0.014131
0.000000
0.000000
0.000000
0.014131
0.000000
0.000000
0.000000
0.014821
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
70.766
70.766
67.473
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a DUF3829 family protein (BVU_3067) from Bacteroides vulgatus ATCC 8482 at 1.80 A resolution
100
1
Vertical focusing mirror; double crystal Si(111) monochromator
CCD
2015-02-04
MARMOSAIC 325 mm CCD
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
BL14-1
SSRL
0.9792
SYNCHROTRON
SSRL BEAMLINE BL14-1
19562.418
DUF3829 family protein
1
man
polymer
18.015
water
184
nat
water
no
yes
GSHV(MSE)DSSS(MSE)SVENANEV(MSE)KYYDTSLKILKDLVNENEIKAVLGYLDQK(MSE)PVDSLPVVSQPVVSV
QDTVFVSNPGNYFSENDRQNLKENYGRLFRSISAFYENYKTYRLY(MSE)QDQSYKKDNNALADKIRKEELLLSIALSEY
KQVIFDILTPIVEGAKITLTPIKGNVKDK
GSHVMDSSSMSVENANEVMKYYDTSLKILKDLVNENEIKAVLGYLDQKMPVDSLPVVSQPVVSVQDTVFVSNPGNYFSEN
DRQNLKENYGRLFRSISAFYENYKTYRLYMQDQSYKKDNNALADKIRKEELLLSIALSEYKQVIFDILTPIVEGAKITLT
PIKGNVKDK
A
JCSG-385767
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 8482 / DSM 1447 / NCTC 11154
Bacteria
sample
1
169
BVU_3067
435590
Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
562
Escherichia Coli
PB1
Plasmid
Biological sequence
SpeedET
1
2.16
43.03
VAPOR DIFFUSION, SITTING DROP
9.0
2.40M ammonium sulfate, 0.1M Bicine pH 9.0
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
entity_src_gen
pdbx_struct_oper_list
software
citation_author
repository
Initial release
Derived calculations
Refinement description
Source and taxonomy
Database references
1
0
2015-03-18
1
1
2017-11-22
1
2
2018-01-24
_entity_src_gen.pdbx_alt_source_flag
_pdbx_struct_oper_list.symmetry_operation
_software.classification
_citation_author.name
Y
RCSB
Y
RCSB
2015-03-03
REL
REL
HOH
water
HOH
257
2
HOH
HOH
201
A
HOH
259
2
HOH
HOH
202
A
HOH
208
2
HOH
HOH
203
A
HOH
263
2
HOH
HOH
204
A
HOH
260
2
HOH
HOH
205
A
HOH
207
2
HOH
HOH
206
A
HOH
300
2
HOH
HOH
207
A
HOH
226
2
HOH
HOH
208
A
HOH
364
2
HOH
HOH
209
A
HOH
246
2
HOH
HOH
210
A
HOH
209
2
HOH
HOH
211
A
HOH
353
2
HOH
HOH
212
A
HOH
233
2
HOH
HOH
213
A
HOH
253
2
HOH
HOH
214
A
HOH
237
2
HOH
HOH
215
A
HOH
268
2
HOH
HOH
216
A
HOH
202
2
HOH
HOH
217
A
HOH
205
2
HOH
HOH
218
A
HOH
301
2
HOH
HOH
219
A
HOH
229
2
HOH
HOH
220
A
HOH
