0.006428
0.000000
0.000000
0.000000
0.006428
0.000000
0.000000
0.000000
0.006428
0.000000
0.000000
0.000000
Chen, Y.
Savinov, S.N.
Mielech, A.M.
Cao, T.
Baker, S.C.
Mesecar, A.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.000
90.000
90.000
155.576
155.576
155.576
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H7 N O5 S
169.156
n
CYSTEINESULFONIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
R
C
N
266
N
C
N
267
N
S
N
268
N
C
N
269
N
O
N
270
N
O
N
271
N
O
N
272
N
O
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
R
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
N
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
C
N
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
doub
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
Y
277
N
doub
Y
278
N
sing
Y
279
N
sing
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
doub
N
284
N
sing
Y
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
US
J.Biol.Chem.
JBCHA3
0071
1083-351X
290
25293
25306
10.1074/jbc.M115.662130
26296883
X-ray Structural and Functional Studies of the Three Tandemly Linked Domains of Non-structural Protein 3 (nsp3) from Murine Hepatitis Virus Reveal Conserved Functions.
2015
10.2210/pdb4ypt/pdb
pdb_00004ypt
100
1
CCD
2013-06-19
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.03
1.0
23-BM-B
APS
1.03
SYNCHROTRON
APS BEAMLINE 23-BM-B
43388.770
Replicase polyprotein 1ab
3.4.19.12,3.4.22.69,3.4.22.-,2.7.7.48,3.6.4.12,3.6.4.13,2.1.1.-,3.1.13.-,3.1.-.-
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
92.094
GLYCEROL
5
syn
non-polymer
18.015
water
77
nat
water
pp1ab,ORF1ab polyprotein
no
yes
EVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIR
ALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGFDEP
QLLKYYTMLGMCKWPVVVCGNYFAFKQSNNN(OCS)YINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKG
SFKFNEPSDSIDFMRVVLREADLSGATCNLEFVCKCGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLVHCTQF
NVPFLICSNTPEGRKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKNLK
EVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIR
ALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGFDEP
QLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKF
NEPSDSIDFMRVVLREADLSGATCNLEFVCKCGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLVHCTQFNVPF
LICSNTPEGRKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKNLK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MHV-A59
A59
sample
1
387
rep, 1a-1b
11142
Murine coronavirus (strain A59)
562
Escherichia coli
Biological sequence
1
3.71
66.87
VAPOR DIFFUSION, SITTING DROP
100mM HEPES, 4% PEG400, 2M (NH4)2SO4 and 5mM DTT
6.8 - 8.3
293
citation
pdbx_audit_support
pdbx_struct_oper_list
software
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Other
Structure summary
Database references
Database references
Author supporting evidence
Database references
Derived calculations
Refinement description
