
VAL
33
n
33
VAL
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
GLY
36
n
36
GLY
36
A
ASN
37
n
37
ASN
37
A
LYS
38
n
38
LYS
38
A
GLU
39
n
39
GLU
39
A
PRO
40
n
40
PRO
40
A
ALA
41
n
41
ALA
41
A
VAL
42
n
42
VAL
42
A
LEU
43
n
43
LEU
43
A
ARG
44
n
44
ARG
44
A
SER
45
n
45
SER
45
A
GLY
46
n
46
GLY
46
A
ASP
47
n
47
ASP
47
A
PRO
48
n
48
PRO
48
A
ARG
49
n
49
ARG
49
A
LEU
50
n
50
LEU
50
A
LYS
51
n
51
LYS
51
A
ALA
52
n
52
ALA
52
A
ASN
53
n
53
ASN
53
A
PHE
54
n
54
PHE
54
A
GLU
55
n
55
GLU
55
A
GLU
56
n
56
GLU
56
A
ALA
57
n
57
ALA
57
A
ILE
58
n
58
ILE
58
A
PHE
59
n
59
PHE
59
A
SER
60
n
60
SER
60
A
LYS
61
n
61
LYS
61
A
TYR
62
n
62
TYR
62
A
ILE
63
n
63
ILE
63
A
GLY
64
n
64
GLY
64
A
ASN
65
n
65
ASN
65
A
VAL
66
n
66
VAL
66
A
ASN
67
n
67
ASN
67
A
THR
68
n
68
THR
68
A
HIS
69
n
69
HIS
69
A
VAL
70
n
70
VAL
70
A
ASP
71
n
71
ASP
71
A
GLU
72
n
72
GLU
72
A
TYR
73
n
73
TYR
73
A
MET
74
n
74
MET
74
A
LEU
75
n
75
LEU
75
A
GLU
76
n
76
GLU
76
A
ALA
77
n
77
ALA
77
A
VAL
78
n
78
VAL
78
A
ASP
79
n
79
ASP
79
A
HIS
80
n
80
HIS
80
A
TYR
81
n
81
TYR
81
A
ALA
82
n
82
ALA
82
A
GLY
83
n
83
GLY
83
A
GLN
84
n
84
GLN
84
A
LEU
85
n
85
LEU
85
A
ALA
86
n
86
ALA
86
A
THR
87
n
87
THR
87
A
LEU
88
n
88
LEU
88
A
ASP
89
n
89
ASP
89
A
ILE
90
n
90
ILE
90
A
SER
91
n
91
SER
91
A
THR
92
n
92
THR
92
A
GLU
93
n
93
GLU
93
A
PRO
94
n
94
PRO
94
A
MET
95
n
95
MET
95
A
LYS
96
n
96
LYS
96
A
LEU
97
n
97
LEU
97
A
GLU
98
n
98
GLU
98
A
ASP
99
n
99
ASP
99
A
ALA
100
n
100
ALA
100
A
VAL
101
n
101
VAL
101
A
TYR
102
n
102
TYR
102
A
GLY
103
n
103
GLY
103
A
THR
104
n
104
THR
104
A
GLU
105
n
105
GLU
105
A
GLY
106
n
106
GLY
106
A
LEU
107
n
107
LEU
107
A
GLU
108
n
108
GLU
108
A
ALA
109
n
109
ALA
109
A
LEU
110
n
110
LEU
110
A
ASP
111
n
111
ASP
111
A
LEU
112
n
112
LEU
112
A
THR
113
n
113
THR
113
A
THR
114
n
114
THR
114
A
SER
115
n
115
SER
115
A
ALA
116
n
116
ALA
116
A
GLY
117
n
117
GLY
117
A
TYR
118
n
118
TYR
118
A
PRO
119
n
119
PRO
119
A
TYR
120
n
120
TYR
120
A
VAL
121
n
121
VAL
121
A
ALA
122
n
122
ALA
122
A
LEU
123
n
123
LEU
123
A
GLY
124
n
124
GLY
124
A
ILE
125
n
125
ILE
125
A
LYS
126
n
126
LYS
126
A
LYS
127
n
127
LYS
127
A
ARG
128
n
128
ARG
128
A
ASP
129
n
129
ASP
129
A
ILE
130
n
130
ILE
130
A
LEU
131
n
131
LEU
131
A
SER
132
n
132
SER
132
A
LYS
133
n
133
LYS
133
A
LYS
134
n
134
LYS
134
A
THR
135
n
135
THR
135
A
LYS
136
n
136
LYS
136
A
ASP
137
n
137
ASP
137
A
LEU
138
n
138
LEU
138
A
THR
139
n
139
THR
139
A
LYS
140
n
140
LYS
140
A
LEU
141
n
141
LEU
141
A
