0.014788 0.000000 0.000000 -0.000000 0.014788 0.000000 0.000000 -0.000000 0.009182 0.00000 0.00000 0.00000 Maruyama, Y. Takase, R. Oiki, S. Mikami, B. Murata, K. Hashimoto, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 67.621 67.621 108.907 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Proteins PSFGEY 0867 1097-0134 84 934 947 10.1002/prot.25042 27028675 Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity 2016 10.2210/pdb4z9x/pdb pdb_00004z9x 100 1 CCD 2012-04-20 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL38B1 SPring-8 1.0000 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 28208.229 Gluconate 5-dehydrogenase 1.1.1.127 1 man polymer 18.015 water 96 nat water 2-keto-3-deoxy-D-gluconic acid 5-dehydrogenase, Putative 5-keto-D-gluconate 5-reductase no no MENMFSLQGKIALITGASYGIGFEIAKAYAQAGATIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTDEAGIQQMVSQI EDEVGAIDILVNNAGIIRRTPMLEMAAEDFRQVIDIDLNAPFIVSKAVLPSMIAKGHGKIINICSMMSELGRETVSAYAA AKGGLKMLTKNIASEFGEANIQCNGIGPGYIATPQTAPLRERQADGSRHPFDQFIIAKTPAARWGTTEDLAGPAVFLASD ASNFVNGHILYVDGGILAYIGKQP MENMFSLQGKIALITGASYGIGFEIAKAYAQAGATIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTDEAGIQQMVSQI EDEVGAIDILVNNAGIIRRTPMLEMAAEDFRQVIDIDLNAPFIVSKAVLPSMIAKGHGKIINICSMMSELGRETVSAYAA AKGGLKMLTKNIASEFGEANIQCNGIGPGYIATPQTAPLRERQADGSRHPFDQFIIAKTPAARWGTTEDLAGPAVFLASD ASNFVNGHILYVDGGILAYIGKQP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 264 idnO, M5005_Spy0524, SPy_0636 301447 Streptococcus pyogenes serotype M1 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid Biological sequence 1 2.21 44.26 VAPOR DIFFUSION, SITTING DROP 5.6 PEG 4000, sodium citrate, ammonium sulfate, nicotinamide adenine dinucleotide, 5-keto-D-gluconic acid potassium salt 293 citation diffrn_source pdbx_struct_oper_list chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Data collection Database references Derived calculations Data collection Database references Refinement description 1 0 2015-04-29 1 1 2016-06-22 1 2 2020-02-19 1 3 2023-11-08 _citation.journal_id_CSD _diffrn_source.pdbx_synchrotron_site _pdbx_struct_oper_list.symmetry_operation _database_2.pdbx_DOI _database_2.pdbx_database_accession Japan Grants-in-aid from the Japan Society for the Promotion of Science Japan Program for Promotion of Basic Research Activities for Innovative Biosciences (PROBRAIN) of Japan Japan Targeted Proteins Research Program from the Ministry of Education, Culture, Sports, Science, and Technology (MEXT) of Japan Japan Research fellowships from the Japan Society for the Promotion of Science for Young Scientists N RCSB Y PDBJ 2015-04-13 REL REL HOH water 3CXR PDB experimental model HOH 41 2 HOH HOH 301 A HOH 90 2 HOH HOH 302 A HOH 63 2 HOH HOH 303 A HOH 28 2 HOH HOH 304 A HOH 47 2 HOH HOH 305 A HOH 60 2 HOH HOH 306 A HOH 22 2 HOH HOH 307 A HOH 54 2 HOH HOH 308 A HOH 49 2 HOH HOH 309 A HOH 77 2 HOH HOH 310 A HOH 12 2 HOH HOH 311 A HOH 73 2 HOH HOH 312 A HOH 84 2 HOH HOH 313 A HOH 88 2 HOH HOH 314 A HOH 40 2 HOH HOH 315 A HOH 15 2 HOH HOH 316 A HOH 56 2 HOH HOH 317 A HOH 61 2 HOH HOH 318 A HOH 68 2 HOH HOH 319 A HOH 19 2 HOH HOH 320 A HOH 35 2 HOH HOH 321 A HOH 85 2 HOH HOH 322 A HOH 43 2 HOH HOH 323 A HOH 57 2 HOH HOH 324 A HOH 89 2 HOH HOH 325 A HOH 8 2 HOH HOH 326 A HOH 62 2 HOH HOH 327 A HOH 7 2 HOH HOH 328 A HOH 51 2 HOH HOH 329 A HOH 18 2 HOH HOH 330 A HOH 42 2 HOH HOH 331 A HOH 29 2 HOH HOH 332 A HOH 1 2 HOH HOH 333 A HOH 93 2 HOH HOH 334 A HOH 81 2 HOH HOH 335 A HOH 4 2 HOH HOH 336 A HOH 6 2 HOH HOH 337 A HOH 52 2 HOH HOH 338 A HOH 69 2 HOH HOH 339 A HOH 45 2 HOH HOH 340 A HOH 66 2 HOH HOH 341 A HOH 33 2 HOH HOH 342 A HOH 31 2 HOH HOH 343 A HOH 58 2 HOH HOH 344 A HOH 86 2 HOH HOH 345 A HOH 25 2 HOH HOH 346 A HOH 95 2 HOH HOH 347 A HOH 2 2 HOH HOH 348 A HOH 74 2 HOH HOH 349 A HOH 48 2 HOH HOH 350 A HOH 9 2 HOH HOH 351 A HOH 14 2 HOH HOH 352 A HOH 72 2 HOH HOH 353 A HOH 11 2 HOH HOH 354 A HOH 82 2 HOH HOH 355 A HOH 5 2 HOH HOH 356 A HOH 53 2 HOH HOH 357 A HOH 83 2 HOH HOH 358 A HOH 27 2 HOH HOH 359 A HOH 79 2 HOH HOH 360 A HOH 36 2 HOH HOH 361 A HOH 64 2 HOH HOH 362 A HOH 38 2 HOH HOH 363 A HOH 46 2 HOH HOH 364 A HOH 21 2 HOH HOH 365 A HOH 13 2 HOH HOH 366 A HOH 70 2 HOH HOH 367 A HOH 26 2 HOH HOH 368 A HOH 32 2 HOH HOH 369 A HOH 3 2 HOH HOH 370 A HOH 37 2 HOH HOH 371 A HOH 39 2 HOH HOH 372 A HOH 91 2 HOH HOH 373 A HOH 10 2 HOH HOH 374 A HOH 30 2 HOH HOH 375 A HOH 59 2 HOH HOH 376 A HOH 16 2 HOH HOH 377 A HOH 20 2 HOH HOH 378 A HOH 17 2 HOH HOH 379 A HOH 94 2 HOH HOH 380 A HOH 50 2 HOH HOH 381 A HOH 92 2 HOH HOH 382 A HOH 87 2 HOH HOH 383 A HOH 76 2 HOH HOH 384 A HOH 24 2 HOH HOH 385 A HOH 34 2 HOH HOH 386 A HOH 23 2 HOH HOH 387 A HOH 75 2 HOH HOH 388 A HOH 