0.021640 0.000000 0.002818 0.000000 0.022017 0.000000 0.000000 0.000000 0.014270 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.000 97.420 90.000 46.210 45.420 70.670 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a thioredoxin-like protein (BACCAC_02376) from Bacteroides caccae ATCC 43185 at 1.90 A resolution 10.2210/pdb4yod/pdb pdb_00004yod 100 1 Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator PIXEL 2015-01-15 DECTRIS PILATUS 6M double crystal Si(111) MAD M x-ray 1 0.9184 1.0 0.9796 1.0 0.9795 1.0 BL12-2 SSRL 0.9184,0.9796,0.9795 SYNCHROTRON SSRL BEAMLINE BL12-2 33449.629 thioredoxin-like protein 1 man polymer 18.015 water 197 nat water no yes GQTKNEVSQDTIKTFTLPAIPQI(MSE)VAPEQRAEFLVKHYWDNVNFADTNYIHHPEITEQAWVDYCDILNHVPLKTAQ EAIRKTIDRTNVDKKVFAYITDLADKYLYDPNSP(MSE)RNEEFYIPVLEA(MSE)AASPVLEEIEKVRPKARLELAQKN RIGTKAINFTYTLASGAQGSLYQLNADYLLLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKH LNEFPKEWINGYDKKFTIKEKQLYDLKAIPTLYLLNKEKTVLLKDATTQAIEEYL(MSE)IHQ GQTKNEVSQDTIKTFTLPAIPQIMVAPEQRAEFLVKHYWDNVNFADTNYIHHPEITEQAWVDYCDILNHVPLKTAQEAIR KTIDRTNVDKKVFAYITDLADKYLYDPNSPMRNEEFYIPVLEAMAASPVLEEIEKVRPKARLELAQKNRIGTKAINFTYT LASGAQGSLYQLNADYLLLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKHLNEFPKEWINGY DKKFTIKEKQLYDLKAIPTLYLLNKEKTVLLKDATTQAIEEYLMIHQ A JCSG-419026 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 287 BACCAC_02376 411901 Bacteroides caccae ATCC 43185 562 Escherichia Coli PB1 Plasmid Biological sequence SpeedET 1 2.20 44.06 VAPOR DIFFUSION, SITTING DROP 9.0 30% polyethylene glycol 6000, 0.1M Bicine pH 9.0 277 Joint Center for Structural Genomics JCSG PSI:Biology entity_src_gen pdbx_struct_oper_list software citation_author database_2 struct_ref_seq_dif repository Initial release Derived calculations Refinement description Source and taxonomy Database references Database references 1 0 2015-03-25 1 1 2017-11-22 1 2 2018-01-24 1 3 2023-02-01 _entity_src_gen.pdbx_alt_source_flag _pdbx_struct_oper_list.symmetry_operation _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Y RCSB Y RCSB 2015-03-11 REL REL HOH water THE CONSTRUCT (27-312) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. HOH 449 2 HOH HOH 401 A HOH 370 2 HOH HOH 402 A HOH 397 2 HOH HOH 403 A HOH 342 2 HOH HOH 404 A HOH 395 2 HOH HOH 405 A HOH 364 2 HOH HOH 406 A HOH 372 2 HOH HOH 407 A HOH 