0.018427
0.010639
0.000000
0.000000
0.021278
0.000000
0.000000
0.000000
0.004527
0.00000
0.00000
0.00000
Fillenberg, S.B.
Koerner, S.
Muller, Y.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
54.267
54.267
220.913
C6 H14 N O8 P
259.151
n
2-amino-2-deoxy-6-O-phosphono-beta-D-glucopyranose
beta-glucosamine-6-phosphate; 6-O-phosphono-beta-D-glucosamine; 2-amino-2-deoxy-6-O-phosphono-beta-D-glucose; 2-amino-2-deoxy-6-O-phosphono-D-glucose; 2-amino-2-deoxy-6-O-phosphono-glucose
D-saccharide, beta linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C6 H14 N O8 P
259.151
n
2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose
GLUCOSAMINE 6-PHOSPHATE; 6-O-phosphono-alpha-D-glucosamine; 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucose; 2-amino-2-deoxy-6-O-phosphono-D-glucose; 2-amino-2-deoxy-6-O-phosphono-glucose
D-saccharide, alpha linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
R
C
N
2
S
C
N
3
R
C
N
4
N
C
N
5
N
O
N
6
N
O
N
7
N
P
N
8
N
O
N
9
N
O
N
10
N
O
N
11
N
O
N
12
R
C
N
13
N
N
N
14
R
C
N
15
N
O
N
16
N
O
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
O
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
N
N
45
S
C
N
46
N
C
N
47
N
O
N
48
N
C
N
49
N
C
N
50
N
C
N
51
N
N
N
52
N
C
N
53
N
N
N
54
N
N
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
N
N
72
S
C
N
73
N
C
N
74
N
O
N
75
N
C
N
76
N
C
N
77
N
O
N
78
N
N
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
S
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
S
C
N
135
R
C
N
136
R
C
N
137
S
C
N
138
R
C
N
139
N
C
N
140
N
O
N
141
N
N
N
142
N
O
N
143
N
O
N
144
N
O
N
145
N
O
N
146
N
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
Y
198
N
C
Y
199
N
N
Y
200
N
C
Y
201
N
C
Y
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
S
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
N
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
S
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
O
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
R
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
N
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
N
433
N
C
N
434
N
C
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
