0.015623 0.000000 0.000000 0.000000 0.015623 0.000000 0.000000 0.000000 0.008923 0.00000 0.00000 0.00000 Rochel, N. Krezel, W. Ruhl, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 64.010 64.010 112.070 C20 H36 O2 308.499 (5S,6S,9R,13R)-2,3-didehydro-5,6,7,8,9,10,11,12,13,14-decahydroretinoic acid 9-cis-13,14-dihydroretinoic acid non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N C N 3 N C N 4 N C N 5 S C N 6 S C N 7 N C N 8 N C N 9 R C N 10 N C N 11 N C N 12 N C N 13 R C N 14 N C N 15 N C N 16 N C N 17 N C N 18 N C N 19 N C N 20 N C N 21 N O N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N N N 60 S C N 61 N C N 62 N O N 63 N C N 64 N O N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N N N 73 S C N 74 N C N 75 N O N 76 N C N 77 N C N 78 N C N 79 N N N 80 N C N 81 N N N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 S C N 101 N C N 102 N O N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 S C N 118 N C N 119 N O N 120 N C N 121 N C N 122 N O N 123 N O N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 R C N 134 N C N 135 N O N 136 N C N 137 N S N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C N 151 N C N 152 N C N 153 N O N 154 N N N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N O N 174 N O N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 N C N 187 N C N 188 N O N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C Y 200 N C Y 201 N N Y 202 N C Y 203 N C Y 204 N N N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N O N 217 N H N 218 N H N 219 N N N 220 S C N 221 N C N 222 N O N 223 S C N 224 N C N 225 N C N 226 N C N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 N C N 246 N C N 247 N C N 248 N C N 249 N O N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C N 268 N C N 269 N C N 270 N C N 271 N N N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N C N 294 N S N 295 N C N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N O N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 R C N 367 N O N 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N N Y 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N C N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C Y 411 N C Y 412 N C Y 413 N C Y 414 N C Y 415 N C Y 416 N C N 417 N O N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N N N 431 S C N 432 N C N 433 N O N 434 N C N 435 N C N 436 N C N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing Y 198 N sing Y 199 N doub Y 200 N doub N 201 N sing Y 202 N sing N 203 N sing Y 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing Y 306 N doub Y 307 N sing Y 308 N sing N 309 N sing Y 310 N doub N 311 N sing Y 312 N doub N 313 N sing Y 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N doub Y 380 N sing Y 381 N sing N 382 N sing Y 383 N sing Y 384 N doub N 385 N sing Y 386 N doub N 387 N sing Y 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing US Plos Genet. 