407 2 HOH HOH 408 A HOH 494 2 HOH HOH 409 A HOH 349 2 HOH HOH 410 A HOH 441 2 HOH HOH 411 A HOH 451 2 HOH HOH 412 A HOH 416 2 HOH HOH 413 A HOH 482 2 HOH HOH 414 A HOH 443 2 HOH HOH 415 A HOH 411 2 HOH HOH 416 A HOH 321 2 HOH HOH 417 A HOH 381 2 HOH HOH 418 A HOH 427 2 HOH HOH 419 A HOH 369 2 HOH HOH 420 A HOH 388 2 HOH HOH 421 A HOH 502 2 HOH HOH 422 A HOH 361 2 HOH HOH 423 A HOH 420 2 HOH HOH 424 A HOH 379 2 HOH HOH 425 A HOH 377 2 HOH HOH 426 A HOH 496 2 HOH HOH 427 A HOH 373 2 HOH HOH 428 A HOH 363 2 HOH HOH 429 A HOH 469 2 HOH HOH 430 A HOH 445 2 HOH HOH 431 A HOH 414 2 HOH HOH 432 A HOH 368 2 HOH HOH 433 A HOH 425 2 HOH HOH 434 A HOH 346 2 HOH HOH 435 A HOH 491 2 HOH HOH 436 A HOH 495 2 HOH HOH 437 A HOH 375 2 HOH HOH 438 A HOH 513 2 HOH HOH 439 A HOH 339 2 HOH HOH 440 A HOH 389 2 HOH HOH 441 A HOH 374 2 HOH HOH 442 A HOH 367 2 HOH HOH 443 A HOH 473 2 HOH HOH 444 A HOH 333 2 HOH HOH 445 A HOH 466 2 HOH HOH 446 A HOH 341 2 HOH HOH 447 A HOH 408 2 HOH HOH 448 A HOH 512 2 HOH HOH 449 A HOH 498 2 HOH HOH 450 A HOH 484 2 HOH HOH 451 A HOH 437 2 HOH HOH 452 A HOH 350 2 HOH HOH 453 A HOH 454 2 HOH HOH 454 A HOH 452 2 HOH HOH 455 A HOH 358 2 HOH HOH 456 A HOH 470 2 HOH HOH 457 A HOH 448 2 HOH HOH 458 A HOH 447 2 HOH HOH 459 A HOH 406 2 HOH HOH 460 A HOH 515 2 HOH HOH 461 A HOH 485 2 HOH HOH 462 A HOH 504 2 HOH HOH 463 A HOH 461 2 HOH HOH 464 A HOH 458 2 HOH HOH 465 A HOH 506 2 HOH HOH 466 A HOH 428 2 HOH HOH 467 A HOH 516 2 HOH HOH 468 A HOH 456 2 HOH HOH 469 A HOH 337 2 HOH HOH 470 A HOH 340 2 HOH HOH 471 A HOH 479 2 HOH HOH 472 A HOH 488 2 HOH HOH 473 A HOH 334 2 HOH HOH 474 A HOH 465 2 HOH HOH 475 A HOH 320 2 HOH HOH 476 A HOH 322 2 HOH HOH 477 A HOH 323 2 HOH HOH 478 A HOH 324 2 HOH HOH 479 A HOH 325 2 HOH HOH 480 A HOH 326 2 HOH HOH 481 A HOH 327 2 HOH HOH 482 A HOH 328 2 HOH HOH 483 A HOH 329 2 HOH HOH 484 A HOH 330 2 HOH HOH 485 A HOH 331 2 HOH HOH 486 A HOH 332 2 HOH HOH 487 A HOH 335 2 HOH HOH 488 A HOH 336 2 HOH HOH 489 A HOH 338 2 HOH HOH 490 A HOH 343 2 HOH HOH 491 A HOH 344 2 HOH HOH 492 A HOH 345 2 HOH HOH 493 A HOH 347 2 HOH HOH 494 A HOH 348 2 HOH HOH 495 A HOH 351 2 HOH HOH 496 A HOH 352 2 HOH HOH 497 A HOH 353 2 HOH HOH 498 A HOH 354 2 HOH HOH 499 A HOH 355 2 HOH HOH 500 A HOH 356 2 HOH HOH 501 A HOH 357 2 HOH HOH 502 A HOH 359 2 HOH HOH 503 A HOH 360 2 HOH HOH 504 A HOH 362 2 