0.013333
0.007698
0.000000
-0.000000
0.015396
0.000000
0.000000
-0.000000
0.013352
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
Partnership for Nuclear Receptor Signaling Code Biology (NHRS)
Partnership for T-Cell Biology (TCELL)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
75.002
75.002
74.897
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a DJ-1 (PARK7) from Homo sapiens at 1.23 A resolution
10.2210/pdb4zgg/pdb
pdb_00004zgg
100
1
Vertical focusing mirror; double crystal Si(111) monochromator
CCD
2014-12-06
MARMOSAIC 325 mm CCD
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL14-1
SSRL
SYNCHROTRON
SSRL BEAMLINE BL14-1
20208.576
Protein deglycase DJ-1
3.1.2.-,3.5.1.-
1
man
polymer
62.068
1,2-ETHANEDIOL
10
syn
non-polymer
18.015
water
198
nat
water
DJ-1,Oncogene DJ1,Parkinson disease protein 7
no
yes
G(MSE)ASKRALVILAKGAEE(MSE)ETVIPVDV(MSE)RRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPY
DVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDK(MSE)(MSE)NGGHY
TYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKD
GMASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGA
QNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPG
TSFEFALAIVEALNGKEVAAQVKAPLVLKD
A
JCSG-399795
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
190
PARK7
9606
Homo sapiens
562
Escherichia Coli
PB1
Plasmid
Biological sequence
SpeedET
1
3.01
59.13
VAPOR DIFFUSION, SITTING DROP
8.0
5.00% polyethylene glycol 6000, 0.1M TRIS pH 8.0
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for Nuclear Receptor Signaling Code Biology
NHRs
PSI:Biology
Partnership for T-Cell Biology
TCELL
PSI:Biology
audit_author
entity_src_gen
pdbx_struct_oper_list
software
database_2
diffrn_radiation_wavelength
struct_ref_seq_dif
repository
Initial release
Database references
Structure summary
Derived calculations
Refinement description
Source and taxonomy
Structure summary
Data collection
Database references
1
0
2015-05-20
1
1
2015-05-27
1
2
2017-11-22
1
3
2023-02-01
_audit_author.name
_entity_src_gen.pdbx_alt_source_flag
_pdbx_struct_oper_list.symmetry_operation
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_radiation_wavelength.wavelength
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2015-04-22
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
EDO
201
2
EDO
EDO
201
A
EDO
202
2
EDO
EDO
202
A
EDO
203
2
EDO
EDO
203
A
EDO
204
2
EDO
EDO
204