1553-7404 11 e1005213 e1005213 10.1371/journal.pgen.1005213 26030625 9-cis-13,14-Dihydroretinoic Acid Is an Endogenous Retinoid Acting as RXR Ligand in Mice. 2015 10.2210/pdb4zsh/pdb pdb_00004zsh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 27 February 2013 1 PIXEL 2013-02-27 DECTRIS PILATUS 200K SINGLE WAVELENGTH M x-ray 1 0.97625 1.0 ID29 ESRF 0.97625 SYNCHROTRON ESRF BEAMLINE ID29 Ligand binding domain 26856.039 Retinoic acid receptor RXR-alpha residues 223 - 462 1 man polymer 1579.866 NCoA2 peptide residues 471 - 483 1 syn polymer 308.499 (5S,6S,9R,13R)-2,3-didehydro-5,6,7,8,9,10,11,12,13,14-decahydroretinoic acid 1 syn non-polymer 18.015 water 181 nat water Nuclear receptor subfamily 2 group B member 1,Retinoid X receptor alpha no no TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR AGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR AGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT A polypeptide(L) no no KHKILHRLLQDSS KHKILHRLLQDSS B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 240 RXRA, NR2B1 9606 Homo sapiens 866768 Escherichia coli 'BL21-Gold(DE3)pLysS AG' pLysS AG Biological sequence pET15b 2.02 39.06 VAPOR DIFFUSION, HANGING DROP PEG3350 18%, calcium acetate 50 mM 290 database_2 pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_assembly_prop pdbx_struct_oper_list chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Database references Derived calculations Data collection Refinement description 1 0 2016-03-30 1 1 2022-08-10 1 2 2024-01-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.oligomeric_details 1FBY contains the same protein with 9cis retinoic acid N RCSB Y PDBE 2015-05-13 REL REL 1 A O HOH 773 5.90 1 A O HOH 774 6.00 1 A O HOH 775 6.05 4XW (5S,6S,9R,13R)-2,3-didehydro-5,6,7,8,9,10,11,12,13,14-decahydroretinoic acid HOH water 9606 Homo sapiens sample 1 13 2ZXZ PDB experimental model REA 501 3 4XW 4XW 501 A HOH 7 4 HOH HOH 601 A HOH 158 4 HOH HOH 602 A HOH 126 4 HOH HOH 603 A HOH 113 4 HOH HOH 604 A HOH 137 4 HOH HOH 605 A HOH 103 4 HOH HOH 606 A HOH 76 4 HOH HOH 607 A HOH 117 4 HOH HOH 608 A HOH 15 4 HOH HOH 609 A HOH 136 4 HOH HOH 610 A HOH 8 4 HOH HOH 611 A HOH 94 4 HOH HOH 612 A HOH 171 4 HOH HOH 613 A HOH 74 4 HOH HOH 614 A HOH 49 4 HOH HOH 615 A HOH 163 4 HOH HOH 616 A HOH 96 4 HOH HOH 617 A HOH 134 4 HOH HOH 618 A HOH 131 4 HOH HOH 619 A HOH 82 4 HOH HOH 620 A