HOH HOH 505 A HOH 365 2 HOH HOH 506 A HOH 366 2 HOH HOH 507 A HOH 371 2 HOH HOH 508 A HOH 376 2 HOH HOH 509 A HOH 378 2 HOH HOH 510 A HOH 380 2 HOH HOH 511 A HOH 382 2 HOH HOH 512 A HOH 383 2 HOH HOH 513 A HOH 384 2 HOH HOH 514 A HOH 385 2 HOH HOH 515 A HOH 386 2 HOH HOH 516 A HOH 387 2 HOH HOH 517 A HOH 390 2 HOH HOH 518 A HOH 391 2 HOH HOH 519 A HOH 392 2 HOH HOH 520 A HOH 393 2 HOH HOH 521 A HOH 394 2 HOH HOH 522 A HOH 396 2 HOH HOH 523 A HOH 398 2 HOH HOH 524 A HOH 399 2 HOH HOH 525 A HOH 400 2 HOH HOH 526 A HOH 401 2 HOH HOH 527 A HOH 402 2 HOH HOH 528 A HOH 403 2 HOH HOH 529 A HOH 404 2 HOH HOH 530 A HOH 405 2 HOH HOH 531 A HOH 409 2 HOH HOH 532 A HOH 410 2 HOH HOH 533 A HOH 412 2 HOH HOH 534 A HOH 413 2 HOH HOH 535 A HOH 415 2 HOH HOH 536 A HOH 417 2 HOH HOH 537 A HOH 418 2 HOH HOH 538 A HOH 419 2 HOH HOH 539 A HOH 421 2 HOH HOH 540 A HOH 422 2 HOH HOH 541 A HOH 423 2 HOH HOH 542 A HOH 424 2 HOH HOH 543 A HOH 426 2 HOH HOH 544 A HOH 429 2 HOH HOH 545 A HOH 430 2 HOH HOH 546 A HOH 431 2 HOH HOH 547 A HOH 432 2 HOH HOH 548 A HOH 433 2 HOH HOH 549 A HOH 434 2 HOH HOH 550 A HOH 435 2 HOH HOH 551 A HOH 436 2 HOH HOH 552 A HOH 438 2 HOH HOH 553 A HOH 439 2 HOH HOH 554 A HOH 440 2 HOH HOH 555 A HOH 442 2 HOH HOH 556 A HOH 444 2 HOH HOH 557 A HOH 446 2 HOH HOH 558 A HOH 450 2 HOH HOH 559 A HOH 453 2 HOH HOH 560 A HOH 455 2 HOH HOH 561 A HOH 457 2 HOH HOH 562 A HOH 459 2 HOH HOH 563 A HOH 460 2 HOH HOH 564 A HOH 462 2 HOH HOH 565 A HOH 463 2 HOH HOH 566 A HOH 464 2 HOH HOH 567 A HOH 467 2 HOH HOH 568 A HOH 468 2 HOH HOH 569 A HOH 471 2 HOH HOH 570 A HOH 472 2 HOH HOH 571 A HOH 474 2 HOH HOH 572 A HOH 475 2 HOH HOH 573 A HOH 476 2 HOH HOH 574 A HOH 477 2 HOH HOH 575 A HOH 478 2 HOH HOH 576 A HOH 480 2 HOH HOH 577 A HOH 481 2 HOH HOH 578 A HOH 483 2 HOH HOH 579 A HOH 486 2 HOH HOH 580 A HOH 487 2 HOH HOH 581 A HOH 489 2 HOH HOH 582 A HOH 490 2 HOH HOH 583 A HOH 492 2 HOH HOH 584 A HOH 493 2 HOH HOH 585 A HOH 497 2 HOH HOH 586 A HOH 499 2 HOH HOH 587 A HOH 500 2 HOH HOH 588 A HOH 501 2 HOH HOH 589 A HOH 503 2 HOH HOH 590 A HOH 505 2 HOH HOH 591 A HOH 507 2 HOH HOH 592 A HOH 508 2 HOH HOH 593 A HOH 509 2 HOH HOH 594 A HOH 510 2 HOH HOH 595 A HOH 511 2 HOH HOH 596 A HOH 514 2 HOH HOH 597 A n 1 0 A n 2 27 A n 3 28 A n 4 29 A n 5 30 A n 6 31 A n 7 32 A n 8 33 A n 9 34 A n 10 35 A THR 36 n 11 THR 36 A