LYS
142
n
142
LYS
142
A
GLU
143
n
143
GLU
143
A
CYS
144
n
144
CYS
144
A
MET
145
n
145
MET
145
A
ASP
146
n
146
ASP
146
A
LYS
147
n
147
LYS
147
A
TYR
148
n
148
TYR
148
A
GLY
149
n
149
GLY
149
A
LEU
150
n
150
LEU
150
A
ASN
151
n
151
ASN
151
A
LEU
152
n
152
LEU
152
A
PRO
153
n
153
PRO
153
A
MET
154
n
154
MET
154
A
VAL
155
n
155
VAL
155
A
THR
156
n
156
THR
156
A
TYR
157
n
157
TYR
157
A
VAL
158
n
158
VAL
158
A
LYS
159
n
159
LYS
159
A
ASP
160
n
160
ASP
160
A
GLU
161
n
161
GLU
161
A
LEU
162
n
162
LEU
162
A
ARG
163
n
163
ARG
163
A
SER
164
n
164
SER
164
A
ILE
165
n
165
ILE
165
A
GLU
166
n
166
GLU
166
A
LYS
167
n
167
LYS
167
A
VAL
168
n
168
VAL
168
A
ALA
169
n
169
ALA
169
A
LYS
170
n
170
LYS
170
A
GLY
171
n
171
GLY
171
A
LYS
172
n
172
LYS
172
A
SER
173
n
173
SER
173
A
ARG
174
n
174
ARG
174
A
LEU
175
n
175
LEU
175
A
ILE
176
n
176
ILE
176
A
GLU
177
n
177
GLU
177
A
ALA
178
n
178
ALA
178
A
SER
179
n
179
SER
179
A
SER
180
n
180
SER
180
A
LEU
181
n
181
LEU
181
A
ASN
182
n
182
ASN
182
A
ASP
183
n
183
ASP
183
A
SER
184
n
184
SER
184
A
VAL
185
n
185
VAL
185
A
ALA
186
n
186
ALA
186
A
MET
187
n
187
MET
187
A
ARG
188
n
188
ARG
188
A
GLN
189
n
189
GLN
189
A
THR
190
n
190
THR
190
A
PHE
191
n
191
PHE
191
A
GLY
192
n
192
GLY
192
A
ASN
193
n
193
ASN
193
A
LEU
194
n
194
LEU
194
A
TYR
195
n
195
TYR
195
A
LYS
196
n
196
LYS
196
A
THR
197
n
197
THR
197
A
PHE
198
n
198
PHE
198
A
HIS
199
n
199
HIS
199
A
LEU
200
n
200
LEU
200
A
ASN
201
n
201
ASN
201
A
PRO
202
n
202
PRO
202
A
GLY
203
n
203
GLY
203
A
VAL
204
n
204
VAL
204
A
VAL
205
n
205
VAL
205
A
THR
206
n
206
THR
206
A
GLY
207
n
207
GLY
207
A
SER
208
n
208
SER
208
A
ALA
209
n
209
ALA
209
A
VAL
210
n
210
VAL
210
A
GLY
211
n
211
GLY
211
A
CYS
212
n
212
CYS
212
A
ASP
213
n
213
ASP
213
A
PRO
214
n
214
PRO
214
A
ASP
215
n
215
ASP
215
A
LEU
216
n
216
LEU
216
A
PHE
217
n
217
PHE
217
A
TRP
218
n
218
TRP
218
A
SER
219
n
219
SER
219
A
LYS
220
n
220
LYS
220
A
ILE
221
n
221
ILE
221
A
PRO
222
n
222
PRO
222
A
VAL
223
n
223
VAL
223
A
MET
224
n
224
MET
224
A
LEU
225
n
225
LEU
225
A
ASP
226
n
226
ASP
226
A
GLY
227
n
227
GLY
227
A
HIS
228
n
228
HIS
228
A
LEU
229
n
229
LEU
229
A
ILE
230
n
230
ILE
230
A
ALA
231
n
231
ALA
231
A
PHE
232
n
232
PHE
232
A
ASP
233
n
233
ASP
233
A
TYR
234
n
234
TYR
234
A
SER
235
n
235
SER
235
A
GLY
236
n
236
GLY
236
A
TYR
237
n
237
TYR
237
A
ASP
238
n
238
ASP
238
A
ALA
239
n
239
ALA
239
A
SER
240
n
240
SER
240
A
LEU
241
n
241
LEU
241
A
SER
242
n
242
SER
242
A