228
2
HOH
HOH
221
A
HOH
278
2
HOH
HOH
222
A
HOH
356
2
HOH
HOH
223
A
HOH
281
2
HOH
HOH
224
A
HOH
234
2
HOH
HOH
225
A
HOH
276
2
HOH
HOH
226
A
HOH
215
2
HOH
HOH
227
A
HOH
262
2
HOH
HOH
228
A
HOH
326
2
HOH
HOH
229
A
HOH
235
2
HOH
HOH
230
A
HOH
265
2
HOH
HOH
231
A
HOH
219
2
HOH
HOH
232
A
HOH
221
2
HOH
HOH
233
A
HOH
212
2
HOH
HOH
234
A
HOH
384
2
HOH
HOH
235
A
HOH
232
2
HOH
HOH
236
A
HOH
241
2
HOH
HOH
237
A
HOH
360
2
HOH
HOH
238
A
HOH
374
2
HOH
HOH
239
A
HOH
383
2
HOH
HOH
240
A
HOH
222
2
HOH
HOH
241
A
HOH
299
2
HOH
HOH
242
A
HOH
254
2
HOH
HOH
243
A
HOH
289
2
HOH
HOH
244
A
HOH
236
2
HOH
HOH
245
A
HOH
304
2
HOH
HOH
246
A
HOH
379
2
HOH
HOH
247
A
HOH
218
2
HOH
HOH
248
A
HOH
220
2
HOH
HOH
249
A
HOH
269
2
HOH
HOH
250
A
HOH
306
2
HOH
HOH
251
A
HOH
275
2
HOH
HOH
252
A
HOH
327
2
HOH
HOH
253
A
HOH
216
2
HOH
HOH
254
A
HOH
242
2
HOH
HOH
255
A
HOH
256
2
HOH
HOH
256
A
HOH
211
2
HOH
HOH
257
A
HOH
363
2
HOH
HOH
258
A
HOH
358
2
HOH
HOH
259
A
HOH
258
2
HOH
HOH
260
A
HOH
321
2
HOH
HOH
261
A
HOH
361
2
HOH
HOH
262
A
HOH
347
2
HOH
HOH
263
A
HOH
355
2
HOH
HOH
264
A
HOH
328
2
HOH
HOH
265
A
HOH
303
2
HOH
HOH
266
A
HOH
322
2
HOH
HOH
267
A
HOH
342
2
HOH
HOH
268
A
HOH
340
2
HOH
HOH
269
A
HOH
344
2
HOH
HOH
270
A
HOH
352
2
HOH
HOH
271
A
HOH
330
2
HOH
HOH
272
A
HOH
296
2
HOH
HOH
273
A
HOH
357
2
HOH
HOH
274
A
HOH
310
2
HOH
HOH
275
A
HOH
365
2
HOH
HOH
276
A
HOH
346
2
HOH
HOH
277
A
HOH
298
2
HOH
HOH
278
A
HOH
362
2
HOH
HOH
279
A
HOH
311
2
HOH
HOH
280
A
HOH
280
2
HOH
HOH
281
A
HOH
206
2
HOH
HOH
282
A
HOH
285
2
HOH
HOH
283
A
HOH
244
2
HOH
HOH
284
A
HOH
312
2
HOH
HOH
285
A
HOH
380
2
HOH
HOH
286
A
HOH
295
2
HOH
HOH
287
A
HOH
331
2
HOH
HOH
288
A
HOH
252
2
HOH
HOH
289
A
HOH
333
2
HOH
HOH
290
A
HOH
307
2
HOH
HOH
291
A
HOH
288
2
HOH
HOH
292
A
HOH
376
2
HOH
HOH
293
A
HOH
315
2
HOH
HOH
294
A
HOH
283
2
HOH
HOH
295
A
HOH
338
2
HOH
HOH
296
A
HOH
359
2
HOH
HOH
297
A
HOH
201
2
HOH
HOH
298
A
HOH
203
2
HOH
HOH
299
A
HOH
204
2
HOH
HOH
300
A
HOH
210
2
HOH
HOH
301
A
HOH
213
2
HOH
HOH
302
A
HOH
214
2
HOH
HOH
303
A
HOH
217
2
HOH
HOH
304
A
HOH
223
2
HOH
HOH
305
A
HOH
224
2
HOH
HOH
306
A
HOH
225
2
HOH
HOH
307
A
HOH
227
2
HOH
HOH
308
A
HOH
230
2
HOH
HOH
309
A
HOH
231
2
HOH
HOH
310
A
HOH
238
2
HOH
HOH
311
A
HOH
239
2
HOH
HOH
312
A
HOH
240
2
HOH
HOH
