0.021640
0.000000
0.002818
0.000000
0.022017
0.000000
0.000000
0.000000
0.014270
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.000
97.420
90.000
46.210
45.420
70.670
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a thioredoxin-like protein (BACCAC_02376) from Bacteroides caccae ATCC 43185 at 1.90 A resolution
10.2210/pdb4yod/pdb
pdb_00004yod
100
1
Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator
PIXEL
2015-01-15
DECTRIS PILATUS 6M
double crystal Si(111)
MAD
M
x-ray
1
0.9184
1.0
0.9796
1.0
0.9795
1.0
BL12-2
SSRL
0.9184,0.9796,0.9795
SYNCHROTRON
SSRL BEAMLINE BL12-2
33449.629
thioredoxin-like protein
1
man
polymer
18.015
water
197
nat
water
no
yes
GQTKNEVSQDTIKTFTLPAIPQI(MSE)VAPEQRAEFLVKHYWDNVNFADTNYIHHPEITEQAWVDYCDILNHVPLKTAQ
EAIRKTIDRTNVDKKVFAYITDLADKYLYDPNSP(MSE)RNEEFYIPVLEA(MSE)AASPVLEEIEKVRPKARLELAQKN
RIGTKAINFTYTLASGAQGSLYQLNADYLLLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKH
LNEFPKEWINGYDKKFTIKEKQLYDLKAIPTLYLLNKEKTVLLKDATTQAIEEYL(MSE)IHQ
GQTKNEVSQDTIKTFTLPAIPQIMVAPEQRAEFLVKHYWDNVNFADTNYIHHPEITEQAWVDYCDILNHVPLKTAQEAIR
KTIDRTNVDKKVFAYITDLADKYLYDPNSPMRNEEFYIPVLEAMAASPVLEEIEKVRPKARLELAQKNRIGTKAINFTYT
LASGAQGSLYQLNADYLLLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKHLNEFPKEWINGY
DKKFTIKEKQLYDLKAIPTLYLLNKEKTVLLKDATTQAIEEYLMIHQ
A
JCSG-419026
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
287
BACCAC_02376
411901
Bacteroides caccae ATCC 43185
562
Escherichia Coli
PB1
Plasmid
Biological sequence
SpeedET
1
2.20
44.06
VAPOR DIFFUSION, SITTING DROP
9.0
30% polyethylene glycol 6000, 0.1M Bicine pH 9.0
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
entity_src_gen
pdbx_struct_oper_list
software
citation_author
database_2
struct_ref_seq_dif
repository
Initial release
Derived calculations
Refinement description
Source and taxonomy
Database references
Database references
1
0
2015-03-25
1
1
2017-11-22
1
2
2018-01-24
1
3
2023-02-01
_entity_src_gen.pdbx_alt_source_flag
_pdbx_struct_oper_list.symmetry_operation
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2015-03-11
REL
REL
HOH
water
THE CONSTRUCT (27-312) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
HOH
449
2
HOH
HOH
401
A
HOH
370
2
HOH
HOH
402
A
HOH
397
2
HOH
HOH
403
A
HOH
342
2
HOH
HOH
404
A
HOH
395
2
HOH
HOH
405
A
HOH
364
2
HOH
HOH
406
A
HOH
372
2
HOH
HOH
407
A
HOH
407
2
HOH
HOH
408