Y
196
N
sing
Y
197
N
doub
Y
198
N
doub
N
199
N
sing
Y
200
N
sing
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
US
Plos One
1932-6203
11
e0157691
e0157691
10.1371/journal.pone.0157691
27337024
Crystal Structures of the Global Regulator DasR from Streptomyces coelicolor: Implications for the Allosteric Regulation of GntR/HutC Repressors.
2016
10.2210/pdb4zsi/pdb
pdb_00004zsi
100
1
CCD
2011-02-02
RAYONIX MX-225
Si-111 crystal
SINGLE WAVELENGTH
M
x-ray
1
0.91841
1.0
14.1
BESSY
0.91841
SYNCHROTRON
BESSY BEAMLINE 14.1
DasR-EBD comprises residues 88-254 of full-length DasR
19157.867
HTH-type transcriptional repressor DasR
UNP residues 88-254
2
man
polymer
259.151
2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose
1
man
non-polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
259.151
2-amino-2-deoxy-6-O-phosphono-beta-D-glucopyranose
1
syn
non-polymer
18.015
water
279
nat
water
no
no
GSHMKVSQALQLTSYTEDMRAQGLEPTSQLLDIGYITADDRLAGLLDITAGGRVLRIERLRMANGEPMAIETTHLSAKRF
PALRRSLVKYTSLYTALAEVYDVHLAEAEETIETSLATPREAGLLGTDVGLPMLMLSRHSQDRTGQPVEWVRSVYRGDRY
KFVARLKRPQD
GSHMKVSQALQLTSYTEDMRAQGLEPTSQLLDIGYITADDRLAGLLDITAGGRVLRIERLRMANGEPMAIETTHLSAKRF
PALRRSLVKYTSLYTALAEVYDVHLAEAEETIETSLATPREAGLLGTDVGLPMLMLSRHSQDRTGQPVEWVRSVYRGDRY
KFVARLKRPQD
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
171
dasR, SCO5231, SC7E4.28c
100226
Streptomyces coelicolor A3(2)
562
Escherichia coli
Biological sequence
2.45
49.81
VAPOR DIFFUSION, SITTING DROP
7.5
0.1 M potassium thiocyanate and 30 % (w/v) PEG monomethyl ether 2,000
292.15
chem_comp
entity
pdbx_audit_support
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Author supporting evidence
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2016-06-08
1
1
2016-07-13
1
2
2020-07-29
1
3
2024-01-10
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_audit_support.funding_organization
_pdbx_entity_nonpoly.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Germany
German Research Foundation
b-D-GlcpN6PO3
a-D-GlcpN6PO3
N
RCSB
Y
PDBE
2015-05-13
REL
REL
1
A
O
HOH
568
5.87
GLP
2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose
EDO
1,2-ETHANEDIOL
4R1