A
EDO
205
2
EDO
EDO
205
A
EDO
206
2
EDO
EDO
206
A
EDO
207
2
EDO
EDO
207
A
EDO
208
2
EDO
EDO
208
A
EDO
209
2
EDO
EDO
209
A
EDO
210
2
EDO
EDO
210
A
HOH
356
3
HOH
HOH
301
A
HOH
307
3
HOH
HOH
302
A
HOH
325
3
HOH
HOH
303
A
HOH
378
3
HOH
HOH
304
A
HOH
306
3
HOH
HOH
305
A
HOH
403
3
HOH
HOH
306
A
HOH
301
3
HOH
HOH
307
A
HOH
322
3
HOH
HOH
308
A
HOH
299
3
HOH
HOH
309
A
HOH
292
3
HOH
HOH
310
A
HOH
336
3
HOH
HOH
311
A
HOH
347
3
HOH
HOH
312
A
HOH
339
3
HOH
HOH
313
A
HOH
349
3
HOH
HOH
314
A
HOH
311
3
HOH
HOH
315
A
HOH
274
3
HOH
HOH
316
A
HOH
345
3
HOH
HOH
317
A
HOH
376
3
HOH
HOH
318
A
HOH
298
3
HOH
HOH
319
A
HOH
399
3
HOH
HOH
320
A
HOH
377
3
HOH
HOH
321
A
HOH
312
3
HOH
HOH
322
A
HOH
357
3
HOH
HOH
323
A
HOH
290
3
HOH
HOH
324
A
HOH
343
3
HOH
HOH
325
A
HOH
327
3
HOH
HOH
326
A
HOH
346
3
HOH
HOH
327
A
HOH
246
3
HOH
HOH
328
A
HOH
261
3
HOH
HOH
329
A
HOH
271
3
HOH
HOH
330
A
HOH
317
3
HOH
HOH
331
A
HOH
344
3
HOH
HOH
332
A
HOH
321
3
HOH
HOH
333
A
HOH
251
3
HOH
HOH
334
A
HOH
333
3
HOH
HOH
335
A
HOH
279
3
HOH
HOH
336
A
HOH
304
3
HOH
HOH
337
A
HOH
379
3
HOH
HOH
338
A
HOH
391
3
HOH
HOH
339
A
HOH
268
3
HOH
HOH
340
A
HOH
278
3
HOH
HOH
341
A
HOH
328
3
HOH
HOH
342
A
HOH
297
3
HOH
HOH
343
A
HOH
375
3
HOH
HOH
344
A
HOH
404
3
HOH
HOH
345
A
HOH
364
3
HOH
HOH
346
A
HOH
280
3
HOH
HOH
347
A
HOH
227
3
HOH
HOH
348
A
HOH
276
3
HOH
HOH
349
A
HOH
215
3
HOH
HOH
350
A
HOH
228
3
HOH
HOH
351
A
HOH
362
3
HOH
HOH
352
A
HOH
313
3
HOH
HOH
353
A
HOH
316
3
HOH
HOH
354
A
HOH
260
3
HOH
HOH
355
A
HOH
286
3
HOH
HOH
356
A
HOH
320
3
HOH
HOH
357
A
HOH
334
3
HOH
HOH
358
A
HOH
235
3
HOH
HOH
359
A
HOH
397
3
HOH
HOH
360
A
HOH
249
3
HOH
HOH
361
A
HOH
232
3
HOH
HOH
362
A
HOH
245
3
HOH
HOH
363
A
HOH
256
3
HOH
HOH
364
A
HOH
387
3
HOH
HOH
365
A
HOH
237
3
HOH
HOH
366
A
HOH
221
3
HOH
HOH
367
A
HOH
374
3
HOH
HOH
368
A
HOH
236
3
HOH
HOH
369
A
HOH
219
3
HOH
HOH
370
A
HOH
314
3
HOH
HOH
371
A
HOH
359
3
HOH
HOH
372
A
HOH
383
3
HOH
HOH
373
A
HOH
211
3
HOH
HOH
374
A
HOH
242
3
HOH
HOH
375
A
HOH
254
3
HOH
HOH
376
A
HOH
264
3
HOH
HOH
377
A
HOH
395
3
HOH
HOH
378
A
HOH
230
3
HOH
HOH
379
A
HOH
277
3
HOH
HOH
380
A
HOH
270
3
HOH
HOH
381
A
HOH
240
3
HOH
HOH
382
A
HOH
218
3
HOH
HOH
383
A
HOH
220
3
HOH
HOH
384
A
HOH
222
3
HOH
HOH
385
A
HOH
224
3
HOH
HOH
386
A
HOH
217
3
HOH
HOH
387
A
HOH
305
3
HOH
HOH
388
A
HOH
352
3
HOH
HOH
389
A
HOH
296
3
HOH
HOH
390
A
HOH
248
3
HOH
HOH
391
A
HOH
267
3
HOH
HOH
392
A
HOH
255
3
HOH
HOH
393
A
HOH
272