65 2 HOH HOH 389 A HOH 80 2 HOH HOH 390 A HOH 96 2 HOH HOH 391 A HOH 44 2 HOH HOH 392 A HOH 67 2 HOH HOH 393 A HOH 97 2 HOH HOH 394 A HOH 55 2 HOH HOH 395 A HOH 78 2 HOH HOH 396 A n 1 1 A n 2 2 A ASN 3 n 3 ASN 3 A MET 4 n 4 MET 4 A PHE 5 n 5 PHE 5 A SER 6 n 6 SER 6 A LEU 7 n 7 LEU 7 A GLN 8 n 8 GLN 8 A GLY 9 n 9 GLY 9 A LYS 10 n 10 LYS 10 A ILE 11 n 11 ILE 11 A ALA 12 n 12 ALA 12 A LEU 13 n 13 LEU 13 A ILE 14 n 14 ILE 14 A THR 15 n 15 THR 15 A GLY 16 n 16 GLY 16 A ALA 17 n 17 ALA 17 A SER 18 n 18 SER 18 A TYR 19 n 19 TYR 19 A GLY 20 n 20 GLY 20 A ILE 21 n 21 ILE 21 A GLY 22 n 22 GLY 22 A PHE 23 n 23 PHE 23 A GLU 24 n 24 GLU 24 A ILE 25 n 25 ILE 25 A ALA 26 n 26 ALA 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A TYR 29 n 29 TYR 29 A ALA 30 n 30 ALA 30 A GLN 31 n 31 GLN 31 A ALA 32 n 32 ALA 32 A GLY 33 n 33 GLY 33 A ALA 34 n 34 ALA 34 A THR 35 n 35 THR 35 A ILE 36 n 36 ILE 36 A VAL 37 n 37 VAL 37 A PHE 38 n 38 PHE 38 A ASN 39 n 39 ASN 39 A ASP 40 n 40 ASP 40 A ILE 41 n 41 ILE 41 A LYS 42 n 42 LYS 42 A GLN 43 n 43 GLN 43 A GLU 44 n 44 GLU 44 A LEU 45 n 45 LEU 45 A VAL 46 n 46 VAL 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A GLY 49 n 49 GLY 49 A LEU 50 n 50 LEU 50 A ALA 51 n 51 ALA 51 A ALA 52 n 52 ALA 52 A TYR 53 n 53 TYR 53 A ARG 54 n 54 ARG 54 A GLU 55 n 55 GLU 55 A LEU 56 n 56 LEU 56 A GLY 57 n 57 GLY 57 A ILE 58 n 58 ILE 58 A GLU 59 n 59 GLU 59 A ALA 60 n 60 ALA 60 A HIS 61 n 61 HIS 61 A GLY 62 n 62 GLY 62 A TYR 63 n 63 TYR 63 A VAL 64 n 64 VAL 64 A CYS 65 n 65 CYS 65 A ASP 66 n 66 ASP 66 A VAL 67 n 67 VAL 67 A THR 68 n 68 THR 68 A ASP 69 n 69 ASP 69 A GLU 70 n 70 GLU 70 A ALA 71 n 71 ALA 71 A GLY 72 n 72 GLY 72 A ILE 73 n 73 ILE 73 A GLN 74 n 74 GLN 74 A GLN 75 n 75 GLN 75 A MET 76 n 76 MET 76 A VAL 77 n 77 VAL 77 A SER 78 n 78 SER 78 A GLN 79 n 79 GLN 79 A ILE 80 n 80 ILE 80 A GLU 81 n 81 GLU 81 A ASP 82 n 82 ASP 82 A GLU 83 n 83 GLU 83 A VAL 84 n 84 VAL 84 A GLY 85 n 85 GLY 85 A ALA 86 n 86 ALA 86 A ILE 87 n 87 ILE 87 A ASP 88 n 88 ASP 88 A ILE 89 n 89 ILE 89 A LEU 90 n 90 LEU 90 A VAL 91 n 91 VAL 91 A ASN 92 n 92 ASN 92 A ASN 93 n 93 ASN 93 A ALA 94 n 94 ALA 94 A GLY 95 n 95 GLY 95 A ILE 96 n 96 ILE 96 A ILE 97 n 97 ILE 97 A ARG 98 n 98 ARG 98 A ARG 99 n 99 ARG 99 A THR 100 n 100 THR 100 A PRO 101 n 101 PRO 101 A MET 102 n 102 MET 102 A LEU 103 n 103 LEU 103 A GLU 104 n 104 GLU 