0.017241
0.000000
0.000000
0.000000
0.011590
0.000000
0.000000
0.000000
0.021678
0.000000
0.000000
0.000000
Wang, Y.-F.
Agniswamy, J.
Weber, I.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.000
86.280
46.130
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C37 H46 N4 O7 S
690.849
N-[(2,5-dimethyl-1,3-oxazol-4-yl)methyl]-N'-[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]-N,5-dimethylbenzene-1,3-dicarboxamide
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
Y
89
N
C
N
90
N
O
N
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
N
97
N
S
N
98
N
O
N
99
N
O
N
100
N
N
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
C
N
106
R
C
N
107
N
O
N
108
S
C
N
109
N
N
N
110
N
C
N
111
N
O
N
112
N
C
Y
113
N
C
Y
114
N
C
Y
115
N
C
Y
116
N
C
Y
117
N
C
Y
118
N
C
Y
119
N
C
Y
120
N
C
Y
121
N
C
Y
122
N
C
Y
123
N
C
Y
124
N
C
N
125
N
C
N
126
N
C
N
127
N
O
N
128
N
N
N
129
N
C
N
130
N
C
Y
131
N
C
Y
132
N
N
Y
133
N
C
Y
134
N
O
Y
135
N
C
N
136
N
C
N
137
N
C
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
O
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
N
C
N
225
N
C
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
S
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
N
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
S
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
NA
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
O
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
R
C
N
420
N
O
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
N
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
N
N
460
S
C
N
461
N
C
N
462
N
O
N
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
N
470
N
O
N
471
N
O
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
N
N
484
S
C
N
485
N
C
N
486
N
O
N
487
N
C
N
488
N
C
N
489
N
C
N
490
N
O
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
sing
Y
85
N
doub
Y
86
N
sing
Y
87
N
sing
Y
88
N
doub
Y
89
N
sing
Y
90
N
sing
N
91
N
sing
Y
92
N
doub
N
93
N
sing
Y
94
N
doub
Y
95
N
doub
Y
96
N
doub
Y
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
N
101
N
sing
Y
102
N
sing
N
103
N
doub
Y
104
N
doub
N
105
N
sing
Y
106
N
doub
N
107
N
sing
Y
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
Y
122
N
doub
Y
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
Y
127
N
sing
N
128
N
sing
Y
129
N
doub
Y
130
N
doub
N
131
N
sing
Y
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
Y
251
N
sing
Y
252
N
doub
Y
253
N
doub
N
254
N
sing
Y
255
N
sing
N
256
N
sing
Y
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
Y
359
N
doub
Y
360
N
sing
Y
361
N
sing
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
Y
456
N
doub
Y
457
N
sing
Y
458
N
sing
N
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
doub
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
1464-3405
25
4903
4909
10.1016/j.bmcl.2015.05.052
26096678
Structure-based design, synthesis, X-ray studies, and biological evaluation of novel HIV-1 protease inhibitors containing isophthalamide-derived P2-ligands.