Author supporting evidence
Data collection
Database references
1
0
2015-08-26
1
1
2015-09-02
1
2
2015-09-09
1
3
2015-10-28
1
4
2017-09-06
1
5
2019-12-11
1
6
2023-12-27
_citation.journal_id_CSD
_pdbx_audit_support.funding_organization
_pdbx_struct_oper_list.symmetry_operation
_software.name
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
R01 AI085089
N
RCSB
Y
RCSB
2015-03-13
REL
REL
ZN
ZINC ION
GOL
GLYCEROL
HOH
water
ZN
1
2
ZN
ZN
2001
A
GOL
1
3
GOL
GOL
2002
A
GOL
2
3
GOL
GOL
2003
A
GOL
3
3
GOL
GOL
2004
A
GOL
4
3
GOL
GOL
2005
A
GOL
5
3
GOL
GOL
2006
A
HOH
61
4
HOH
HOH
2101
A
HOH
72
4
HOH
HOH
2102
A
HOH
34
4
HOH
HOH
2103
A
HOH
7
4
HOH
HOH
2104
A
HOH
30
4
HOH
HOH
2105
A
HOH
17
4
HOH
HOH
2106
A
HOH
42
4
HOH
HOH
2107
A
HOH
25
4
HOH
HOH
2108
A
HOH
40
4
HOH
HOH
2109
A
HOH
6
4
HOH
HOH
2110
A
HOH
20
4
HOH
HOH
2111
A
HOH
67
4
HOH
HOH
2112
A
HOH
8
4
HOH
HOH
2113
A
HOH
14
4
HOH
HOH
2114
A
HOH
9
4
HOH
HOH
2115
A
HOH
87
4
HOH
HOH
2116
A
HOH
38
4
HOH
HOH
2117
A
HOH
53
4
HOH
HOH
2118
A
HOH
23
4
HOH
HOH
2119
A
HOH
1
4
HOH
HOH
2120
A
HOH
27
4
HOH
HOH
2121
A
HOH
22
4
HOH
HOH
2122
A
HOH
11
4
HOH
HOH
2123
A
HOH
13
4
HOH
HOH
2124
A
HOH
64
4
HOH
HOH
2125
A
HOH
2
4
HOH
HOH
2126
A
HOH
74
4
HOH
HOH
2127
A
HOH
16
4
HOH
HOH
2128
A
HOH
84
4
HOH
HOH
2129
A
HOH
73
4
HOH
HOH
2130
A
HOH
21
4
HOH
HOH
2131
A
HOH
68
4
HOH
HOH
2132
A
HOH
4
4
HOH
HOH
2133
A
HOH
28
4
HOH
HOH
2134
A
HOH
83
4
HOH
HOH
2135
A
HOH
39
4
HOH
HOH
2136
A
HOH
99
4
HOH
HOH
2137
A
HOH
5
4
HOH
HOH
2138
A
HOH
36
4
HOH
HOH
2139
A
HOH
62
4
HOH
HOH
2140
A
HOH
60
4
HOH
HOH
2141
A
HOH
31
4
HOH
HOH
2142
A
HOH
79
4
HOH
HOH
2143
A
HOH
94
4
HOH
HOH
2144
A
HOH
54
4
HOH
HOH
2145
A
HOH
55
4
HOH
HOH
2146
A
HOH
19
4
HOH
HOH
2147
A
HOH
24
4
HOH
HOH
2148
A
HOH
47
4
HOH
HOH
2149
A
HOH
58
4
HOH
HOH
2150
A
HOH
102
4
HOH
HOH
2151
A
HOH
32
4
HOH
HOH
2152
A
HOH
71
4
HOH
HOH
2153
A
HOH
33
4
HOH
HOH
2154
A
HOH
91
4
HOH
HOH
2155
A
HOH
100
4
HOH
HOH
2156
A
HOH
92
4
HOH
HOH
2157
A
HOH
85
4
HOH
HOH
2158
A
HOH
98
4
HOH
HOH
2159
A
HOH
57
4
HOH
HOH
2160
A
HOH
88
4
HOH
HOH
2161
A
HOH
103
4
HOH
HOH
2162
A
HOH
41
4
HOH
HOH
2163
A
HOH
96
4
HOH
HOH
2164
A
HOH
44
4
HOH
HOH
2165
A
HOH
81
4
HOH
HOH
2166
A
HOH
101
4
HOH
HOH
2167
A
HOH
93
4
HOH
HOH
2168
A
HOH
69
4
HOH
HOH
2169
A
HOH
66
4
HOH
HOH
2170
A
HOH
80
4
HOH
HOH
2171
A
HOH
43
4
HOH
HOH
2172
A
HOH
90
4
HOH
HOH
2173
A
HOH
70
4
HOH
HOH
2174
A
HOH
45
4
HOH
HOH
2175
A
HOH
63
4
HOH
HOH
2176
A
HOH
82
4
HOH
HOH
2177
A
n
1
1525
A
n
2
1526
A
n
3
1527
A
n
4
1528
A
n
5
1529
A
n
6
1530
A
n
7
1531
A
n
8
1532
A
ILE
11
n
9
ILE
1533
A
GLN
12
n
10
GLN
1534
A
LEU
13
n
11
LEU
1535
A
ASP
14
n
12
ASP
1536
A
ASP
15
n
13
ASP
1537
A
ASP
16
n
14
ASP
1538
A
ALA
17
n
15
ALA
1539
A
ARG
18
n
16
ARG
1540
A
VAL
19
n
17
VAL
1541
A
PHE
20
n
18
PHE
1542
A
VAL
21
n
19
VAL
1543
A
GLN
22
n
20
GLN
1544
A
ALA
23
n
21
ALA
1545
A
ASN
24
n
22
ASN
1546
A
MET
25
n
23
MET
1547
A
ALA
26
n
24
ASP
1548
A
CYS
27
n
25
CYS
1549
A
LEU
28
n
26
LEU
1550