A
HOH
494
2
HOH
HOH
409
A
HOH
349
2
HOH
HOH
410
A
HOH
441
2
HOH
HOH
411
A
HOH
451
2
HOH
HOH
412
A
HOH
416
2
HOH
HOH
413
A
HOH
482
2
HOH
HOH
414
A
HOH
443
2
HOH
HOH
415
A
HOH
411
2
HOH
HOH
416
A
HOH
321
2
HOH
HOH
417
A
HOH
381
2
HOH
HOH
418
A
HOH
427
2
HOH
HOH
419
A
HOH
369
2
HOH
HOH
420
A
HOH
388
2
HOH
HOH
421
A
HOH
502
2
HOH
HOH
422
A
HOH
361
2
HOH
HOH
423
A
HOH
420
2
HOH
HOH
424
A
HOH
379
2
HOH
HOH
425
A
HOH
377
2
HOH
HOH
426
A
HOH
496
2
HOH
HOH
427
A
HOH
373
2
HOH
HOH
428
A
HOH
363
2
HOH
HOH
429
A
HOH
469
2
HOH
HOH
430
A
HOH
445
2
HOH
HOH
431
A
HOH
414
2
HOH
HOH
432
A
HOH
368
2
HOH
HOH
433
A
HOH
425
2
HOH
HOH
434
A
HOH
346
2
HOH
HOH
435
A
HOH
491
2
HOH
HOH
436
A
HOH
495
2
HOH
HOH
437
A
HOH
375
2
HOH
HOH
438
A
HOH
513
2
HOH
HOH
439
A
HOH
339
2
HOH
HOH
440
A
HOH
389
2
HOH
HOH
441
A
HOH
374
2
HOH
HOH
442
A
HOH
367
2
HOH
HOH
443
A
HOH
473
2
HOH
HOH
444
A
HOH
333
2
HOH
HOH
445
A
HOH
466
2
HOH
HOH
446
A
HOH
341
2
HOH
HOH
447
A
HOH
408
2
HOH
HOH
448
A
HOH
512
2
HOH
HOH
449
A
HOH
498
2
HOH
HOH
450
A
HOH
484
2
HOH
HOH
451
A
HOH
437
2
HOH
HOH
452
A
HOH
350
2
HOH
HOH
453
A
HOH
454
2
HOH
HOH
454
A
HOH
452
2
HOH
HOH
455
A
HOH
358
2
HOH
HOH
456
A
HOH
470
2
HOH
HOH
457
A
HOH
448
2
HOH
HOH
458
A
HOH
447
2
HOH
HOH
459
A
HOH
406
2
HOH
HOH
460
A
HOH
515
2
HOH
HOH
461
A
HOH
485
2
HOH
HOH
462
A
HOH
504
2
HOH
HOH
463
A
HOH
461
2
HOH
HOH
464
A
HOH
458
2
HOH
HOH
465
A
HOH
506
2
HOH
HOH
466
A
HOH
428
2
HOH
HOH
467
A
HOH
516
2
HOH
HOH
468
A
HOH
456
2
HOH
HOH
469
A
HOH
337
2
HOH
HOH
470
A
HOH
340
2
HOH
HOH
471
A
HOH
479
2
HOH
HOH
472
A
HOH
488
2
HOH
HOH
473
A
HOH
334
2
HOH
HOH
474
A
HOH
465
2
HOH
HOH
475
A
HOH
320
2
HOH
HOH
476
A
HOH
322
2
HOH
HOH
477
A
HOH
323
2
HOH
HOH
478
A
HOH
324
2
HOH
HOH
479
A
HOH
325
2
HOH
HOH
480
A
HOH
326
2
HOH
HOH
481
A
HOH
327
2
HOH
HOH
482
A
HOH
328
2
HOH
HOH
483
A
HOH
329
2
HOH
HOH
484
A
HOH
330
2
HOH
HOH
485
A
HOH
331
2
HOH
HOH
486
A
HOH
332
2
HOH
HOH
487
A
HOH
335
2
HOH
HOH
488
A
HOH
336
2
HOH
HOH
489
A
HOH
338
2
HOH
HOH
490
A
HOH
343
2
HOH
HOH
491
A
HOH
344
2
HOH
HOH
492
A
HOH
345
2
HOH
HOH
493
A
HOH
347
2
HOH
HOH
494
A
HOH
348
2
HOH
HOH
495
A
HOH
351
2
HOH
HOH
496
A
HOH
352
2
HOH
HOH
497
A
HOH
353
2
HOH
HOH
498
A
HOH
354
2
HOH
HOH
499
A
HOH
355
2
HOH
HOH
500
A
HOH
356
2
HOH
HOH
501
A
HOH
357
2
HOH
HOH
502
A
HOH
359
2
HOH
HOH
503
A
HOH
360
2
HOH
HOH
504
A
HOH
362
2
HOH
HOH
505
