0.027315 0.000000 0.000000 -0.000000 0.017683 0.000000 0.000000 -0.000000 0.010276 0.000000 0.000000 0.000000 Twarda-Clapa, A. Zak, K.M. Wrona, E.M. Grudnik, P. Dubin, G. Holak, T.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 36.610 56.550 97.310 C26 H18 Cl3 N O3 498.785 (5R)-3,5-bis(4-chlorobenzyl)-4-(6-chloro-1H-indol-3-yl)-5-hydroxyfuran-2(5H)-one non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N CL Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C N 8 N C N 9 N C N 10 N C N 11 N O N 12 N O N 13 R C N 14 N O N 15 N C Y 16 N C Y 17 N C Y 18 N C Y 19 N C Y 20 N C Y 21 N C N 22 N CL N 23 N C Y 24 N C Y 25 N C Y 26 N N Y 27 N C Y 28 N C Y 29 N C Y 30 N C N 31 N CL Y 32 N C Y 33 N C N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N N N 53 S C N 54 N C N 55 N O N 56 N C N 57 N O N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N C N 72 N N N 73 N C N 74 N N N 75 N N N 76 N O N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N N N 93 S C N 94 N C N 95 N O N 96 N C N 97 N C N 98 N O N 99 N N N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N N N 126 R C N 127 N C N 128 N O N 129 N C N 130 N S N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N N N 140 S C N 141 N C N 142 N O N 143 N C N 144 N C N 145 N C N 146 N O N 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 N C N 164 N C N 165 N C N 166 N O N 167 N O N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N N N 179 N C N 180 N C N 181 N O N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C Y 193 N C Y 194 N N Y 195 N C Y 196 N C Y 197 N N N 198 N O N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N O N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 S C N 217 N C N 218 N C N 219 N C N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N C N 241 N C N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N C N 262 N C N 263 N C N 264 N N N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C N 286 N C N 287 N S N 288 N C N 289 N O N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C N 329 N C N 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 R C N 360 N O N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C N 383 N O N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C N 401 N C N 402 N C N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 1 N sing Y 2 N doub Y 3 N sing N 4 N sing Y 5 N sing Y 6 N doub Y 7 N sing Y 8 N doub Y 9 N sing N 10 N doub Y 11 