A
PRO
29
n
27
PRO
1551
A
THR
30
n
28
THR
1552
A
ASP
31
n
29
ASP
1553
A
TRP
32
n
30
TRP
1554
A
ARG
33
n
31
ARG
1555
A
LEU
34
n
32
LEU
1556
A
VAL
35
n
33
VAL
1557
A
ASN
36
n
34
ASN
1558
A
LYS
37
n
35
LYS
1559
A
PHE
38
n
36
PHE
1560
A
ASP
39
n
37
ASP
1561
A
SER
40
n
38
SER
1562
A
VAL
41
n
39
VAL
1563
A
ASP
42
n
40
ASP
1564
A
GLY
43
n
41
GLY
1565
A
VAL
44
n
42
VAL
1566
A
ARG
45
n
43
ARG
1567
A
THR
46
n
44
THR
1568
A
ILE
47
n
45
ILE
1569
A
LYS
48
n
46
LYS
1570
A
TYR
49
n
47
TYR
1571
A
PHE
50
n
48
PHE
1572
A
GLU
51
n
49
GLU
1573
A
CYS
52
n
50
CYS
1574
A
PRO
53
n
51
PRO
1575
A
GLY
54
n
52
GLY
1576
A
GLY
55
n
53
GLY
1577
A
ILE
56
n
54
ILE
1578
A
PHE
57
n
55
PHE
1579
A
VAL
58
n
56
VAL
1580
A
SER
59
n
57
SER
1581
A
SER
60
n
58
SER
1582
A
GLN
61
n
59
GLN
1583
A
GLY
62
n
60
GLY
1584
A
LYS
63
n
61
LYS
1585
A
LYS
64
n
62
LYS
1586
A
PHE
65
n
63
PHE
1587
A
GLY
66
n
64
GLY
1588
A
TYR
67
n
65
TYR
1589
A
VAL
68
n
66
VAL
1590
A
GLN
69
n
67
GLN
1591
A
ASN
70
n
68
ASN
1592
A
GLY
71
n
69
GLY
1593
A
SER
72
n
70
SER
1594
A
PHE
73
n
71
PHE
1595
A
LYS
74
n
72
LYS
1596
A
GLU
75
n
73
GLU
1597
A
ALA
76
n
74
ALA
1598
A
SER
77
n
75
SER
1599
A
VAL
78
n
76
VAL
1600
A
SER
79
n
77
SER
1601
A
GLN
80
n
78
GLN
1602
A
ILE
81
n
79
ILE
1603
A
ARG
82
n
80
ARG
1604
A
ALA
83
n
81
ALA
1605
A
LEU
84
n
82
LEU
1606
A
LEU
85
n
83
LEU
1607
A
ALA
86
n
84
ALA
1608
A
ASN
87
n
85
ASN
1609
A
LYS
88
n
86
LYS
1610
A
VAL
89
n
87
VAL
1611
A
ASP
90
n
88
ASP
1612
A
VAL
91
n
89
VAL
1613
A
LEU
92
n
90
LEU
1614
A
CYS
93
n
91
CYS
1615
A
THR
94
n
92
THR
1616
A
VAL
95
n
93
VAL
1617
A
ASP
96
n
94
ASP
1618
A
GLY
97
n
95
GLY
1619
A
VAL
98
n
96
VAL
1620
A
ASN
99
n
97
ASN
1621
A
PHE
100
n
98
PHE
1622
A
ARG
101
n
99
ARG
1623
A
SER
102
n
100
SER
1624
A
CYS
103
n
101
CYS
1625
A
CYS
104
n
102
CYS
1626
A
VAL
105
n
103
VAL
1627
A
ALA
106
n
104
ALA
1628
A
GLU
107
n
105
GLU
1629
A
GLY
108
n
106
GLY
1630
A
GLU
109
n
107
GLU
1631
A
VAL
110
n
108
VAL
1632
A
PHE
111
n
109
PHE
1633
A
GLY
112
n
110
GLY
1634
A
LYS
113
n
111
LYS
1635
A
THR
114
n
112
THR
1636
A
LEU
115
n
113
LEU
1637
A
GLY
116
n
114
GLY
1638
A
SER
117
n
115
SER
1639
A
VAL
118
n
116
VAL
1640
A
PHE
119
n
117
PHE
1641
A
CYS
120
n
118
CYS
1642
A
ASP
121
n
119
ASP
1643
A
GLY
122
n
120
GLY
1644
A
ILE
123
n
121
ILE
1645
A
ASN
124
n
122
ASN
1646
A
VAL
125
n
123
VAL
1647
A
THR
126
n
124
THR
1648
A
LYS
127
n
125
LYS
1649
A
VAL
128
n
126
VAL
1650
A
ARG
129
n
127
ARG
1651
A
CYS
130
n
128
CYS
1652
A
SER
131
n
129
SER
1653
A
ALA
132
n
130
ALA
1654
A
ILE
133
n
131
ILE
1655
A
TYR
134
n
132
TYR
1656
A
LYS
135
n
133
LYS
1657
A
GLY
136
n
134
GLY
1658
A
LYS
137
n
135
LYS
1659
A
VAL
138
n
136
VAL
1660
A
PHE
139
n
137
PHE
1661
A
PHE
140
n
138
PHE
1662
A
GLN
141
n
139
GLN
1663
A
TYR
142
n
140
TYR
1664
A
SER
143
n
141
SER
1665
A
ASP
144
n
142
ASP
1666
A
LEU
145
n
143
LEU
1667
A
SER
146
n
144
SER
1668
A
GLU
147
n
145
GLU
1669
A
ALA
148
n
146
ALA
1670
A
ASP
149
n
147
ASP
1671
A
LEU
150
n
148
LEU