3
HOH
HOH
394
A
HOH
225
3
HOH
HOH
395
A
HOH
216
3
HOH
HOH
396
A
HOH
247
3
HOH
HOH
397
A
HOH
361
3
HOH
HOH
398
A
HOH
212
3
HOH
HOH
399
A
HOH
287
3
HOH
HOH
400
A
HOH
337
3
HOH
HOH
401
A
HOH
265
3
HOH
HOH
402
A
HOH
368
3
HOH
HOH
403
A
HOH
402
3
HOH
HOH
404
A
HOH
259
3
HOH
HOH
405
A
HOH
241
3
HOH
HOH
406
A
HOH
283
3
HOH
HOH
407
A
HOH
226
3
HOH
HOH
408
A
HOH
213
3
HOH
HOH
409
A
HOH
262
3
HOH
HOH
410
A
HOH
229
3
HOH
HOH
411
A
HOH
257
3
HOH
HOH
412
A
HOH
293
3
HOH
HOH
413
A
HOH
214
3
HOH
HOH
414
A
HOH
365
3
HOH
HOH
415
A
HOH
284
3
HOH
HOH
416
A
HOH
243
3
HOH
HOH
417
A
HOH
233
3
HOH
HOH
418
A
HOH
269
3
HOH
HOH
419
A
HOH
382
3
HOH
HOH
420
A
HOH
275
3
HOH
HOH
421
A
HOH
324
3
HOH
HOH
422
A
HOH
300
3
HOH
HOH
423
A
HOH
234
3
HOH
HOH
424
A
HOH
289
3
HOH
HOH
425
A
HOH
363
3
HOH
HOH
426
A
HOH
250
3
HOH
HOH
427
A
HOH
266
3
HOH
HOH
428
A
HOH
263
3
HOH
HOH
429
A
HOH
238
3
HOH
HOH
430
A
HOH
294
3
HOH
HOH
431
A
HOH
332
3
HOH
HOH
432
A
HOH
273
3
HOH
HOH
433
A
HOH
231
3
HOH
HOH
434
A
HOH
303
3
HOH
HOH
435
A
HOH
281
3
HOH
HOH
436
A
HOH
408
3
HOH
HOH
437
A
HOH
389
3
HOH
HOH
438
A
HOH
282
3
HOH
HOH
439
A
HOH
285
3
HOH
HOH
440
A
HOH
350
3
HOH
HOH
441
A
HOH
353
3
HOH
HOH
442
A
HOH
291
3
HOH
HOH
443
A
HOH
330
3
HOH
HOH
444
A
HOH
253
3
HOH
HOH
445
A
HOH
288
3
HOH
HOH
446
A
HOH
252
3
HOH
HOH
447
A
HOH
338
3
HOH
HOH
448
A
HOH
244
3
HOH
HOH
449
A
HOH
329
3
HOH
HOH
450
A
HOH
335
3
HOH
HOH
451
A
HOH
239
3
HOH
HOH
452
A
HOH
318
3
HOH
HOH
453
A
HOH
295
3
HOH
HOH
454
A
HOH
360
3
HOH
HOH
455
A
HOH
386
3
HOH
HOH
456
A
HOH
258
3
HOH
HOH
457
A
HOH
406
3
HOH
HOH
458
A
HOH
341
3
HOH
HOH
459
A
HOH
348
3
HOH
HOH
460
A
HOH
223
3
HOH
HOH
461
A
HOH
393
3
HOH
HOH
462
A
HOH
385
3
HOH
HOH
463
A
HOH
384
3
HOH
HOH
464
A
HOH
358
3
HOH
HOH
465
A
HOH
354
3
HOH
HOH
466
A
HOH
366
3
HOH
HOH
467
A
HOH
405
3
HOH
HOH
468
A
HOH
351
3
HOH
HOH
469
A
HOH
371
3
HOH
HOH
470
A
HOH
309
3
HOH
HOH
471
A
HOH
398
3
HOH
HOH
472
A
HOH
340
3
HOH
HOH
473
A
HOH
302
3
HOH
HOH
474
A
HOH
394
3
HOH
HOH
475
A
HOH
367
3
HOH
HOH
476
A
HOH
381
3
HOH
HOH
477
A
HOH
407
3
HOH
HOH
478
A
HOH
331
3
HOH
HOH
479
A
HOH
372
3
HOH
HOH
480
A
HOH
319
3
HOH
HOH
481
A
HOH
392
3
HOH
HOH
482
A
HOH
369
3
HOH
HOH
483
A
HOH
323
3
HOH
HOH
484
A
HOH
326
3
HOH
HOH
485
A
HOH
315
3
HOH
HOH
486
A
HOH
355
3
HOH
HOH
487
A
HOH
388
3
HOH
HOH
488
A
HOH
342
3
HOH
HOH
489
A
HOH
401
3
HOH
HOH
490
A
HOH
380
3
HOH
HOH
491
A
HOH
396
3
HOH
HOH
492
A
HOH
400
3
HOH
HOH