HOH 42 4 HOH HOH 621 A HOH 98 4 HOH HOH 622 A HOH 95 4 HOH HOH 623 A HOH 130 4 HOH HOH 624 A HOH 119 4 HOH HOH 625 A HOH 45 4 HOH HOH 626 A HOH 51 4 HOH HOH 627 A HOH 88 4 HOH HOH 628 A HOH 99 4 HOH HOH 629 A HOH 47 4 HOH HOH 630 A HOH 100 4 HOH HOH 631 A HOH 48 4 HOH HOH 632 A HOH 2 4 HOH HOH 633 A HOH 25 4 HOH HOH 634 A HOH 109 4 HOH HOH 635 A HOH 62 4 HOH HOH 636 A HOH 60 4 HOH HOH 637 A HOH 14 4 HOH HOH 638 A HOH 80 4 HOH HOH 639 A HOH 46 4 HOH HOH 640 A HOH 52 4 HOH HOH 641 A HOH 50 4 HOH HOH 642 A HOH 35 4 HOH HOH 643 A HOH 161 4 HOH HOH 644 A HOH 16 4 HOH HOH 645 A HOH 111 4 HOH HOH 646 A HOH 11 4 HOH HOH 647 A HOH 156 4 HOH HOH 648 A HOH 54 4 HOH HOH 649 A HOH 78 4 HOH HOH 650 A HOH 3 4 HOH HOH 651 A HOH 6 4 HOH HOH 652 A HOH 162 4 HOH HOH 653 A HOH 140 4 HOH HOH 654 A HOH 10 4 HOH HOH 655 A HOH 68 4 HOH HOH 656 A HOH 128 4 HOH HOH 657 A HOH 79 4 HOH HOH 658 A HOH 127 4 HOH HOH 659 A HOH 43 4 HOH HOH 660 A HOH 67 4 HOH HOH 661 A HOH 116 4 HOH HOH 662 A HOH 120 4 HOH HOH 663 A HOH 123 4 HOH HOH 664 A HOH 91 4 HOH HOH 665 A HOH 104 4 HOH HOH 666 A HOH 70 4 HOH HOH 667 A HOH 73 4 HOH HOH 668 A HOH 9 4 HOH HOH 669 A HOH 56 4 HOH HOH 670 A HOH 93 4 HOH HOH 671 A HOH 21 4 HOH HOH 672 A HOH 38 4 HOH HOH 673 A HOH 165 4 HOH HOH 674 A HOH 177 4 HOH HOH 675 A HOH 55 4 HOH HOH 676 A HOH 72 4 HOH HOH 677 A HOH 118 4 HOH HOH 678 A HOH 39 4 HOH HOH 679 A HOH 22 4 HOH HOH 680 A HOH 24 4 HOH HOH 681 A HOH 77 4 HOH HOH 682 A HOH 148 4 HOH HOH 683 A HOH 141 4 HOH HOH 684 A HOH 4 4 HOH HOH 685 A HOH 19 4 HOH HOH 686 A HOH 114 4 HOH HOH 687 A HOH 17 4 HOH HOH 688 A HOH 89 4 HOH HOH 689 A HOH 33 4 HOH HOH 690 A HOH 28 4 HOH HOH 691 A HOH 81 4 HOH HOH 692 A HOH 145 4 HOH HOH 693 A HOH 1 4 HOH HOH 694 A HOH 168 4 HOH HOH 695 A HOH 178 4 HOH HOH 696 A HOH 32 4 HOH HOH 697 A HOH 179 4 HOH HOH 698 A HOH 27 4 HOH HOH 699 A HOH 40 4 HOH HOH 700 A HOH 13 4 HOH HOH 701 A HOH 90 4 HOH HOH 702 A HOH 36 4 HOH HOH 703 A HOH 122 4 HOH HOH 704 A HOH 59 4 HOH HOH 705 A HOH 57 4 HOH HOH 706 A HOH 87 4 HOH HOH 707 A HOH 20 4 HOH HOH 708 A HOH 83 4 HOH HOH 709 A HOH 31 4 HOH HOH 710 A HOH 86 4 HOH HOH 711 A HOH 92 4 HOH HOH 712 A HOH 175 4 HOH HOH 713 A HOH 105 4 HOH HOH 714 A HOH 106 4 HOH HOH 715 A HOH 5 4 HOH HOH 716 A HOH 26 4 HOH HOH 717 A HOH 44 4 HOH HOH 718 A HOH 75 4 HOH HOH 719 A HOH 18 4 HOH HOH 720 A HOH 149 4 HOH HOH 721 A HOH 23 4 HOH HOH 722 A HOH 152 4 HOH HOH 723 A HOH 85 4 HOH HOH 724 A HOH 129 4 HOH HOH 725 A HOH 30 4 HOH HOH 726 A HOH 12 4 HOH HOH 727 A HOH 157 4 HOH HOH 728 A HOH 58 4 HOH HOH 729 A HOH 97 4 HOH HOH 730 A HOH 146 4 HOH HOH 731 A HOH 84 4 HOH HOH 732 A HOH 53 4 HOH HOH 733 A HOH 124 4 HOH