104 A MET 105 n 105 MET 105 A ALA 106 n 106 ALA 106 A ALA 107 n 107 ALA 107 A GLU 108 n 108 GLU 108 A ASP 109 n 109 ASP 109 A PHE 110 n 110 PHE 110 A ARG 111 n 111 ARG 111 A GLN 112 n 112 GLN 112 A VAL 113 n 113 VAL 113 A ILE 114 n 114 ILE 114 A ASP 115 n 115 ASP 115 A ILE 116 n 116 ILE 116 A ASP 117 n 117 ASP 117 A LEU 118 n 118 LEU 118 A ASN 119 n 119 ASN 119 A ALA 120 n 120 ALA 120 A PRO 121 n 121 PRO 121 A PHE 122 n 122 PHE 122 A ILE 123 n 123 ILE 123 A VAL 124 n 124 VAL 124 A SER 125 n 125 SER 125 A LYS 126 n 126 LYS 126 A ALA 127 n 127 ALA 127 A VAL 128 n 128 VAL 128 A LEU 129 n 129 LEU 129 A PRO 130 n 130 PRO 130 A SER 131 n 131 SER 131 A MET 132 n 132 MET 132 A ILE 133 n 133 ILE 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A GLY 136 n 136 GLY 136 A HIS 137 n 137 HIS 137 A GLY 138 n 138 GLY 138 A LYS 139 n 139 LYS 139 A ILE 140 n 140 ILE 140 A ILE 141 n 141 ILE 141 A ASN 142 n 142 ASN 142 A ILE 143 n 143 ILE 143 A CYS 144 n 144 CYS 144 A SER 145 n 145 SER 145 A MET 146 n 146 MET 146 A MET 147 n 147 MET 147 A SER 148 n 148 SER 148 A GLU 149 n 149 GLU 149 A LEU 150 n 150 LEU 150 A GLY 151 n 151 GLY 151 A ARG 152 n 152 ARG 152 A GLU 153 n 153 GLU 153 A THR 154 n 154 THR 154 A VAL 155 n 155 VAL 155 A SER 156 n 156 SER 156 A ALA 157 n 157 ALA 157 A TYR 158 n 158 TYR 158 A ALA 159 n 159 ALA 159 A ALA 160 n 160 ALA 160 A ALA 161 n 161 ALA 161 A LYS 162 n 162 LYS 162 A GLY 163 n 163 GLY 163 A GLY 164 n 164 GLY 164 A LEU 165 n 165 LEU 165 A LYS 166 n 166 LYS 166 A MET 167 n 167 MET 167 A LEU 168 n 168 LEU 168 A THR 169 n 169 THR 169 A LYS 170 n 170 LYS 170 A ASN 171 n 171 ASN 171 A ILE 172 n 172 ILE 172 A ALA 173 n 173 ALA 173 A SER 174 n 174 SER 174 A GLU 175 n 175 GLU 175 A PHE 176 n 176 PHE 176 A GLY 177 n 177 GLY 177 A GLU 178 n 178 GLU 178 A ALA 179 n 179 ALA 179 A ASN 180 n 180 ASN 180 A ILE 181 n 181 ILE 181 A GLN 182 n 182 GLN 182 A CYS 183 n 183 CYS 183 A ASN 184 n 184 ASN 184 A GLY 185 n 185 GLY 185 A ILE 186 n 186 ILE 186 A GLY 187 n 187 GLY 187 A PRO 188 n 188 PRO 188 A GLY 189 n 189 GLY 189 A TYR 190 n 190 TYR 190 A ILE 191 n 191 ILE 191 A ALA 192 n 192 ALA 192 A THR 193 n 193 THR 193 A PRO 194 n 194 PRO 194 A GLN 195 n 195 GLN 195 A THR 196 n 196 THR 196 A ALA 197 n 197 ALA 197 A PRO 198 n 198 PRO 198 A LEU 199 n 199 LEU 199 A ARG 200 n 200 ARG 200 A GLU 201 n 201 GLU 201 A ARG 202 