0.013333 0.007698 0.000000 -0.000000 0.015396 0.000000 0.000000 -0.000000 0.013352 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) Partnership for Nuclear Receptor Signaling Code Biology (NHRS) Partnership for T-Cell Biology (TCELL) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 75.002 75.002 74.897 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a DJ-1 (PARK7) from Homo sapiens at 1.23 A resolution 10.2210/pdb4zgg/pdb pdb_00004zgg 100 1 Vertical focusing mirror; double crystal Si(111) monochromator CCD 2014-12-06 MARMOSAIC 325 mm CCD double crystal Si(111) SINGLE WAVELENGTH M x-ray 1 1.0 BL14-1 SSRL SYNCHROTRON SSRL BEAMLINE BL14-1 20208.576 Protein deglycase DJ-1 3.1.2.-,3.5.1.- 1 man polymer 62.068 1,2-ETHANEDIOL 10 syn non-polymer 18.015 water 198 nat water DJ-1,Oncogene DJ1,Parkinson disease protein 7 no yes G(MSE)ASKRALVILAKGAEE(MSE)ETVIPVDV(MSE)RRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPY DVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDK(MSE)(MSE)NGGHY TYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKD GMASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGA QNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPG TSFEFALAIVEALNGKEVAAQVKAPLVLKD A JCSG-399795 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 190 PARK7 9606 Homo sapiens 562 Escherichia Coli PB1 Plasmid Biological sequence SpeedET 1 3.01 59.13 VAPOR DIFFUSION, SITTING DROP 8.0 5.00% polyethylene glycol 6000, 0.1M TRIS pH 8.0 277 Joint Center for Structural Genomics JCSG PSI:Biology Partnership for Nuclear Receptor Signaling Code Biology NHRs PSI:Biology Partnership for T-Cell Biology TCELL PSI:Biology audit_author entity_src_gen pdbx_struct_oper_list software database_2 diffrn_radiation_wavelength struct_ref_seq_dif repository Initial release Database references Structure summary Derived calculations Refinement description Source and taxonomy Structure summary Data collection Database references 1 0 2015-05-20 1 1 2015-05-27 1 2 2017-11-22 1 3 2023-02-01 _audit_author.name _entity_src_gen.pdbx_alt_source_flag _pdbx_struct_oper_list.symmetry_operation _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_radiation_wavelength.wavelength _struct_ref_seq_dif.details Y RCSB Y RCSB 2015-04-22 REL REL EDO 1,2-ETHANEDIOL HOH water THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. EDO 201 2 EDO EDO 201 A EDO 202 2 EDO EDO 202 A EDO 