A
HOH
365
2
HOH
HOH
506
A
HOH
366
2
HOH
HOH
507
A
HOH
371
2
HOH
HOH
508
A
HOH
376
2
HOH
HOH
509
A
HOH
378
2
HOH
HOH
510
A
HOH
380
2
HOH
HOH
511
A
HOH
382
2
HOH
HOH
512
A
HOH
383
2
HOH
HOH
513
A
HOH
384
2
HOH
HOH
514
A
HOH
385
2
HOH
HOH
515
A
HOH
386
2
HOH
HOH
516
A
HOH
387
2
HOH
HOH
517
A
HOH
390
2
HOH
HOH
518
A
HOH
391
2
HOH
HOH
519
A
HOH
392
2
HOH
HOH
520
A
HOH
393
2
HOH
HOH
521
A
HOH
394
2
HOH
HOH
522
A
HOH
396
2
HOH
HOH
523
A
HOH
398
2
HOH
HOH
524
A
HOH
399
2
HOH
HOH
525
A
HOH
400
2
HOH
HOH
526
A
HOH
401
2
HOH
HOH
527
A
HOH
402
2
HOH
HOH
528
A
HOH
403
2
HOH
HOH
529
A
HOH
404
2
HOH
HOH
530
A
HOH
405
2
HOH
HOH
531
A
HOH
409
2
HOH
HOH
532
A
HOH
410
2
HOH
HOH
533
A
HOH
412
2
HOH
HOH
534
A
HOH
413
2
HOH
HOH
535
A
HOH
415
2
HOH
HOH
536
A
HOH
417
2
HOH
HOH
537
A
HOH
418
2
HOH
HOH
538
A
HOH
419
2
HOH
HOH
539
A
HOH
421
2
HOH
HOH
540
A
HOH
422
2
HOH
HOH
541
A
HOH
423
2
HOH
HOH
542
A
HOH
424
2
HOH
HOH
543
A
HOH
426
2
HOH
HOH
544
A
HOH
429
2
HOH
HOH
545
A
HOH
430
2
HOH
HOH
546
A
HOH
431
2
HOH
HOH
547
A
HOH
432
2
HOH
HOH
548
A
HOH
433
2
HOH
HOH
549
A
HOH
434
2
HOH
HOH
550
A
HOH
435
2
HOH
HOH
551
A
HOH
436
2
HOH
HOH
552
A
HOH
438
2
HOH
HOH
553
A
HOH
439
2
HOH
HOH
554
A
HOH
440
2
HOH
HOH
555
A
HOH
442
2
HOH
HOH
556
A
HOH
444
2
HOH
HOH
557
A
HOH
446
2
HOH
HOH
558
A
HOH
450
2
HOH
HOH
559
A
HOH
453
2
HOH
HOH
560
A
HOH
455
2
HOH
HOH
561
A
HOH
457
2
HOH
HOH
562
A
HOH
459
2
HOH
HOH
563
A
HOH
460
2
HOH
HOH
564
A
HOH
462
2
HOH
HOH
565
A
HOH
463
2
HOH
HOH
566
A
HOH
464
2
HOH
HOH
567
A
HOH
467
2
HOH
HOH
568
A
HOH
468
2
HOH
HOH
569
A
HOH
471
2
HOH
HOH
570
A
HOH
472
2
HOH
HOH
571
A
HOH
474
2
HOH
HOH
572
A
HOH
475
2
HOH
HOH
573
A
HOH
476
2
HOH
HOH
574
A
HOH
477
2
HOH
HOH
575
A
HOH
478
2
HOH
HOH
576
A
HOH
480
2
HOH
HOH
577
A
HOH
481
2
HOH
HOH
578
A
HOH
483
2
HOH
HOH
579
A
HOH
486
2
HOH
HOH
580
A
HOH
487
2
HOH
HOH
581
A
HOH
489
2
HOH
HOH
582
A
HOH
490
2
HOH
HOH
583
A
HOH
492
2
HOH
HOH
584
A
HOH
493
2
HOH
HOH
585
A
HOH
497
2
HOH
HOH
586
A
HOH
499
2
HOH
HOH
587
A
HOH
500
2
HOH
HOH
588
A
HOH
501
2
HOH
HOH
589
A
HOH
503
2
HOH
HOH
590
A
HOH
505
2
HOH
HOH
591
A
HOH
507
2
HOH
HOH
592
A
HOH
508
2
HOH
HOH
593
A
HOH
509
2
HOH
HOH
594
A
HOH
510
2
HOH
HOH
595
A
HOH
511
2
HOH
HOH
596
A
HOH
514
2
HOH
HOH
597
A
n
1
0
A
n
2
27
A
n
3
28
A
n
4
29
A
n
5
30
A
n
6
31
A
n
7
32
A
n
8
33
A
n
9
34
A
n
10
35
A
THR
36
n
11
THR
36
A
ILE
37