2-amino-2-deoxy-6-O-phosphono-beta-D-glucopyranose
HOH
water
2WV0
Effector-binding domain of entry 2wv0
PDB
experimental model
GLP
1
2
GLP
GLP
301
A
EDO
2
3
EDO
EDO
302
A
GPB
2
4
4R1
4R1
301
B
EDO
1
3
EDO
EDO
302
B
HOH
157
5
HOH
HOH
401
A
HOH
184
5
HOH
HOH
402
A
HOH
119
5
HOH
HOH
403
A
HOH
241
5
HOH
HOH
404
A
HOH
233
5
HOH
HOH
405
A
HOH
91
5
HOH
HOH
406
A
HOH
121
5
HOH
HOH
407
A
HOH
228
5
HOH
HOH
408
A
HOH
69
5
HOH
HOH
409
A
HOH
150
5
HOH
HOH
410
A
HOH
185
5
HOH
HOH
411
A
HOH
74
5
HOH
HOH
412
A
HOH
24
5
HOH
HOH
413
A
HOH
212
5
HOH
HOH
414
A
HOH
8
5
HOH
HOH
415
A
HOH
81
5
HOH
HOH
416
A
HOH
264
5
HOH
HOH
417
A
HOH
152
5
HOH
HOH
418
A
HOH
51
5
HOH
HOH
419
A
HOH
113
5
HOH
HOH
420
A
HOH
41
5
HOH
HOH
421
A
HOH
9
5
HOH
HOH
422
A
HOH
213
5
HOH
HOH
423
A
HOH
101
5
HOH
HOH
424
A
HOH
145
5
HOH
HOH
425
A
HOH
16
5
HOH
HOH
426
A
HOH
90
5
HOH
HOH
427
A
HOH
85
5
HOH
HOH
428
A
HOH
210
5
HOH
HOH
429
A
HOH
55
5
HOH
HOH
430
A
HOH
235
5
HOH
HOH
431
A
HOH
89
5
HOH
HOH
432
A
HOH
25
5
HOH
HOH
433
A
HOH
141
5
HOH
HOH
434
A
HOH
243
5
HOH
HOH
435
A
HOH
194
5
HOH
HOH
436
A
HOH
45
5
HOH
HOH
437
A
HOH
21
5
HOH
HOH
438
A
HOH
52
5
HOH
HOH
439
A
HOH
110
5
HOH
HOH
440
A
HOH
19
5
HOH
HOH
441
A
HOH
221
5
HOH
HOH
442
A
HOH
122
5
HOH
HOH
443
A
HOH
27
5
HOH
HOH
444
A
HOH
153
5
HOH
HOH
445
A
HOH
100
5
HOH
HOH
446
A
HOH
63
5
HOH
HOH
447
A
HOH
274
5
HOH
HOH
448
A
HOH
166
5
HOH
HOH
449
A
HOH
97
5
HOH
HOH
450
A
HOH
132
5
HOH
HOH
451
A
HOH
200
5
HOH
HOH
452
A
HOH
186
5
HOH
HOH
453
A
HOH
159
5
HOH
HOH
454
A
HOH
4
5
HOH
HOH
455
A
HOH
187
5
HOH
HOH
456
A
HOH
137
5
HOH
HOH
457
A
HOH
108
5
HOH
HOH
458
A
HOH
96
5
HOH
HOH
459
A
HOH
18
5
HOH
HOH
460
A
HOH
92
5
HOH
HOH
461
A
HOH
172
5
HOH
HOH
462
A
HOH
22
5
HOH
HOH
463
A
HOH
60
5
HOH
HOH
464
A
HOH
33
5
HOH
HOH
465
A
HOH
83
5
HOH
HOH
466
A
HOH
14
5
HOH
HOH
467
A
HOH
98
5
HOH
HOH
468
A
HOH
26
5
HOH
HOH
469
A
HOH
123
5
HOH
HOH
470
A
HOH
86
5
HOH
HOH
471
A
HOH
144
5
HOH
HOH
472
A
HOH
263
5
HOH
HOH
473
A
HOH
73
5
HOH
HOH
474
A
HOH
193
5
HOH
HOH
475
A
HOH
232
5
HOH
HOH
476
A
HOH
84
5
HOH
HOH
477
A
HOH
30
5
HOH
HOH
478
A
HOH
13
5
HOH
HOH
479
A
HOH
59
5
HOH
HOH
480
A
HOH
136
5
HOH
HOH
481
A
HOH
192
5
HOH
HOH
482
A
HOH
78
5
HOH
HOH
483
A