ILE 37 n 12 ILE 37 A LYS 38 n 13 LYS 38 A THR 39 n 14 THR 39 A PHE 40 n 15 PHE 40 A THR 41 n 16 THR 41 A LEU 42 n 17 LEU 42 A PRO 43 n 18 PRO 43 A ALA 44 n 19 ALA 44 A ILE 45 n 20 ILE 45 A PRO 46 n 21 PRO 46 A GLN 47 n 22 GLN 47 A ILE 48 n 23 ILE 48 A MSE 49 n 24 MSE 49 A VAL 50 n 25 VAL 50 A ALA 51 n 26 ALA 51 A PRO 52 n 27 PRO 52 A GLU 53 n 28 GLU 53 A GLN 54 n 29 GLN 54 A ARG 55 n 30 ARG 55 A ALA 56 n 31 ALA 56 A GLU 57 n 32 GLU 57 A PHE 58 n 33 PHE 58 A LEU 59 n 34 LEU 59 A VAL 60 n 35 VAL 60 A LYS 61 n 36 LYS 61 A HIS 62 n 37 HIS 62 A TYR 63 n 38 TYR 63 A TRP 64 n 39 TRP 64 A ASP 65 n 40 ASP 65 A ASN 66 n 41 ASN 66 A VAL 67 n 42 VAL 67 A ASN 68 n 43 ASN 68 A PHE 69 n 44 PHE 69 A ALA 70 n 45 ALA 70 A ASP 71 n 46 ASP 71 A THR 72 n 47 THR 72 A ASN 73 n 48 ASN 73 A TYR 74 n 49 TYR 74 A ILE 75 n 50 ILE 75 A HIS 76 n 51 HIS 76 A HIS 77 n 52 HIS 77 A PRO 78 n 53 PRO 78 A GLU 79 n 54 GLU 79 A ILE 80 n 55 ILE 80 A THR 81 n 56 THR 81 A GLU 82 n 57 GLU 82 A GLN 83 n 58 GLN 83 A ALA 84 n 59 ALA 84 A TRP 85 n 60 TRP 85 A VAL 86 n 61 VAL 86 A ASP 87 n 62 ASP 87 A TYR 88 n 63 TYR 88 A CYS 89 n 64 CYS 89 A ASP 90 n 65 ASP 90 A ILE 91 n 66 ILE 91 A LEU 92 n 67 LEU 92 A ASN 93 n 68 ASN 93 A HIS 94 n 69 HIS 94 A VAL 95 n 70 VAL 95 A PRO 96 n 71 PRO 96 A LEU 97 n 72 LEU 97 A LYS 98 n 73 LYS 98 A THR 99 n 74 THR 99 A ALA 100 n 75 ALA 100 A GLN 101 n 76 GLN 101 A GLU 102 n 77 GLU 102 A ALA 103 n 78 ALA 103 A ILE 104 n 79 ILE 104 A ARG 105 n 80 ARG 105 A LYS 106 n 81 LYS 106 A THR 107 n 82 THR 107 A ILE 108 n 83 ILE 108 A ASP 109 n 84 ASP 109 A ARG 110 n 85 ARG 110 A THR 111 n 86 THR 111 A ASN 112 n 87 ASN 112 A VAL 113 n 88 VAL 113 A ASP 114 n 89 ASP 114 A LYS 115 n 90 LYS 115 A LYS 116 n 91 LYS 116 A VAL 117 n 92 VAL 117 A PHE 118 n 93 PHE 118 A ALA 119 n 94 ALA 119 A TYR 120 n 95 TYR 120 A ILE 121 n 96 ILE 121 A THR 122 n 97 THR 122 A ASP 123 n 98 ASP 123 A LEU 124 n 99 LEU 124 A ALA 125 n 100 ALA 125 A ASP 126 n 101 ASP 126 A LYS 127 n 102 LYS 127 A TYR 128 n 103 TYR 128 A LEU 129 n 104 LEU 129 A TYR 130 n 105 TYR 130 A ASP 131 n 106 ASP 131 A PRO 132 n 107 PRO 132 A ASN 133 n 108 ASN 133 A SER 134 n 109 SER 134 A PRO 135 n 110 PRO 135 A MSE 136 n 111 MSE 136 A ARG 137 n 112 ARG 137 A ASN 138 n 113 ASN 138 A GLU 139 n 114 GLU 139 A GLU 140 n 115 GLU 140 A PHE 141 n 116 PHE 141 A TYR 142 n 117 TYR 142 A ILE 