n
12
ILE
37
A
LYS
38
n
13
LYS
38
A
THR
39
n
14
THR
39
A
PHE
40
n
15
PHE
40
A
THR
41
n
16
THR
41
A
LEU
42
n
17
LEU
42
A
PRO
43
n
18
PRO
43
A
ALA
44
n
19
ALA
44
A
ILE
45
n
20
ILE
45
A
PRO
46
n
21
PRO
46
A
GLN
47
n
22
GLN
47
A
ILE
48
n
23
ILE
48
A
MSE
49
n
24
MSE
49
A
VAL
50
n
25
VAL
50
A
ALA
51
n
26
ALA
51
A
PRO
52
n
27
PRO
52
A
GLU
53
n
28
GLU
53
A
GLN
54
n
29
GLN
54
A
ARG
55
n
30
ARG
55
A
ALA
56
n
31
ALA
56
A
GLU
57
n
32
GLU
57
A
PHE
58
n
33
PHE
58
A
LEU
59
n
34
LEU
59
A
VAL
60
n
35
VAL
60
A
LYS
61
n
36
LYS
61
A
HIS
62
n
37
HIS
62
A
TYR
63
n
38
TYR
63
A
TRP
64
n
39
TRP
64
A
ASP
65
n
40
ASP
65
A
ASN
66
n
41
ASN
66
A
VAL
67
n
42
VAL
67
A
ASN
68
n
43
ASN
68
A
PHE
69
n
44
PHE
69
A
ALA
70
n
45
ALA
70
A
ASP
71
n
46
ASP
71
A
THR
72
n
47
THR
72
A
ASN
73
n
48
ASN
73
A
TYR
74
n
49
TYR
74
A
ILE
75
n
50
ILE
75
A
HIS
76
n
51
HIS
76
A
HIS
77
n
52
HIS
77
A
PRO
78
n
53
PRO
78
A
GLU
79
n
54
GLU
79
A
ILE
80
n
55
ILE
80
A
THR
81
n
56
THR
81
A
GLU
82
n
57
GLU
82
A
GLN
83
n
58
GLN
83
A
ALA
84
n
59
ALA
84
A
TRP
85
n
60
TRP
85
A
VAL
86
n
61
VAL
86
A
ASP
87
n
62
ASP
87
A
TYR
88
n
63
TYR
88
A
CYS
89
n
64
CYS
89
A
ASP
90
n
65
ASP
90
A
ILE
91
n
66
ILE
91
A
LEU
92
n
67
LEU
92
A
ASN
93
n
68
ASN
93
A
HIS
94
n
69
HIS
94
A
VAL
95
n
70
VAL
95
A
PRO
96
n
71
PRO
96
A
LEU
97
n
72
LEU
97
A
LYS
98
n
73
LYS
98
A
THR
99
n
74
THR
99
A
ALA
100
n
75
ALA
100
A
GLN
101
n
76
GLN
101
A
GLU
102
n
77
GLU
102
A
ALA
103
n
78
ALA
103
A
ILE
104
n
79
ILE
104
A
ARG
105
n
80
ARG
105
A
LYS
106
n
81
LYS
106
A
THR
107
n
82
THR
107
A
ILE
108
n
83
ILE
108
A
ASP
109
n
84
ASP
109
A
ARG
110
n
85
ARG
110
A
THR
111
n
86
THR
111
A
ASN
112
n
87
ASN
112
A
VAL
113
n
88
VAL
113
A
ASP
114
n
89
ASP
114
A
LYS
115
n
90
LYS
115
A
LYS
116
n
91
LYS
116
A
VAL
117
n
92
VAL
117
A
PHE
118
n
93
PHE
118
A
ALA
119
n
94
ALA
119
A
TYR
120
n
95
TYR
120
A
ILE
121
n
96
ILE
121
A
THR
122
n
97
THR
122
A
ASP
123
n
98
ASP
123
A
LEU
124
n
99
LEU
124
A
ALA
125
n
100
ALA
125
A
ASP
126
n
101
ASP
126
A
LYS
127
n
102
LYS
127
A
TYR
128
n
103
TYR
128
A
LEU
129
n
104
LEU
129
A
TYR
130
n
105
TYR
130
A
ASP
131
n
106
ASP
131
A
PRO
132
n
107
PRO
132
A
ASN
133
n
108
ASN
133
A
SER
134
n
109
SER
134
A
PRO
135
n
110
PRO
135
A
MSE
136
n
111
MSE
136
A
ARG
137
n
112
ARG
137
A
ASN
138
n
113
ASN
138
A
GLU
139
n
114
GLU
139
A
GLU
140
n
115
GLU
140
A
PHE
141
n
116
PHE
141
A
TYR
142
n
117
TYR
142
A
ILE
143