HOH 734 A HOH 115 4 HOH HOH 735 A HOH 101 4 HOH HOH 736 A HOH 135 4 HOH HOH 737 A HOH 71 4 HOH HOH 738 A HOH 29 4 HOH HOH 739 A HOH 153 4 HOH HOH 740 A HOH 66 4 HOH HOH 741 A HOH 160 4 HOH HOH 742 A HOH 41 4 HOH HOH 743 A HOH 108 4 HOH HOH 744 A HOH 34 4 HOH HOH 745 A HOH 138 4 HOH HOH 746 A HOH 133 4 HOH HOH 747 A HOH 155 4 HOH HOH 748 A HOH 159 4 HOH HOH 749 A HOH 69 4 HOH HOH 750 A HOH 173 4 HOH HOH 751 A HOH 139 4 HOH HOH 752 A HOH 125 4 HOH HOH 753 A HOH 64 4 HOH HOH 754 A HOH 61 4 HOH HOH 755 A HOH 181 4 HOH HOH 756 A HOH 150 4 HOH HOH 757 A HOH 147 4 HOH HOH 758 A HOH 110 4 HOH HOH 759 A HOH 142 4 HOH HOH 760 A HOH 37 4 HOH HOH 761 A HOH 143 4 HOH HOH 762 A HOH 180 4 HOH HOH 763 A HOH 121 4 HOH HOH 764 A HOH 169 4 HOH HOH 765 A HOH 112 4 HOH HOH 766 A HOH 151 4 HOH HOH 767 A HOH 164 4 HOH HOH 768 A HOH 65 4 HOH HOH 769 A HOH 102 4 HOH HOH 770 A HOH 63 4 HOH HOH 771 A HOH 172 4 HOH HOH 772 A HOH 167 4 HOH HOH 773 A HOH 154 4 HOH HOH 774 A HOH 170 4 HOH HOH 775 A HOH 144 4 HOH HOH 501 B HOH 176 4 HOH HOH 502 B HOH 174 4 HOH HOH 503 B HOH 132 4 HOH HOH 504 B HOH 166 4 HOH HOH 505 B HOH 107 4 HOH HOH 506 B n 1 223 A n 2 224 A n 3 225 A n 4 226 A n 5 227 A n 6 228 A ASP 229 n 7 ASP 229 A MET 230 n 8 MET 230 A PRO 231 n 9 PRO 231 A VAL 232 n 10 VAL 232 A GLU 233 n 11 GLU 233 A ARG 234 n 12 ARG 234 A ILE 235 n 13 ILE 235 A LEU 236 n 14 LEU 236 A GLU 237 n 15 GLU 237 A ALA 238 n 16 ALA 238 A GLU 239 n 17 GLU 239 A LEU 240 n 18 LEU 240 A ALA 241 n 19 ALA 241 A VAL 242 n 20 VAL 242 A GLU 243 n 21 GLU 243 A PRO 244 n 22 PRO 244 A n 23 245 A n 24 246 A n 25 247 A n 26 248 A n 27 249 A n 28 250 A n 29 251 A n 30 252 A n 31 253 A n 32 254 A n 33 255 A n 34 256 A n 35 257 A n 36 258 A n 37 259 A n 38 260 A n 39 261 A ASN 262 n 40 ASN 262 A ASP 263 n 41 ASP 263 A PRO 264 n 42 PRO 264 A VAL 265 n 43 VAL 265 A THR 266 n 44 THR 266 A ASN 267 n 45 ASN 267 A ILE 268 n 46 ILE 268 A CYS 269 n 47 CYS 269 A GLN 270 n 48 GLN 270 A ALA 271 n 49 ALA 271 A ALA 272 n 50 ALA 272 A ASP 273 n 51 ASP 273 A LYS 274 n 52 LYS 274 A GLN 275 n 53 GLN 275 A LEU 276 n 54 LEU 276 A PHE 277 n 55 PHE 277 A THR 278 n 56 THR 278 A LEU 279 n 57 LEU 279 A VAL 280 n 58 VAL 280 A GLU 281 n 59 GLU 281 A TRP 282 n 60 TRP 282 A ALA 283 n 61 ALA 283 A LYS 284 n 62 LYS 284 A ARG 285 n 63 ARG 285 A ILE 286 n 64 ILE 286 A PRO 287 n 65 PRO 287 A HIS 288 n 66 HIS 288 A PHE 289 n 67 PHE 289 A SER 290 n 68 SER 290 A GLU 291 n 69 GLU 291 A LEU 292 n 70 LEU 292 A PRO 293 n 71 PRO 293 A LEU 294 n 72 LEU 294 A ASP 295 n 73 ASP 295 A ASP 296 n 74 ASP 296 A GLN 297 n 75 GLN 297 A VAL 298 n 76 VAL 298 A ILE 299 n 77 ILE 299 A LEU 300 n 78 LEU 300 A LEU 