2015
10.2210/pdb4zip/pdb
pdb_00004zip
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
90
1
CCD
2008-06-12
MARMOSAIC 300 mm CCD
Si
SINGLE WAVELENGTH
M
x-ray
1
0.8
1.0
22-ID
APS
0.8
SYNCHROTRON
APS BEAMLINE 22-ID
10740.677
Protease
3.4.23.16
Q7K, L33I, L63I, C67A, C95A
2
man
polymer
22.990
SODIUM ION
3
syn
non-polymer
35.453
CHLORIDE ION
3
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
690.849
N-[(2,5-dimethyl-1,3-oxazol-4-yl)methyl]-N'-[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]-N,5-dimethylbenzene-1,3-dicarboxamide
1
syn
non-polymer
18.015
water
256
nat
water
PR, Retropepsin
no
no
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HIV-1
isolate BH10
sample
1
99
gag-pol
11678
Human immunodeficiency virus type 1
469008
Escherichia coli
BL21(DE3)
Plasmid
Biological sequence
pET11a
1
2.31
54.22
VAPOR DIFFUSION, HANGING DROP
5.0
0.95 M NaCl, 0.1 M Sodium Acetate, pH 5
5.0
298
pdbx_audit_support
pdbx_struct_oper_list
software
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Data collection
Database references
Author supporting evidence
Derived calculations
Refinement description
Author supporting evidence
Data collection
Database references
Derived calculations
Refinement description
1
0
2015-07-15
1
1
2015-10-28
1
2
2017-09-20
1
3
2019-12-04
1
4
2023-09-27
_pdbx_audit_support.funding_organization
_pdbx_struct_oper_list.symmetry_operation
_software.name
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM62920
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM53386
United States
the Intramural Research Program of the Center for Cancer Research
United States
National Institutes of Health/National Cancer Institute (NIH/NCI)
Japan
Grant-in-Aid for Scientific Research (Priority Areas) from the Ministry of Education, Culture, Sports, Science, and Technology of Japan (Monbu Kagakusho)
Grant-in-Aid for Scientific Research (Priority Areas)
Japan
Ministry of Health, Welfare, and Labor
Grant for Promotion of AIDS Research
Japan
Ministry of Health, Welfare, and Labor
the Grant to the Cooperative Research Project on Clinical and Epidemiological Studies of Emerging and Reemerging Infectious Diseases (Renkei Jigyo) of Monbu-Kagakusho
HIV-1 wild Type protease with Daurnavir (bis-Tetrahydrofuran P2-Ligand)
HIV-1 wild Type protease with GRL-0519A (tris-Tetrahydrofuran P2-Ligand)
HIV-1 wild type protease with GRL-044-10A (a substituted bis-Tetrahydrofuran P2-Ligand)
HIV-1 wild Type protease with GRL-050-10A (a Gem-difluoro-bis-Tetrahydrofuran as P2-Ligand)
N
RCSB
Y
RCSB
2015-04-28
REL
REL
1
A
O
HOH
715
6.27
1
A
O
HOH
716
6.70
1
B
O
HOH
440
7.50
NA
SODIUM ION
CL
CHLORIDE ION
GOL
GLYCEROL
G64
N-[(2,5-dimethyl-1,3-oxazol-4-yl)methyl]-N'-[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]-N,5-dimethylbenzene-1,3-dicarboxamide
HOH
water
3DJK
PDB
experimental model
NA
501
2
NA
NA
501
A
CL
511
3
CL
CL
502
A
GOL
521
4
GOL
GOL
503
A
G64
201
5
G64
G64
201
B
NA
502
2
NA
NA
202