493
A
HOH
310
3
HOH
HOH
494
A
HOH
370
3
HOH
HOH
495
A
HOH
390
3
HOH
HOH
496
A
HOH
308
3
HOH
HOH
497
A
HOH
373
3
HOH
HOH
498
A
GLY
0
n
1
GLY
0
A
MSE
1
n
2
MSE
1
A
ALA
2
n
3
ALA
2
A
SER
3
n
4
SER
3
A
LYS
4
n
5
LYS
4
A
ARG
5
n
6
ARG
5
A
ALA
6
n
7
ALA
6
A
LEU
7
n
8
LEU
7
A
VAL
8
n
9
VAL
8
A
ILE
9
n
10
ILE
9
A
LEU
10
n
11
LEU
10
A
ALA
11
n
12
ALA
11
A
LYS
12
n
13
LYS
12
A
GLY
13
n
14
GLY
13
A
ALA
14
n
15
ALA
14
A
GLU
15
n
16
GLU
15
A
GLU
16
n
17
GLU
16
A
MSE
17
n
18
MSE
17
A
GLU
18
n
19
GLU
18
A
THR
19
n
20
THR
19
A
VAL
20
n
21
VAL
20
A
ILE
21
n
22
ILE
21
A
PRO
22
n
23
PRO
22
A
VAL
23
n
24
VAL
23
A
ASP
24
n
25
ASP
24
A
VAL
25
n
26
VAL
25
A
MSE
26
n
27
MSE
26
A
ARG
27
n
28
ARG
27
A
ARG
28
n
29
ARG
28
A
ALA
29
n
30
ALA
29
A
GLY
30
n
31
GLY
30
A
ILE
31
n
32
ILE
31
A
LYS
32
n
33
LYS
32
A
VAL
33
n
34
VAL
33
A
THR
34
n
35
THR
34
A
VAL
35
n
36
VAL
35
A
ALA
36
n
37
ALA
36
A
GLY
37
n
38
GLY
37
A
LEU
38
n
39
LEU
38
A
ALA
39
n
40
ALA
39
A
GLY
40
n
41
GLY
40
A
LYS
41
n
42
LYS
41
A
ASP
42
n
43
ASP
42
A
PRO
43
n
44
PRO
43
A
VAL
44
n
45
VAL
44
A
GLN
45
n
46
GLN
45
A
CYS
46
n
47
CYS
46
A
SER
47
n
48
SER
47
A
ARG
48
n
49
ARG
48
A
ASP
49
n
50
ASP
49
A
VAL
50
n
51
VAL
50
A
VAL
51
n
52
VAL
51
A
ILE
52
n
53
ILE
52
A
CYS
53
n
54
CYS
53
A
PRO
54
n
55
PRO
54
A
ASP
55
n
56
ASP
55
A
ALA
56
n
57
ALA
56
A
SER
57
n
58
SER
57
A
LEU
58
n
59
LEU
58
A
GLU
59
n
60
GLU
59
A
ASP
60
n
61
ASP
60
A
ALA
61
n
62
ALA
61
A
LYS
62
n
63
LYS
62
A
LYS
63
n
64
LYS
63
A
GLU
64
n
65
GLU
64
A
GLY
65
n
66
GLY
65
A
PRO
66
n
67
PRO
66
A
TYR
67
n
68
TYR
67
A
ASP
68
n
69
ASP
68
A
VAL
69
n
70
VAL
69
A
VAL
70
n
71
VAL
70
A
VAL
71
n
72
VAL
71
A
LEU
72
n
73
LEU
72
A
PRO
73
n
74
PRO
73
A
GLY
74
n
75
GLY
74
A
GLY
75
n
76
GLY
75
A
ASN
76
n
77
ASN
76
A
LEU
77
n
78
LEU
77
A
GLY
78
n
79
GLY
78
A
ALA
79
n
80
ALA
79
A
GLN
80
n
81
GLN
80
A
ASN
81
n
82
ASN
81
A
LEU
82
n
83
LEU
82
A
SER
83
n
84
SER
83
A
GLU
84
n
85
GLU
84
A
SER
85
n
86
SER
85
A
ALA
86
n
87
ALA
86
A
ALA
87
n
88
ALA
87
A
VAL
88
n
89
VAL
88
A
LYS
89
n
90
LYS
89
A
GLU
90
n
91
GLU
90
A
ILE
91
n
92
ILE
91
A
LEU
92
n
93
LEU
92
A
LYS
93
n
94
LYS
93
A
GLU
94
n
95
GLU
94
A
GLN
95
n
96
GLN
95
A
GLU
96
n
97
GLU
96
A
ASN
97
n
98
ASN
97
A
ARG
98
n
99
ARG
98
A
LYS
99
n
100
LYS
99
A
GLY
100
n
101
GLY
100
A
LEU
101
n
102
LEU
101
A
ILE
102
n
103
ILE
102
A
ALA
103
n
104
ALA
103
A
ALA
104
n
105
ALA
104
A
ILE
105
n
106
ILE
105
A
CYS
106
n
107
CYS
106
A
ALA
107
n
108
ALA
107