203 2 EDO EDO 203 A EDO 204 2 EDO EDO 204 A EDO 205 2 EDO EDO 205 A EDO 206 2 EDO EDO 206 A EDO 207 2 EDO EDO 207 A EDO 208 2 EDO EDO 208 A EDO 209 2 EDO EDO 209 A EDO 210 2 EDO EDO 210 A HOH 356 3 HOH HOH 301 A HOH 307 3 HOH HOH 302 A HOH 325 3 HOH HOH 303 A HOH 378 3 HOH HOH 304 A HOH 306 3 HOH HOH 305 A HOH 403 3 HOH HOH 306 A HOH 301 3 HOH HOH 307 A HOH 322 3 HOH HOH 308 A HOH 299 3 HOH HOH 309 A HOH 292 3 HOH HOH 310 A HOH 336 3 HOH HOH 311 A HOH 347 3 HOH HOH 312 A HOH 339 3 HOH HOH 313 A HOH 349 3 HOH HOH 314 A HOH 311 3 HOH HOH 315 A HOH 274 3 HOH HOH 316 A HOH 345 3 HOH HOH 317 A HOH 376 3 HOH HOH 318 A HOH 298 3 HOH HOH 319 A HOH 399 3 HOH HOH 320 A HOH 377 3 HOH HOH 321 A HOH 312 3 HOH HOH 322 A HOH 357 3 HOH HOH 323 A HOH 290 3 HOH HOH 324 A HOH 343 3 HOH HOH 325 A HOH 327 3 HOH HOH 326 A HOH 346 3 HOH HOH 327 A HOH 246 3 HOH HOH 328 A HOH 261 3 HOH HOH 329 A HOH 271 3 HOH HOH 330 A HOH 317 3 HOH HOH 331 A HOH 344 3 HOH HOH 332 A HOH 321 3 HOH HOH 333 A HOH 251 3 HOH HOH 334 A HOH 333 3 HOH HOH 335 A HOH 279 3 HOH HOH 336 A HOH 304 3 HOH HOH 337 A HOH 379 3 HOH HOH 338 A HOH 391 3 HOH HOH 339 A HOH 268 3 HOH HOH 340 A HOH 278 3 HOH HOH 341 A HOH 328 3 HOH HOH 342 A HOH 297 3 HOH HOH 343 A HOH 375 3 HOH HOH 344 A HOH 404 3 HOH HOH 345 A HOH 364 3 HOH HOH 346 A HOH 280 3 HOH HOH 347 A HOH 227 3 HOH HOH 348 A HOH 276 3 HOH HOH 349 A HOH 215 3 HOH HOH 350 A HOH 228 3 HOH HOH 351 A HOH 362 3 HOH HOH 352 A HOH 313 3 HOH HOH 353 A HOH 316 3 HOH HOH 354 A HOH 260 3 HOH HOH 355 A HOH 286 3 HOH HOH 356 A HOH 320 3 HOH HOH 357 A HOH 334 3 HOH HOH 358 A HOH 235 3 HOH HOH 359 A HOH 397 3 HOH HOH 360 A HOH 249 3 HOH HOH 361 A HOH 232 3 HOH HOH 362 A HOH 245 3 HOH HOH 363 A HOH 256 3 HOH HOH 364 A HOH 387 3 HOH HOH 365 A HOH 237 3 HOH HOH 366 A HOH 221 3 HOH HOH 367 A HOH 374 3 HOH HOH 368 A HOH 236 3 HOH HOH 369 A HOH 219 3 HOH HOH 370 A HOH 314 3 HOH HOH 371 A HOH 359 3 HOH HOH 372 A HOH 383 3 HOH HOH 373 A HOH 211 3 HOH HOH 374 A HOH 242 3 HOH HOH 375 A HOH 254 3 HOH HOH 376 A HOH 264 3 HOH HOH 377 A HOH 395 3 HOH HOH 378 A HOH 230 3 HOH HOH 379 A HOH 277 3 HOH HOH 380 A HOH 270 3 HOH HOH 381 A HOH 240 3 HOH HOH 382 A HOH 218 3 HOH HOH 383 A HOH 220 3 HOH HOH 384 A HOH 222 3 HOH HOH 385 A HOH 224 3 HOH HOH 386 A HOH 217 3 HOH HOH 387 A HOH 305 3 HOH HOH 388 A HOH 352 3 HOH HOH 389 A HOH 296 3 HOH HOH 390 A HOH 248 3 HOH HOH 391 A HOH 267 3 HOH HOH 392 A