B
NA
503
2
NA
NA
203
B
CL
512
3
CL
CL
204
B
CL
513
3
CL
CL
205
B
HOH
1136
6
HOH
HOH
601
A
HOH
1077
6
HOH
HOH
602
A
HOH
1101
6
HOH
HOH
603
A
HOH
1057
6
HOH
HOH
604
A
HOH
1219
6
HOH
HOH
605
A
HOH
1044
6
HOH
HOH
606
A
HOH
1069
6
HOH
HOH
607
A
HOH
1111
6
HOH
HOH
608
A
HOH
1260
6
HOH
HOH
609
A
HOH
1189
6
HOH
HOH
610
A
HOH
1151
6
HOH
HOH
611
A
HOH
1053
6
HOH
HOH
612
A
HOH
1221
6
HOH
HOH
613
A
HOH
1263
6
HOH
HOH
614
A
HOH
1255
6
HOH
HOH
615
A
HOH
1099
6
HOH
HOH
616
A
HOH
1142
6
HOH
HOH
617
A
HOH
1106
6
HOH
HOH
618
A
HOH
1002
6
HOH
HOH
619
A
HOH
1225
6
HOH
HOH
620
A
HOH
1074
6
HOH
HOH
621
A
HOH
1012
6
HOH
HOH
622
A
HOH
1090
6
HOH
HOH
623
A
HOH
1148
6
HOH
HOH
624
A
HOH
1089
6
HOH
HOH
625
A
HOH
1131
6
HOH
HOH
626
A
HOH
1187
6
HOH
HOH
627
A
HOH
1030
6
HOH
HOH
628
A
HOH
1040
6
HOH
HOH
629
A
HOH
1015
6
HOH
HOH
630
A
HOH
1091
6
HOH
HOH
631
A
HOH
1007
6
HOH
HOH
632
A
HOH
1168
6
HOH
HOH
633
A
HOH
1037
6
HOH
HOH
634
A
HOH
1009
6
HOH
HOH
635
A
HOH
1174
6
HOH
HOH
636
A
HOH
1173
6
HOH
HOH
637
A
HOH
1080
6
HOH
HOH
638
A
HOH
1251
6
HOH
HOH
639
A
HOH
1024
6
HOH
HOH
640
A
HOH
1216
6
HOH
HOH
641
A
HOH
1082
6
HOH
HOH
642
A
HOH
1034
6
HOH
HOH
643
A
HOH
1018
6
HOH
HOH
644
A
HOH
1049
6
HOH
HOH
645
A
HOH
1208
6
HOH
HOH
646
A
HOH
1195
6
HOH
HOH
647
A
HOH
1215
6
HOH
HOH
648
A
HOH
1073
6
HOH
HOH
649
A
HOH
1118
6
HOH
HOH
650
A
HOH
1100
6
HOH
HOH
651
A
HOH
1159
6
HOH
HOH
652
A
HOH
1155
6
HOH
HOH
653
A
HOH
1031
6
HOH
HOH
654
A
HOH
1150
6
HOH
HOH
655
A
HOH
1033
6
HOH
HOH
656
A
HOH
1233
6
HOH
HOH
657
A
HOH
1247
6
HOH
HOH
658
A
HOH
1234
6
HOH
HOH
659
A
HOH
1085
6
HOH
HOH
660
A
HOH
1179
6
HOH
HOH
661
A
HOH
1230
6
HOH
HOH
662
A
HOH
1046
6
HOH
HOH
663
A
HOH
1084
6
HOH
HOH
664
A
HOH
1156
6
HOH
HOH
665
A
HOH
1222
6
HOH
HOH
666
A
HOH
1083
6
HOH
HOH
667
A
HOH
1243
6
HOH
HOH
668
A
HOH
1218
6
HOH
HOH
669
A
HOH
1163
6
HOH
HOH
670
A
HOH
1248
6
HOH
HOH
671
A
HOH
1104
6
HOH
HOH
672
A
HOH
1140
6
HOH
HOH
673
A
HOH
1127
6
HOH
HOH
674
A
HOH
1121
6
HOH
HOH
675
A
HOH
1115
6
HOH
HOH
676
A
HOH
1039
6
HOH
HOH
677
A
HOH
1220
6
HOH
HOH
678
A
HOH
1021
6
HOH
HOH
679
A
HOH
1008
6
HOH
HOH
680
A
HOH
1177
6
HOH
HOH
681
A
HOH
1217
6
HOH
HOH
682
A
HOH
1029
6
HOH
HOH
683
A
HOH
1022
6
HOH
HOH
684
A
HOH
1110
6
HOH
HOH
685
A
HOH
1198
6
HOH
HOH
686
A
HOH
1165
6
HOH
HOH
687
A
HOH
1239
6
HOH
HOH
688
A
HOH
1035
6
HOH
HOH
689
A
HOH
1056
6
HOH
HOH
690
A
HOH
1062
6
HOH
HOH
691
A
HOH
1134
6
HOH
HOH
692
A
HOH
1060
6
HOH
HOH
693
A
HOH
1194
6
HOH
HOH
694
A
HOH
1154
6
HOH
HOH
695
A
HOH
1067
6
HOH
HOH
696
A
HOH
1192
6
HOH
HOH
697
A
HOH
1191
6
HOH
HOH
698
A
HOH
1076
6
HOH
HOH
699
A
HOH
1231
6
HOH
HOH
700
A
HOH
1120
6
HOH
HOH
701
A
HOH
1147
6
HOH
HOH
702
A
HOH
1157
6
HOH
HOH
703
A
HOH
1117
6
HOH
HOH
704
A
HOH
1232
6
HOH
HOH
705
A
HOH
1166
6
HOH
HOH
706
A
HOH
1071
6
HOH
HOH
707
A
HOH
1175
6
HOH
HOH
708
A
HOH
1126
6
HOH
HOH
709
A
HOH
1181
6
HOH
HOH
710
A
HOH
1169
6
HOH
HOH
711
A
HOH
1186
6
HOH
HOH
712
A
HOH
1259
6
HOH
HOH
713
A
HOH
1180
6
HOH
HOH
714
A
HOH
1119
6
HOH
HOH
715
A
HOH
1252
6
HOH