143 n 118 ILE 143 A PRO 144 n 119 PRO 144 A VAL 145 n 120 VAL 145 A LEU 146 n 121 LEU 146 A GLU 147 n 122 GLU 147 A ALA 148 n 123 ALA 148 A MSE 149 n 124 MSE 149 A ALA 150 n 125 ALA 150 A ALA 151 n 126 ALA 151 A SER 152 n 127 SER 152 A PRO 153 n 128 PRO 153 A VAL 154 n 129 VAL 154 A LEU 155 n 130 LEU 155 A GLU 156 n 131 GLU 156 A GLU 157 n 132 GLU 157 A ILE 158 n 133 ILE 158 A GLU 159 n 134 GLU 159 A LYS 160 n 135 LYS 160 A VAL 161 n 136 VAL 161 A ARG 162 n 137 ARG 162 A PRO 163 n 138 PRO 163 A LYS 164 n 139 LYS 164 A ALA 165 n 140 ALA 165 A ARG 166 n 141 ARG 166 A LEU 167 n 142 LEU 167 A GLU 168 n 143 GLU 168 A LEU 169 n 144 LEU 169 A ALA 170 n 145 ALA 170 A GLN 171 n 146 GLN 171 A LYS 172 n 147 LYS 172 A ASN 173 n 148 ASN 173 A ARG 174 n 149 ARG 174 A ILE 175 n 150 ILE 175 A GLY 176 n 151 GLY 176 A THR 177 n 152 THR 177 A LYS 178 n 153 LYS 178 A ALA 179 n 154 ALA 179 A ILE 180 n 155 ILE 180 A ASN 181 n 156 ASN 181 A PHE 182 n 157 PHE 182 A THR 183 n 158 THR 183 A TYR 184 n 159 TYR 184 A THR 185 n 160 THR 185 A LEU 186 n 161 LEU 186 A ALA 187 n 162 ALA 187 A SER 188 n 163 SER 188 A GLY 189 n 164 GLY 189 A ALA 190 n 165 ALA 190 A GLN 191 n 166 GLN 191 A GLY 192 n 167 GLY 192 A SER 193 n 168 SER 193 A LEU 194 n 169 LEU 194 A TYR 195 n 170 TYR 195 A GLN 196 n 171 GLN 196 A LEU 197 n 172 LEU 197 A ASN 198 n 173 ASN 198 A ALA 199 n 174 ALA 199 A ASP 200 n 175 ASP 200 A TYR 201 n 176 TYR 201 A LEU 202 n 177 LEU 202 A LEU 203 n 178 LEU 203 A LEU 204 n 179 LEU 204 A PHE 205 n 180 PHE 205 A ILE 206 n 181 ILE 206 A ASN 207 n 182 ASN 207 A ASN 208 n 183 ASN 208 A PRO 209 n 184 PRO 209 A GLY 210 n 185 GLY 210 A CYS 211 n 186 CYS 211 A HIS 212 n 187 HIS 212 A ALA 213 n 188 ALA 213 A CYS 214 n 189 CYS 214 A THR 215 n 190 THR 215 A GLU 216 n 191 GLU 216 A THR 217 n 192 THR 217 A ILE 218 n 193 ILE 218 A GLU 219 n 194 GLU 219 A GLY 220 n 195 GLY 220 A LEU 221 n 196 LEU 221 A LYS 222 n 197 LYS 222 A GLN 223 n 198 GLN 223 A ALA 224 n 199 ALA 224 A PRO 225 n 200 PRO 225 A ILE 226 n 201 ILE 226 A ILE 227 n 202 ILE 227 A SER 228 n 203 SER 228 A GLN 229 n 204 GLN 229 A LEU 230 n 205 LEU 230 A ILE 231 n 206 ILE 231 A LYS 232 n 207 LYS 232 A GLU 233 n 208 GLU 233 A LYS 234 n 209 LYS 234 A LYS 235 n 210 LYS 235 A LEU 236 n 211 LEU 236 A ILE 237 n 212 ILE 237 A VAL 238 n 213 VAL 238 A LEU 239 n 214 LEU 239 A SER 240 