N doub Y 12 N doub Y 13 N sing N 14 N sing Y 15 N doub N 16 N sing N 17 N sing N 18 N sing Y 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing Y 27 N doub Y 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub Y 32 N sing Y 33 N sing Y 34 N doub Y 35 N doub Y 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N doub N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing Y 195 N sing Y 196 N doub Y 197 N doub N 198 N sing Y 199 N sing N 200 N sing Y 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing Y 303 N doub Y 304 N sing Y 305 N sing N 306 N sing Y 307 N doub N 308 N sing Y 309 N doub N 310 N sing Y 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing Y 372 N doub Y 373 N sing Y 374 N sing N 375 N sing Y 376 N doub N 377 N sing Y 378 N doub N 379 N sing Y 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing US ACS Chem. Biol. 1554-8937 11 3310 3318 10.1021/acschembio.6b00596 27709883 A Unique Mdm2-Binding Mode of the 3-Pyrrolin-2-one- and 2-Furanone-Based Antagonists of the p53-Mdm2 Interaction. 2016 10.2210/pdb4zgk/pdb pdb_00004zgk 100 1 PIXEL 2014-11-27 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.873 1.0 ID23-2 ESRF 0.873 SYNCHROTRON ESRF BEAMLINE ID23-2 11528.488 E3 ubiquitin-protein ligase Mdm2 6.3.2.- UNP residues 18-114 2 man polymer 498.785 (5R)-3,5-bis(4-chlorobenzyl)-4-(6-chloro-1H-indol-3-yl)-5-hydroxyfuran-2(5H)-one 2 syn non-polymer 18.015 water 114 nat water Double minute 2 protein,Hdm2,Oncoprotein Mdm2,p53-binding protein Mdm2 no no MQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQE MQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 98 MDM2 9606 Homo sapiens 511693 Escherichia coli BL21 Biological sequence 1 2.21 44.38 VAPOR DIFFUSION, SITTING DROP 0.1 M HEPES pH 7.5 containing 30% PEG 1000 277.15 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ncs_dom_lim repository Initial release Database references Data collection Database references Refinement description 1 0 2016-10-19 1 1 2016-12-28 1 2 2024-01-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id Poland Foundation for Polish Science TEAM/2011-8/2 Poland National Centre of Science UMO-2011/01/D/NZ1/01169 4ZFI contains the same protein in complex with different small molecule group based on the same scaffold. N RCSB Y PDBE 2015-04-23 REL REL 4NX (5R)-3,5-bis(4-chlorobenzyl)-4-(6-chloro-1H-indol-3-yl)-5-hydroxyfuran-2(5H)-one HOH water 3TJ2 PDB experimental