HOH 255 3 HOH HOH 393 A HOH 272 3 HOH HOH 394 A HOH 225 3 HOH HOH 395 A HOH 216 3 HOH HOH 396 A HOH 247 3 HOH HOH 397 A HOH 361 3 HOH HOH 398 A HOH 212 3 HOH HOH 399 A HOH 287 3 HOH HOH 400 A HOH 337 3 HOH HOH 401 A HOH 265 3 HOH HOH 402 A HOH 368 3 HOH HOH 403 A HOH 402 3 HOH HOH 404 A HOH 259 3 HOH HOH 405 A HOH 241 3 HOH HOH 406 A HOH 283 3 HOH HOH 407 A HOH 226 3 HOH HOH 408 A HOH 213 3 HOH HOH 409 A HOH 262 3 HOH HOH 410 A HOH 229 3 HOH HOH 411 A HOH 257 3 HOH HOH 412 A HOH 293 3 HOH HOH 413 A HOH 214 3 HOH HOH 414 A HOH 365 3 HOH HOH 415 A HOH 284 3 HOH HOH 416 A HOH 243 3 HOH HOH 417 A HOH 233 3 HOH HOH 418 A HOH 269 3 HOH HOH 419 A HOH 382 3 HOH HOH 420 A HOH 275 3 HOH HOH 421 A HOH 324 3 HOH HOH 422 A HOH 300 3 HOH HOH 423 A HOH 234 3 HOH HOH 424 A HOH 289 3 HOH HOH 425 A HOH 363 3 HOH HOH 426 A HOH 250 3 HOH HOH 427 A HOH 266 3 HOH HOH 428 A HOH 263 3 HOH HOH 429 A HOH 238 3 HOH HOH 430 A HOH 294 3 HOH HOH 431 A HOH 332 3 HOH HOH 432 A HOH 273 3 HOH HOH 433 A HOH 231 3 HOH HOH 434 A HOH 303 3 HOH HOH 435 A HOH 281 3 HOH HOH 436 A HOH 408 3 HOH HOH 437 A HOH 389 3 HOH HOH 438 A HOH 282 3 HOH HOH 439 A HOH 285 3 HOH HOH 440 A HOH 350 3 HOH HOH 441 A HOH 353 3 HOH HOH 442 A HOH 291 3 HOH HOH 443 A HOH 330 3 HOH HOH 444 A HOH 253 3 HOH HOH 445 A HOH 288 3 HOH HOH 446 A HOH 252 3 HOH HOH 447 A HOH 338 3 HOH HOH 448 A HOH 244 3 HOH HOH 449 A HOH 329 3 HOH HOH 450 A HOH 335 3 HOH HOH 451 A HOH 239 3 HOH HOH 452 A HOH 318 3 HOH HOH 453 A HOH 295 3 HOH HOH 454 A HOH 360 3 HOH HOH 455 A HOH 386 3 HOH HOH 456 A HOH 258 3 HOH HOH 457 A HOH 406 3 HOH HOH 458 A HOH 341 3 HOH HOH 459 A HOH 348 3 HOH HOH 460 A HOH 223 3 HOH HOH 461 A HOH 393 3 HOH HOH 462 A HOH 385 3 HOH HOH 463 A HOH 384 3 HOH HOH 464 A HOH 358 3 HOH HOH 465 A HOH 354 3 HOH HOH 466 A HOH 366 3 HOH HOH 467 A HOH 405 3 HOH HOH 468 A HOH 351 3 HOH HOH 469 A HOH 371 3 HOH HOH 470 A HOH 309 3 HOH HOH 471 A HOH 398 3 HOH HOH 472 A HOH 340 3 HOH HOH 473 A HOH 302 3 HOH HOH 474 A HOH 394 3 HOH HOH 475 A HOH 367 3 HOH HOH 476 A HOH 381 3 HOH HOH 477 A HOH 407 3 HOH HOH 478 A HOH 331 3 HOH HOH 479 A HOH 372 3 HOH HOH 480 A HOH 319 3 HOH HOH 481 A HOH 392 3 HOH HOH 482 A HOH 369 3 HOH HOH 483 A HOH 323 3 HOH HOH 484 A HOH 326 3 HOH HOH 485 A HOH 315 3 HOH HOH 486 A HOH 355 3 HOH HOH 487 A HOH 388 3 HOH HOH 488 A HOH 342 3 HOH HOH 489 A HOH 401 3 HOH HOH 490 A HOH 380 3 HOH HOH 491 A HOH 396 3 HOH HOH 492 