1672
A
VAL
151
n
149
VAL
1673
A
ALA
152
n
150
ALA
1674
A
VAL
153
n
151
VAL
1675
A
LYS
154
n
152
LYS
1676
A
ASP
155
n
153
ASP
1677
A
ALA
156
n
154
ALA
1678
A
PHE
157
n
155
PHE
1679
A
GLY
158
n
156
GLY
1680
A
PHE
159
n
157
PHE
1681
A
ASP
160
n
158
ASP
1682
A
GLU
161
n
159
GLU
1683
A
PRO
162
n
160
PRO
1684
A
GLN
163
n
161
GLN
1685
A
LEU
164
n
162
LEU
1686
A
LEU
165
n
163
LEU
1687
A
LYS
166
n
164
LYS
1688
A
TYR
167
n
165
TYR
1689
A
TYR
168
n
166
TYR
1690
A
THR
169
n
167
THR
1691
A
MET
170
n
168
MET
1692
A
LEU
171
n
169
LEU
1693
A
GLY
172
n
170
GLY
1694
A
MET
173
n
171
MET
1695
A
CYS
174
n
172
CYS
1696
A
LYS
175
n
173
LYS
1697
A
TRP
176
n
174
TRP
1698
A
PRO
177
n
175
PRO
1699
A
VAL
178
n
176
VAL
1700
A
VAL
179
n
177
VAL
1701
A
VAL
180
n
178
VAL
1702
A
CYS
181
n
179
CYS
1703
A
GLY
182
n
180
GLY
1704
A
ASN
183
n
181
ASN
1705
A
TYR
184
n
182
TYR
1706
A
PHE
185
n
183
PHE
1707
A
ALA
186
n
184
ALA
1708
A
PHE
187
n
185
PHE
1709
A
LYS
188
n
186
LYS
1710
A
GLN
189
n
187
GLN
1711
A
SER
190
n
188
SER
1712
A
ASN
191
n
189
ASN
1713
A
ASN
192
n
190
ASN
1714
A
ASN
193
n
191
ASN
1715
A
OCS
194
n
192
OCS
1716
A
TYR
195
n
193
TYR
1717
A
ILE
196
n
194
ILE
1718
A
ASN
197
n
195
ASN
1719
A
VAL
198
n
196
VAL
1720
A
ALA
199
n
197
ALA
1721
A
CYS
200
n
198
CYS
1722
A
LEU
201
n
199
LEU
1723
A
MET
202
n
200
MET
1724
A
LEU
203
n
201
LEU
1725
A
GLN
204
n
202
GLN
1726
A
HIS
205
n
203
HIS
1727
A
LEU
206
n
204
LEU
1728
A
SER
207
n
205
SER
1729
A
LEU
208
n
206
LEU
1730
A
LYS
209
n
207
LYS
1731
A
PHE
210
n
208
PHE
1732
A
PRO
211
n
209
PRO
1733
A
LYS
212
n
210
LYS
1734
A
TRP
213
n
211
TRP
1735
A
GLN
214
n
212
GLN
1736
A
TRP
215
n
213
TRP
1737
A
GLN
216
n
214
GLN
1738
A
GLU
217
n
215
GLU
1739
A
ALA
218
n
216
ALA
1740
A
TRP
219
n
217
TRP
1741
A
ASN
220
n
218
ASN
1742
A
GLU
221
n
219
GLU
1743
A
PHE
222
n
220
PHE
1744
A
ARG
223
n
221
ARG
1745
A
SER
224
n
222
SER
1746
A
GLY
225
n
223
GLY
1747
A
LYS
226
n
224
LYS
1748
A
PRO
227
n
225
PRO
1749
A
LEU
228
n
226
LEU
1750
A
ARG
229
n
227
ARG
1751
A
PHE
230
n
228
PHE
1752
A
VAL
231
n
229
VAL
1753
A
SER
232
n
230
SER
1754
A
LEU
233
n
231
LEU
1755
A
VAL
234
n
232
VAL
1756
A
LEU
235
n
233
LEU
1757
A
ALA
236
n
234
ALA
1758
A
LYS
237
n
235
LYS
1759
A
GLY
238
n
236
GLY
1760
A
SER
239
n
237
SER
1761
A
PHE
240
n
238
PHE
1762
A
LYS
241
n
239
LYS
1763
A
PHE
242
n
240
PHE
1764
A
ASN
243
n
241
ASN
1765
A
GLU
244
n
242
GLU
1766
A
PRO
245
n
243
PRO
1767
A
SER
246
n
244
SER
1768
A
ASP
247
n
245
ASP
1769
A
SER
248
n
246
SER
1770
A
ILE
249
n
247
ILE
1771
A
ASP
250
n
248
ASP
1772
A
PHE
251
n
249
PHE
1773
A
MET
252
n
250
MET
1774
A
ARG
253
n
251
ARG
1775
A
VAL
254
n
252
VAL
1776
A
VAL
255
n
253
VAL
1777
A
LEU
256
n
254
LEU
1778
A
ARG
257
n
255
ARG
1779
A
GLU
258
n
256
GLU
1780
A
ALA
259
n
257
ALA
1781
A
ASP
260
n
258
ASP
1782
A
LEU
261
n
259
LEU
1783
A
SER
262
n
260
SER
1784
A
GLY
263
n
261
GLY
1785
A
ALA
264
n
262
ALA
1786
A
THR
265
n
263
THR
1787
A
CYS
266
n
264