HOH
716
A
HOH
1207
6
HOH
HOH
301
B
HOH
1197
6
HOH
HOH
302
B
HOH
1045
6
HOH
HOH
303
B
HOH
1133
6
HOH
HOH
304
B
HOH
1129
6
HOH
HOH
305
B
HOH
1257
6
HOH
HOH
306
B
HOH
1183
6
HOH
HOH
307
B
HOH
1001
6
HOH
HOH
308
B
HOH
1143
6
HOH
HOH
309
B
HOH
1105
6
HOH
HOH
310
B
HOH
1028
6
HOH
HOH
311
B
HOH
1097
6
HOH
HOH
312
B
HOH
1205
6
HOH
HOH
313
B
HOH
1171
6
HOH
HOH
314
B
HOH
1108
6
HOH
HOH
315
B
HOH
1014
6
HOH
HOH
316
B
HOH
1103
6
HOH
HOH
317
B
HOH
1146
6
HOH
HOH
318
B
HOH
1095
6
HOH
HOH
319
B
HOH
1109
6
HOH
HOH
320
B
HOH
1093
6
HOH
HOH
321
B
HOH
1020
6
HOH
HOH
322
B
HOH
1160
6
HOH
HOH
323
B
HOH
1094
6
HOH
HOH
324
B
HOH
1019
6
HOH
HOH
325
B
HOH
1051
6
HOH
HOH
326
B
HOH
1042
6
HOH
HOH
327
B
HOH
1137
6
HOH
HOH
328
B
HOH
1013
6
HOH
HOH
329
B
HOH
1139
6
HOH
HOH
330
B
HOH
1261
6
HOH
HOH
331
B
HOH
1256
6
HOH
HOH
332
B
HOH
1196
6
HOH
HOH
333
B
HOH
1202
6
HOH
HOH
334
B
HOH
1075
6
HOH
HOH
335
B
HOH
1059
6
HOH
HOH
336
B
HOH
1227
6
HOH
HOH
337
B
HOH
1201
6
HOH
HOH
338
B
HOH
1058
6
HOH
HOH
339
B
HOH
1087
6
HOH
HOH
340
B
HOH
1041
6
HOH
HOH
341
B
HOH
1016
6
HOH
HOH
342
B
HOH
1025
6
HOH
HOH
343
B
HOH
1004
6
HOH
HOH
344
B
HOH
1235
6
HOH
HOH
345
B
HOH
1036
6
HOH
HOH
346
B
HOH
1206
6
HOH
HOH
347
B
HOH
1006
6
HOH
HOH
348
B
HOH
1068
6
HOH
HOH
349
B
HOH
1236
6
HOH
HOH
350
B
HOH
1242
6
HOH
HOH
351
B
HOH
1010
6
HOH
HOH
352
B
HOH
1226
6
HOH
HOH
353
B
HOH
1052
6
HOH
HOH
354
B
HOH
1122
6
HOH
HOH
355
B
HOH
1064
6
HOH
HOH
356
B
HOH
1086
6
HOH
HOH
357
B
HOH
1203
6
HOH
HOH
358
B
HOH
1116
6
HOH
HOH
359
B
HOH
1123
6
HOH
HOH
360
B
HOH
1003
6
HOH
HOH
361
B
HOH
1141
6
HOH
HOH
362
B
HOH
1250
6
HOH
HOH
363
B
HOH
1144
6
HOH
HOH
364
B
HOH
1246
6
HOH
HOH
365
B
HOH
1005
6
HOH
HOH
366
B
HOH
1158
6
HOH
HOH
367
B
HOH
1264
6
HOH
HOH
368
B
HOH
1079
6
HOH
HOH
369
B
HOH
1078
6
HOH
HOH
370
B
HOH
1178
6
HOH
HOH
371
B
HOH
1047
6
HOH
HOH
372
B
HOH
1254
6
HOH
HOH
373
B
HOH
1102
6
HOH
HOH
374
B
HOH
1055
6
HOH
HOH
375
B
HOH
1185
6
HOH
HOH
376
B
HOH
1164
6
HOH
HOH
377
B
HOH
1211
6
HOH
HOH
378
B
HOH
1124
6
HOH
HOH
379
B
HOH
1070
6
HOH
HOH
380
B
HOH
1113
6
HOH
HOH
381
B
HOH
1114
6
HOH
HOH
382
B
HOH
1054
6
HOH
HOH
383
B
HOH
1092
6
HOH
HOH
384
B
HOH
1081
6
HOH
HOH
385
B
HOH
1017
6
HOH
HOH
386
B
HOH
1061
6
HOH
HOH
387
B
HOH
1032
6
HOH
HOH
388
B
HOH
1214
6
HOH
HOH
389
B
HOH
1145
6
HOH
HOH
390
B
HOH
1200
6
HOH
HOH
391
B
HOH
1048
6
HOH
HOH
392
B
HOH
1026
6
HOH
HOH
393
B
HOH
1223
6
HOH
HOH
394
B
HOH
1096
6
HOH
HOH
395
B
HOH
1023
6
HOH
HOH
396
B
HOH
1027
6
HOH
HOH
397
B
HOH
1011
6
HOH
HOH
398
B
HOH
1170
6
HOH
HOH
399
B
HOH
1228
6
HOH
HOH
400
B
HOH
1167
6
HOH
HOH
401
B
HOH
1072
6
HOH
HOH
402
B
HOH
1172
6
HOH
HOH
403
B
HOH
1212
6
HOH
HOH
404
B
HOH
1135
6
HOH
HOH
405
B
HOH
1199
6
HOH
HOH
406
B
HOH
1213
6
HOH
HOH
407
B
HOH
1184
6
HOH
HOH
408
B
HOH
1050
6
HOH
HOH
409
B
HOH
1098
6
HOH
HOH
410
B
HOH
1038
6
HOH
HOH
411
B
HOH
1107
6
HOH
HOH
412
B
HOH
1190
6
HOH
HOH
413
B
HOH
1193
6
HOH
HOH
414
B
HOH
1088
6
HOH
HOH
415
B
HOH
1188
6
HOH
HOH
416
B
HOH
1262
6
HOH
HOH
417
B
HOH
1065
6
HOH
HOH
418
B