n
118
ILE
143
A
PRO
144
n
119
PRO
144
A
VAL
145
n
120
VAL
145
A
LEU
146
n
121
LEU
146
A
GLU
147
n
122
GLU
147
A
ALA
148
n
123
ALA
148
A
MSE
149
n
124
MSE
149
A
ALA
150
n
125
ALA
150
A
ALA
151
n
126
ALA
151
A
SER
152
n
127
SER
152
A
PRO
153
n
128
PRO
153
A
VAL
154
n
129
VAL
154
A
LEU
155
n
130
LEU
155
A
GLU
156
n
131
GLU
156
A
GLU
157
n
132
GLU
157
A
ILE
158
n
133
ILE
158
A
GLU
159
n
134
GLU
159
A
LYS
160
n
135
LYS
160
A
VAL
161
n
136
VAL
161
A
ARG
162
n
137
ARG
162
A
PRO
163
n
138
PRO
163
A
LYS
164
n
139
LYS
164
A
ALA
165
n
140
ALA
165
A
ARG
166
n
141
ARG
166
A
LEU
167
n
142
LEU
167
A
GLU
168
n
143
GLU
168
A
LEU
169
n
144
LEU
169
A
ALA
170
n
145
ALA
170
A
GLN
171
n
146
GLN
171
A
LYS
172
n
147
LYS
172
A
ASN
173
n
148
ASN
173
A
ARG
174
n
149
ARG
174
A
ILE
175
n
150
ILE
175
A
GLY
176
n
151
GLY
176
A
THR
177
n
152
THR
177
A
LYS
178
n
153
LYS
178
A
ALA
179
n
154
ALA
179
A
ILE
180
n
155
ILE
180
A
ASN
181
n
156
ASN
181
A
PHE
182
n
157
PHE
182
A
THR
183
n
158
THR
183
A
TYR
184
n
159
TYR
184
A
THR
185
n
160
THR
185
A
LEU
186
n
161
LEU
186
A
ALA
187
n
162
ALA
187
A
SER
188
n
163
SER
188
A
GLY
189
n
164
GLY
189
A
ALA
190
n
165
ALA
190
A
GLN
191
n
166
GLN
191
A
GLY
192
n
167
GLY
192
A
SER
193
n
168
SER
193
A
LEU
194
n
169
LEU
194
A
TYR
195
n
170
TYR
195
A
GLN
196
n
171
GLN
196
A
LEU
197
n
172
LEU
197
A
ASN
198
n
173
ASN
198
A
ALA
199
n
174
ALA
199
A
ASP
200
n
175
ASP
200
A
TYR
201
n
176
TYR
201
A
LEU
202
n
177
LEU
202
A
LEU
203
n
178
LEU
203
A
LEU
204
n
179
LEU
204
A
PHE
205
n
180
PHE
205
A
ILE
206
n
181
ILE
206
A
ASN
207
n
182
ASN
207
A
ASN
208
n
183
ASN
208
A
PRO
209
n
184
PRO
209
A
GLY
210
n
185
GLY
210
A
CYS
211
n
186
CYS
211
A
HIS
212
n
187
HIS
212
A
ALA
213
n
188
ALA
213
A
CYS
214
n
189
CYS
214
A
THR
215
n
190
THR
215
A
GLU
216
n
191
GLU
216
A
THR
217
n
192
THR
217
A
ILE
218
n
193
ILE
218
A
GLU
219
n
194
GLU
219
A
GLY
220
n
195
GLY
220
A
LEU
221
n
196
LEU
221
A
LYS
222
n
197
LYS
222
A
GLN
223
n
198
GLN
223
A
ALA
224
n
199
ALA
224
A
PRO
225
n
200
PRO
225
A
ILE
226
n
201
ILE
226
A
ILE
227
n
202
ILE
227
A
SER
228
n
203
SER
228
A
GLN
229
n
204
GLN
229
A
LEU
230
n
205
LEU
230
A
ILE
231
n
206
ILE
231
A
LYS
232
n
207
LYS
232
A
GLU
233
n
208
GLU
233
A
LYS
234
n
209
LYS
234
A
LYS
235
n
210
LYS
235
A
LEU
236
n
211
LEU
236
A
ILE
237
n
212
ILE
237
A
VAL
238
n
213
VAL
238
A
LEU
239
n
214
LEU
239
A
SER
240