HOH
216
5
HOH
HOH
484
A
HOH
37
5
HOH
HOH
485
A
HOH
230
5
HOH
HOH
486
A
HOH
87
5
HOH
HOH
487
A
HOH
2
5
HOH
HOH
488
A
HOH
61
5
HOH
HOH
489
A
HOH
64
5
HOH
HOH
490
A
HOH
161
5
HOH
HOH
491
A
HOH
270
5
HOH
HOH
492
A
HOH
71
5
HOH
HOH
493
A
HOH
7
5
HOH
HOH
494
A
HOH
29
5
HOH
HOH
495
A
HOH
201
5
HOH
HOH
496
A
HOH
112
5
HOH
HOH
497
A
HOH
94
5
HOH
HOH
498
A
HOH
79
5
HOH
HOH
499
A
HOH
65
5
HOH
HOH
500
A
HOH
222
5
HOH
HOH
501
A
HOH
11
5
HOH
HOH
502
A
HOH
42
5
HOH
HOH
503
A
HOH
163
5
HOH
HOH
504
A
HOH
76
5
HOH
HOH
505
A
HOH
120
5
HOH
HOH
506
A
HOH
154
5
HOH
HOH
507
A
HOH
77
5
HOH
HOH
508
A
HOH
151
5
HOH
HOH
509
A
HOH
75
5
HOH
HOH
510
A
HOH
197
5
HOH
HOH
511
A
HOH
239
5
HOH
HOH
512
A
HOH
277
5
HOH
HOH
513
A
HOH
248
5
HOH
HOH
514
A
HOH
242
5
HOH
HOH
515
A
HOH
278
5
HOH
HOH
516
A
HOH
54
5
HOH
HOH
517
A
HOH
88
5
HOH
HOH
518
A
HOH
50
5
HOH
HOH
519
A
HOH
138
5
HOH
HOH
520
A
HOH
128
5
HOH
HOH
521
A
HOH
170
5
HOH
HOH
522
A
HOH
271
5
HOH
HOH
523
A
HOH
93
5
HOH
HOH
524
A
HOH
198
5
HOH
HOH
525
A
HOH
231
5
HOH
HOH
526
A
HOH
234
5
HOH
HOH
527
A
HOH
173
5
HOH
HOH
528
A
HOH
117
5
HOH
HOH
529
A
HOH
223
5
HOH
HOH
530
A
HOH
279
5
HOH
HOH
531
A
HOH
5
5
HOH
HOH
532
A
HOH
208
5
HOH
HOH
533
A
HOH
254
5
HOH
HOH
534
A
HOH
237
5
HOH
HOH
535
A
HOH
218
5
HOH
HOH
536
A
HOH
162
5
HOH
HOH
537
A
HOH
188
5
HOH
HOH
538
A
HOH
247
5
HOH
HOH
539
A
HOH
107
5
HOH
HOH
540
A
HOH
158
5
HOH
HOH
541
A
HOH
206
5
HOH
HOH
542
A
HOH
49
5
HOH
HOH
543
A
HOH
168
5
HOH
HOH
544
A
HOH
182
5
HOH
HOH
545
A
HOH
225
5
HOH
HOH
546
A
HOH
217
5
HOH
HOH
547
A
HOH
267
5
HOH
HOH
548
A
HOH
47
5
HOH
HOH
549
A
HOH
209
5
HOH
HOH
550
A
HOH
215
5
HOH
HOH
551
A
HOH
255
5
HOH
HOH
552
A
HOH
135
5
HOH
HOH
553
A
HOH
268
5
HOH
HOH
554
A
HOH
175
5
HOH
HOH
555
A
HOH
143
5
HOH
HOH
556
A
HOH
178
5
HOH
HOH
557
A
HOH
257
5
HOH
HOH
558
A
HOH
276
5
HOH
HOH
559
A
HOH
180
5
HOH
HOH
560
A
HOH
58
5
HOH
HOH
561
A
HOH
176
5
HOH
HOH
562
A
HOH
190
5
HOH
HOH
563
A
HOH
195
5
HOH
HOH
564
A
HOH
259
5
HOH
HOH
565
A
HOH
165
5
HOH
HOH
566
A
HOH
82
5
HOH
HOH
567
A
HOH
203
5
HOH
HOH
568
A
HOH
269
5
HOH
HOH
401
B
HOH
140
5
HOH
HOH
402
B
HOH
133
5
HOH
HOH
403
B
HOH
246
5
HOH
HOH
404
B
HOH
32
5
HOH
HOH
405
B
HOH
171
5
HOH
HOH
406