HOH
1138
6
HOH
HOH
419
B
HOH
1253
6
HOH
HOH
420
B
HOH
1258
6
HOH
HOH
421
B
HOH
1153
6
HOH
HOH
422
B
HOH
1130
6
HOH
HOH
423
B
HOH
1066
6
HOH
HOH
424
B
HOH
1149
6
HOH
HOH
425
B
HOH
1063
6
HOH
HOH
426
B
HOH
1224
6
HOH
HOH
427
B
HOH
1204
6
HOH
HOH
428
B
HOH
1249
6
HOH
HOH
429
B
HOH
1229
6
HOH
HOH
430
B
HOH
1128
6
HOH
HOH
431
B
HOH
1210
6
HOH
HOH
432
B
HOH
1043
6
HOH
HOH
433
B
HOH
1161
6
HOH
HOH
434
B
HOH
1176
6
HOH
HOH
435
B
HOH
1182
6
HOH
HOH
436
B
HOH
1209
6
HOH
HOH
437
B
HOH
1132
6
HOH
HOH
438
B
HOH
1237
6
HOH
HOH
439
B
HOH
1162
6
HOH
HOH
440
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
ALA
95
n
95
ALA
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
LYS
7
n
7
LYS
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
ILE
33
n
33
ILE
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
SER
37
n
37
SER
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ARG
41
n
41
ARG
41
B
TRP
42
n
42
TRP
42
B
LYS
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
LYS
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
ILE
63
n
63
ILE
63
B
ILE
64
n
64
ILE
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
ALA
67
n
67
ALA
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
LYS
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
ALA
95
n
95
ALA
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
0.1197
0.1310
0.1183
0.1297
0.1436
0.1545
3641
4237
5.0
5.0
72070
author_and_software_defined_assembly
PISA
2
dimeric
5170
-76
9550
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
628
K
O
HOH
1_555
95.5
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
640
K
O
HOH
1_555
101.7
A
HOH
628
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
640
K
O
HOH
1_555
77.8
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
642
K
O
HOH
1_555
92.6
A
HOH
628
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
642
K
O
HOH
1_555
89.5
A
HOH
640
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
642
K
O
HOH
1_555
161.6
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
656
K
O
HOH
1_555
77.2
A
HOH
628
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
656
K
O
HOH
1_555
172.4
A
HOH
640
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
656
K
O
HOH
1_555
101.5
A
HOH
642
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
656
K
O
HOH
1_555
92.9
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
691
K
O
HOH
1_555
169.2
A
HOH
628
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
691
K
O
HOH
1_555
88.5
A
HOH
640
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
691
K
O
HOH
1_555
89.0
A
HOH
642
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
691
K
O
HOH
1_555
77.4
A
HOH
656
K
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
691
K
O
HOH
1_555
99.0
B
ASP
60
B
O
ASP
60
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
327
L
O
HOH
1_555
111.3
B
ASP
60
B
O
ASP
60
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
337
A
L
O
HOH
1_555
98.6
B
HOH
327
L
O
HOH