n 202 ARG 202 A n 203 203 A n 204 204 A n 205 205 A n 206 206 A n 207 207 A ARG 208 n 208 ARG 208 A HIS 209 n 209 HIS 209 A PRO 210 n 210 PRO 210 A PHE 211 n 211 PHE 211 A ASP 212 n 212 ASP 212 A GLN 213 n 213 GLN 213 A PHE 214 n 214 PHE 214 A ILE 215 n 215 ILE 215 A ILE 216 n 216 ILE 216 A ALA 217 n 217 ALA 217 A LYS 218 n 218 LYS 218 A THR 219 n 219 THR 219 A PRO 220 n 220 PRO 220 A ALA 221 n 221 ALA 221 A ALA 222 n 222 ALA 222 A ARG 223 n 223 ARG 223 A TRP 224 n 224 TRP 224 A GLY 225 n 225 GLY 225 A THR 226 n 226 THR 226 A THR 227 n 227 THR 227 A GLU 228 n 228 GLU 228 A ASP 229 n 229 ASP 229 A LEU 230 n 230 LEU 230 A ALA 231 n 231 ALA 231 A GLY 232 n 232 GLY 232 A PRO 233 n 233 PRO 233 A ALA 234 n 234 ALA 234 A VAL 235 n 235 VAL 235 A PHE 236 n 236 PHE 236 A LEU 237 n 237 LEU 237 A ALA 238 n 238 ALA 238 A SER 239 n 239 SER 239 A ASP 240 n 240 ASP 240 A ALA 241 n 241 ALA 241 A SER 242 n 242 SER 242 A ASN 243 n 243 ASN 243 A PHE 244 n 244 PHE 244 A VAL 245 n 245 VAL 245 A ASN 246 n 246 ASN 246 A GLY 247 n 247 GLY 247 A HIS 248 n 248 HIS 248 A ILE 249 n 249 ILE 249 A LEU 250 n 250 LEU 250 A TYR 251 n 251 TYR 251 A VAL 252 n 252 VAL 252 A ASP 253 n 253 ASP 253 A GLY 254 n 254 GLY 254 A GLY 255 n 255 GLY 255 A ILE 256 n 256 ILE 256 A LEU 257 n 257 LEU 257 A ALA 258 n 258 ALA 258 A TYR 259 n 259 TYR 259 A ILE 260 n 260 ILE 260 A GLY 261 n 261 GLY 261 A LYS 262 n 262 LYS 262 A GLN 263 n 263 GLN 263 A PRO 264 n 264 PRO 264 A author_and_software_defined_assembly PISA 4 tetrameric 16070 -107 34270 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_555 -y,-x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O HIS 61 A O HIS 61 A N PHE 38 A N PHE 38 A O THR 35 A O THR 35 A N ALA 12 A N ALA 12 A N LEU 13 A N LEU 13 A O VAL 91 A O VAL 91 A N LEU 90 A N LEU 90 A O ILE 141 A O ILE 141 A N ASN 142 A N ASN 142 A O ASN 184 A O ASN 184 A N GLY 185 A N GLY 185 A O LEU 250 A O LEU 250 1 A HOH 366 B HOH 1 A MET 1 A MET 1 1 Y 1 A GLU 2 A GLU 2 1 Y 1 A GLN 203 A GLN 203 1 Y 1 A ALA 204 A ALA 204 1 Y 1 A ASP 205 A ASP 205 1 Y 1 A GLY 206 A GLY 206 1 Y 1 A SER 207 A SER 207 1 Y 1 A ALA 17 -85.38 39.05 1 A VAL 84 -126.91 -54.32 1 A LEU 118 -123.66 -53.09 1 A CYS 144 -94.38 -148.12 1 A THR 154 81.38 -10.92 23.612 0.59 0.00 -0.00 0.59 0.00 -1.17 0.963 0.958 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.20066 