n
215
SER
240
A
ILE
241
n
216
ILE
241
A
TYR
242
n
217
TYR
242
A
PRO
243
n
218
PRO
243
A
ASP
244
n
219
ASP
244
A
GLU
245
n
220
GLU
245
A
GLU
246
n
221
GLU
246
A
LEU
247
n
222
LEU
247
A
ASP
248
n
223
ASP
248
A
ASP
249
n
224
ASP
249
A
TRP
250
n
225
TRP
250
A
ARG
251
n
226
ARG
251
A
LYS
252
n
227
LYS
252
A
HIS
253
n
228
HIS
253
A
LEU
254
n
229
LEU
254
A
ASN
255
n
230
ASN
255
A
GLU
256
n
231
GLU
256
A
PHE
257
n
232
PHE
257
A
PRO
258
n
233
PRO
258
A
LYS
259
n
234
LYS
259
A
GLU
260
n
235
GLU
260
A
TRP
261
n
236
TRP
261
A
ILE
262
n
237
ILE
262
A
ASN
263
n
238
ASN
263
A
GLY
264
n
239
GLY
264
A
TYR
265
n
240
TYR
265
A
ASP
266
n
241
ASP
266
A
LYS
267
n
242
LYS
267
A
LYS
268
n
243
LYS
268
A
PHE
269
n
244
PHE
269
A
THR
270
n
245
THR
270
A
ILE
271
n
246
ILE
271
A
LYS
272
n
247
LYS
272
A
GLU
273
n
248
GLU
273
A
LYS
274
n
249
LYS
274
A
GLN
275
n
250
GLN
275
A
LEU
276
n
251
LEU
276
A
TYR
277
n
252
TYR
277
A
ASP
278
n
253
ASP
278
A
LEU
279
n
254
LEU
279
A
LYS
280
n
255
LYS
280
A
ALA
281
n
256
ALA
281
A
ILE
282
n
257
ILE
282
A
PRO
283
n
258
PRO
283
A
THR
284
n
259
THR
284
A
LEU
285
n
260
LEU
285
A
TYR
286
n
261
TYR
286
A
LEU
287
n
262
LEU
287
A
LEU
288
n
263
LEU
288
A
ASN
289
n
264
ASN
289
A
LYS
290
n
265
LYS
290
A
GLU
291
n
266
GLU
291
A
LYS
292
n
267
LYS
292
A
THR
293
n
268
THR
293
A
VAL
294
n
269
VAL
294
A
LEU
295
n
270
LEU
295
A
LEU
296
n
271
LEU
296
A
LYS
297
n
272
LYS
297
A
ASP
298
n
273
ASP
298
A
ALA
299
n
274
ALA
299
A
THR
300
n
275
THR
300
A
THR
301
n
276
THR
301
A
GLN
302
n
277
GLN
302
A
ALA
303
n
278
ALA
303
A
ILE
304
n
279
ILE
304
A
GLU
305
n
280
GLU
305
A
GLU
306
n
281
GLU
306
A
TYR
307
n
282
TYR
307
A
LEU
308
n
283
LEU
308
A
MSE
309
n
284
MSE
309
A
ILE
310
n
285
ILE
310
A
HIS
311
n
286
HIS
311
A
GLN
312
n
287
GLN
312
A
0.6544
0.8034
-0.0797
3.3407
0.2142
1.4620
0.0086
0.0518
0.0848
0.2109
-0.0134
0.0143
-0.1787
0.0788
0.0048
-0.0904
-0.0214
0.0243
-0.1082
0.0038
-0.0120
refined
2.0893
20.3508
27.0581
X-RAY DIFFRACTION
4.1920
-0.0203
-0.3482
3.4636
-0.4743
2.1959
-0.0973
0.5375
-0.1960
-0.4997
0.0652
-0.2906
0.2215
0.0869
0.0321
-0.0856
-0.0319
0.0818
-0.0875
-0.0496
-0.1095
refined
13.9947
-2.9274
8.0481
X-RAY DIFFRACTION
A
36
A
174
X-RAY DIFFRACTION
1
{A|36 - 174}
A
175
A
312
X-RAY DIFFRACTION
2
{A|175 - 312}
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
49
modified residue
A
MSE
24