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
337
A
L
O
HOH
1_555
73.5
B
ASP
60
B
O
ASP
60
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
381
L
O
HOH
1_555
72.0
B
HOH
327
L
O
HOH
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
381
L
O
HOH
1_555
104.7
B
HOH
337
A
L
O
HOH
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
381
L
O
HOH
1_555
169.3
B
ASP
60
B
O
ASP
60
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
414
L
O
HOH
1_555
96.2
B
HOH
327
L
O
HOH
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
414
L
O
HOH
1_555
139.3
B
HOH
337
A
L
O
HOH
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
414
L
O
HOH
1_555
73.1
B
HOH
381
L
O
HOH
1_555
B
NA
202
G
NA
NA
1_555
B
HOH
414
L
O
HOH
1_555
112.2
B
HOH
307
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
314
L
O
HOH
1_555
97.2
B
HOH
307
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
320
L
O
HOH
1_555
91.6
B
HOH
314
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
320
L
O
HOH
1_555
170.4
B
HOH
307
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
331
L
O
HOH
1_555
84.9
B
HOH
314
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
331
L
O
HOH
1_555
89.0
B
HOH
320
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
331
L
O
HOH
1_555
88.1
B
HOH
307
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
408
L
O
HOH
1_555
170.9
B
HOH
314
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
408
L
O
HOH
1_555
90.3
B
HOH
320
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
408
L
O
HOH
1_555
80.6
B
HOH
331
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
408
L
O
HOH
1_555
90.1
B
HOH
307
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
436
L
O
HOH
1_555
90.2
B
HOH
314
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
436
L
O
HOH
1_555
95.3
B
HOH
320
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
436
L
O
HOH
1_555
88.3
B
HOH
331
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
436
L
O
HOH
1_555
173.8
B
HOH
408
L
O
HOH
1_555
B
NA
203
H
NA
NA
1_555
B
HOH
436
L
O
HOH
1_555
94.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
THR
96
B
O
THR
96
A
N
ASN
98
A
N
ASN
98
A
N
LEU
97
A
N
LEU
97
B
O
ILE
3
B
O
ILE
3
A
N
LYS
43
A
N
LYS
43
A
O
GLN
58
A
O
GLN
58
A
N
ILE
66
A
N
ILE
66
A
O
HIS
69
A
O
HIS
69
A
O
LEU
76
A
O
LEU
76
A
N
ILE
33
A
N
ILE
33
A
N
VAL
32
A
N
VAL
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
43
B
N
LYS
43
B
O
GLN
58
B
O
GLN
58
B
N
ILE
66
B
N
ILE
66
B
O
HIS
69
B
O
HIS
69
B
O
LEU
76
B
O
LEU
76
B
N
ILE
33
B
N
ILE
33
B
N
VAL
32
B
N
VAL
32
B
O
ILE
84
B
O
ILE
84
B
O
ILE
85
B
O
ILE
85
B
N
LEU
23
B
N
LEU
23
B
O
LYS
20
B
O
LYS
20
B
N
ILE
13
B
N
ILE
13
B
N
LYS
14
B
N
LYS
14
B
O
GLU
65
B
O
GLU
65
1
10.63
1.40
123.60
134.23
A
A
A
CD
NE
CZ
ARG
ARG
ARG
57
57
57
A
A
A
N
1
6.00
0.90
118.30
124.30
B
B
B
CB
CG
OD2
ASP
ASP
ASP
25
25
25
N
1
3.20
0.50
120.30
123.50
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
87
87
87
N
1
B
PRO
79
B
-67.89
72.57
ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?