A HOH 400 3 HOH HOH 493 A HOH 310 3 HOH HOH 494 A HOH 370 3 HOH HOH 495 A HOH 390 3 HOH HOH 496 A HOH 308 3 HOH HOH 497 A HOH 373 3 HOH HOH 498 A GLY 0 n 1 GLY 0 A MSE 1 n 2 MSE 1 A ALA 2 n 3 ALA 2 A SER 3 n 4 SER 3 A LYS 4 n 5 LYS 4 A ARG 5 n 6 ARG 5 A ALA 6 n 7 ALA 6 A LEU 7 n 8 LEU 7 A VAL 8 n 9 VAL 8 A ILE 9 n 10 ILE 9 A LEU 10 n 11 LEU 10 A ALA 11 n 12 ALA 11 A LYS 12 n 13 LYS 12 A GLY 13 n 14 GLY 13 A ALA 14 n 15 ALA 14 A GLU 15 n 16 GLU 15 A GLU 16 n 17 GLU 16 A MSE 17 n 18 MSE 17 A GLU 18 n 19 GLU 18 A THR 19 n 20 THR 19 A VAL 20 n 21 VAL 20 A ILE 21 n 22 ILE 21 A PRO 22 n 23 PRO 22 A VAL 23 n 24 VAL 23 A ASP 24 n 25 ASP 24 A VAL 25 n 26 VAL 25 A MSE 26 n 27 MSE 26 A ARG 27 n 28 ARG 27 A ARG 28 n 29 ARG 28 A ALA 29 n 30 ALA 29 A GLY 30 n 31 GLY 30 A ILE 31 n 32 ILE 31 A LYS 32 n 33 LYS 32 A VAL 33 n 34 VAL 33 A THR 34 n 35 THR 34 A VAL 35 n 36 VAL 35 A ALA 36 n 37 ALA 36 A GLY 37 n 38 GLY 37 A LEU 38 n 39 LEU 38 A ALA 39 n 40 ALA 39 A GLY 40 n 41 GLY 40 A LYS 41 n 42 LYS 41 A ASP 42 n 43 ASP 42 A PRO 43 n 44 PRO 43 A VAL 44 n 45 VAL 44 A GLN 45 n 46 GLN 45 A CYS 46 n 47 CYS 46 A SER 47 n 48 SER 47 A ARG 48 n 49 ARG 48 A ASP 49 n 50 ASP 49 A VAL 50 n 51 VAL 50 A VAL 51 n 52 VAL 51 A ILE 52 n 53 ILE 52 A CYS 53 n 54 CYS 53 A PRO 54 n 55 PRO 54 A ASP 55 n 56 ASP 55 A ALA 56 n 57 ALA 56 A SER 57 n 58 SER 57 A LEU 58 n 59 LEU 58 A GLU 59 n 60 GLU 59 A ASP 60 n 61 ASP 60 A ALA 61 n 62 ALA 61 A LYS 62 n 63 LYS 62 A LYS 63 n 64 LYS 63 A GLU 64 n 65 GLU 64 A GLY 65 n 66 GLY 65 A PRO 66 n 67 PRO 66 A TYR 67 n 68 TYR 67 A ASP 68 n 69 ASP 68 A VAL 69 n 70 VAL 69 A VAL 70 n 71 VAL 70 A VAL 71 n 72 VAL 71 A LEU 72 n 73 LEU 72 A PRO 73 n 74 PRO 73 A GLY 74 n 75 GLY 74 A GLY 75 n 76 GLY 75 A ASN 76 n 77 ASN 76 A LEU 77 n 78 LEU 77 A GLY 78 n 79 GLY 78 A ALA 79 n 80 ALA 79 A GLN 80 n 81 GLN 80 A ASN 81 n 82 ASN 81 A LEU 82 n 83 LEU 82 A SER 83 n 84 SER 83 A GLU 84 n 85 GLU 84 A SER 85 n 86 SER 85 A ALA 86 n 87 ALA 86 A ALA 87 n 88 ALA 87 A VAL 88 n 89 VAL 88 A LYS 89 n 90 LYS 89 A GLU 90 n 91 GLU 90 A ILE 91 n 92 ILE 91 A LEU 92 n 93 LEU 92 A LYS 93 n 94 LYS 93 A GLU 94 n 95 GLU 94 A GLN 95 n 96 GLN 95 A GLU 96 n 97 GLU 96 A ASN 97 n 98 ASN 97 A ARG 98 n 99 ARG 98 A LYS 99 n 100 LYS 99 A GLY 100 n 101 GLY 100 A LEU 101 n 102 LEU 101 A ILE 102 n 103 ILE 102 A ALA 103 n 104 ALA 103 A ALA 104 n 105 ALA 104 A ILE 105 n 106 ILE 105 A CYS 106 n 107 CYS 106 A ALA 107 