MET
A
MSE
136
modified residue
A
MSE
111
MET
A
MSE
149
modified residue
A
MSE
124
MET
A
MSE
309
modified residue
A
MSE
284
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
184
A
N
TYR
159
A
O
GLY
192
A
O
GLY
167
A
O
ILE
262
A
O
ILE
237
A
N
VAL
238
A
N
VAL
213
A
O
LEU
239
A
O
LEU
214
A
N
PHE
205
A
N
PHE
180
A
N
LEU
202
A
N
LEU
177
A
O
LEU
288
A
O
LEU
263
A
N
LEU
287
A
N
LEU
262
A
O
LEU
295
A
O
LEU
270
1
A
OG1
THR
36
A
OG1
THR
11
1
Y
1
A
CG2
THR
36
A
CG2
THR
11
1
Y
1
A
CG1
ILE
37
A
CG1
ILE
12
1
Y
1
A
CG2
ILE
37
A
CG2
ILE
12
1
Y
1
A
CD1
ILE
37
A
CD1
ILE
12
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
GLN
27
A
GLN
2
1
Y
1
A
THR
28
A
THR
3
1
Y
1
A
LYS
29
A
LYS
4
1
Y
1
A
ASN
30
A
ASN
5
1
Y
1
A
GLU
31
A
GLU
6
1
Y
1
A
VAL
32
A
VAL
7
1
Y
1
A
SER
33
A
SER
8
1
Y
1
A
GLN
34
A
GLN
9
1
Y
1
A
ASP
35
A
ASP
10
1
Y
1
A
ILE
75
-96.09
-61.64
1
A
HIS
77
-140.87
56.72
149.890
45.8312
21.120
3.5736
0.0000
-2.1054
4.7993
0.0000
-8.3729
0.9583
0.9395
1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. CONDITIONS. 3. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS.
0.2144
0.1770
0.1789
1.9000
28.343
1126
22078
5.1000
95.4300
1.000
0.500
RANDOM
1
THROUGHOUT
0.000
MAD
0.263
1.9000
28.343
197
2460
0
0
2263
1099
SINUSOIDAL
2.000
69
HARMONIC
2.000
325
HARMONIC
5.000
2335
HARMONIC
20.000
316
SEMIHARMONIC
5.000
2688
SEMIHARMONIC
4.000
0.010
2335
HARMONIC
2.000
0.940
3178
HARMONIC
2.000
2.880
2.850
0.2320
0.2203
0.2209
1.9900
126
2676
2802
11
4.5000
95.4300
34.007
0.998
1.90
28.343
4YOD
22102
-3.000
0.040
0.056
1
10.600
72712
1.77
91.700
0.783
0.505
1.910
1.980
2.0
6856
4556
4056
0.702
1
89.000
0.825
0.336
1.980
2.060
3.0
7764
4508
4244
0.467
94.100
0.891
0.238
2.060
2.150
4.5
7435
4315
4091
0.331
94.800
0.934
0.177
2.150
2.260
5.8
7230
4324
4062
0.245
93.900
0.961
0.132
2.260
2.410
7.4
7552
4825
4416
0.182
91.500
0.981
0.091
2.410
2.590
9.3
7453
4288
4053
0.126
94.500
0.991
0.062
2.590
2.850
12.2
7532
4492
4218
0.086
93.900
0.995
0.041
2.850
3.260
16.4
6841
4472
3991
0.057
89.200
0.996
0.030
3.260
4.100
21.9
7026
4472
3942
0.041
88.100
0.998
0.023
4.100
24.8
7023
4550
4029
0.032
88.500
data extraction
PDB_EXTRACT
3.10
phasing
SHELX
phasing
SHARP
data scaling
XSCALE
November 3, 2014 BUILT=20141118
data scaling
XDS
refinement
BUSTER
2.10.2
phasing
SHELXD