301 n 79 LEU 301 A ARG 302 n 80 ARG 302 A ALA 303 n 81 ALA 303 A GLY 304 n 82 GLY 304 A TRP 305 n 83 TRP 305 A ASN 306 n 84 ASN 306 A GLU 307 n 85 GLU 307 A LEU 308 n 86 LEU 308 A LEU 309 n 87 LEU 309 A ILE 310 n 88 ILE 310 A ALA 311 n 89 ALA 311 A SER 312 n 90 SER 312 A PHE 313 n 91 PHE 313 A SER 314 n 92 SER 314 A HIS 315 n 93 HIS 315 A ARG 316 n 94 ARG 316 A SER 317 n 95 SER 317 A ILE 318 n 96 ILE 318 A ALA 319 n 97 ALA 319 A VAL 320 n 98 VAL 320 A LYS 321 n 99 LYS 321 A ASP 322 n 100 ASP 322 A GLY 323 n 101 GLY 323 A ILE 324 n 102 ILE 324 A LEU 325 n 103 LEU 325 A LEU 326 n 104 LEU 326 A ALA 327 n 105 ALA 327 A THR 328 n 106 THR 328 A GLY 329 n 107 GLY 329 A LEU 330 n 108 LEU 330 A HIS 331 n 109 HIS 331 A VAL 332 n 110 VAL 332 A HIS 333 n 111 HIS 333 A ARG 334 n 112 ARG 334 A ASN 335 n 113 ASN 335 A SER 336 n 114 SER 336 A ALA 337 n 115 ALA 337 A HIS 338 n 116 HIS 338 A SER 339 n 117 SER 339 A ALA 340 n 118 ALA 340 A GLY 341 n 119 GLY 341 A VAL 342 n 120 VAL 342 A GLY 343 n 121 GLY 343 A ALA 344 n 122 ALA 344 A ILE 345 n 123 ILE 345 A PHE 346 n 124 PHE 346 A ASP 347 n 125 ASP 347 A ARG 348 n 126 ARG 348 A VAL 349 n 127 VAL 349 A LEU 350 n 128 LEU 350 A THR 351 n 129 THR 351 A GLU 352 n 130 GLU 352 A LEU 353 n 131 LEU 353 A VAL 354 n 132 VAL 354 A SER 355 n 133 SER 355 A LYS 356 n 134 LYS 356 A MET 357 n 135 MET 357 A ARG 358 n 136 ARG 358 A ASP 359 n 137 ASP 359 A MET 360 n 138 MET 360 A GLN 361 n 139 GLN 361 A MET 362 n 140 MET 362 A ASP 363 n 141 ASP 363 A LYS 364 n 142 LYS 364 A THR 365 n 143 THR 365 A GLU 366 n 144 GLU 366 A LEU 367 n 145 LEU 367 A GLY 368 n 146 GLY 368 A CYS 369 n 147 CYS 369 A LEU 370 n 148 LEU 370 A ARG 371 n 149 ARG 371 A ALA 372 n 150 ALA 372 A ILE 373 n 151 ILE 373 A VAL 374 n 152 VAL 374 A LEU 375 n 153 LEU 375 A PHE 376 n 154 PHE 376 A ASN 377 n 155 ASN 377 A PRO 378 n 156 PRO 378 A ASP 379 n 157 ASP 379 A SER 380 n 158 SER 380 A LYS 381 n 159 LYS 381 A GLY 382 n 160 GLY 382 A LEU 383 n 161 LEU 383 A SER 384 n 162 SER 384 A ASN 385 n 163 ASN 385 A PRO 386 n 164 PRO 386 A ALA 387 n 165 ALA 387 A GLU 388 n 166 GLU 388 A VAL 389 n 167 VAL 389 A GLU 390 n 168 GLU 390 A ALA 391 n 169 ALA 391 A LEU 392 n 170 LEU 392 A ARG 393 n 171 ARG 393 A GLU 394 n 172 GLU 394 A LYS 395 n 173 LYS 395 A VAL 396 n 174 VAL 396 A TYR 397 n 175 TYR 397 A ALA 398 n 176 ALA 398 A SER 399 n 177 SER 399 A LEU 400 n 178 LEU 400 A GLU 401 n 179 GLU 401 A ALA 402 n 180 ALA 402 A TYR 403 n 181 TYR 403 A CYS 404 n 182 CYS 404 A LYS 405 n 183 LYS 405 A HIS 406 n 184 HIS 406 A LYS 407 n 185 LYS 407 A TYR 408 n 186 TYR 408 A PRO 409 n 187 PRO 409 A GLU 410 n 188 GLU 410 A GLN 411 n 189 GLN 411 A