model p2d 2 2 4NX 4NX 201 A p2d 1 2 4NX 4NX 201 B HOH 135 3 HOH HOH 301 A HOH 7 3 HOH HOH 302 A HOH 34 3 HOH HOH 303 A HOH 163 3 HOH HOH 304 A HOH 148 3 HOH HOH 305 A HOH 12 3 HOH HOH 306 A HOH 84 3 HOH HOH 307 A HOH 11 3 HOH HOH 308 A HOH 138 3 HOH HOH 309 A HOH 173 3 HOH HOH 310 A HOH 213 3 HOH HOH 311 A HOH 125 3 HOH HOH 312 A HOH 243 3 HOH HOH 313 A HOH 53 3 HOH HOH 314 A HOH 52 3 HOH HOH 315 A HOH 86 3 HOH HOH 316 A HOH 13 3 HOH HOH 317 A HOH 1 3 HOH HOH 318 A HOH 101 3 HOH HOH 319 A HOH 55 3 HOH HOH 320 A HOH 65 3 HOH HOH 321 A HOH 35 3 HOH HOH 322 A HOH 130 3 HOH HOH 323 A HOH 97 3 HOH HOH 324 A HOH 56 3 HOH HOH 325 A HOH 131 3 HOH HOH 326 A HOH 6 3 HOH HOH 327 A HOH 221 3 HOH HOH 328 A HOH 43 3 HOH HOH 329 A HOH 60 3 HOH HOH 330 A HOH 140 3 HOH HOH 331 A HOH 96 3 HOH HOH 332 A HOH 57 3 HOH HOH 333 A HOH 244 3 HOH HOH 334 A HOH 66 3 HOH HOH 335 A HOH 133 3 HOH HOH 336 A HOH 158 3 HOH HOH 337 A HOH 233 3 HOH HOH 338 A HOH 188 3 HOH HOH 339 A HOH 83 3 HOH HOH 340 A HOH 8 3 HOH HOH 341 A HOH 129 3 HOH HOH 342 A HOH 63 3 HOH HOH 343 A HOH 237 3 HOH HOH 344 A HOH 9 3 HOH HOH 345 A HOH 225 3 HOH HOH 346 A HOH 134 3 HOH HOH 347 A HOH 47 3 HOH HOH 301 B HOH 74 3 HOH HOH 302 B HOH 209 3 HOH HOH 303 B HOH 190 3 HOH HOH 304 B HOH 73 3 HOH HOH 305 B HOH 18 3 HOH HOH 306 B HOH 145 3 HOH HOH 307 B HOH 164 3 HOH HOH 308 B HOH 99 3 HOH HOH 309 B HOH 245 3 HOH HOH 310 B HOH 127 3 HOH HOH 311 B HOH 136 3 HOH HOH 312 B HOH 242 3 HOH HOH 313 B HOH 54 3 HOH HOH 314 B HOH 2 3 HOH HOH 315 B HOH 189 3 HOH HOH 316 B HOH 28 3 HOH HOH 317 B HOH 25 3 HOH HOH 318 B HOH 155 3 HOH HOH 319 B HOH 104 3 HOH HOH 320 B HOH 202 3 HOH HOH 321 B HOH 22 3 HOH HOH 322 B HOH 106 3 HOH HOH 323 B HOH 150 3 HOH HOH 324 B HOH 17 3 HOH HOH 325 B HOH 77 3 HOH HOH 326 B HOH 152 3 HOH HOH 327 B HOH 71 3 HOH HOH 328 B HOH 123 3 HOH HOH 329 B HOH 206 3 HOH HOH 330 B HOH 160 3 HOH HOH 331 B HOH 27 3 HOH HOH 332 B HOH 20 3 HOH HOH 333 B HOH 23 3 HOH HOH 334 B HOH 70 3 HOH HOH 335 B HOH 230 3 HOH HOH 336 B HOH 228 3 HOH HOH 337 B HOH 143 3 HOH HOH 338 B HOH 102 3 HOH HOH 339 B HOH 26 3 HOH HOH 340 B HOH 166 3 HOH HOH 341 B HOH 137 3 HOH HOH 342 B HOH 208 3 HOH HOH 343 B HOH 193 3 HOH HOH 344 B HOH 62 3 HOH HOH 345 B HOH 21 3 HOH HOH 346 B HOH 15 3 HOH HOH 347 B HOH 75 3 HOH HOH 348 B HOH 3 3 HOH HOH 349 B HOH 157 3 HOH HOH 350 B HOH 205 3 HOH HOH 351 B HOH 38 3 HOH HOH 352 B HOH 235 3 HOH HOH 353 B HOH 210 3 HOH HOH 354 B