n 215 SER 240 A ILE 241 n 216 ILE 241 A TYR 242 n 217 TYR 242 A PRO 243 n 218 PRO 243 A ASP 244 n 219 ASP 244 A GLU 245 n 220 GLU 245 A GLU 246 n 221 GLU 246 A LEU 247 n 222 LEU 247 A ASP 248 n 223 ASP 248 A ASP 249 n 224 ASP 249 A TRP 250 n 225 TRP 250 A ARG 251 n 226 ARG 251 A LYS 252 n 227 LYS 252 A HIS 253 n 228 HIS 253 A LEU 254 n 229 LEU 254 A ASN 255 n 230 ASN 255 A GLU 256 n 231 GLU 256 A PHE 257 n 232 PHE 257 A PRO 258 n 233 PRO 258 A LYS 259 n 234 LYS 259 A GLU 260 n 235 GLU 260 A TRP 261 n 236 TRP 261 A ILE 262 n 237 ILE 262 A ASN 263 n 238 ASN 263 A GLY 264 n 239 GLY 264 A TYR 265 n 240 TYR 265 A ASP 266 n 241 ASP 266 A LYS 267 n 242 LYS 267 A LYS 268 n 243 LYS 268 A PHE 269 n 244 PHE 269 A THR 270 n 245 THR 270 A ILE 271 n 246 ILE 271 A LYS 272 n 247 LYS 272 A GLU 273 n 248 GLU 273 A LYS 274 n 249 LYS 274 A GLN 275 n 250 GLN 275 A LEU 276 n 251 LEU 276 A TYR 277 n 252 TYR 277 A ASP 278 n 253 ASP 278 A LEU 279 n 254 LEU 279 A LYS 280 n 255 LYS 280 A ALA 281 n 256 ALA 281 A ILE 282 n 257 ILE 282 A PRO 283 n 258 PRO 283 A THR 284 n 259 THR 284 A LEU 285 n 260 LEU 285 A TYR 286 n 261 TYR 286 A LEU 287 n 262 LEU 287 A LEU 288 n 263 LEU 288 A ASN 289 n 264 ASN 289 A LYS 290 n 265 LYS 290 A GLU 291 n 266 GLU 291 A LYS 292 n 267 LYS 292 A THR 293 n 268 THR 293 A VAL 294 n 269 VAL 294 A LEU 295 n 270 LEU 295 A LEU 296 n 271 LEU 296 A LYS 297 n 272 LYS 297 A ASP 298 n 273 ASP 298 A ALA 299 n 274 ALA 299 A THR 300 n 275 THR 300 A THR 301 n 276 THR 301 A GLN 302 n 277 GLN 302 A ALA 303 n 278 ALA 303 A ILE 304 n 279 ILE 304 A GLU 305 n 280 GLU 305 A GLU 306 n 281 GLU 306 A TYR 307 n 282 TYR 307 A LEU 308 n 283 LEU 308 A MSE 309 n 284 MSE 309 A ILE 310 n 285 ILE 310 A HIS 311 n 286 HIS 311 A GLN 312 n 287 GLN 312 A 0.6544 0.8034 -0.0797 3.3407 0.2142 1.4620 0.0086 0.0518 0.0848 0.2109 -0.0134 0.0143 -0.1787 0.0788 0.0048 -0.0904 -0.0214 0.0243 -0.1082 0.0038 -0.0120 refined 2.0893 20.3508 27.0581 X-RAY DIFFRACTION 4.1920 -0.0203 -0.3482 3.4636 -0.4743 2.1959 -0.0973 0.5375 -0.1960 -0.4997 0.0652 -0.2906 0.2215 0.0869 0.0321 -0.0856 -0.0319 0.0818 -0.0875 -0.0496 -0.1095 refined 13.9947 -2.9274 8.0481 X-RAY DIFFRACTION A 36 A 174 X-RAY DIFFRACTION 1 {A|36 - 174} A 175 A 312 X-RAY DIFFRACTION 2 {A|175 - 312} author_and_software_defined_assembly PISA 1 monomeric A MSE 49 modified residue A MSE 