B
HOH
224
5
HOH
HOH
407
B
HOH
102
5
HOH
HOH
408
B
HOH
169
5
HOH
HOH
409
B
HOH
109
5
HOH
HOH
410
B
HOH
214
5
HOH
HOH
411
B
HOH
148
5
HOH
HOH
412
B
HOH
250
5
HOH
HOH
413
B
HOH
66
5
HOH
HOH
414
B
HOH
199
5
HOH
HOH
415
B
HOH
275
5
HOH
HOH
416
B
HOH
39
5
HOH
HOH
417
B
HOH
227
5
HOH
HOH
418
B
HOH
40
5
HOH
HOH
419
B
HOH
245
5
HOH
HOH
420
B
HOH
258
5
HOH
HOH
421
B
HOH
115
5
HOH
HOH
422
B
HOH
34
5
HOH
HOH
423
B
HOH
68
5
HOH
HOH
424
B
HOH
70
5
HOH
HOH
425
B
HOH
3
5
HOH
HOH
426
B
HOH
67
5
HOH
HOH
427
B
HOH
31
5
HOH
HOH
428
B
HOH
204
5
HOH
HOH
429
B
HOH
48
5
HOH
HOH
430
B
HOH
240
5
HOH
HOH
431
B
HOH
95
5
HOH
HOH
432
B
HOH
131
5
HOH
HOH
433
B
HOH
147
5
HOH
HOH
434
B
HOH
114
5
HOH
HOH
435
B
HOH
23
5
HOH
HOH
436
B
HOH
12
5
HOH
HOH
437
B
HOH
130
5
HOH
HOH
438
B
HOH
105
5
HOH
HOH
439
B
HOH
72
5
HOH
HOH
440
B
HOH
266
5
HOH
HOH
441
B
HOH
35
5
HOH
HOH
442
B
HOH
56
5
HOH
HOH
443
B
HOH
125
5
HOH
HOH
444
B
HOH
10
5
HOH
HOH
445
B
HOH
253
5
HOH
HOH
446
B
HOH
43
5
HOH
HOH
447
B
HOH
124
5
HOH
HOH
448
B
HOH
256
5
HOH
HOH
449
B
HOH
36
5
HOH
HOH
450
B
HOH
179
5
HOH
HOH
451
B
HOH
262
5
HOH
HOH
452
B
HOH
261
5
HOH
HOH
453
B
HOH
202
5
HOH
HOH
454
B
HOH
273
5
HOH
HOH
455
B
HOH
57
5
HOH
HOH
456
B
HOH
46
5
HOH
HOH
457
B
HOH
219
5
HOH
HOH
458
B
HOH
106
5
HOH
HOH
459
B
HOH
205
5
HOH
HOH
460
B
HOH
38
5
HOH
HOH
461
B
HOH
53
5
HOH
HOH
462
B
HOH
160
5
HOH
HOH
463
B
HOH
44
5
HOH
HOH
464
B
HOH
156
5
HOH
HOH
465
B
HOH
167
5
HOH
HOH
466
B
HOH
174
5
HOH
HOH
467
B
HOH
191
5
HOH
HOH
468
B
HOH
164
5
HOH
HOH
469
B
HOH
80
5
HOH
HOH
470
B
HOH
62
5
HOH
HOH
471
B
HOH
207
5
HOH
HOH
472
B
HOH
142
5
HOH
HOH
473
B
HOH
116
5
HOH
HOH
474
B
HOH
20
5
HOH
HOH
475
B
HOH
189
5
HOH
HOH
476
B
HOH
146
5
HOH
HOH
477
B
HOH
28
5
HOH
HOH
478
B
HOH
17
5
HOH
HOH
479
B
HOH
236
5
HOH
HOH
480
B
HOH
220
5
HOH
HOH
481
B
HOH
104
5
HOH
HOH
482
B
HOH
111
5
HOH
HOH
483
B
HOH
6
5
HOH
HOH
484
B
HOH
226
5
HOH
HOH
485
B
HOH
181
5
HOH
HOH
486
B
HOH
177
5
HOH
HOH
487
B
HOH
134
5
HOH
HOH
488
B
HOH
149
5
HOH
HOH
489
B
HOH
196
5
HOH
HOH
490
B
HOH
127
5
HOH
HOH
491
B
HOH
183
5
HOH
HOH
492
B
HOH
252
5
HOH
HOH
493
B
HOH
139
5
HOH
HOH
494
B
HOH
118
5
HOH
HOH
495
B
HOH
272
5
HOH
HOH
496
B
HOH
229
5
HOH
HOH