313
A
HOH
243
2
HOH
HOH
314
A
HOH
245
2
HOH
HOH
315
A
HOH
247
2
HOH
HOH
316
A
HOH
248
2
HOH
HOH
317
A
HOH
249
2
HOH
HOH
318
A
HOH
250
2
HOH
HOH
319
A
HOH
251
2
HOH
HOH
320
A
HOH
255
2
HOH
HOH
321
A
HOH
261
2
HOH
HOH
322
A
HOH
264
2
HOH
HOH
323
A
HOH
266
2
HOH
HOH
324
A
HOH
267
2
HOH
HOH
325
A
HOH
270
2
HOH
HOH
326
A
HOH
271
2
HOH
HOH
327
A
HOH
272
2
HOH
HOH
328
A
HOH
273
2
HOH
HOH
329
A
HOH
274
2
HOH
HOH
330
A
HOH
277
2
HOH
HOH
331
A
HOH
279
2
HOH
HOH
332
A
HOH
282
2
HOH
HOH
333
A
HOH
284
2
HOH
HOH
334
A
HOH
286
2
HOH
HOH
335
A
HOH
287
2
HOH
HOH
336
A
HOH
290
2
HOH
HOH
337
A
HOH
291
2
HOH
HOH
338
A
HOH
292
2
HOH
HOH
339
A
HOH
293
2
HOH
HOH
340
A
HOH
294
2
HOH
HOH
341
A
HOH
297
2
HOH
HOH
342
A
HOH
302
2
HOH
HOH
343
A
HOH
305
2
HOH
HOH
344
A
HOH
308
2
HOH
HOH
345
A
HOH
309
2
HOH
HOH
346
A
HOH
313
2
HOH
HOH
347
A
HOH
314
2
HOH
HOH
348
A
HOH
316
2
HOH
HOH
349
A
HOH
317
2
HOH
HOH
350
A
HOH
318
2
HOH
HOH
351
A
HOH
319
2
HOH
HOH
352
A
HOH
320
2
HOH
HOH
353
A
HOH
323
2
HOH
HOH
354
A
HOH
324
2
HOH
HOH
355
A
HOH
325
2
HOH
HOH
356
A
HOH
329
2
HOH
HOH
357
A
HOH
332
2
HOH
HOH
358
A
HOH
334
2
HOH
HOH
359
A
HOH
335
2
HOH
HOH
360
A
HOH
336
2
HOH
HOH
361
A
HOH
337
2
HOH
HOH
362
A
HOH
339
2
HOH
HOH
363
A
HOH
341
2
HOH
HOH
364
A
HOH
343
2
HOH
HOH
365
A
HOH
345
2
HOH
HOH
366
A
HOH
348
2
HOH
HOH
367
A
HOH
349
2
HOH
HOH
368
A
HOH
350
2
HOH
HOH
369
A
HOH
351
2
HOH
HOH
370
A
HOH
354
2
HOH
HOH
371
A
HOH
366
2
HOH
HOH
372
A
HOH
367
2
HOH
HOH
373
A
HOH
368
2
HOH
HOH
374
A
HOH
369
2
HOH
HOH
375
A
HOH
370
2
HOH
HOH
376
A
HOH
371
2
HOH
HOH
377
A
HOH
372
2
HOH
HOH
378
A
HOH
373
2
HOH
HOH
379
A
HOH
375
2
HOH
HOH
380
A
HOH
377
2
HOH
HOH
381
A
HOH
378
2
HOH
HOH
382
A
HOH
381
2
HOH
HOH
383
A
HOH
382
2
HOH
HOH
384
A
n
1
26
A
n
2
27
A
n
3
28
A
n
4
29
A
n
5
30
A
n
6
31
A
n
7
32
A
n
8
33
A
SER
34
n
9
SER
34
A
MSE
35
n
10
MSE
35
A
SER
36
n
11
SER
36
A
VAL
37
n
12
VAL
37
A
GLU
38
n
13
GLU
38
A
ASN
39
n
14
ASN
39
A
ALA
40
n
15
ALA
40
A
ASN
41
n
16
ASN
41
A
GLU
42
n
17
GLU
42
A
VAL
43
n
18
VAL
43
A
MSE
44
n
19
MSE
44
A
LYS
45
n
20
LYS
45
A
TYR
46
n
21
TYR
46
A
TYR
47
n
22
TYR
47
A
ASP
48
n
23
ASP
48
A
THR
49
n
24
THR
49
A
SER
50
n
25
SER
50
A
LEU
51
n
26
LEU
51
A
LYS
52
n
27
LYS
52
A
ILE
53
n
28
ILE
53
A
LEU
54
n
29
LEU
54