HOH 240 3 HOH HOH 355 B HOH 222 3 HOH HOH 356 B HOH 227 3 HOH HOH 357 B HOH 24 3 HOH HOH 358 B HOH 192 3 HOH HOH 359 B HOH 61 3 HOH HOH 360 B HOH 203 3 HOH HOH 361 B HOH 121 3 HOH HOH 362 B HOH 191 3 HOH HOH 363 B HOH 223 3 HOH HOH 364 B HOH 156 3 HOH HOH 365 B HOH 241 3 HOH HOH 366 B HOH 39 3 HOH HOH 367 B 3.880 3.880 29.310 29.310 Phaser MODE: MR_AUTO MET 17 n 1 MET 17 A GLN 18 n 2 GLN 18 A ILE 19 n 3 ILE 19 A PRO 20 n 4 PRO 20 A ALA 21 n 5 ALA 21 A SER 22 n 6 SER 22 A GLU 23 n 7 GLU 23 A GLN 24 n 8 GLN 24 A GLU 25 n 9 GLU 25 A THR 26 n 10 THR 26 A LEU 27 n 11 LEU 27 A VAL 28 n 12 VAL 28 A ARG 29 n 13 ARG 29 A PRO 30 n 14 PRO 30 A LYS 31 n 15 LYS 31 A PRO 32 n 16 PRO 32 A LEU 33 n 17 LEU 33 A LEU 34 n 18 LEU 34 A LEU 35 n 19 LEU 35 A LYS 36 n 20 LYS 36 A LEU 37 n 21 LEU 37 A LEU 38 n 22 LEU 38 A LYS 39 n 23 LYS 39 A SER 40 n 24 SER 40 A VAL 41 n 25 VAL 41 A GLY 42 n 26 GLY 42 A ALA 43 n 27 ALA 43 A GLN 44 n 28 GLN 44 A LYS 45 n 29 LYS 45 A ASP 46 n 30 ASP 46 A THR 47 n 31 THR 47 A TYR 48 n 32 TYR 48 A THR 49 n 33 THR 49 A MET 50 n 34 MET 50 A LYS 51 n 35 LYS 51 A GLU 52 n 36 GLU 52 A VAL 53 n 37 VAL 53 A LEU 54 n 38 LEU 54 A PHE 55 n 39 PHE 55 A TYR 56 n 40 TYR 56 A LEU 57 n 41 LEU 57 A GLY 58 n 42 GLY 58 A GLN 59 n 43 GLN 59 A TYR 60 n 44 TYR 60 A ILE 61 n 45 ILE 61 A MET 62 n 46 MET 62 A THR 63 n 47 THR 63 A LYS 64 n 48 LYS 64 A ARG 65 n 49 ARG 65 A LEU 66 n 50 LEU 66 A TYR 67 n 51 TYR 67 A ASP 68 n 52 ASP 68 A GLU 69 n 53 GLU 69 A LYS 70 n 54 LYS 70 A GLN 71 n 55 GLN 71 A GLN 72 n 56 GLN 72 A HIS 73 n 57 HIS 73 A ILE 74 n 58 ILE 74 A VAL 75 n 59 VAL 75 A TYR 76 n 60 TYR 76 A CYS 77 n 61 CYS 77 A SER 78 n 62 SER 78 A ASN 79 n 63 ASN 79 A ASP 80 n 64 ASP 80 A LEU 81 n 65 LEU 81 A LEU 82 n 66 LEU 82 A GLY 83 n 67 GLY 83 A ASP 84 n 68 ASP 84 A LEU 85 n 69 LEU 85 A PHE 86 n 70 PHE 86 A GLY 87 n 71 GLY 87 A VAL 88 n 72 VAL 88 A PRO 89 n 73 PRO 89 A SER 90 n 74 SER 90 A PHE 91 n 75 PHE 91 A SER 92 n 76 SER 92 A VAL 93 n 77 VAL 93 A LYS 94 n 78 LYS 94 A GLU 95 n 79 GLU 95 A HIS 96 n 80 HIS 96 A ARG 97 n 81 ARG 97 A LYS 98 n 82 LYS 98 A ILE 99 n 83 ILE 99 A TYR 100 n 84 TYR 100 A THR 101 n 85 THR 101 A MET 102 n 86 MET 102 A ILE 103 n 87 ILE 103 A TYR 104 n 88 TYR 104 A ARG 105 n 89 ARG 105 A ASN 106 n 90 ASN 106 A LEU 107 n 91 LEU 107 A VAL 108 n 92 VAL 108 A VAL 109 n 93 VAL 109 A VAL 110 n 94 VAL 110 A n 95 111 A n 96 112 A n 97 113 A n 98 114 A n 1 17 B GLN 18 n 2 GLN 18 B ILE 19 n 