PRO 412 n 190 PRO 412 A GLY 413 n 191 GLY 413 A ARG 414 n 192 ARG 414 A PHE 415 n 193 PHE 415 A ALA 416 n 194 ALA 416 A LYS 417 n 195 LYS 417 A LEU 418 n 196 LEU 418 A LEU 419 n 197 LEU 419 A LEU 420 n 198 LEU 420 A ARG 421 n 199 ARG 421 A LEU 422 n 200 LEU 422 A PRO 423 n 201 PRO 423 A ALA 424 n 202 ALA 424 A LEU 425 n 203 LEU 425 A ARG 426 n 204 ARG 426 A SER 427 n 205 SER 427 A ILE 428 n 206 ILE 428 A GLY 429 n 207 GLY 429 A LEU 430 n 208 LEU 430 A LYS 431 n 209 LYS 431 A CYS 432 n 210 CYS 432 A LEU 433 n 211 LEU 433 A GLU 434 n 212 GLU 434 A HIS 435 n 213 HIS 435 A LEU 436 n 214 LEU 436 A PHE 437 n 215 PHE 437 A PHE 438 n 216 PHE 438 A PHE 439 n 217 PHE 439 A LYS 440 n 218 LYS 440 A LEU 441 n 219 LEU 441 A ILE 442 n 220 ILE 442 A GLY 443 n 221 GLY 443 A ASP 444 n 222 ASP 444 A THR 445 n 223 THR 445 A PRO 446 n 224 PRO 446 A ILE 447 n 225 ILE 447 A ASP 448 n 226 ASP 448 A THR 449 n 227 THR 449 A PHE 450 n 228 PHE 450 A LEU 451 n 229 LEU 451 A MET 452 n 230 MET 452 A GLU 453 n 231 GLU 453 A MET 454 n 232 MET 454 A LEU 455 n 233 LEU 455 A GLU 456 n 234 GLU 456 A ALA 457 n 235 ALA 457 A PRO 458 n 236 PRO 458 A n 237 459 A n 238 460 A n 239 461 A n 240 462 A LYS 471 n 1 LYS 471 B HIS 472 n 2 HIS 472 B LYS 473 n 3 LYS 473 B ILE 474 n 4 ILE 474 B LEU 475 n 5 LEU 475 B HIS 476 n 6 HIS 476 B ARG 477 n 7 ARG 477 B LEU 478 n 8 LEU 478 B LEU 479 n 9 LEU 479 B GLN 480 n 10 GLN 480 B ASP 481 n 11 ASP 481 B n 12 482 B n 13 483 B author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_775 -y+2,-x+2,-z+1/2 crystal symmetry operation 128.0200000000 128.0200000000 56.0350000000 A N ILE 324 A N ILE 102 A O VAL 332 A O VAL 110 1 A HOH 680 D HOH 1 A CG ARG 234 A CG ARG 12 0 Y 1 A CD ARG 234 A CD ARG 12 0 Y 1 A NE ARG 234 A NE ARG 12 0 Y 1 A CZ ARG 234 A CZ ARG 12 0 Y 1 A NH1 ARG 234 A NH1 ARG 12 0 Y 1 A NH2 ARG 234 A NH2 ARG 12 0 Y 1 A CD GLU 243 A CD GLU 21 0 Y 1 A OE1 GLU 243 A OE1 GLU 21 0 Y 1 A OE2 GLU 243 A OE2 GLU 21 0 Y 1 A C PRO 244 A C PRO 22 0 Y 1 A O PRO 244 A O PRO 22 0 Y 1 A CD LYS 321 A CD LYS 99 0 Y 1 A CE LYS 321 A CE LYS 99 0 Y 1 A NZ LYS 321 A NZ LYS 99 0 Y 1 A CD LYS 381 A CD LYS 159 0 Y 1 A CE LYS 381 A CE LYS 159 0 Y 1 A NZ LYS 381 A NZ LYS 159 0 Y 1 A CG GLU 456 A CG GLU 234 0 Y 1 A CD GLU 456 A CD GLU 234 0 Y 1 A OE1 GLU 456 A OE1 GLU 234 0 Y 1 A OE2 GLU 456 A OE2 GLU 234 0 Y 1 B CD LYS 471 B CD LYS 1 0 Y 1 B CE LYS 471 B CE LYS 1 0 Y 1 B NZ LYS 471 B NZ LYS 1 0 Y 1 A THR 223 A THR 1 1 Y 1 A SER 224 A SER 2 1 Y 1 A SER 225 A SER 3 1 Y 1 A ALA 226 A ALA 4 1 Y 1 A ASN 227 A ASN 5 1 Y 1 A GLU 228 A GLU 6 1 Y 1 A LYS 245 A LYS 23 1 Y 1 A THR 246 A THR 24 1 Y 1 A GLU 247 A GLU 25 1 Y 1 A