497
B
HOH
238
5
HOH
HOH
498
B
HOH
129
5
HOH
HOH
499
B
HOH
251
5
HOH
HOH
500
B
HOH
249
5
HOH
HOH
501
B
HOH
126
5
HOH
HOH
502
B
HOH
1
5
HOH
HOH
503
B
HOH
244
5
HOH
HOH
504
B
HOH
155
5
HOH
HOH
505
B
HOH
15
5
HOH
HOH
506
B
HOH
103
5
HOH
HOH
507
B
HOH
211
5
HOH
HOH
508
B
HOH
260
5
HOH
HOH
509
B
HOH
265
5
HOH
HOH
510
B
HOH
99
5
HOH
HOH
511
B
n
1
84
A
n
2
85
A
n
3
86
A
MET
87
n
4
MET
87
A
LYS
88
n
5
LYS
88
A
VAL
89
n
6
VAL
89
A
SER
90
n
7
SER
90
A
GLN
91
n
8
GLN
91
A
ALA
92
n
9
ALA
92
A
LEU
93
n
10
LEU
93
A
GLN
94
n
11
GLN
94
A
LEU
95
n
12
LEU
95
A
THR
96
n
13
THR
96
A
SER
97
n
14
SER
97
A
TYR
98
n
15
TYR
98
A
THR
99
n
16
THR
99
A
GLU
100
n
17
GLU
100
A
ASP
101
n
18
ASP
101
A
MET
102
n
19
MET
102
A
ARG
103
n
20
ARG
103
A
ALA
104
n
21
ALA
104
A
GLN
105
n
22
GLN
105
A
GLY
106
n
23
GLY
106
A
LEU
107
n
24
LEU
107
A
GLU
108
n
25
GLU
108
A
PRO
109
n
26
PRO
109
A
THR
110
n
27
THR
110
A
SER
111
n
28
SER
111
A
GLN
112
n
29
GLN
112
A
LEU
113
n
30
LEU
113
A
LEU
114
n
31
LEU
114
A
ASP
115
n
32
ASP
115
A
ILE
116
n
33
ILE
116
A
GLY
117
n
34
GLY
117
A
TYR
118
n
35
TYR
118
A
ILE
119
n
36
ILE
119
A
THR
120
n
37
THR
120
A
ALA
121
n
38
ALA
121
A
ASP
122
n
39
ASP
122
A
ASP
123
n
40
ASP
123
A
ARG
124
n
41
ARG
124
A
LEU
125
n
42
LEU
125
A
ALA
126
n
43
ALA
126
A
GLY
127
n
44
GLY
127
A
LEU
128
n
45
LEU
128
A
LEU
129
n
46
LEU
129
A
ASP
130
n
47
ASP
130
A
ILE
131
n
48
ILE
131
A
THR
132
n
49
THR
132
A
ALA
133
n
50
ALA
133
A
GLY
134
n
51
GLY
134
A
GLY
135
n
52
GLY
135
A
ARG
136
n
53
ARG
136
A
VAL
137
n
54
VAL
137
A
LEU
138
n
55
LEU
138
A
ARG
139
n
56
ARG
139
A
ILE
140
n
57
ILE
140
A
GLU
141
n
58
GLU
141
A
ARG
142
n
59
ARG
142
A
LEU
143
n
60
LEU
143
A
ARG
144
n
61
ARG
144
A
MET
145
n
62
MET
145
A
ALA
146
n
63
ALA
146
A
ASN
147
n
64
ASN
147
A
GLY
148
n
65
GLY
148
A
GLU
149
n
66
GLU
149
A
PRO
150
n
67
PRO
150
A
MET
151
n
68
MET
151
A
ALA
152
n
69
ALA
152
A
ILE
153
n
70
ILE
153
A
GLU
154
n
71
GLU
154
A
THR
155
n
72
THR
155
A
THR
156
n
73
THR
156
A
HIS
157
n
74
HIS
157
A
LEU
158
n
75
LEU
158
A
SER
159
n
76
SER
159
A
ALA
160
n
77
ALA
160
A
LYS
161
n
78
LYS
161
A
ARG
162
n
79
ARG
162
A
PHE
163
n
80
PHE
163
A
PRO
164
n
81
PRO
164
A
ALA
165
n
82
ALA
165
A
LEU