0.1545
0.1297
0.1310
0.1310
1.11
50
18363
4237
84574
84629
24842
5.0
91.7
RANDOM
1
FREE R-VALUE
0.0
MOLECULAR REPLACEMENT
3DJK
ENGH AND HUBER
71
1645.00
1756.25
1.11
50
268
1829
49
0
1512
0.015
0.032
0.000
0.0359
0.083
0.083
0.031
0.005
0.048
0.083
1.11
50
4ZIP
668849
84629
0.067
1
18.8
4.9
91.8
0.296
1.11
1.15
3.1
1
2.5
52.1
data reduction
HKL-2000
data scaling
HKL-2000
phasing
MOLREP
refinement
SHELXL-97
data reduction
HKL-2000
data scaling
HKL-2000
HIV-1 wild Type protease with GRL-0648A (a isophthalamide-derived P2-Ligand)
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
2
N
N
2
N
N
3
N
N
3
N
N
6
N
N
6
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
AA1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
AA2
3
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
AA3
6
metalc
2.353
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
metalc
2.402
A
NA
501
C
NA
NA
1_555
A
HOH
628
K
O
HOH
1_555
metalc
2.333
A
NA
501
C
NA
NA
1_555
A
HOH
640
K
O
HOH
1_555
metalc
2.353
A
NA
501
C
NA
NA
1_555
A
HOH
642
K
O
HOH
1_555
metalc
2.398
A
NA
501
C
NA
NA
1_555
A
HOH
656
K
O
HOH
1_555
metalc
2.724
A
NA
501
C
NA
NA
1_555
A
HOH
691
K
O
HOH
1_555
metalc
2.443
B
ASP
60
B
O
ASP
60
1_555
B
NA
202
G
NA
NA
1_555
metalc
2.377
B
NA
202
G
NA
NA
1_555
B
HOH
327
L
O
HOH
1_555
metalc
2.697
A
B
NA
202
G
NA
NA
1_555
B
HOH
337
L
O
HOH
1_555
metalc
2.668
B
NA
202
G
NA
NA
1_555
B
HOH
381
L
O
HOH
1_555
metalc
2.434
B
NA
202
G
NA
NA
1_555
B
HOH
414
L
O
HOH
1_555
metalc
2.269
B
NA
203
H
NA
NA
1_555
B
HOH
307
L
O
HOH
1_555
metalc
2.270
B
NA
203
H
NA
NA
1_555
B
HOH
314
L
O
HOH
1_555
metalc
2.757
B
NA
203
H
NA
NA
1_555
B
HOH
320
L
O
HOH
1_555
metalc
2.385
B
NA
203
H
NA
NA
1_555
B
HOH
331
L
O
HOH
1_555
metalc
2.371
B
NA
203
H
NA
NA
1_555
B
HOH
408
L
O
HOH
1_555
metalc
2.573
B
NA
203
H
NA
NA
1_555
B
HOH
436
L
O
HOH
1_555
HYDROLASE/HYDROLASE Inhibitor
HYDROLASE-HYDROLASE Inhibitor complex
POL_HV1B1
UNP
1
501
P03366
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
501
599
4ZIP
1
99
P03366
A
1
1
99
501
599
4ZIP
1
99
P03366
B
1
1
99
1
GLN
engineered mutation
LYS
7
4ZIP
A
P03366
UNP
507
7
1
LEU
engineered mutation
ILE
33
4ZIP
A
P03366
UNP
533
33
1
LEU
engineered mutation
ILE
63
4ZIP
A
P03366
UNP
563
63
1
CYS
engineered mutation
ALA
67
4ZIP
A
P03366
UNP
567
67
1
CYS
engineered mutation
ALA
95
4ZIP
A
P03366
UNP
595
95
2
GLN
engineered mutation
LYS
7
4ZIP
B
P03366
UNP
507
7
2
LEU
engineered mutation
ILE
33
4ZIP
B
P03366
UNP
533
33
2
LEU
engineered mutation
ILE
63
4ZIP
B
P03366
UNP
563
63
2
CYS
engineered mutation
ALA
67
4ZIP
B
P03366
UNP
567
67
2
CYS
engineered mutation