A
GLY
108
n
109
GLY
108
A
PRO
109
n
110
PRO
109
A
THR
110
n
111
THR
110
A
ALA
111
n
112
ALA
111
A
LEU
112
n
113
LEU
112
A
LEU
113
n
114
LEU
113
A
ALA
114
n
115
ALA
114
A
HIS
115
n
116
HIS
115
A
GLU
116
n
117
GLU
116
A
ILE
117
n
118
ILE
117
A
GLY
118
n
119
GLY
118
A
PHE
119
n
120
PHE
119
A
GLY
120
n
121
GLY
120
A
SER
121
n
122
SER
121
A
LYS
122
n
123
LYS
122
A
VAL
123
n
124
VAL
123
A
THR
124
n
125
THR
124
A
THR
125
n
126
THR
125
A
HIS
126
n
127
HIS
126
A
PRO
127
n
128
PRO
127
A
LEU
128
n
129
LEU
128
A
ALA
129
n
130
ALA
129
A
LYS
130
n
131
LYS
130
A
ASP
131
n
132
ASP
131
A
LYS
132
n
133
LYS
132
A
MSE
133
n
134
MSE
133
A
MSE
134
n
135
MSE
134
A
ASN
135
n
136
ASN
135
A
GLY
136
n
137
GLY
136
A
GLY
137
n
138
GLY
137
A
HIS
138
n
139
HIS
138
A
TYR
139
n
140
TYR
139
A
THR
140
n
141
THR
140
A
TYR
141
n
142
TYR
141
A
SER
142
n
143
SER
142
A
GLU
143
n
144
GLU
143
A
ASN
144
n
145
ASN
144
A
ARG
145
n
146
ARG
145
A
VAL
146
n
147
VAL
146
A
GLU
147
n
148
GLU
147
A
LYS
148
n
149
LYS
148
A
ASP
149
n
150
ASP
149
A
GLY
150
n
151
GLY
150
A
LEU
151
n
152
LEU
151
A
ILE
152
n
153
ILE
152
A
LEU
153
n
154
LEU
153
A
THR
154
n
155
THR
154
A
SER
155
n
156
SER
155
A
ARG
156
n
157
ARG
156
A
GLY
157
n
158
GLY
157
A
PRO
158
n
159
PRO
158
A
GLY
159
n
160
GLY
159
A
THR
160
n
161
THR
160
A
SER
161
n
162
SER
161
A
PHE
162
n
163
PHE
162
A
GLU
163
n
164
GLU
163
A
PHE
164
n
165
PHE
164
A
ALA
165
n
166
ALA
165
A
LEU
166
n
167
LEU
166
A
ALA
167
n
168
ALA
167
A
ILE
168
n
169
ILE
168
A
VAL
169
n
170
VAL
169
A
GLU
170
n
171
GLU
170
A
ALA
171
n
172
ALA
171
A
LEU
172
n
173
LEU
172
A
ASN
173
n
174
ASN
173
A
GLY
174
n
175
GLY
174
A
LYS
175
n
176
LYS
175
A
GLU
176
n
177
GLU
176
A
VAL
177
n
178
VAL
177
A
ALA
178
n
179
ALA
178
A
ALA
179
n
180
ALA
179
A
GLN
180
n
181
GLN
180
A
VAL
181
n
182
VAL
181
A
LYS
182
n
183
LYS
182
A
ALA
183
n
184
ALA
183
A
PRO
184
n
185
PRO
184
A
LEU
185
n
186
LEU
185
A
VAL
186
n
187
VAL
186
A
LEU
187
n
188
LEU
187
A
LYS
188
n
189
LYS
188
A
ASP
189
n
190
ASP
189
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
6200
30
15820
A
MSE
1
modified residue
A
MSE
2
MET
A
MSE
17
modified residue
A
MSE
18
MET
A
MSE
26
modified residue
A
MSE
27
MET
A
MSE
133
modified residue
A
MSE
134
MET
A
MSE
134
modified residue
A
MSE
135
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
56
A
O
ALA
57
A
N
GLY
37
A
N
GLY
38
A
O
ALA
36
A
O
ALA
37
A
N
VAL
8
A
N
VAL
9
A
N
LEU
7
A
N
LEU
8
A
O