THR 248 A THR 26 1 Y 1 A TYR 249 A TYR 27 1 Y 1 A VAL 250 A VAL 28 1 Y 1 A GLU 251 A GLU 29 1 Y 1 A ALA 252 A ALA 30 1 Y 1 A ASN 253 A ASN 31 1 Y 1 A MET 254 A MET 32 1 Y 1 A GLY 255 A GLY 33 1 Y 1 A LEU 256 A LEU 34 1 Y 1 A ASN 257 A ASN 35 1 Y 1 A PRO 258 A PRO 36 1 Y 1 A SER 259 A SER 37 1 Y 1 A SER 260 A SER 38 1 Y 1 A PRO 261 A PRO 39 1 Y 1 A HIS 459 A HIS 237 1 Y 1 A GLN 460 A GLN 238 1 Y 1 A MET 461 A MET 239 1 Y 1 A THR 462 A THR 240 1 Y 1 B SER 482 B SER 12 1 Y 1 B SER 483 B SER 13 1 Y 1 A A NZ O LYS HOH 381 601 2.07 1 B B NZ O LYS HOH 471 501 2.14 1 A A OD1 O ASN HOH 385 602 2.18 1 A A O O HOH HOH 628 731 2.19 1 7.32 0.50 120.30 127.62 A A A NE CZ NH1 ARG ARG ARG 421 421 421 N 1 -6.95 0.50 120.30 113.35 A A A NE CZ NH2 ARG ARG ARG 421 421 421 N 1 A A O O HOH HOH 771 772 2.18 1_555 8_775 1 A B O O HOH HOH 631 503 2.19 1_555 4_565 1 A HIS 288 77.30 -10.90 1 B HIS 472 -105.65 71.96 0.2180 0.2094 1.8 25 21351 95.7 ramdom selection 1 FREE R-VALUE MOLECULAR REPLACEMENT 2ZXZ 1.8 25 181 1981 22 0 1778 1.8 25 4ZSH 22407 0.05 1 31.2 7.2 99.2 1.80 1.86 0.481 1 3.8 97.2 refinement CNS data reduction HKL-2000 data scaling HKL-2000 phasing CNS RXR LBD in complex with 9-cis-13,14-dihydroretinoic acid 1 N N 2 N N 3 N N 4 N N 4 N N A PRO 231 A PRO 9 HELX_P A GLU 243 A GLU 21 1 AA1 13 A ASP 263 A ASP 41 HELX_P A ILE 286 A ILE 64 1 AA2 24 A PRO 293 A PRO 71 HELX_P A SER 317 A SER 95 1 AA3 25 A ARG 334 A ARG 112 HELX_P A ALA 340 A ALA 118 1 AA4 7 A VAL 342 A VAL 120 HELX_P A LEU 353 A LEU 131 1 AA5 12 A LEU 353 A LEU 131 HELX_P A GLN 361 A GLN 139 1 AA6 9 A ASP 363 A ASP 141 HELX_P A PHE 376 A PHE 154 1 AA7 14 A ASN 385 A ASN 163 HELX_P A TYR 408 A TYR 186 1 AA8 24 A GLY 413 A GLY 191 HELX_P A LEU 420 A LEU 198 1 AA9 8 A ARG 421 A ARG 199 HELX_P A GLY 443 A GLY 221 1 AB1 23 A ASP 448 A ASP 226 HELX_P A LEU 455 A LEU 233 1 AB2 8 B HIS 472 B HIS 2 HELX_P B GLN 480 B GLN 10 1 AB3 9 TRANSCRIPTION transcription, nuclear receptor, RXR A ALA 457 A ALA 235 1 A PRO 458 A PRO 236 -4.23 RXRA_HUMAN UNP 1 223 P19793 TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR AGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT 4ZSH PDB 2 1 4ZSH 223 462 4ZSH 223 462 P19793 A 1 1 240 471 483 4ZSH 471 483 4ZSH B 2 1 13 2 anti-parallel A GLY 323 A GLY 101 A LEU 325 A LEU 103 A HIS 331 A HIS 109 A HIS 333 A HIS 111 binding site for residue 4XW A 501 A 4XW 501 Software 9 A ILE 268 A ILE 46 9 1_555 A ALA 271 A ALA 49 9 1_555 A GLN 275 A GLN 53 9 1_555 A PHE 313 A PHE 91 9 1_555 A ARG 316 A ARG 94 9 1_555 A LEU 326 A LEU 104 9 1_555 A ALA 327 A ALA 105 9 1_555 A CYS 432 A CYS 210 9 1_555 A HOH 633 D HOH 9 1_555 96 P 43 21 2