CYS
1788
A
ASN
267
n
265
ASN
1789
A
LEU
268
n
266
LEU
1790
A
GLU
269
n
267
GLU
1791
A
PHE
270
n
268
PHE
1792
A
VAL
271
n
269
VAL
1793
A
CYS
272
n
270
CYS
1794
A
LYS
273
n
271
LYS
1795
A
CYS
274
n
272
CYS
1796
A
GLY
275
n
273
GLY
1797
A
VAL
276
n
274
VAL
1798
A
LYS
277
n
275
LYS
1799
A
GLN
278
n
276
GLN
1800
A
GLU
279
n
277
GLU
1801
A
GLN
280
n
278
GLN
1802
A
ARG
281
n
279
ARG
1803
A
LYS
282
n
280
LYS
1804
A
GLY
283
n
281
GLY
1805
A
VAL
284
n
282
VAL
1806
A
ASP
285
n
283
ASP
1807
A
ALA
286
n
284
ALA
1808
A
VAL
287
n
285
VAL
1809
A
MET
288
n
286
MET
1810
A
HIS
289
n
287
HIS
1811
A
PHE
290
n
288
PHE
1812
A
GLY
291
n
289
GLY
1813
A
THR
292
n
290
THR
1814
A
LEU
293
n
291
LEU
1815
A
ASP
294
n
292
ASP
1816
A
LYS
295
n
293
LYS
1817
A
GLY
296
n
294
GLY
1818
A
ASP
297
n
295
ASP
1819
A
LEU
298
n
296
LEU
1820
A
VAL
299
n
297
VAL
1821
A
ARG
300
n
298
ARG
1822
A
GLY
301
n
299
GLY
1823
A
TYR
302
n
300
TYR
1824
A
ASN
303
n
301
ASN
1825
A
ILE
304
n
302
ILE
1826
A
ALA
305
n
303
ALA
1827
A
CYS
306
n
304
CYS
1828
A
THR
307
n
305
THR
1829
A
CYS
308
n
306
CYS
1830
A
GLY
309
n
307
GLY
1831
A
SER
310
n
308
SER
1832
A
LYS
311
n
309
LYS
1833
A
LEU
312
n
310
LEU
1834
A
VAL
313
n
311
VAL
1835
A
HIS
314
n
312
HIS
1836
A
CYS
315
n
313
CYS
1837
A
THR
316
n
314
THR
1838
A
GLN
317
n
315
GLN
1839
A
PHE
318
n
316
PHE
1840
A
ASN
319
n
317
ASN
1841
A
VAL
320
n
318
VAL
1842
A
PRO
321
n
319
PRO
1843
A
PHE
322
n
320
PHE
1844
A
LEU
323
n
321
LEU
1845
A
ILE
324
n
322
ILE
1846
A
CYS
325
n
323
CYS
1847
A
SER
326
n
324
SER
1848
A
ASN
327
n
325
ASN
1849
A
THR
328
n
326
THR
1850
A
PRO
329
n
327
PRO
1851
A
GLU
330
n
328
GLU
1852
A
GLY
331
n
329
GLY
1853
A
ARG
332
n
330
ARG
1854
A
LYS
333
n
331
LYS
1855
A
LEU
334
n
332
LEU
1856
A
PRO
335
n
333
PRO
1857
A
ASP
336
n
334
ASP
1858
A
ASP
337
n
335
ASP
1859
A
VAL
338
n
336
VAL
1860
A
VAL
339
n
337
VAL
1861
A
ALA
340
n
338
ALA
1862
A
ALA
341
n
339
ALA
1863
A
ASN
342
n
340
ASN
1864
A
ILE
343
n
341
ILE
1865
A
PHE
344
n
342
PHE
1866
A
THR
345
n
343
THR
1867
A
GLY
346
n
344
GLY
1868
A
GLY
347
n
345
GLY
1869
A
SER
348
n
346
SER
1870
A
VAL
349
n
347
VAL
1871
A
GLY
350
n
348
GLY
1872
A
HIS
351
n
349
HIS
1873
A
TYR
352
n
350
TYR
1874
A
THR
353
n
351
THR
1875
A
HIS
354
n
352
HIS
1876
A
VAL
355
n
353
VAL
1877
A
LYS
356
n
354
LYS
1878
A
CYS
357
n
355
CYS
1879
A
LYS
358
n
356
LYS
1880
A
PRO
359
n
357
PRO
1881
A
LYS
360
n
358
LYS
1882
A
TYR
361
n
359
TYR
1883
A
GLN
362
n
360
GLN
1884
A
LEU
363
n
361
LEU
1885
A
TYR
364
n
362
TYR
1886
A
ASP
365
n
363
ASP
1887
A
ALA
366
n
364
ALA
1888
A
CYS
367
n
365
CYS
1889
A
ASN
368
n
366
ASN
1890
A
VAL
369
n
367
VAL
1891
A
ASN
370
n
368
ASN
1892
A
LYS
371
n
369
LYS
1893
A
VAL
372
n
370
VAL
1894
A
SER
373
n
371
SER
1895
A
GLU
374
n
372
GLU
1896
A
ALA
375
n
373
ALA
1897
A
LYS
376
n
374
LYS
1898
A
GLY
377
n
375
GLY
1899
A
ASN
378
n
376
ASN
1900
A
PHE
379
n
377
PHE
1901
A
THR
380
n
378
THR
1902
A
ASP
381
n
379
ASP
1903
A
CYS
382
n
380