3 ILE 19 B PRO 20 n 4 PRO 20 B ALA 21 n 5 ALA 21 B SER 22 n 6 SER 22 B GLU 23 n 7 GLU 23 B GLN 24 n 8 GLN 24 B GLU 25 n 9 GLU 25 B THR 26 n 10 THR 26 B LEU 27 n 11 LEU 27 B VAL 28 n 12 VAL 28 B ARG 29 n 13 ARG 29 B PRO 30 n 14 PRO 30 B LYS 31 n 15 LYS 31 B PRO 32 n 16 PRO 32 B LEU 33 n 17 LEU 33 B LEU 34 n 18 LEU 34 B LEU 35 n 19 LEU 35 B LYS 36 n 20 LYS 36 B LEU 37 n 21 LEU 37 B LEU 38 n 22 LEU 38 B LYS 39 n 23 LYS 39 B SER 40 n 24 SER 40 B VAL 41 n 25 VAL 41 B GLY 42 n 26 GLY 42 B ALA 43 n 27 ALA 43 B GLN 44 n 28 GLN 44 B LYS 45 n 29 LYS 45 B ASP 46 n 30 ASP 46 B THR 47 n 31 THR 47 B TYR 48 n 32 TYR 48 B THR 49 n 33 THR 49 B MET 50 n 34 MET 50 B LYS 51 n 35 LYS 51 B GLU 52 n 36 GLU 52 B VAL 53 n 37 VAL 53 B LEU 54 n 38 LEU 54 B PHE 55 n 39 PHE 55 B TYR 56 n 40 TYR 56 B LEU 57 n 41 LEU 57 B GLY 58 n 42 GLY 58 B GLN 59 n 43 GLN 59 B TYR 60 n 44 TYR 60 B ILE 61 n 45 ILE 61 B MET 62 n 46 MET 62 B THR 63 n 47 THR 63 B LYS 64 n 48 LYS 64 B ARG 65 n 49 ARG 65 B LEU 66 n 50 LEU 66 B TYR 67 n 51 TYR 67 B ASP 68 n 52 ASP 68 B GLU 69 n 53 GLU 69 B LYS 70 n 54 LYS 70 B GLN 71 n 55 GLN 71 B GLN 72 n 56 GLN 72 B HIS 73 n 57 HIS 73 B ILE 74 n 58 ILE 74 B VAL 75 n 59 VAL 75 B TYR 76 n 60 TYR 76 B CYS 77 n 61 CYS 77 B SER 78 n 62 SER 78 B ASN 79 n 63 ASN 79 B ASP 80 n 64 ASP 80 B LEU 81 n 65 LEU 81 B LEU 82 n 66 LEU 82 B GLY 83 n 67 GLY 83 B ASP 84 n 68 ASP 84 B LEU 85 n 69 LEU 85 B PHE 86 n 70 PHE 86 B GLY 87 n 71 GLY 87 B VAL 88 n 72 VAL 88 B PRO 89 n 73 PRO 89 B SER 90 n 74 SER 90 B PHE 91 n 75 PHE 91 B SER 92 n 76 SER 92 B VAL 93 n 77 VAL 93 B LYS 94 n 78 LYS 94 B GLU 95 n 79 GLU 95 B HIS 96 n 80 HIS 96 B ARG 97 n 81 ARG 97 B LYS 98 n 82 LYS 98 B ILE 99 n 83 ILE 99 B TYR 100 n 84 TYR 100 B THR 101 n 85 THR 101 B MET 102 n 86 MET 102 B ILE 103 n 87 ILE 103 B TYR 104 n 88 TYR 104 B ARG 105 n 89 ARG 105 B ASN 106 n 90 ASN 106 B LEU 107 n 91 LEU 107 B VAL 108 n 92 VAL 108 B VAL 109 n 93 VAL 109 B VAL 110 n 94 VAL 110 B ASN 111 n 95 ASN 111 B GLN 112 n 96 GLN 112 B GLN 113 n 97 GLN 113 B GLU 114 n 98 GLU 114 B 0.3069 0.3950 0.1780 0.5952 0.3736 4.2051 -0.0300 0.0028 0.0036 -0.0222 0.0170 -0.0340 0.1976 0.1766 0.0130 0.0277 0.0035 -0.0071 0.0134 0.0035 0.0303 refined 9.5938 -3.9201 -22.0759 X-RAY DIFFRACTION 1.2204 -0.0615 -0.7898 0.8863 0.0731 3.1978 0.0130 0.0469 -0.0409 -0.0359 -0.0272 -0.0294 0.0644 -0.2253 0.0143 0.0071 -0.0114 0.0015 0.0336 -0.0108 0.0824 refined 2.0244 -1.2072 -44.7590 X-RAY