n 108 ALA 107 A GLY 108 n 109 GLY 108 A PRO 109 n 110 PRO 109 A THR 110 n 111 THR 110 A ALA 111 n 112 ALA 111 A LEU 112 n 113 LEU 112 A LEU 113 n 114 LEU 113 A ALA 114 n 115 ALA 114 A HIS 115 n 116 HIS 115 A GLU 116 n 117 GLU 116 A ILE 117 n 118 ILE 117 A GLY 118 n 119 GLY 118 A PHE 119 n 120 PHE 119 A GLY 120 n 121 GLY 120 A SER 121 n 122 SER 121 A LYS 122 n 123 LYS 122 A VAL 123 n 124 VAL 123 A THR 124 n 125 THR 124 A THR 125 n 126 THR 125 A HIS 126 n 127 HIS 126 A PRO 127 n 128 PRO 127 A LEU 128 n 129 LEU 128 A ALA 129 n 130 ALA 129 A LYS 130 n 131 LYS 130 A ASP 131 n 132 ASP 131 A LYS 132 n 133 LYS 132 A MSE 133 n 134 MSE 133 A MSE 134 n 135 MSE 134 A ASN 135 n 136 ASN 135 A GLY 136 n 137 GLY 136 A GLY 137 n 138 GLY 137 A HIS 138 n 139 HIS 138 A TYR 139 n 140 TYR 139 A THR 140 n 141 THR 140 A TYR 141 n 142 TYR 141 A SER 142 n 143 SER 142 A GLU 143 n 144 GLU 143 A ASN 144 n 145 ASN 144 A ARG 145 n 146 ARG 145 A VAL 146 n 147 VAL 146 A GLU 147 n 148 GLU 147 A LYS 148 n 149 LYS 148 A ASP 149 n 150 ASP 149 A GLY 150 n 151 GLY 150 A LEU 151 n 152 LEU 151 A ILE 152 n 153 ILE 152 A LEU 153 n 154 LEU 153 A THR 154 n 155 THR 154 A SER 155 n 156 SER 155 A ARG 156 n 157 ARG 156 A GLY 157 n 158 GLY 157 A PRO 158 n 159 PRO 158 A GLY 159 n 160 GLY 159 A THR 160 n 161 THR 160 A SER 161 n 162 SER 161 A PHE 162 n 163 PHE 162 A GLU 163 n 164 GLU 163 A PHE 164 n 165 PHE 164 A ALA 165 n 166 ALA 165 A LEU 166 n 167 LEU 166 A ALA 167 n 168 ALA 167 A ILE 168 n 169 ILE 168 A VAL 169 n 170 VAL 169 A GLU 170 n 171 GLU 170 A ALA 171 n 172 ALA 171 A LEU 172 n 173 LEU 172 A ASN 173 n 174 ASN 173 A GLY 174 n 175 GLY 174 A LYS 175 n 176 LYS 175 A GLU 176 n 177 GLU 176 A VAL 177 n 178 VAL 177 A ALA 178 n 179 ALA 178 A ALA 179 n 180 ALA 179 A GLN 180 n 181 GLN 180 A VAL 181 n 182 VAL 181 A LYS 182 n 183 LYS 182 A ALA 183 n 184 ALA 183 A PRO 184 n 185 PRO 184 A LEU 185 n 186 LEU 185 A VAL 186 n 187 VAL 186 A LEU 187 n 188 LEU 187 A LYS 188 n 189 LYS 188 A ASP 189 n 190 ASP 189 A author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric 6200 30 15820 A MSE 1 modified residue A MSE 2 MET A MSE 17 modified residue A MSE 18 MET A MSE 26 modified residue A MSE 27 MET A MSE 133 modified residue A MSE 134 MET A MSE 134 modified residue A MSE 135 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 56 A O ALA 57 A N GLY 37 A N GLY 38 A O ALA 36 A O ALA 37 A N VAL 8 A N VAL 9 A N LEU 7 