CYS
1904
A
LEU
383
n
381
LEU
1905
A
TYR
384
n
382
TYR
1906
A
LEU
385
n
383
LEU
1907
A
LYS
386
n
384
LYS
1908
A
ASN
387
n
385
ASN
1909
A
LEU
388
n
386
LEU
1910
A
n
387
1911
A
0.1717
-0.0729
0.0176
0.2078
-0.0356
0.2112
-0.0061
0.3882
0.2063
0.2059
-0.0205
0.5545
-0.2049
0.3337
0.0001
0.6562
-0.1808
0.2030
0.8827
-0.1098
0.6375
refined
-75.7485
21.6946
-6.1933
X-RAY DIFFRACTION
0.0521
-0.1737
-0.0282
0.6162
-0.0067
0.8267
-0.0174
0.1400
0.0784
0.1842
-0.1181
0.1145
-0.1038
-0.5729
-0.3423
0.3235
0.1337
-0.1135
0.5135
-0.0860
0.1117
refined
-49.6391
19.1937
5.4787
X-RAY DIFFRACTION
1.0198
0.0005
0.5789
0.5051
0.1918
0.5285
0.0095
-0.2207
0.0926
-0.0874
0.0062
0.1082
0.3001
0.0081
0.0059
0.2938
0.0330
-0.0421
0.1808
-0.0434
0.0823
refined
-32.8902
20.8193
23.2140
X-RAY DIFFRACTION
0.7674
-0.0279
-0.1973
0.6261
-0.1537
0.0931
-0.0534
-0.2320
-0.0520
0.1340
-0.1639
-0.1279
-0.0118
-0.0838
-0.0628
0.2762
0.1470
-0.0595
0.2143
-0.0905
0.1111
refined
-15.4156
22.2662
36.7926
X-RAY DIFFRACTION
A
11
A
82
X-RAY DIFFRACTION
1
(chain A and resid 11:82)
A
83
A
144
X-RAY DIFFRACTION
2
(chain A and resid 83:144)
A
145
A
259
X-RAY DIFFRACTION
3
(chain A and resid 145:259)
A
260
A
388
X-RAY DIFFRACTION
4
(chain A and resid 260:388)
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
3
trimeric
10500
-35
50990
A
CYS
1794
A
SG
CYS
270
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
CYS
1796
A
SG
CYS
272
1_555
98.9
A
CYS
1794
A
SG
CYS
270
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
CYS
1828
A
SG
CYS
304
1_555
115.3
A
CYS
1796
A
SG
CYS
272
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
CYS
1828
A
SG
CYS
304
1_555
110.5
A
CYS
1794
A
SG
CYS
270
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
CYS
1830
A
SG
CYS
306
1_555
93.2
A
CYS
1796
A
SG
CYS
272
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
CYS
1830
A
SG
CYS
306
1_555
120.7
A
CYS
1828
A
SG
CYS
304
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
CYS
1830
A
SG
CYS
306
1_555
115.7
A
OCS
1716
modified residue
A
OCS
192
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
8_555
-z,x+1/2,-y+1/2
crystal symmetry operation
0.0000000000
77.7880000000
77.7880000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
11_455
y-1/2,-z+1/2,-x
crystal symmetry operation
-77.7880000000
77.7880000000
0.0000000000
A
N
VAL
1557
A
N
VAL
33
A
O
TYR
1571
A
O
TYR
47
A
N
ILE
1569
A
N
ILE
45
A
O
SER
1582
A
O
SER
58
A
N
SER
1581
A
N
SER
57
A
O
GLY
1588
A
O
GLY
64
A
N
TYR
1589
A
N
TYR
65
A
O
LYS
1596
A
O
LYS
72
A
O
VAL
1627
A
O
VAL
103
A
N
VAL
1611
A
N
VAL
87
A
N
LEU
1614
A
N
LEU
90
A
O
PHE
1661
A
O
PHE
137
A
O
PHE
1662
A
O
PHE
138
A
N
PHE
1641
A
N
PHE
117
A
N
CYS
1642
A
N
CYS
118
A
O
ILE
1645
A
O
ILE
121
A
N
CYS
1703
A
N
CYS
179
A
O
TYR
1706
A
O
TYR
182
A
O
GLU
1801
A
O
GLU
277
A
N
LEU
1790
A
N
LEU
266
A
N
VAL
1793
A
N
VAL
269
A
O
LEU
1834
A
O
LEU
310
A
O
VAL
1835
A
O
VAL
311
A
N
TYR
1824
A
N
TYR
300
A