Crystal structure of a thioredoxin-like protein (BACCAC_02376) from Bacteroides caccae ATCC 43185 at 1.90 A resolution
1
N
N
2
N
N
A
ALA
51
A
ALA
26
HELX_P
A
TYR
63
A
TYR
38
1
AA1
13
A
HIS
77
A
HIS
52
HELX_P
A
LEU
92
A
LEU
67
1
AA2
16
A
ASN
93
A
ASN
68
HELX_P
A
VAL
95
A
VAL
70
5
AA3
3
A
PRO
96
A
PRO
71
HELX_P
A
THR
111
A
THR
86
1
AA4
16
A
ASP
114
A
ASP
89
HELX_P
A
TYR
130
A
TYR
105
1
AA5
17
A
ASN
138
A
ASN
113
HELX_P
A
ALA
151
A
ALA
126
1
AA6
14
A
GLU
156
A
GLU
131
HELX_P
A
LYS
172
A
LYS
147
1
AA7
17
A
TYR
195
A
TYR
170
HELX_P
A
LEU
197
A
LEU
172
5
AA8
3
A
CYS
211
A
CYS
186
HELX_P
A
GLN
223
A
GLN
198
1
AA9
13
A
ALA
224
A
ALA
199
HELX_P
A
GLU
233
A
GLU
208
1
AB1
10
A
GLU
246
A
GLU
221
HELX_P
A
LEU
254
A
LEU
229
1
AB2
9
A
ASN
255
A
ASN
230
HELX_P
A
PHE
257
A
PHE
232
5
AB3
3
A
PHE
269
A
PHE
244
HELX_P
A
LYS
274
A
LYS
249
1
AB4
6
A
THR
300
A
THR
275
HELX_P
A
GLN
312
A
GLN
287
1
AB5
13
covale
1.345
both
A
ILE
48
A
C
ILE
23
1_555
A
MSE
49
A
N
MSE
24
1_555
covale
1.329
both
A
MSE
49
A
C
MSE
24
1_555
A
VAL
50
A
N
VAL
25
1_555
covale
1.348
both
A
PRO
135
A
C
PRO
110
1_555
A
MSE
136
A
N
MSE
111
1_555
covale
1.340
both
A
MSE
136
A
C
MSE
111
1_555
A
ARG
137
A
N
ARG
112
1_555
covale
1.350
both
A
ALA
148
A
C
ALA
123
1_555
A
MSE
149
A
N
MSE
124
1_555
covale
1.336
both
A
MSE
149
A
C
MSE
124
1_555
A
ALA
150
A
N
ALA
125
1_555
covale
1.348
both
A
LEU
308
A
C
LEU
283
1_555
A
MSE
309
A
N
MSE
284
1_555
covale
1.344
both
A
MSE
309
A
C
MSE
284
1_555
A
ILE
310
A
N
ILE
285
1_555
OXIDOREDUCTASE
Thioredoxin fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, OXIDOREDUCTASE
A
ILE
282
A
ILE
257
1
A
PRO
283
A
PRO
258
9.95
A5ZHK4_9BACE
UNP
1
27
A5ZHK4
QTKNEVSQDTIKTFTLPAIPQIMVAPEQRAEFLVKHYWDNVNFADTNYIHHPEITEQAWVDYCDILNHVPLKTAQEAIRK
TIDRTNVDKKVFAYITDLADKYLYDPNSPMRNEEFYIPVLEAMAASPVLEEIEKVRPKARLELAQKNRIGTKAINFTYTL
ASGAQGSLYQLNADYLLLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKHLNEFPKEWINGYD
KKFTIKEKQLYDLKAIPTLYLLNKEKTVLLKDATTQAIEEYLMIHQ
27
312
4YOD
27
312
A5ZHK4
A
1
2
287
1
expression tag
GLY
0
4YOD
A
A5ZHK4
UNP
1
2
5
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
A
THR
183
A
THR
158
A
THR
185
A
THR
160
A
GLN
191
A
GLN
166
A
SER
193
A
SER
168
A
ILE
262
A
ILE
237
A
TYR
265
A
TYR
240
A
LEU
236
A
LEU
211
A
TYR
242
A
TYR
217
A
TYR
201
A
TYR
176
A
ILE
206
A
ILE
181
A
THR
284
A
THR
259
A
LEU
288
A
LEU
263
A
VAL
294
A
VAL
269
A
LYS
297
A
LYS
272
4
P 1 21 1