A N LEU 8 A O VAL 71 A O VAL 72 A N VAL 70 A N VAL 71 A O ALA 103 A O ALA 104 A N ILE 102 A N ILE 103 A O LEU 153 A O LEU 154 A O THR 154 A O THR 155 A N GLU 147 A N GLU 148 A N VAL 44 A N VAL 45 A O ILE 52 A O ILE 53 A N VAL 123 A N VAL 124 A O THR 140 A O THR 141 1 A A CD OE2 GLU GLU 59 59 -0.106 0.011 1.252 1.146 N 1 A CYS 106 76.74 -102.14 103.570 17.4434 7.020 0.2000 0.1000 0.0000 0.2000 -0.0000 -0.6400 0.9820 0.9760 1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE SAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 3. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 4. EDO MODELED WAS PRESENT IN CRYO CONDITION. 0.1339 0.1164 0.1172 1.2300 29.796 3374 66326 69700 4.8000 98.2300 1.000 0.200 0.9310 0.0170 RANDOM 1 THROUGHOUT 0.000 SAD 0.0270 0.0270 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.2300 29.796 198 1634 40 0 1396 0.016 0.022 1557 0.003 0.020 1631 1.697 2.009 2100 1.091 3.000 3785 6.157 5.000 219 36.157 25.455 55 11.474 15.000 298 19.353 15.000 8 0.104 0.200 246 0.009 0.021 1745 0.004 0.020 297 2.064 2.409 801 1.992 2.402 800 2.034 4.542 1009 2.717 3.000 3187 30.129 5.000 129 8.773 5.000 3237 0.2930 0.2870 1.2620 192 4272 4464 20 85.7100 1.23 29.796 4ZGG 69760 69760 0.046 0.124 0.115 1 3.912 8.100 479140 6.900 98.300 0.913 0.804 1.230 1.260 0.9 18482 4473 0.422 0.913 0.804 1 1.700 4.100 86.100 0.755 0.679 1.260 1.300 1.1 23343 4608 0.324 0.755 0.679 2.200 5.100 91.600 0.626 0.577 1.300 1.330 1.3 31740 4860 0.242 0.626 0.577 2.900 6.500 99.000 0.530 0.491 1.330 1.380 1.5 34280 4797 0.197 0.530 0.491 3.500 7.100 100.000 0.447 0.415 1.380 1.420 1.8 33558 4672 0.166 0.447 0.415 4.100 7.200 100.000 0.365 0.338 1.420 1.470 2.2 32593 4516 0.135 0.365 0.338 4.800 7.200 100.000 0.298 0.277 1.470 1.530 2.7 31376 4334 0.110 0.298 0.277 5.600 7.200 100.000 0.258 0.240 1.530 1.590 3.1 30085 4141 0.096 0.258 0.240 6.400 7.300 100.000 0.223 0.207 1.590 1.660 3.5 29636 4063 0.082 0.223 0.207 7.400 7.300 100.000 0.192 0.178 1.660 1.740 4.0 28022 3832 0.070 0.192 0.178 8.300 7.300 100.000 0.169 0.157 1.740 1.830 4.4 26857 3662 0.062 0.169 0.157 9.600 7.300 100.000 0.148 0.138 1.830 1.940 4.9 25467 3474 0.055 0.148 0.138 11.000 7.300 100.000 0.138 0.128 1.940 2.080 5.1 24154 3284 0.050 0.138 0.128 12.800 7.400 100.000 0.123 0.114 2.080 2.250 5.7 22272 3027 0.045 0.123 0.114 14.400 7.400 100.000 0.110 0.102 2.250 2.460 6.5 20971 2841 0.040 