N
HIS
1811
A
N
HIS
287
A
O
SER
1848
A
O
SER
324
A
N
CYS
1847
A
N
CYS
323
A
O
CYS
1904
A
O
CYS
380
A
O
LEU
1905
A
O
LEU
381
A
N
ALA
1862
A
N
ALA
338
A
N
THR
1867
A
N
THR
343
A
O
HIS
1873
A
O
HIS
349
A
N
HIS
1876
A
N
HIS
352
A
O
TYR
1886
A
O
TYR
362
A
N
LEU
1885
A
N
LEU
361
A
O
ASN
1892
A
O
ASN
368
1
A
CG
ASP
1548
A
CG
ASP
24
1
Y
1
A
OD1
ASP
1548
A
OD1
ASP
24
1
Y
1
A
OD2
ASP
1548
A
OD2
ASP
24
1
Y
1
A
GLU
1525
A
GLU
1
1
Y
1
A
VAL
1526
A
VAL
2
1
Y
1
A
GLU
1527
A
GLU
3
1
Y
1
A
ALA
1528
A
ALA
4
1
Y
1
A
LEU
1529
A
LEU
5
1
Y
1
A
ARG
1530
A
ARG
6
1
Y
1
A
HIS
1531
A
HIS
7
1
Y
1
A
ASP
1532
A
ASP
8
1
Y
1
A
LYS
1911
A
LYS
387
1
Y
1
A
A
OE2
O
GLU
HOH
1743
2101
1.99
1
A
A
O
O
HOH
HOH
2109
2163
2.12
1_555
16_555
1
A
CYS
1549
-163.44
80.82
1
A
PRO
1551
-58.12
175.18
1
A
ASP
1553
-66.97
0.24
1
A
TRP
1554
-103.08
-160.74
1
A
ARG
1555
-178.71
126.55
1
A
VAL
1557
-100.22
-62.53
1
A
ASN
1592
55.62
-107.21
1
A
TYR
1664
-151.95
5.92
1
A
LYS
1697
-106.28
58.71
1
A
SER
1870
-51.35
-75.05
1
A
VAL
1871
-71.14
-92.40
1
A
ALA
1888
55.16
-108.28
201.890
54.5100
13.690
0.2220
0.1708
0.1734
2.6009
49.1970
998
18388
19386
5.1500
99.8700
0.8567
0.2600
1
FREE R-VALUE
1.370
SAD
21.1400
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
2.6009
49.1970
77
3068
74.19
47.26
31
0
2960
378
0.008
3058
1.138
4125
0.076
447
0.004
526
13.890
1104
0.2845
0.2098
2.7380
136
2612
2748
7
99.0000
0.2648
0.1982
2.9095
149
2570
2719
7
100.0000
0.2375
0.1787
3.1341
136
2631
2767
7
100.0000
0.2313
0.1748
3.4495
137
2604
2741
7
100.0000
0.2022
0.1552
3.9484
150
2609
2759
7
100.0000
0.1934
0.1414
4.9739
141
2645
2786
7
100.0000
0.2154
0.1850
49.2062
149
2717
2866
7
100.0000
30.850
2.60
50.00
4YPT
21716
0.057
1
38.2
10.2
99.7
0.749
2.60
2.64
4.5
1
10.2
100
data reduction
HKL-2000
refinement
PHENIX
(phenix.refine: 1.8_1069)
data extraction
PDB_EXTRACT
3.14
data scaling
HKL-2000
data reduction
DENZO
data scaling
SCALEPACK
X-ray structural of three tandemly linked domains of nsp3 from murine hepatitis virus at 2.60 Angstroms resolution
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
ASP
1536
A
ASP
12
HELX_P
A
ASN
1546
A
ASN
22
1
AA1
11
A
SER
1599
A
SER
75
HELX_P
A
ALA
1608
A
ALA
84
1
AA2
10
A
VAL
1632
A
VAL
108
HELX_P
A
GLY
1638
A
GLY
114
1
AA3
7
A
SER
1653
A
SER
129
HELX_P
A
LYS
1657
A
LYS
133
5
AA4
5
A
SER
1668
A
SER
144
HELX_P
A
PHE
1679
A
PHE
155
1
AA5
12
A
ASP
1682
A
ASP
158
HELX_P
A
CYS
1696
A
CYS
172
1
AA6
15
A
ASN
1715
A
ASN
191
HELX_P
A
GLN
1726
A
GLN
202
1
AA7
12
A
LYS
1734
A
LYS
210
HELX_P
A
SER
1746
A
SER
222
1
AA8
13
A
PRO
1749
A
PRO
225
HELX_P
A
GLY
1760
A
GLY
236
1
AA9
12
A
ASP
1769
A
ASP
245
HELX_P
A
ALA
1781
A
ALA
257
1
AB1
13
A
GLY
1805
A
GLY
281
HELX_P
A
VAL
1809
A
VAL
285
1
AB2
5
A
ASP
1816
A
ASP
292
HELX_P
A
GLY
1823
A
GLY
299
1
AB3
8
covale
1.329
both
A
ASN
1715
A
C
ASN
191
1_555
A
OCS
1716
A
N
OCS
192
1_555
covale
1.327
both
A
OCS
1716
A
C
OCS
192
1_555
A
TYR
1717
A
N
TYR
193