A
LYS
55
n
30
LYS
55
A
ASP
56
n
31
ASP
56
A
LEU
57
n
32
LEU
57
A
VAL
58
n
33
VAL
58
A
ASN
59
n
34
ASN
59
A
GLU
60
n
35
GLU
60
A
ASN
61
n
36
ASN
61
A
GLU
62
n
37
GLU
62
A
ILE
63
n
38
ILE
63
A
LYS
64
n
39
LYS
64
A
ALA
65
n
40
ALA
65
A
VAL
66
n
41
VAL
66
A
LEU
67
n
42
LEU
67
A
GLY
68
n
43
GLY
68
A
TYR
69
n
44
TYR
69
A
LEU
70
n
45
LEU
70
A
ASP
71
n
46
ASP
71
A
GLN
72
n
47
GLN
72
A
LYS
73
n
48
LYS
73
A
MSE
74
n
49
MSE
74
A
PRO
75
n
50
PRO
75
A
VAL
76
n
51
VAL
76
A
ASP
77
n
52
ASP
77
A
SER
78
n
53
SER
78
A
LEU
79
n
54
LEU
79
A
PRO
80
n
55
PRO
80
A
VAL
81
n
56
VAL
81
A
VAL
82
n
57
VAL
82
A
SER
83
n
58
SER
83
A
GLN
84
n
59
GLN
84
A
PRO
85
n
60
PRO
85
A
VAL
86
n
61
VAL
86
A
VAL
87
n
62
VAL
87
A
SER
88
n
63
SER
88
A
VAL
89
n
64
VAL
89
A
GLN
90
n
65
GLN
90
A
ASP
91
n
66
ASP
91
A
THR
92
n
67
THR
92
A
VAL
93
n
68
VAL
93
A
PHE
94
n
69
PHE
94
A
VAL
95
n
70
VAL
95
A
SER
96
n
71
SER
96
A
ASN
97
n
72
ASN
97
A
PRO
98
n
73
PRO
98
A
GLY
99
n
74
GLY
99
A
ASN
100
n
75
ASN
100
A
TYR
101
n
76
TYR
101
A
PHE
102
n
77
PHE
102
A
SER
103
n
78
SER
103
A
GLU
104
n
79
GLU
104
A
ASN
105
n
80
ASN
105
A
ASP
106
n
81
ASP
106
A
ARG
107
n
82
ARG
107
A
GLN
108
n
83
GLN
108
A
ASN
109
n
84
ASN
109
A
LEU
110
n
85
LEU
110
A
LYS
111
n
86
LYS
111
A
GLU
112
n
87
GLU
112
A
ASN
113
n
88
ASN
113
A
TYR
114
n
89
TYR
114
A
GLY
115
n
90
GLY
115
A
ARG
116
n
91
ARG
116
A
LEU
117
n
92
LEU
117
A
PHE
118
n
93
PHE
118
A
ARG
119
n
94
ARG
119
A
SER
120
n
95
SER
120
A
ILE
121
n
96
ILE
121
A
SER
122
n
97
SER
122
A
ALA
123
n
98
ALA
123
A
PHE
124
n
99
PHE
124
A
TYR
125
n
100
TYR
125
A
GLU
126
n
101
GLU
126
A
ASN
127
n
102
ASN
127
A
TYR
128
n
103
TYR
128
A
LYS
129
n
104
LYS
129
A
THR
130
n
105
THR
130
A
TYR
131
n
106
TYR
131
A
ARG
132
n
107
ARG
132
A
LEU
133
n
108
LEU
133
A
TYR
134
n
109
TYR
134
A
MSE
135
n
110
MSE
135
A
GLN
136
n
111
GLN
136
A
ASP
137
n
112
ASP
137
A
GLN
138
n
113
GLN
138
A
SER
139
n
114
SER
139
A
TYR
140
n
115
TYR
140
A
LYS
141
n
116
LYS
141
A
LYS
142
n
117
LYS
142
A
ASP
143
n
118
ASP
143
A
ASN
144
n
119
ASN
144
A
ASN
145
n
120
ASN
145
A
ALA
146
n
121
ALA
146
A
LEU
147
n
122
LEU
147
A
ALA
148
n
123
ALA
148
A
ASP
149
n
124
ASP
149
A
LYS
150
n
125
LYS
150
A
ILE
151
n
126
ILE
151
A
ARG
152
n
127
ARG
152
A
LYS
153
n
128
LYS
153
A
GLU