166
n
83
LEU
166
A
ARG
167
n
84
ARG
167
A
ARG
168
n
85
ARG
168
A
SER
169
n
86
SER
169
A
LEU
170
n
87
LEU
170
A
VAL
171
n
88
VAL
171
A
LYS
172
n
89
LYS
172
A
TYR
173
n
90
TYR
173
A
THR
174
n
91
THR
174
A
SER
175
n
92
SER
175
A
LEU
176
n
93
LEU
176
A
TYR
177
n
94
TYR
177
A
THR
178
n
95
THR
178
A
ALA
179
n
96
ALA
179
A
LEU
180
n
97
LEU
180
A
ALA
181
n
98
ALA
181
A
GLU
182
n
99
GLU
182
A
VAL
183
n
100
VAL
183
A
TYR
184
n
101
TYR
184
A
ASP
185
n
102
ASP
185
A
VAL
186
n
103
VAL
186
A
HIS
187
n
104
HIS
187
A
LEU
188
n
105
LEU
188
A
ALA
189
n
106
ALA
189
A
GLU
190
n
107
GLU
190
A
ALA
191
n
108
ALA
191
A
GLU
192
n
109
GLU
192
A
GLU
193
n
110
GLU
193
A
THR
194
n
111
THR
194
A
ILE
195
n
112
ILE
195
A
GLU
196
n
113
GLU
196
A
THR
197
n
114
THR
197
A
SER
198
n
115
SER
198
A
LEU
199
n
116
LEU
199
A
ALA
200
n
117
ALA
200
A
THR
201
n
118
THR
201
A
PRO
202
n
119
PRO
202
A
ARG
203
n
120
ARG
203
A
GLU
204
n
121
GLU
204
A
ALA
205
n
122
ALA
205
A
GLY
206
n
123
GLY
206
A
LEU
207
n
124
LEU
207
A
LEU
208
n
125
LEU
208
A
GLY
209
n
126
GLY
209
A
THR
210
n
127
THR
210
A
ASP
211
n
128
ASP
211
A
VAL
212
n
129
VAL
212
A
GLY
213
n
130
GLY
213
A
LEU
214
n
131
LEU
214
A
PRO
215
n
132
PRO
215
A
MET
216
n
133
MET
216
A
LEU
217
n
134
LEU
217
A
MET
218
n
135
MET
218
A
LEU
219
n
136
LEU
219
A
SER
220
n
137
SER
220
A
ARG
221
n
138
ARG
221
A
HIS
222
n
139
HIS
222
A
SER
223
n
140
SER
223
A
GLN
224
n
141
GLN
224
A
ASP
225
n
142
ASP
225
A
ARG
226
n
143
ARG
226
A
THR
227
n
144
THR
227
A
GLY
228
n
145
GLY
228
A
GLN
229
n
146
GLN
229
A
PRO
230
n
147
PRO
230
A
VAL
231
n
148
VAL
231
A
GLU
232
n
149
GLU
232
A
TRP
233
n
150
TRP
233
A
VAL
234
n
151
VAL
234
A
ARG
235
n
152
ARG
235
A
SER
236
n
153
SER
236
A
VAL
237
n
154
VAL
237
A
TYR
238
n
155
TYR
238
A
ARG
239
n
156
ARG
239
A
GLY
240
n
157
GLY
240
A
ASP
241
n
158
ASP
241
A
ARG
242
n
159
ARG
242
A
TYR
243
n
160
TYR
243
A
LYS
244
n
161
LYS
244
A
PHE
245
n
162
PHE
245
A
VAL
246
n
163
VAL
246
A
ALA
247
n
164
ALA
247
A
ARG
248
n
165
ARG
248
A
LEU
249
n
166
LEU
249
A
LYS
250
n
167
LYS
250
A
ARG
251
n
168
ARG
251
A
PRO
252
n
169
PRO
252
A
n
170
253
A
n
171
254
A
n
1
84
B
n
2
85
B
n
3
86
B
n
4
87
B
LYS
88
n
5
LYS
88
B
VAL