1_555
metalc
2.432
A
CYS
1794
A
SG
CYS
270
1_555
A
ZN
2001
B
ZN
ZN
1_555
metalc
2.338
A
CYS
1796
A
SG
CYS
272
1_555
A
ZN
2001
B
ZN
ZN
1_555
metalc
2.347
A
CYS
1828
A
SG
CYS
304
1_555
A
ZN
2001
B
ZN
ZN
1_555
metalc
2.270
A
CYS
1830
A
SG
CYS
306
1_555
A
ZN
2001
B
ZN
ZN
1_555
HYDROLASE
thumb-palm-fingers architecture, HYDROLASE
A
LYS
1880
A
LYS
356
1
A
PRO
1881
A
PRO
357
-6.92
A
GLY
1899
A
GLY
375
1
A
ASN
1900
A
ASN
376
-0.01
R1AB_CVMA5
UNP
1
1525
P0C6X9
EVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIR
ALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGFDEP
QLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKF
NEPSDSIDFMRVVLREADLSGATCNLEFVCKCGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLVHCTQFNVPF
LICSNTPEGRKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKNLK
1525
1911
4YPT
1525
1911
P0C6X9
A
1
1
387
5
5
2
4
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
1556
A
LEU
32
A
VAL
1563
A
VAL
39
A
VAL
1566
A
VAL
42
A
CYS
1574
A
CYS
50
A
ILE
1578
A
ILE
54
A
GLN
1583
A
GLN
59
A
LYS
1586
A
LYS
62
A
GLN
1591
A
GLN
67
A
SER
1594
A
SER
70
A
GLU
1597
A
GLU
73
A
ARG
1623
A
ARG
99
A
ALA
1628
A
ALA
104
A
LYS
1610
A
LYS
86
A
THR
1616
A
THR
92
A
VAL
1660
A
VAL
136
A
GLN
1663
A
GLN
139
A
VAL
1640
A
VAL
116
A
CYS
1642
A
CYS
118
A
ILE
1645
A
ILE
121
A
ASN
1646
A
ASN
122
A
VAL
1700
A
VAL
176
A
CYS
1703
A
CYS
179
A
TYR
1706
A
TYR
182
A
PHE
1709
A
PHE
185
A
GLY
1797
A
GLY
273
A
LYS
1804
A
LYS
280
A
THR
1787
A
THR
263
A
CYS
1794
A
CYS
270
A
GLY
1831
A
GLY
307
A
ASN
1841
A
ASN
317
A
TYR
1824
A
TYR
300
A
CYS
1828
A
CYS
304
A
MET
1810
A
MET
286
A
PHE
1812
A
PHE
288
A
LEU
1845
A
LEU
321
A
GLU
1852
A
GLU
328
A
PHE
1901
A
PHE
377
A
TYR
1906
A
TYR
382
A
ALA
1862
A
ALA
338
A
THR
1867
A
THR
343
A
HIS
1873
A
HIS
349
A
LYS
1878
A
LYS
354
A
GLN
1884
A
GLN
360
A
ASP
1887
A
ASP
363
A
ASN
1890
A
ASN
366
A
LYS
1893
A
LYS
369
binding site for residue ZN A 2001
A
ZN
2001
Software
4
binding site for residue GOL A 2002
A
GOL
2002
Software
5
binding site for residue GOL A 2003
A
GOL
2003
Software
5
binding site for residue GOL A 2004
A
GOL
2004
Software
5
binding site for residue GOL A 2005
A
GOL
2005
Software
2
binding site for residue GOL A 2006
A
GOL
2006
Software
3
A
CYS
1794
A
CYS
270
4
1_555
A
CYS
1796
A
CYS
272
4
1_555
A
CYS
1828
A
CYS
304
4
1_555
A
CYS
1830
A
CYS
306
4
1_555
A
ASP
1643
A
ASP
119
5
1_555
A
GLY
1644
A
GLY
120
5
1_555
A
PHE
1662
A
PHE
138
5
1_555
A
TYR
1689
A
TYR
165
5
1_555
A
TYR
1690
A
TYR
166
5
1_555
A
SER
1712
A
SER
188
5
1_555
A
ASN
1713
A
ASN
189
5
1_555
A
SER
1870
A
SER
346
5
11_455
A
VAL
1871
A
VAL
347
5
11_455
A
HIS
1873
A
HIS
349
5
11_455
A
ARG
1803
A
ARG
279
5
1_555
A
HIS
1811
A
HIS
287
5
1_555
A
PHE
1812
A
PHE
288
5
1_555
A
TYR
1824
A
TYR
300
5
1_555
A
ILE
1826
A
ILE
302
5
1_555
A
GLY
1785
A
GLY
261
2
1_555
A
ASN
1841
A
ASN
317
2
1_555
A
SER
1761
A
SER
237
3
1_555
A
ARG
1779
A
ARG
255
3
1_555
A
HOH
2134
H
HOH
3
1_555
199
I 21 3