PRO
243
n
243
PRO
243
A
VAL
244
n
244
VAL
244
A
TRP
245
n
245
TRP
245
A
PHE
246
n
246
PHE
246
A
ALA
247
n
247
ALA
247
A
CYS
248
n
248
CYS
248
A
LEU
249
n
249
LEU
249
A
LYS
250
n
250
LYS
250
A
MET
251
n
251
MET
251
A
ILE
252
n
252
ILE
252
A
LEU
253
n
253
LEU
253
A
GLU
254
n
254
GLU
254
A
LYS
255
n
255
LYS
255
A
LEU
256
n
256
LEU
256
A
GLY
257
n
257
GLY
257
A
TYR
258
n
258
TYR
258
A
THR
259
n
259
THR
259
A
HIS
260
n
260
HIS
260
A
LYS
261
n
261
LYS
261
A
GLU
262
n
262
GLU
262
A
THR
263
n
263
THR
263
A
ASN
264
n
264
ASN
264
A
TYR
265
n
265
TYR
265
A
ILE
266
n
266
ILE
266
A
ASP
267
n
267
ASP
267
A
TYR
268
n
268
TYR
268
A
LEU
269
n
269
LEU
269
A
CYS
270
n
270
CYS
270
A
ASN
271
n
271
ASN
271
A
SER
272
n
272
SER
272
A
HIS
273
n
273
HIS
273
A
HIS
274
n
274
HIS
274
A
LEU
275
n
275
LEU
275
A
TYR
276
n
276
TYR
276
A
ARG
277
n
277
ARG
277
A
ASP
278
n
278
ASP
278
A
LYS
279
n
279
LYS
279
A
HIS
280
n
280
HIS
280
A
TYR
281
n
281
TYR
281
A
PHE
282
n
282
PHE
282
A
VAL
283
n
283
VAL
283
A
ARG
284
n
284
ARG
284
A
GLY
285
n
285
GLY
285
A
GLY
286
n
286
GLY
286
A
MET
287
n
287
MET
287
A
PRO
288
n
288
PRO
288
A
SER
289
n
289
SER
289
A
GLY
290
n
290
GLY
290
A
CYS
291
n
291
CYS
291
A
SER
292
n
292
SER
292
A
GLY
293
n
293
GLY
293
A
THR
294
n
294
THR
294
A
SER
295
n
295
SER
295
A
ILE
296
n
296
ILE
296
A
PHE
297
n
297
PHE
297
A
ASN
298
n
298
ASN
298
A
SER
299
n
299
SER
299
A
MET
300
n
300
MET
300
A
ILE
301
n
301
ILE
301
A
ASN
302
n
302
ASN
302
A
ASN
303
n
303
ASN
303
A
ILE
304
n
304
ILE
304
A
ILE
305
n
305
ILE
305
A
ILE
306
n
306
ILE
306
A
ARG
307
n
307
ARG
307
A
THR
308
n
308
THR
308
A
LEU
309
n
309
LEU
309
A
MET
310
n
310
MET
310
A
LEU
311
n
311
LEU
311
A
LYS
312
n
312
LYS
312
A
VAL
313
n
313
VAL
313
A
TYR
314
n
314
TYR
314
A
LYS
315
n
315
LYS
315
A
GLY
316
n
316
GLY
316
A
ILE
317
n
317
ILE
317
A
ASP
318
n
318
ASP
318
A
LEU
319
n
319
LEU
319
A
ASP
320
n
320
ASP
320
A
GLN
321
n
321
GLN
321
A
PHE
322
n
322
PHE
322
A
ARG
323
n
323
ARG
323
A
MET
324
n
324
MET
324
A
ILE
325
n
325
ILE
325
A
ALA
326
n
326
ALA
326
A
TYR
327
n
327
TYR
327
A
GLY
328
n
328
GLY
328
A
ASP
329
n
329
ASP
329
A
ASP
330
n
330
ASP
330
A
VAL
331
n
331
VAL
331
A
ILE
332
n
332
ILE
332
A
ALA
333
n
333
ALA
333
A
SER
334
n
334
SER
334
A
TYR
335
n
335
TYR
335
A
PRO
336
n
336
PRO
336
A
TRP
337
n
337
TRP
337
A
PRO
338
n
338
PRO
338
A
ILE
339
n
339
ILE
339
A
ASP
340
n
340
ASP
340
A
ALA
341
n
341
ALA
341
A
SER
342
n
342
SER
342
A
LEU
343
n
343
LEU
343
A