VAL
71
A
O
VAL
72
A
N
VAL
70
A
N
VAL
71
A
O
ALA
103
A
O
ALA
104
A
N
ILE
102
A
N
ILE
103
A
O
LEU
153
A
O
LEU
154
A
O
THR
154
A
O
THR
155
A
N
GLU
147
A
N
GLU
148
A
N
VAL
44
A
N
VAL
45
A
O
ILE
52
A
O
ILE
53
A
N
VAL
123
A
N
VAL
124
A
O
THR
140
A
O
THR
141
1
A
A
CD
OE2
GLU
GLU
59
59
-0.106
0.011
1.252
1.146
N
1
A
CYS
106
76.74
-102.14
103.570
17.4434
7.020
0.2000
0.1000
0.0000
0.2000
-0.0000
-0.6400
0.9820
0.9760
1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE SAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 3. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 4. EDO MODELED WAS PRESENT IN CRYO CONDITION.
0.1339
0.1164
0.1172
1.2300
29.796
3374
66326
69700
4.8000
98.2300
1.000
0.200
0.9310
0.0170
RANDOM
1
THROUGHOUT
0.000
SAD
0.0270
0.0270
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD WITH PHASES
MASK
1.2300
29.796
198
1634
40
0
1396
0.016
0.022
1557
0.003
0.020
1631
1.697
2.009
2100
1.091
3.000
3785
6.157
5.000
219
36.157
25.455
55
11.474
15.000
298
19.353
15.000
8
0.104
0.200
246
0.009
0.021
1745
0.004
0.020
297
2.064
2.409
801
1.992
2.402
800
2.034
4.542
1009
2.717
3.000
3187
30.129
5.000
129
8.773
5.000
3237
0.2930
0.2870
1.2620
192
4272
4464
20
85.7100
1.23
29.796
4ZGG
69760
69760
0.046
0.124
0.115
1
3.912
8.100
479140
6.900
98.300
0.913
0.804
1.230
1.260
0.9
18482
4473
0.422
0.913
0.804
1
1.700
4.100
86.100
0.755
0.679
1.260
1.300
1.1
23343
4608
0.324
0.755
0.679
2.200
5.100
91.600
0.626
0.577
1.300
1.330
1.3
31740
4860
0.242
0.626
0.577
2.900
6.500
99.000
0.530
0.491
1.330
1.380
1.5
34280
4797
0.197
0.530
0.491
3.500
7.100
100.000
0.447
0.415
1.380
1.420
1.8
33558
4672
0.166
0.447
0.415
4.100
7.200
100.000
0.365
0.338
1.420
1.470
2.2
32593
4516
0.135
0.365
0.338
4.800
7.200
100.000
0.298
0.277
1.470
1.530
2.7
31376
4334
0.110
0.298
0.277
5.600
7.200
100.000
0.258
0.240
1.530
1.590
3.1
30085
4141
0.096
0.258
0.240
6.400
7.300
100.000
0.223
0.207
1.590
1.660
3.5
29636
4063
0.082
0.223
0.207
7.400
7.300
100.000
0.192
0.178
1.660
1.740
4.0
28022
3832
0.070
0.192
0.178
8.300
7.300
100.000
0.169
0.157
1.740
1.830
4.4
26857
3662
0.062
0.169
0.157
9.600
7.300
100.000
0.148
0.138
1.830
1.940
4.9
25467
3474
0.055
0.148
0.138
11.000
7.300
100.000
0.138
0.128
1.940
2.080
5.1
24154
3284
0.050
0.138
0.128
12.800
7.400
100.000
0.123
0.114
2.080
2.250
5.7
22272
3027
0.045
0.123
0.114
14.400
7.400
100.000
0.110
0.102
2.250
2.460
6.5