154
n
129
GLU
154
A
GLU
155
n
130
GLU
155
A
LEU
156
n
131
LEU
156
A
LEU
157
n
132
LEU
157
A
LEU
158
n
133
LEU
158
A
SER
159
n
134
SER
159
A
ILE
160
n
135
ILE
160
A
ALA
161
n
136
ALA
161
A
LEU
162
n
137
LEU
162
A
SER
163
n
138
SER
163
A
GLU
164
n
139
GLU
164
A
TYR
165
n
140
TYR
165
A
LYS
166
n
141
LYS
166
A
GLN
167
n
142
GLN
167
A
VAL
168
n
143
VAL
168
A
ILE
169
n
144
ILE
169
A
PHE
170
n
145
PHE
170
A
ASP
171
n
146
ASP
171
A
ILE
172
n
147
ILE
172
A
LEU
173
n
148
LEU
173
A
THR
174
n
149
THR
174
A
PRO
175
n
150
PRO
175
A
ILE
176
n
151
ILE
176
A
VAL
177
n
152
VAL
177
A
GLU
178
n
153
GLU
178
A
GLY
179
n
154
GLY
179
A
ALA
180
n
155
ALA
180
A
LYS
181
n
156
LYS
181
A
ILE
182
n
157
ILE
182
A
THR
183
n
158
THR
183
A
LEU
184
n
159
LEU
184
A
THR
185
n
160
THR
185
A
PRO
186
n
161
PRO
186
A
n
162
187
A
n
163
188
A
n
164
189
A
n
165
190
A
n
166
191
A
n
167
192
A
n
168
193
A
n
169
194
A
1.7630
-1.8860
-0.2327
1.9631
0.1342
0.8344
-0.1163
-0.1330
0.2104
0.1240
0.1746
-0.2959
-0.1108
-0.0296
-0.0583
-0.0520
-0.0055
-0.0191
-0.0450
-0.0260
-0.0273
refined
22.4158
-2.5951
17.8809
X-RAY DIFFRACTION
A
34
A
186
X-RAY DIFFRACTION
1
{A|34 - 186}
author_and_software_defined_assembly
PISA
1
monomeric
0
0
9060
A
MSE
35
modified residue
A
MSE
10
MET
A
MSE
44
modified residue
A
MSE
19
MET
A
MSE
74
modified residue
A
MSE
49
MET
A
MSE
135
modified residue
A
MSE
110
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
OG
SER
34
A
OG
SER
9
1
Y
1
A
CG
MSE
35
A
CG
MSE
10
1
Y
1
A
SE
MSE
35
A
SE
MSE
10
1
Y
1
A
CE
MSE
35
A
CE
MSE
10
1
Y
1
A
GLY
26
A
GLY
1
1
Y
1
A
SER
27
A
SER
2
1
Y
1
A
HIS
28
A
HIS
3
1
Y
1
A
VAL
29
A
VAL
4
1
Y
1
A
MSE
30
A
MSE
5
1
Y
1
A
ASP
31
A
ASP
6
1
Y
1
A
SER
32
A
SER
7
1
Y
1
A
SER
33
A
SER
8
1
Y
1
A
ILE
187
A
ILE
162
1
Y
1
A
LYS
188
A
LYS
163
1
Y
1
A
GLY
189
A
GLY
164
1
Y
1
A
ASN
190
A
ASN
165
1
Y
1
A
VAL
191
A
VAL
166
1
Y
1
A
LYS
192
A
LYS
167
1
Y
1
A
ASP
193
A
ASP
168
1
Y
1
A
LYS
194
A
LYS
169
1
Y
116.070
28.9582
9.670
-0.2102
0.0000
0.0000
-0.2102
0.0000
0.4204
0.9532
0.9459
1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE SAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 3. A UNMODELED DENSITY BLOB AT THE TWO-FOLD AXIS (NEAR A62) COULD BE EXPLAINED BY A BENZOIC ACID-LIKE COMPOUND.