LEU
344
n
344
LEU
344
A
ALA
345
n
345
ALA
345
A
GLU
346
n
346
GLU
346
A
ALA
347
n
347
ALA
347
A
GLY
348
n
348
GLY
348
A
LYS
349
n
349
LYS
349
A
GLY
350
n
350
GLY
350
A
TYR
351
n
351
TYR
351
A
GLY
352
n
352
GLY
352
A
LEU
353
n
353
LEU
353
A
ILE
354
n
354
ILE
354
A
MET
355
n
355
MET
355
A
THR
356
n
356
THR
356
A
PRO
357
n
357
PRO
357
A
ALA
358
n
358
ALA
358
A
ASP
359
n
359
ASP
359
A
LYS
360
n
360
LYS
360
A
GLY
361
n
361
GLY
361
A
GLU
362
n
362
GLU
362
A
CYS
363
n
363
CYS
363
A
PHE
364
n
364
PHE
364
A
ASN
365
n
365
ASN
365
A
GLU
366
n
366
GLU
366
A
VAL
367
n
367
VAL
367
A
THR
368
n
368
THR
368
A
TRP
369
n
369
TRP
369
A
THR
370
n
370
THR
370
A
ASN
371
n
371
ASN
371
A
VAL
372
n
372
VAL
372
A
THR
373
n
373
THR
373
A
PHE
374
n
374
PHE
374
A
LEU
375
n
375
LEU
375
A
LYS
376
n
376
LYS
376
A
ARG
377
n
377
ARG
377
A
TYR
378
n
378
TYR
378
A
PHE
379
n
379
PHE
379
A
ARG
380
n
380
ARG
380
A
ALA
381
n
381
ALA
381
A
ASP
382
n
382
ASP
382
A
GLU
383
n
383
GLU
383
A
GLN
384
n
384
GLN
384
A
TYR
385
n
385
TYR
385
A
PRO
386
n
386
PRO
386
A
PHE
387
n
387
PHE
387
A
LEU
388
n
388
LEU
388
A
VAL
389
n
389
VAL
389
A
HIS
390
n
390
HIS
390
A
PRO
391
n
391
PRO
391
A
VAL
392
n
392
VAL
392
A
MET
393
n
393
MET
393
A
PRO
394
n
394
PRO
394
A
MET
395
n
395
MET
395
A
LYS
396
n
396
LYS
396
A
ASP
397
n
397
ASP
397
A
ILE
398
n
398
ILE
398
A
HIS
399
n
399
HIS
399
A
GLU
400
n
400
GLU
400
A
SER
401
n
401
SER
401
A
ILE
402
n
402
ILE
402
A
ARG
403
n
403
ARG
403
A
TRP
404
n
404
TRP
404
A
THR
405
n
405
THR
405
A
LYS
406
n
406
LYS
406
A
ASP
407
n
407
ASP
407
A
PRO
408
n
408
PRO
408
A
LYS
409
n
409
LYS
409
A
ASN
410
n
410
ASN
410
A
THR
411
n
411
THR
411
A
GLN
412
n
412
GLN
412
A
ASP
413
n
413
ASP
413
A
HIS
414
n
414
HIS
414
A
VAL
415
n
415
VAL
415
A
ARG
416
n
416
ARG
416
A
SER
417
n
417
SER
417
A
LEU
418
n
418
LEU
418
A
CYS
419
n
419
CYS
419
A
LEU
420
n
420
LEU
420
A
LEU
421
n
421
LEU
421
A
ALA
422
n
422
ALA
422
A
TRP
423
n
423
TRP
423
A
HIS
424
n
424
HIS
424
A
ASN
425
n
425
ASN
425
A
GLY
426
n
426
GLY
426
A
GLU
427
n
427
GLU
427
A
HIS
428
n
428
HIS
428
A
GLU
429
n
429
GLU
429
A
TYR
430
n
430
TYR
430
A
GLU
431
n
431
GLU
431
A
GLU
432
n
432
GLU
432
A
PHE
433
n
433
PHE
433
A
ILE
434
n
434
ILE
434
A
ARG
435
n
435
ARG
435
A
LYS
436
n
436
LYS
436
A
ILE
437
n
437
ILE
437
A
ARG
438
n
438
ARG
438
A
SER
439
n
439
SER
439
A
VAL
440
n
440
VAL
440
A
PRO
441
n
441
PRO
441
A
VAL
442
n
442
VAL
442
A
GLY
443
n
443
GLY
443
A
ARG
444
n
444
ARG
444
A