ALA
95
4ZIP
B
P03366
UNP
595
95
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
ILE
3
B
ILE
3
A
TRP
42
A
TRP
42
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
THR
31
A
THR
31
A
ILE
33
A
ILE
33
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
VAL
32
B
VAL
32
B
ILE
33
B
ILE
33
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
binding site for residue NA A 501
A
NA
501
Software
6
binding site for residue CL A 502
A
CL
502
Software
3
binding site for residue GOL A 503
A
GOL
503
Software
9
binding site for residue G64 B 201
B
G64
201
Software
36
binding site for residue NA B 202
B
NA
202
Software
5
binding site for residue NA B 203
B
NA
203
Software
6
binding site for residue CL B 204
B
CL
204
Software
1
binding site for residue CL B 205
B
CL
205
Software
4
A
ASP
60
A
ASP
60
6
1_555
A
HOH
628
K
HOH
6
1_555
A
HOH
640
K
HOH
6
1_555
A
HOH
642
K
HOH
6
1_555
A
HOH
656
K
HOH
6
1_555
A
HOH
691
K
HOH
6
1_555
A
THR
74
A
THR
74
3
1_555
A
ASN
88
A
ASN
88
3
1_555
B
ARG
41
B
ARG
41
3
3_556
A
THR
4
A
THR
4
9
1_555
A
LEU
5
A
LEU
5
9
1_555
A
GLY
52
A
GLY
52
9
4_456
A
HOH
618
K
HOH
9
1_555
A
HOH
627
K
HOH
9
1_555
B
THR
91
B
THR
91
9
1_555
B
ALA
95
B
ALA
95
9
1_555
B
HOH
345
L
HOH
9
1_555
B
HOH
360
L
HOH
9
1_555
A
ARG
8
A
ARG
8
36
1_555
A
LEU
23
A
LEU
23
36
1_555
A
ASP
25
A
ASP
25
36
1_555
A
GLY
27
A
GLY
27
36
1_555
A
ALA
28
A
ALA
28
36
1_555
A
ASP
29
A
ASP
29
36
1_555
A
ASP
30
A
ASP
30
36
1_555
A
VAL
32
A
VAL
32
36
1_555
A
GLY
48
A
GLY
48
36
1_555
A
GLY
49
A
GLY
49
36
1_555
A
ILE
50
A
ILE
50
36
1_555
A
VAL
82
A
VAL
82
36
1_555
A
ILE
84
A
ILE
84
36
1_555
A
HOH
647
K
HOH
36
1_555
B
ARG
8
B
ARG
8
36
1_555
B
ASP
25
B
ASP
25
36
1_555
B
GLY
27
B
GLY
27
36
1_555
B
ALA
28
B
ALA
28
36
1_555
B
ASP
29
B
ASP
29
36
1_555
B
ASP
30
B
ASP
30
36
1_555
B
VAL
32
B
VAL
32
36
1_555
B
ILE
47
B
ILE
47
36
1_555
B
GLY
48
B
GLY
48
36
1_555
B
GLY
49
B
GLY
49
36
1_555
B
ILE
50
B
ILE
50
36
1_555
B
PRO
81
B
PRO
81
36
1_555
B
VAL
82
B
VAL
82
36
1_555
B
ILE
84
B
ILE
84
36
1_555
B
HOH
302
L
HOH
36
1_555
B
HOH
308
L
HOH
36
1_555
B
HOH
310
L
HOH
36
1_555
B
HOH
342
L
HOH
36
1_555
B
HOH
391
L
HOH
36
1_555
B
HOH
406
L
HOH
36
1_555
B
HOH
407
L
HOH
36
1_555
B
HOH
410
L
HOH
36
1_555
B
ASP
60
B
ASP
60
5
1_555
B
HOH
327
L
HOH
5
1_555
B
HOH
337
L
HOH
5
1_555
B
HOH
381
L
HOH
5
1_555
B
HOH
414
L
HOH
5
1_555
B
HOH
307
L
HOH
6
1_555
B
HOH
314
L
HOH
6
1_555
B
HOH
320
L
HOH
6
1_555
B
HOH
331
L
HOH
6
1_555
B
HOH
408
L
HOH
6
1_555
B
HOH
436
L
HOH
6
1_555
B
TRP
6
B
TRP
6
1
1_555
B
THR
74
B
THR
74
4
1_555
B
ASN
88
B
ASN
88
4
1_555
B
HOH
329
L
HOH
4
1_555
B
HOH
417
L
HOH
4
1_555
18
P 21 21 2