DIFFRACTION A 17 A 110 X-RAY DIFFRACTION 1 B 18 B 114 X-RAY DIFFRACTION 2 author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 48 A O TYR 32 A N VAL 28 A N VAL 12 A N ARG 29 A N ARG 13 A O VAL 108 A O VAL 92 A N VAL 75 A N VAL 59 A O PHE 91 A O PHE 75 B O TYR 48 B O TYR 32 B N VAL 28 B N VAL 12 B N ARG 29 B N ARG 13 B O VAL 108 B O VAL 92 B N VAL 75 B N VAL 59 B O PHE 91 B O PHE 75 1 B CE LYS 94 B CE LYS 78 1 Y 1 B NZ LYS 94 B NZ LYS 78 1 Y 1 B CG GLN 113 B CG GLN 97 1 Y 1 B CD GLN 113 B CD GLN 97 1 Y 1 B OE1 GLN 113 B OE1 GLN 97 1 Y 1 B NE2 GLN 113 B NE2 GLN 97 1 Y 1 B CB GLU 114 B CB GLU 98 1 Y 1 B CG GLU 114 B CG GLU 98 1 Y 1 B CD GLU 114 B CD GLU 98 1 Y 1 B OE1 GLU 114 B OE1 GLU 98 1 Y 1 B OE2 GLU 114 B OE2 GLU 98 1 Y 1 A ASN 111 A ASN 95 1 Y 1 A GLN 112 A GLN 96 1 Y 1 A GLN 113 A GLN 97 1 Y 1 A GLU 114 A GLU 98 1 Y 1 B MET 17 B MET 1 1 Y 1 16.48 2.30 115.30 131.78 B B B CA CB CG LEU LEU LEU 37 37 37 N 65.130 26.6860 9.710 2.2700 0.0000 -0.0000 0.6300 -0.0000 -2.8900 0.9490 0.9080 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2470 0.1881 0.1910 2.0000 30.0000 600 11285 5.0000 83.2900 0.2466 0.1874 0.8231 9.9200 0.1510 0.2619 0.2110 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.2620 0.2110 0.8000 0.8000 1.2000 3TJ2 MAXIMUM LIKELIHOOD MASK 2.0000 30.0000 114 1742 20.51 27.99 66 0 1562 191 0.013 0.019 1687 0.005 0.020 1651 1.874 2.042 2288 1.247 3.000 3799 5.956 5.000 195 45.265 24.118 68 19.811 15.000 319 11.821 15.000 8 0.103 0.200 251 0.008 0.021 1835 0.004 0.020 379 1.241 1.853 771 1.222 1.850 770 1.892 2.760 963 1 A 1 5464 X-RAY DIFFRACTION interatomic distance 0.150 0.050 2 B 1 5464 X-RAY DIFFRACTION interatomic distance 0.150 0.050 0.2920 0.2770 2.0520 48 840 888 20 85.3800 1.739 48.893 4ZGK 11908 11908 0.071 0.151 0.132 1 3.500 6.300 46290 3.900 84.800 0.322 2.000 2.110 2.300 6232 1756 0.186 0.322 1 3.400 3.500 0 86.800 0.290 2.110 2.240 2.500 6077 1639 0.161 0.290 1 3.900 3.700 0 86.500 0.294 2.240 2.390 1.900 6322 1553 0.159 0.294 1 4.400 4.100 0 86.200 0.221 2.390 2.580 3.200 6051 1461 0.116 0.221 1 5.200 4.100 0 86.300 0.183 2.580 2.830 3.700 5223 1326 0.098 0.183 1 5.900 3.900 0 85.200 0.128 2.830 3.160 5.000 4293 1169 0.073 0.128 1 7.400 3.700 0 83.700 0.103 3.160 3.650 5.900 4245 1049 0.054 0.103 1 9.600 4.000 0 83.300 0.089 3.650 4.470 6.300 3688 880 0.046 0.089 1 11.500 4.200 0 81.800 0.091 4.470 6.320 6.500 2563 682 0.051 0.091 1 11.000 3.800 0 79.900 0.096 6.320 29.305 4.300 1596 393 0.047 0.096 1 11.400 4.100 0 78.900 data reduction MOSFLM 7.0.9 data scaling SCALA 3.3.21 phasing PHASER 2.5.5 refinement REFMAC 5.8.0049 data extraction PDB_EXTRACT 3.15 Structure of Mdm2 with low molecular weight inhibitor. 