CYS
445
n
445
CYS
445
A
LEU
446
n
446
LEU
446
A
THR
447
n
447
THR
447
A
LEU
448
n
448
LEU
448
A
PRO
449
n
449
PRO
449
A
ALA
450
n
450
ALA
450
A
PHE
451
n
451
PHE
451
A
SER
452
n
452
SER
452
A
THR
453
n
453
THR
453
A
LEU
454
n
454
LEU
454
A
ARG
455
n
455
ARG
455
A
ARG
456
n
456
ARG
456
A
LYS
457
n
457
LYS
457
A
TRP
458
n
458
TRP
458
A
LEU
459
n
459
LEU
459
A
ASP
460
n
460
ASP
460
A
SER
461
n
461
SER
461
A
PHE
462
n
462
PHE
462
A
HIS
463
n
463
HIS
463
A
HIS
464
n
464
HIS
464
A
HIS
465
n
465
HIS
465
A
HIS
466
n
466
HIS
466
A
HIS
467
n
467
HIS
467
A
author_and_software_defined_assembly
PISA
1
monomeric
1910
-69
22030
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
2
A
N
GLU
2
A
O
ARG
284
A
O
ARG
284
A
O
TYR
281
A
O
TYR
281
A
N
HIS
274
A
N
HIS
274
A
O
LEU
275
A
O
LEU
275
A
N
MET
154
A
N
MET
154
A
N
VAL
155
A
N
VAL
155
A
O
ALA
178
A
O
ALA
178
A
N
GLU
26
A
N
GLU
26
A
O
THR
405
A
O
THR
405
A
N
GLU
39
A
N
GLU
39
A
O
ARG
163
A
O
ARG
163
A
N
ARG
323
A
N
ARG
323
A
O
SER
334
A
O
SER
334
A
O
TYR
335
A
O
TYR
335
A
N
HIS
228
A
N
HIS
228
A
N
ASP
233
A
N
ASP
233
A
O
THR
356
A
O
THR
356
A
N
ARG
380
A
N
ARG
380
A
O
HIS
390
A
O
HIS
390
1
A
A
NZ
O
LYS
HIS
220
467
0.53
1
A
A
CE
O
LYS
HIS
220
467
1.38
1
A
A
NZ
C
LYS
HIS
220
467
1.63
1
A
A
NH2
O4
ARG
SO4
416
503
2.14
1
7.79
0.90
118.30
126.09
A
A
A
CB
CG
OD1
ASP
ASP
ASP
111
111
111
N
1
-6.62
0.90
118.30
111.68
A
A
A
CB
CG
OD2
ASP
ASP
ASP
111
111
111
N
1
-18.04
1.80
110.60
92.56
A
A
A
N
CA
CB
HIS
HIS
HIS
466
466
466
N
1
A
THR
104
179.99
163.78
1
A
ARG
277
51.52
-121.75
1
A
TYR
314
-113.80
76.27
1
A
LYS
360
34.45
40.12
1
A
PHE
364
-69.80
72.56
1
A
LYS
376
59.73
15.75
1
A
ASP
407
-161.31
100.63
1
A
PHE
462
-87.43
35.00
1
A
HIS
465
86.16
-152.69
49.647
0.24
0.00
0.00
0.24
0.00
-0.48
0.933
0.910
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24072
0.20415
0.20607
2.70
72.2
1168
21638
5.1
97.25
9.984
0.205
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.455
0.283
0.80
0.80
1.40
3DDK
MAXIMUM LIKELIHOOD
MASK
2.70
72.2
56
3875
49
0
3770
0.019
0.022
3942
1.793
1.973
5341
6.415
5.000
474
37.833
23.750
176
19.026
15.000
671
18.870
15.000
19
0.120
0.200
567
0.008
0.021
2966
0.900
1.500
2337
1.753
2.000
3785
2.517
3.000
1605
4.204
4.500
1552
0.356
0.296
2.770
80
1539
20
95.35
2.7
72.2
4Y34
21638
0.072
0.070
1
9.2
3.6
96.8
0.471
2.7
2.85
0.400
3.3
95.8
refinement
REFMAC
5.5.0102
data reduction
XDS
data scaling
SCALA
phasing
REFMAC