24 MET A MSE 136 modified residue A MSE 111 MET A MSE 149 modified residue A MSE 124 MET A MSE 309 modified residue A MSE 284 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 184 A N TYR 159 A O GLY 192 A O GLY 167 A O ILE 262 A O ILE 237 A N VAL 238 A N VAL 213 A O LEU 239 A O LEU 214 A N PHE 205 A N PHE 180 A N LEU 202 A N LEU 177 A O LEU 288 A O LEU 263 A N LEU 287 A N LEU 262 A O LEU 295 A O LEU 270 1 A OG1 THR 36 A OG1 THR 11 1 Y 1 A CG2 THR 36 A CG2 THR 11 1 Y 1 A CG1 ILE 37 A CG1 ILE 12 1 Y 1 A CG2 ILE 37 A CG2 ILE 12 1 Y 1 A CD1 ILE 37 A CD1 ILE 12 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A GLN 27 A GLN 2 1 Y 1 A THR 28 A THR 3 1 Y 1 A LYS 29 A LYS 4 1 Y 1 A ASN 30 A ASN 5 1 Y 1 A GLU 31 A GLU 6 1 Y 1 A VAL 32 A VAL 7 1 Y 1 A SER 33 A SER 8 1 Y 1 A GLN 34 A GLN 9 1 Y 1 A ASP 35 A ASP 10 1 Y 1 A ILE 75 -96.09 -61.64 1 A HIS 77 -140.87 56.72 149.890 45.8312 21.120 3.5736 0.0000 -2.1054 4.7993 0.0000 -8.3729 0.9583 0.9395 1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. CONDITIONS. 3. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 0.2144 0.1770 0.1789 1.9000 28.343 1126 22078 5.1000 95.4300 1.000 0.500 RANDOM 1 THROUGHOUT 0.000 MAD 0.263 1.9000 28.343 197 2460 0 0 2263 1099 SINUSOIDAL 2.000 69 HARMONIC 2.000 325 HARMONIC 5.000 2335 HARMONIC 20.000 316 SEMIHARMONIC 5.000 2688 SEMIHARMONIC 4.000 0.010 2335 HARMONIC 2.000 0.940 3178 HARMONIC 2.000 2.880 2.850 0.2320 0.2203 0.2209 1.9900 126 2676 2802 11 4.5000 95.4300 34.007 0.998 1.90 28.343 4YOD 22102 -3.000 0.040 0.056 1 10.600 72712 1.77 91.700 0.783 0.505 1.910 1.980 2.0 6856 4556 4056 0.702 1 89.000 0.825 0.336 1.980 2.060 3.0 7764 4508 4244 0.467 94.100 0.891 0.238 2.060 2.150 4.5 7435 4315 4091 0.331 94.800 0.934 0.177 2.150 2.260 5.8 7230 4324 4062 0.245 93.900 0.961 0.132 2.260 2.410 7.4 7552 4825 4416 0.182 91.500 0.981 0.091 2.410 2.590 9.3 7453 4288 4053 0.126 94.500 0.991 0.062 2.590 2.850 12.2 7532 4492 4218 0.086 93.900 0.995 0.041 2.850 3.260 16.4 6841 4472 3991 0.057 89.200 0.996 0.030 3.260 4.100 21.9 7026 4472 3942 0.041 88.100 0.998 0.023 4.100 24.8 7023 4550 4029 0.032 88.500 data extraction PDB_EXTRACT 3.10 phasing SHELX phasing SHARP data scaling XSCALE November 3, 2014 BUILT=20141118 data scaling XDS refinement BUSTER 2.10.2 phasing SHELXD Crystal structure of a thioredoxin-like protein (BACCAC_02376) from Bacteroides caccae ATCC 43185 at 1.90 A resolution 1 N N 2 N N A ALA 51 A ALA 26 HELX_P A TYR 63 A TYR 38 1 AA1 13 A HIS 77 A HIS 52 HELX_P A LEU 92 A LEU 67 1 AA2 16 A ASN 93 A ASN 68 HELX_P A VAL 95 A VAL 70 5 AA3 3 A PRO 96 A PRO 71 HELX_P A THR 111 A THR 86 1 AA4 16 A ASP 114 A ASP 89 HELX_P A TYR 130 A TYR 105 1 AA5 17 A ASN 138 A ASN 113 HELX_P A ALA 151 A ALA 126 1 AA6 14 A GLU 156 A GLU 131 HELX_P A LYS 172 A LYS 147 1 AA7 17 A TYR 195 A TYR 170 HELX_P A LEU 197 A LEU 172 5 AA8 3 A CYS 211 A CYS 186 HELX_P A GLN 223 A GLN 198 1 AA9 13 A ALA 224 A ALA 199 HELX_P A GLU 233 A GLU 208 1 AB1 10 A GLU 246 A GLU 221 HELX_P A LEU 254 A LEU 229 1 AB2 9 A ASN 255 A ASN 230 HELX_P A PHE 257 A PHE 232 5 AB3 3 A PHE 269 A PHE 244 HELX_P A LYS 274 A LYS 249 1 AB4 6 A THR 300 A THR 275 HELX_P A GLN 312 A GLN 287 1 AB5 13 covale 1.345 both A ILE 48 A C ILE 23 1_555 A MSE 49 A N MSE 24 1_555 covale 1.329 both A MSE 49 A C MSE 24 1_555 A VAL 50 A N VAL 25 1_555 covale 1.348 both A PRO 135 A C PRO 110 1_555 A MSE 136 A N MSE 111 1_555 covale 1.340 both A MSE 136 A C MSE 111 1_555 A ARG 137 A N ARG 112 1_555 covale 1.350 both A ALA 148 A C ALA 123 1_555 A MSE 149 A N MSE 124 1_555 covale 1.336 both A MSE 149 A C MSE 124 1_555 A ALA 150 A N ALA 125 1_555 covale 1.348 both A LEU 308 A C LEU 283 1_555 A MSE 309 A N MSE 284 1_555 covale 1.344 both A MSE 309 A C MSE 284 1_555 A ILE 310 A N ILE 285 1_555 OXIDOREDUCTASE Thioredoxin fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, OXIDOREDUCTASE A ILE 282 A ILE 257 1 A PRO 283 A PRO 258 9.95 A5ZHK4_9BACE UNP 1 27 A5ZHK4 QTKNEVSQDTIKTFTLPAIPQIMVAPEQRAEFLVKHYWDNVNFADTNYIHHPEITEQAWVDYCDILNHVPLKTAQEAIRK TIDRTNVDKKVFAYITDLADKYLYDPNSPMRNEEFYIPVLEAMAASPVLEEIEKVRPKARLELAQKNRIGTKAINFTYTL ASGAQGSLYQLNADYLLLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKHLNEFPKEWINGYD KKFTIKEKQLYDLKAIPTLYLLNKEKTVLLKDATTQAIEEYLMIHQ 27 312 4YOD 27 312 A5ZHK4 A 1 2 287 1 expression tag GLY 0 4YOD A A5ZHK4 UNP 1 2 5 anti-parallel parallel parallel anti-parallel anti-parallel A THR 183 A THR 158 A THR 185 A THR 160 A GLN 191 A GLN 166 A SER 193 A SER 168 A ILE 262 A ILE 237 A TYR 265 A TYR 240 A LEU 236 A LEU 211 A TYR 242 A TYR 217 A TYR 201 A TYR 176 A ILE 206 A ILE 181 A THR 284 A THR 259 A LEU 288 A LEU 263 A VAL 294 A VAL 269 A LYS 297 A LYS 272 4 P 1 21 1