0.110 0.102 15.500 7.400 100.000 0.109 0.101 2.460 2.750 6.4 18726 2544 0.040 0.109 0.101 16.300 7.400 100.000 0.107 0.100 2.750 3.180 6.5 16614 2269 0.039 0.107 0.100 17.300 7.300 100.000 0.081 0.075 3.180 3.890 8.4 14218 1950 0.030 0.081 0.075 18.900 7.300 100.000 0.073 0.068 3.890 5.500 9.3 10929 1528 0.027 0.073 0.068 19.200 7.200 100.000 0.087 0.080 5.500 29.796 8.2 5817 885 0.033 0.087 0.080 17.100 6.600 98.900 data extraction PDB_EXTRACT 3.10 phasing SOLVE data scaling SCALA 3.3.20 refinement REFMAC 5.8.0103 data reduction MOSFLM Crystal structure of a DJ-1 (PARK7) from Homo sapiens at 1.23 A resolution 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N A GLU 15 A GLU 16 HELX_P A ALA 29 A ALA 30 1 AA1 15 A LEU 58 A LEU 59 HELX_P A LYS 62 A LYS 63 1 AA2 5 A LYS 63 A LYS 64 HELX_P A GLY 65 A GLY 66 5 AA3 3 A GLY 75 A GLY 76 HELX_P A SER 85 A SER 86 1 AA4 11 A SER 85 A SER 86 HELX_P A ARG 98 A ARG 99 1 AA5 14 A PRO 109 A PRO 110 HELX_P A HIS 115 A HIS 116 1 AA6 7 A HIS 126 A HIS 127 HELX_P A LEU 128 A LEU 129 5 AA7 3 A ALA 129 A ALA 130 HELX_P A MSE 134 A MSE 135 1 AA8 6 A GLY 157 A GLY 158 HELX_P A GLY 159 A GLY 160 5 AA9 3 A THR 160 A THR 161 HELX_P A GLY 174 A GLY 175 1 AB1 15 A GLY 174 A GLY 175 HELX_P A ALA 183 A ALA 184 1 AB2 10 A PRO 184 A PRO 185 HELX_P A VAL 186 A VAL 187 5 AB3 3 covale 1.343 both A GLY 0 A C GLY 1 1_555 A MSE 1 A N MSE 2 1_555 covale 1.334 both A A MSE 1 A C MSE 2 1_555 A ALA 2 A N ALA 3 1_555 covale 1.335 both B A MSE 1 A C MSE 2 1_555 A ALA 2 A N ALA 3 1_555 covale 1.324 both A GLU 16 A C GLU 17 1_555 A MSE 17 A N MSE 18 1_555 covale 1.327 both A MSE 17 A C MSE 18 1_555 A GLU 18 A N GLU 19 1_555 covale 1.335 both A VAL 25 A C VAL 26 1_555 A MSE 26 A N MSE 27 1_555 covale 1.323 both A MSE 26 A C MSE 27 1_555 A ARG 27 A N ARG 28 1_555 covale 1.328 both A LYS 132 A C LYS 133 1_555 A MSE 133 A N MSE 134 1_555 covale 1.335 both A MSE 133 A C MSE 134 1_555 A MSE 134 A N MSE 135 1_555 covale 1.334 both A MSE 134 A C MSE 135 1_555 A ASN 135 A N ASN 136 1_555 CHAPERONE Parkinson disease, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, Partnership for Nuclear Receptor Signaling Code Biology, NHRs, Partnership for T-Cell Biology, TCELL, PSI-BIOLOGY, CHAPERONE A GLY 65 A GLY 66 1 A PRO 66 A PRO 67 4.06 PARK7_HUMAN UNP 1 1 Q99497 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ NLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGT SFEFALAIVEALNGKEVAAQVKAPLVLKD 1 189 4ZGG 1 189 Q99497 A 1 2 190 1 expression tag GLY 0 4ZGG A Q99497 UNP 1 7 2 2 parallel parallel parallel parallel parallel anti-parallel anti-parallel parallel A ALA 56 A ALA 57 A SER 57 A SER 58 A LYS 32 A LYS 33 A GLY 37 A GLY 38 A ARG 5 A ARG 6 A LEU 10 A LEU 11 A VAL 69 A VAL 70 A LEU 72 A LEU 73 A LEU 101 A LEU 102 A ILE 105 A ILE 106 A ILE 152 A ILE 153 A SER 155 A SER 156 A VAL 146 A VAL 147 A ASP 149 A ASP 150 A VAL 44 A VAL 45 A GLN 45 A GLN 46 A VAL 51 A VAL 52 A ILE 52 A ILE 53 A LYS 122 A LYS 123 A VAL 123 A VAL 124 A THR 140 A THR 141 A TYR 141 A TYR 142 binding site for residue EDO A 201 A EDO 201 Software 7 binding site for residue EDO A 202 A EDO 202 Software 3 binding site for residue EDO A 203 A EDO 203 Software 6 binding site for residue EDO A 204 A EDO 204 Software 6 binding site for residue EDO A 205 A EDO 205 Software 4 binding site for residue EDO A 206 A EDO 206 Software 4 binding site for residue EDO A 207 A EDO 207 Software 6 binding site for residue EDO A 208 A EDO 208 Software 3 binding site for residue EDO A 209 A EDO 209 Software 3 binding site for residue EDO A 210 A EDO 210 Software 4 A LYS 12 A LYS 13 7 1_555 A GLN 45 A GLN 46 7 1_555 A LYS 122 A LYS 123 7 3_664 A GLU 147 A GLU 148 7 3_664 A LYS 148 A LYS 149 7 3_664 A ASP 149 A ASP 150 7 3_664 A HOH 316 L HOH 7 3_664 A ASN 76 A ASN 77 3 1_555 A HOH 382 L HOH 3 3_664 A HOH 497 L HOH 3 3_664 A ARG 28 A ARG 29 6 4_555 A HIS 126 A HIS 127 6 1_555 A PRO 158 A PRO 159 6 1_555 A PRO 184 A PRO 185 6 4_555 A HOH 313 L HOH 6 1_555 A HOH 382 L HOH 6 3_664 A PRO 66 A PRO 67 6 1_555 A TYR 67 A TYR 68 6 1_555 A GLU 94 A GLU 95 6 1_555 A GLN 95 A GLN 96 6 1_555 A HOH 311 L HOH 6 1_555 A HOH 314 L HOH 6 1_555 A GLN 80 A GLN 81 4 1_555 A ASN 81 A ASN 82 4 1_555 A GLU 84 A GLU 85 4 1_555 A LYS 99 A LYS 100 4 3_664 A GLN 80 A GLN 81 4 1_555 A GLU 96 A GLU 97 4 3_664 A LYS 132 A LYS 133 4 1_555 A HOH 490 L HOH 4 3_664 A LYS 175 A LYS 176 6 1_555 A ALA 178 A ALA 179 6 1_555 A ALA 179 A ALA 180 6 1_555 A HOH 312 L HOH 6 1_555 A HOH 335 L HOH 6 1_555 A HOH 479 L HOH 6 1_555 A LYS 175 A LYS 176 3 1_555 A GLU 176 A GLU 177 3 1_555 A ALA 179 A ALA 180 3 1_555 A CYS 53 A CYS 54 3 1_555 A PRO 54 A PRO 55 3 1_555 A ASP 55 A ASP 56 3 1_555 A VAL 33 A VAL 34 4 1_555 A THR 34 A THR 35 4 1_555 A HOH 360 L HOH 4 1_555 A HOH 378 L HOH 4 1_555 152 P 31 2 1