Crystal Structure of Coxsackievirus B3 3D polymerase in complex with GPC-N143
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
4
N
N
4
N
N
4
N
N
3
N
N
5
N
N
A
LYS
10
A
LYS
10
HELX_P
A
GLY
13
A
GLY
13
5
AA1
4
A
ASN
53
A
ASN
53
HELX_P
A
LYS
61
A
LYS
61
1
AA2
9
A
ASP
71
A
ASP
71
HELX_P
A
THR
87
A
THR
87
1
AA3
17
A
LYS
96
A
LYS
96
HELX_P
A
GLY
103
A
GLY
103
1
AA4
8
A
LYS
126
A
LYS
126
HELX_P
A
ILE
130
A
ILE
130
5
AA5
5
A
LEU
138
A
LEU
138
HELX_P
A
GLY
149
A
GLY
149
1
AA6
12
A
SER
164
A
SER
164
HELX_P
A
LYS
170
A
LYS
170
1
AA7
7
A
SER
180
A
SER
180
HELX_P
A
ASN
201
A
ASN
201
1
AA8
22
A
ASP
213
A
ASP
213
HELX_P
A
TRP
218
A
TRP
218
1
AA9
6
A
LYS
220
A
LYS
220
HELX_P
A
LEU
225
A
LEU
225
1
AB1
6
A
GLY
236
A
GLY
236
HELX_P
A
LEU
241
A
LEU
241
1
AB2
6
A
SER
242
A
SER
242
HELX_P
A
LEU
256
A
LEU
256
1
AB3
15
A
THR
259
A
THR
259
HELX_P
A
CYS
270
A
CYS
270
1
AB4
12
A
GLY
293
A
GLY
293
HELX_P
A
TYR
314
A
TYR
314
1
AB5
22
A
ASP
318
A
ASP
318
HELX_P
A
PHE
322
A
PHE
322
5
AB6
5
A
ASP
340
A
ASP
340
HELX_P
A
GLY
350
A
GLY
350
1
AB7
11
A
PRO
394
A
PRO
394
HELX_P
A
ARG
403
A
ARG
403
1
AB8
10
A
ASP
407
A
ASP
407
HELX_P
A
LYS
409
A
LYS
409
5
AB9
3
A
ASN
410
A
ASN
410
HELX_P
A
TRP
423
A
TRP
423
1
AC1
14
A
GLY
426
A
GLY
426
HELX_P
A
ARG
438
A
ARG
438
1
AC2
13
A
VAL
440
A
VAL
440
HELX_P
A
CYS
445
A
CYS
445
1
AC3
6
A
ALA
450
A
ALA
450
HELX_P
A
PHE
462
A
PHE
462
1
AC4
13
TRANSFERASE
Polymerase, Picornavirus, Coxsackievirus, GPC-N143, inhibitor, TRANSFERASE, VIRAL PROTEIN
A
TYR
118
A
TYR
118
1
A
PRO
119
A
PRO
119
2.03
Q5UEA2_9ENTO
UNP
1
1724
Q5UEA2
GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRSGDPRLKANFEEAIFSKYIGNVNTHVDEYMLEAVDH
YAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPYVALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKD
ELRSIEKVAKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS
LSPVWFACLKMLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLD
QFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADKGECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHE
SIRWTKDPKNTQDHVRSLCLLAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSF
1724
2185
4Y34
1
462
Q5UEA2
A
1
1
462
1
LEU
conflict
ILE
252
4Y34
A
Q5UEA2
UNP
1975
252
1
expression tag
HIS
463
4Y34
A
Q5UEA2
UNP
463
1
expression tag
HIS
464
4Y34
A
Q5UEA2
UNP
464
1
expression tag
HIS
465
4Y34
A
Q5UEA2
UNP
465
1
expression tag
HIS
466
4Y34
A
Q5UEA2
UNP
466
1
expression tag
HIS
467
4Y34
A
Q5UEA2
UNP
467
5
2
2
4
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