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A PRO 20 A PRO 4 HELX_P A GLU 25 A GLU 9 1 AA1 6 A LYS 31 A LYS 15 HELX_P A VAL 41 A VAL 25 1 AA2 11 A MET 50 A MET 34 HELX_P A LYS 64 A LYS 48 1 AA3 15 A ASP 80 A ASP 64 HELX_P A GLY 87 A GLY 71 1 AA4 8 A GLU 95 A GLU 79 HELX_P A ARG 105 A ARG 89 1 AA5 11 B PRO 20 B PRO 4 HELX_P B GLU 25 B GLU 9 1 AA6 6 B LYS 31 B LYS 15 HELX_P B VAL 41 B VAL 25 1 AA7 11 B MET 50 B MET 34 HELX_P B LYS 64 B LYS 48 1 AA8 15 B ASP 80 B ASP 64 HELX_P B GLY 87 B GLY 71 1 AA9 8 B GLU 95 B GLU 79 HELX_P B ARG 105 B ARG 89 1 AB1 11 LIGASE p53-Mdm2/MdmX interaction, inhibitor, ligase A B A GLN 18 A GLN 2 A VAL 109 A VAL 93 0 B GLN 18 B GLN 2 B VAL 109 B VAL 93 0 MDM2_HUMAN UNP 1 18 Q00987 QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR KIYTMIYRNLVVVNQQE 18 114 4ZGK 18 114 Q00987 A 1 2 98 18 114 4ZGK 18 114 Q00987 B 1 2 98 1 initiating methionine MET 17 4ZGK A Q00987 UNP 1 2 initiating methionine MET 17 4ZGK B Q00987 UNP 1 3 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 48 A TYR 32 A THR 49 A THR 33 A LEU 27 A LEU 11 A PRO 30 A PRO 14 A LEU 107 A LEU 91 A VAL 109 A VAL 93 A ILE 74 A ILE 58 A TYR 76 A TYR 60 A SER 90 A SER 74 A SER 92 A SER 76 B TYR 48 B TYR 32 B THR 49 B THR 33 B LEU 27 B LEU 11 B PRO 30 B PRO 14 B LEU 107 B LEU 91 B VAL 109 B VAL 93 B ILE 74 B ILE 58 B TYR 76 B TYR 60 B SER 90 B SER 74 B SER 92 B SER 76 binding site for residue 4NX A 201 A 4NX 201 Software 12 binding site for residue 4NX B 201 B 4NX 201 Software 12 A LEU 54 A LEU 38 12 1_555 A PHE 55 A PHE 39 12 1_555 A GLY 58 A GLY 42 12 1_555 A TYR 67 A TYR 51 12 1_555 A VAL 93 A VAL 77 12 1_555 A HIS 96 A HIS 80 12 1_555 A ILE 99 A ILE 83 12 1_555 A TYR 100 A TYR 84 12 1_555 A HOH 304 E HOH 12 1_555 A HOH 309 E HOH 12 1_555 A HOH 327 E HOH 12 1_555 B LYS 51 B LYS 35 12 1_555 A LYS 51 A LYS 35 12 1_555 B LEU 54 B LEU 38 12 1_555 B PHE 55 B PHE 39 12 1_555 B GLY 58 B GLY 42 12 1_555 B ILE 61 B ILE 45 12 1_555 B TYR 67 B TYR 51 12 1_555 B VAL 93 B VAL 77 12 1_555 B HIS 96 B HIS 80 12 1_555 B ILE 99 B ILE 83 12 1_555 B TYR 100 B TYR 84 12 1_555 B HOH 318 F HOH 12 1_555 B HOH 323 F HOH 12 1_555 19 P 21 21 21