0.1947
0.1732
0.1743
1.8000
28.652
832
16437
5.0600
99.9900
1.000
0.300
RANDOM
1
THROUGHOUT
0.000
SAD
0.202
1.8000
28.652
184
1420
0
0
1236
658
SINUSOIDAL
2.000
45
HARMONIC
2.000
195
HARMONIC
5.000
1325
HARMONIC
20.000
174
SEMIHARMONIC
5.000
1726
SEMIHARMONIC
4.000
0.010
1325
HARMONIC
2.000
0.840
1809
HARMONIC
2.000
2.640
2.510
0.2274
0.1972
0.1987
1.9200
145
2768
2913
8
4.9800
99.9900
21.665
0.999
1.80
28.652
4YJW
16483
-3.000
0.080
0.088
1
16.130
187648
6.17
100.000
0.651
0.739
1.800
1.860
1.9
12263
2859
2858
0.843
1
100.000
0.817
0.605
1.860
1.940
2.9
19008
3223
3223
0.664
100.000
0.909
0.427
1.940
2.030
4.4
19963
3117
3117
0.465
100.000
0.961
0.268
2.030
2.130
6.9
18244
2843
2843
0.291
100.000
0.983
0.182
2.130
2.270
10.0
20532
3194
3194
0.199
100.000
0.991
0.139
2.270
2.440
12.8
19050
2952
2952
0.151
100.000
0.994
0.105
2.440
2.690
16.7
19929
3085
3085
0.114
100.000
0.997
0.074
2.690
3.070
22.6
19338
2992
2992
0.080
100.000
0.999
0.043
3.070
3.870
35.6
19617
3057
3057
0.047
100.000
0.999
0.031
3.870
28.652
47.0
19704
3084
3073
0.034
99.600
data extraction
PDB_EXTRACT
3.10
phasing
SHELX
phasing
SHARP
data scaling
XDS
November 3, 2014 BUILT=20141118
refinement
BUSTER-TNT
2.10.2
data scaling
XSCALE
phasing
SHELXD
refinement
BUSTER
2.10.2
DUF3829 family protein
Crystal structure of a DUF3829 family protein (BVU_3067) from Bacteroides vulgatus ATCC 8482 at 1.80 A resolution
1
N
N
2
N
N
A
SER
34
A
SER
9
HELX_P
A
VAL
58
A
VAL
33
1
AA1
25
A
ASN
59
A
ASN
34
HELX_P
A
LEU
70
A
LEU
45
1
AA2
12
A
PRO
75
A
PRO
50
HELX_P
A
LEU
79
A
LEU
54
5
AA3
5
A
SER
88
A
SER
63
HELX_P
A
ASN
97
A
ASN
72
1
AA4
10
A
SER
103
A
SER
78
HELX_P
A
ASP
137
A
ASP
112
1
AA5
35
A
GLN
138
A
GLN
113
HELX_P
A
ASP
143
A
ASP
118
1
AA6
6
A
ASN
145
A
ASN
120
HELX_P
A
THR
185
A
THR
160
1
AA7
41
covale
1.356
both
A
SER
34
A
C
SER
9
1_555
A
MSE
35
A
N
MSE
10
1_555
covale
1.342
both
A
MSE
35
A
C
MSE
10
1_555
A
SER
36
A
N
SER
11
1_555
covale
1.350
both
A
VAL
43
A
C
VAL
18
1_555
A
MSE
44
A
N
MSE
19
1_555
covale
1.340
both
A
MSE
44
A
C
MSE
19
1_555
A
LYS
45
A
N
LYS
20
1_555
covale
1.338
both
A
LYS
73
A
C
LYS
48
1_555
A
MSE
74
A
N
MSE
49
1_555
covale
1.353
both
A
MSE
74
A
C
MSE
49
1_555
A
PRO
75
A
N
PRO
50
1_555
covale
1.353
both
A
TYR
134
A
C
TYR
109
1_555
A
MSE
135
A
N
MSE
110
1_555
covale
1.343
both
A
MSE
135
A
C
MSE
110
1_555
A
GLN
136
A
N
GLN
111
1_555
STRUCTURAL GENOMICS UNKNOWN FUNCTION
All alpha protein, PF12889 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION, STRUCTURAL GENOMICS UNKNOWN FUNCTION
A6L4U0_BACV8
UNP
1
28
A6L4U0
HVMDSSSMSVENANEVMKYYDTSLKILKDLVNENEIKAVLGYLDQKMPVDSLPVVSQPVVSVQDTVFVSNPGNYFSENDR
QNLKENYGRLFRSISAFYENYKTYRLYMQDQSYKKDNNALADKIRKEELLLSIALSEYKQVIFDILTPIVEGAKITLTPI
KGNVKDK
28
194
4YJW
28
194
A6L4U0
A
1
3
169
1
expression tag
GLY
26
4YJW
A
A6L4U0
UNP
1
1
expression tag
SER
27
4YJW
A
A6L4U0
UNP
2
92
P 41 21 2