2
A
GLU
2
A
SER
8
A
SER
8
A
LYS
279
A
LYS
279
A
ARG
284
A
ARG
284
A
ASN
271
A
ASN
271
A
LEU
275
A
LEU
275
A
MET
154
A
MET
154
A
VAL
158
A
VAL
158
A
LEU
175
A
LEU
175
A
ALA
178
A
ALA
178
A
GLU
26
A
GLU
26
A
PRO
27
A
PRO
27
A
TRP
404
A
TRP
404
A
THR
405
A
THR
405
A
GLU
39
A
GLU
39
A
PRO
40
A
PRO
40
A
LEU
162
A
LEU
162
A
ARG
163
A
ARG
163
A
ARG
323
A
ARG
323
A
TYR
327
A
TYR
327
A
ASP
330
A
ASP
330
A
TYR
335
A
TYR
335
A
HIS
228
A
HIS
228
A
TYR
234
A
TYR
234
A
MET
355
A
MET
355
A
THR
356
A
THR
356
A
TYR
378
A
TYR
378
A
ALA
381
A
ALA
381
A
VAL
389
A
VAL
389
A
VAL
392
A
VAL
392
binding site for residue 45Z A 501
A
45Z
501
Software
13
binding site for residue SO4 A 502
A
SO4
502
Software
2
binding site for residue SO4 A 503
A
SO4
503
Software
3
binding site for residue SO4 A 504
A
SO4
504
Software
4
binding site for residue GOL A 505
A
GOL
505
Software
4
binding site for residue SO4 A 506
A
SO4
506
Software
4
binding site for residue GOL A 507
A
GOL
507
Software
4
binding site for residue GOL A 508
A
GOL
508
Software
2
binding site for residue GOL A 509
A
GOL
509
Software
6
binding site for residue SO4 A 510
A
SO4
510
Software
3
A
LEU
110
A
LEU
110
13
1_555
A
ASP
111
A
ASP
111
13
1_555
A
THR
114
A
THR
114
13
1_555
A
ARG
188
A
ARG
188
13
1_555
A
TYR
195
A
TYR
195
13
1_555
A
HIS
199
A
HIS
199
13
1_555
A
GLY
290
A
GLY
290
13
1_555
A
CYS
291
A
CYS
291
13
1_555
A
SER
292
A
SER
292
13
1_555
A
GLY
293
A
GLY
293
13
1_555
A
THR
294
A
THR
294
13
1_555
A
SER
295
A
SER
295
13
1_555
A
TYR
327
A
TYR
327
13
1_555
A
ARG
174
A
ARG
174
2
1_555
A
GLY
236
A
GLY
236
2
1_555
A
ARG
416
A
ARG
416
3
1_555
A
PRO
449
A
PRO
449
3
1_555
A
HOH
624
L
HOH
3
1_555
A
GLN
384
A
GLN
384
4
1_555
A
TYR
385
A
TYR
385
4
1_555
A
LYS
409
A
LYS
409
4
6_465
A
ARG
455
A
ARG
455
4
1_555
A
LYS
38
A
LYS
38
4
1_555
A
ARG
163
A
ARG
163
4
1_555
A
SER
164
A
SER
164
4
1_555
A
HOH
651
L
HOH
4
1_555
A
LYS
38
A
LYS
38
4
1_555
A
LYS
376
A
LYS
376
4
1_555
A
ASP
397
A
ASP
397
4
1_555
A
GOL
508
I
GOL
4
1_555
A
THR
405
A
THR
405
4
1_555
A
LYS
406
A
LYS
406
4
1_555
A
ASP
407
A
ASP
407
4
1_555
A
HIS
414
A
HIS
414
4
1_555
A
SER
401
A
SER
401
2
1_555
A
SO4
506
G
SO4
2
1_555
A
VAL
29
A
VAL
29
6
6_465
A
TYR
385
A
TYR
385
6
1_555
A
LEU
388
A
LEU
388
6
1_555
A
PRO
408
A
PRO
408
6
6_465
A
LEU
459
A
LEU
459
6
1_555
A
HIS
463
A
HIS
463
6
1_555
A
GLY
426
A
GLY
426
3
1_555
A
GLU
427
A
GLU
427
3
1_555
A
HIS
428
A
HIS
428
3
1_555
96
P 43 21 2