20971
2841
0.040
0.110
0.102
15.500
7.400
100.000
0.109
0.101
2.460
2.750
6.4
18726
2544
0.040
0.109
0.101
16.300
7.400
100.000
0.107
0.100
2.750
3.180
6.5
16614
2269
0.039
0.107
0.100
17.300
7.300
100.000
0.081
0.075
3.180
3.890
8.4
14218
1950
0.030
0.081
0.075
18.900
7.300
100.000
0.073
0.068
3.890
5.500
9.3
10929
1528
0.027
0.073
0.068
19.200
7.200
100.000
0.087
0.080
5.500
29.796
8.2
5817
885
0.033
0.087
0.080
17.100
6.600
98.900
data extraction
PDB_EXTRACT
3.10
phasing
SOLVE
data scaling
SCALA
3.3.20
refinement
REFMAC
5.8.0103
data reduction
MOSFLM
Crystal structure of a DJ-1 (PARK7) from Homo sapiens at 1.23 A resolution
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
GLU
15
A
GLU
16
HELX_P
A
ALA
29
A
ALA
30
1
AA1
15
A
LEU
58
A
LEU
59
HELX_P
A
LYS
62
A
LYS
63
1
AA2
5
A
LYS
63
A
LYS
64
HELX_P
A
GLY
65
A
GLY
66
5
AA3
3
A
GLY
75
A
GLY
76
HELX_P
A
SER
85
A
SER
86
1
AA4
11
A
SER
85
A
SER
86
HELX_P
A
ARG
98
A
ARG
99
1
AA5
14
A
PRO
109
A
PRO
110
HELX_P
A
HIS
115
A
HIS
116
1
AA6
7
A
HIS
126
A
HIS
127
HELX_P
A
LEU
128
A
LEU
129
5
AA7
3
A
ALA
129
A
ALA
130
HELX_P
A
MSE
134
A
MSE
135
1
AA8
6
A
GLY
157
A
GLY
158
HELX_P
A
GLY
159
A
GLY
160
5
AA9
3
A
THR
160
A
THR
161
HELX_P
A
GLY
174
A
GLY
175
1
AB1
15
A
GLY
174
A
GLY
175
HELX_P
A
ALA
183
A
ALA
184
1
AB2
10
A
PRO
184
A
PRO
185
HELX_P
A
VAL
186
A
VAL
187
5
AB3
3
covale
1.343
both
A
GLY
0
A
C
GLY
1
1_555
A
MSE
1
A
N
MSE
2
1_555
covale
1.334
both
A
A
MSE
1
A
C
MSE
2
1_555
A
ALA
2
A
N
ALA
3
1_555
covale
1.335
both
B
A
MSE
1
A
C
MSE
2
1_555
A
ALA
2
A
N
ALA
3
1_555
covale
1.324
both
A
GLU
16
A
C
GLU
17
1_555
A
MSE
17
A
N
MSE
18
1_555
covale
1.327
both
A
MSE
17
A
C
MSE
18
1_555
A
GLU
18
A
N
GLU
19
1_555
covale
1.335
both
A
VAL
25
A
C
VAL
26
1_555
A
MSE
26
A
N
MSE
27
1_555
covale
1.323
both
A
MSE
26
A
C
MSE
27
1_555
A
ARG
27
A
N
ARG
28
1_555
covale
1.328
both
A
LYS
132
A
C
LYS
133
1_555
A
MSE
133
A
N
MSE
134
1_555
covale
1.335
both
A
MSE
133
A
C
MSE
134
1_555
A
MSE
134
A
N
MSE
135
1_555
covale
1.334
both
A
MSE
134
A
C
MSE
135
1_555
A
ASN
135
A
N
ASN
136
1_555
CHAPERONE
Parkinson disease, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, Partnership for Nuclear Receptor Signaling Code Biology, NHRs, Partnership for T-Cell Biology, TCELL, PSI-BIOLOGY, CHAPERONE
A
GLY
65
A
GLY
66
1
A
PRO
66
A
PRO
67
4.06
PARK7_HUMAN
UNP
1
1
Q99497
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ
NLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGT
SFEFALAIVEALNGKEVAAQVKAPLVLKD
1
189
4ZGG
1
189
Q99497
A
1
2
190
1
expression tag
GLY
0
4ZGG
A
Q99497
UNP
1
7
2
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
A
ALA
56
A
ALA
57
A
SER
57
A
SER
58
A
LYS
32
A
LYS
33
A
GLY
37
A
GLY
38
A
ARG
5
A
ARG
6
A
LEU
10
A
LEU
11
A
VAL
69
A
VAL
70
A
LEU
72
A
LEU
73
A
LEU
101
A
LEU
102
A
ILE
105
A
ILE
106
A
ILE
152
A
ILE
153
A
SER
155
A
SER
156
A
VAL
146
A
VAL
147
A
ASP
149
A
ASP
150
A
VAL
44
A
VAL
45
A
GLN
45
A
GLN
46
A
VAL
51
A
VAL
52
A
ILE
52
A
ILE
53
A
LYS
122
A
LYS
123
A
VAL
123
A
VAL
124
A
THR
140
A
THR
141
A
TYR
141
A
TYR
142
binding site for residue EDO A 201
A
EDO
201
Software
7
binding site for residue EDO A 202
A
EDO
202
Software
3
binding site for residue EDO A 203
A
EDO
203
Software
6
binding site for residue EDO A 204
A
EDO
204
Software
6
binding site for residue EDO A 205
A
EDO
205
Software
4
binding site for residue EDO A 206
A
EDO
206
Software
4
binding site for residue EDO A 207
A
EDO
207
Software
6
binding site for residue EDO A 208
A
EDO
208
Software
3
binding site for residue EDO A 209
A
EDO
209
Software
3
binding site for residue EDO A 210
A
EDO
210
Software
4
A
LYS
12
A
LYS
13
7
1_555
A
GLN
45
A
GLN
46
7
1_555
A
LYS
122
A
LYS
123
7
3_664
A
GLU
147
A
GLU
148
7
3_664
A
LYS
148
A
LYS
149
7
3_664
A
ASP
149
A
ASP
150
7
3_664
A
HOH
316
L
HOH
7
3_664
A
ASN
76
A
ASN
77
3
1_555
A
HOH
382
L
HOH
3
3_664
A
HOH
497
L
HOH
3
3_664
A
ARG
28
A
ARG
29
6
4_555
A
HIS
126
A
HIS
127
6
1_555
A
PRO
158
A
PRO
159
6
1_555
A
PRO
184
A
PRO
185
6
4_555
A
HOH
313
L
HOH
6
1_555
A
HOH
382
L
HOH
6
3_664
A
PRO
66
A
PRO
67
6
1_555
A
TYR
67
A
TYR
68
6
1_555
A
GLU
94
A
GLU
95
6
1_555
A
GLN
95
A
GLN
96
6
1_555
A
HOH
311
L
HOH
6
1_555
A
HOH
314
L
HOH
6
1_555
A
GLN
80
A
GLN
81
4
1_555
A
ASN
81
A
ASN
82
4
1_555
A
GLU
84
A
GLU
85
4
1_555
A
LYS
99
A
LYS
100
4
3_664
A
GLN
80
A
GLN
81
4
1_555
A
GLU
96
A
GLU
97
4
3_664
A
LYS
132
A
LYS
133
4
1_555
A
HOH
490
L
HOH
4
3_664
A
LYS
175
A
LYS
176
6
1_555
A
ALA
178
A
ALA
179
6
1_555
A
ALA
179
A
ALA
180
6
1_555
A
HOH
312
L
HOH
6
1_555
A
HOH
335
L
HOH
6
1_555
A
HOH
479
L
HOH
6
1_555
A
LYS
175
A
LYS
176
3
1_555
A
GLU
176
A
GLU
177
3
1_555
A
ALA
179
A
ALA
180
3
1_555
A
CYS
53
A
CYS
54
3
1_555
A
PRO
54
A
PRO
55
3
1_555
A
ASP
55
A
ASP
56
3
1_555
A
VAL
33
A
VAL
34
4
1_555
A
THR
34
A
THR
35
4
1_555
A
HOH
360
L
HOH
4
1_555
A
HOH
378
L
HOH
4
1_555
152
P 31 2 1