0.18234 0.18326 1.70 32.01 1420 26769 5.0 98.73 1.829 0.062 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.104 0.096 0.80 0.80 1.20 3CXR MAXIMUM LIKELIHOOD MASK 1.70 32.01 96 2024 0 0 1928 0.006 0.019 1967 0.001 0.020 1916 1.102 1.962 2662 0.726 3.000 4403 5.547 5.000 257 33.880 25.060 83 13.251 15.000 331 13.230 15.000 9 0.066 0.200 303 0.004 0.021 2263 0.001 0.020 430 0.911 2.217 1028 0.909 2.215 1027 1.521 3.313 1282 1.520 3.315 1283 1.277 2.493 939 1.277 2.495 940 2.117 3.666 1380 3.368 18.137 2252 3.322 18.055 2226 0.233 0.205 1.744 97 1938 20 98.36 1.70 50.00 4Z9X 28162 0.067 1 58.0 12.0 99.8 0.460 1.70 1.76 5.1 1 9.2 98.8 refinement REFMAC 5.7.0032 data scaling HKL-2000 data reduction SCALEPACK phasing MOLREP Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Streptococcus pyogenes 1 N N 2 N N A TYR 19 A TYR 19 HELX_P A ALA 32 A ALA 32 1 AA1 14 A LYS 42 A LYS 42 HELX_P A LEU 56 A LEU 56 1 AA2 15 A ASP 69 A ASP 69 HELX_P A VAL 84 A VAL 84 1 AA3 16 A PRO 101 A PRO 101 HELX_P A MET 105 A MET 105 5 AA4 5 A ALA 106 A ALA 106 HELX_P A LEU 118 A LEU 118 1 AA5 13 A LEU 118 A LEU 118 HELX_P A GLY 136 A GLY 136 1 AA6 19 A SER 145 A SER 145 HELX_P A GLU 149 A GLU 149 5 AA7 5 A VAL 155 A VAL 155 HELX_P A GLY 177 A GLY 177 1 AA8 23 A THR 193 A THR 193 HELX_P A GLU 201 A GLU 201 5 AA9 9 A HIS 209 A HIS 209 HELX_P A THR 219 A THR 219 1 AB1 11 A THR 227 A THR 227 HELX_P A SER 239 A SER 239 1 AB2 13 A ASP 240 A ASP 240 HELX_P A ASN 243 A ASN 243 5 AB3 4 A GLY 255 A GLY 255 HELX_P A TYR 259 A TYR 259 5 AB4 5 OXIDOREDUCTASE Glycosaminoglycan metabolism, Short-chain dehydrogenase/reductase, Rossmann fold, NADH specificity, OXIDOREDUCTASE Q9A0T1_STRP1 UNP 1 1 Q9A0T1 MENMFSLQGKIALITGASYGIGFEIAKAYAQAGATIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTDEAGIQQMVSQI EDEVGAIDILVNNAGIIRRTPMLEMAAEDFRQVIDIDLNAPFIVSKAVLPSMIAKGHGKIINICSMMSELGRETVSAYAA AKGGLKMLTKNIASEFGEANIQCNGIGPGYIATPQTAPLRERQADGSRHPFDQFIIAKTPAARWGTTEDLAGPAVFLASD ASNFVNGHILYVDGGILAYIGKQP 1 264 4Z9X 1 264 Q9A0T1 A 1 1 264 7 parallel parallel parallel parallel parallel parallel A HIS 61 A HIS 61 A VAL 64 A VAL 64 A THR 35 A THR 35 A ASP 40 A ASP 40 A ILE 11 A ILE 11 A THR 15 A THR 15 A ILE 89 A ILE 89 A ASN 92 A ASN 92 A GLY 138 A GLY 138 A ILE 143 A ILE 143 A ILE 181 A ILE 181 A PRO 188 A PRO 188 A ILE 249 A ILE 249 A VAL 252 A VAL 252 94 P 42 21 2