89
n
6
VAL
89
B
SER
90
n
7
SER
90
B
GLN
91
n
8
GLN
91
B
ALA
92
n
9
ALA
92
B
LEU
93
n
10
LEU
93
B
GLN
94
n
11
GLN
94
B
LEU
95
n
12
LEU
95
B
THR
96
n
13
THR
96
B
SER
97
n
14
SER
97
B
TYR
98
n
15
TYR
98
B
THR
99
n
16
THR
99
B
GLU
100
n
17
GLU
100
B
ASP
101
n
18
ASP
101
B
MET
102
n
19
MET
102
B
ARG
103
n
20
ARG
103
B
ALA
104
n
21
ALA
104
B
GLN
105
n
22
GLN
105
B
GLY
106
n
23
GLY
106
B
LEU
107
n
24
LEU
107
B
GLU
108
n
25
GLU
108
B
PRO
109
n
26
PRO
109
B
THR
110
n
27
THR
110
B
SER
111
n
28
SER
111
B
GLN
112
n
29
GLN
112
B
LEU
113
n
30
LEU
113
B
LEU
114
n
31
LEU
114
B
ASP
115
n
32
ASP
115
B
ILE
116
n
33
ILE
116
B
GLY
117
n
34
GLY
117
B
TYR
118
n
35
TYR
118
B
ILE
119
n
36
ILE
119
B
THR
120
n
37
THR
120
B
ALA
121
n
38
ALA
121
B
ASP
122
n
39
ASP
122
B
ASP
123
n
40
ASP
123
B
ARG
124
n
41
ARG
124
B
LEU
125
n
42
LEU
125
B
ALA
126
n
43
ALA
126
B
GLY
127
n
44
GLY
127
B
LEU
128
n
45
LEU
128
B
LEU
129
n
46
LEU
129
B
ASP
130
n
47
ASP
130
B
ILE
131
n
48
ILE
131
B
THR
132
n
49
THR
132
B
ALA
133
n
50
ALA
133
B
GLY
134
n
51
GLY
134
B
GLY
135
n
52
GLY
135
B
ARG
136
n
53
ARG
136
B
VAL
137
n
54
VAL
137
B
LEU
138
n
55
LEU
138
B
ARG
139
n
56
ARG
139
B
ILE
140
n
57
ILE
140
B
GLU
141
n
58
GLU
141
B
ARG
142
n
59
ARG
142
B
LEU
143
n
60
LEU
143
B
ARG
144
n
61
ARG
144
B
MET
145
n
62
MET
145
B
ALA
146
n
63
ALA
146
B
ASN
147
n
64
ASN
147
B
GLY
148
n
65
GLY
148
B
GLU
149
n
66
GLU
149
B
PRO
150
n
67
PRO
150
B
MET
151
n
68
MET
151
B
ALA
152
n
69
ALA
152
B
ILE
153
n
70
ILE
153
B
GLU
154
n
71
GLU
154
B
THR
155
n
72
THR
155
B
THR
156
n
73
THR
156
B
HIS
157
n
74
HIS
157
B
LEU
158
n
75
LEU
158
B
SER
159
n
76
SER
159
B
ALA
160
n
77
ALA
160
B
LYS
161
n
78
LYS
161
B
ARG
162
n
79
ARG
162
B
PHE
163
n
80
PHE
163
B
PRO
164
n
81
PRO
164
B
ALA
165
n
82
ALA
165
B
LEU
166
n
83
LEU
166
B
ARG
167
n
84
ARG
167
B
ARG
168
n
85
ARG
168
B
SER
169
n
86
SER
169
B
LEU
170
n
87
LEU
170
B
VAL
171
n
88
VAL
171
B
LYS
172
n
89
LYS
172
B
TYR
173
n
90
TYR
173
B
THR
174
n
91
THR
174
B
SER
175
n
92
SER
175
B
LEU
176
n
93
LEU
176
B
TYR
177
n
94
TYR
177
B
THR
178
n
95
THR
178
B
ALA
179
n
96
ALA
179
B
LEU
180
n
97
LEU
180
B
ALA
181
n
98
ALA
181
B
GLU
182
n
99
GLU
182
B
VAL
183
n
100
VAL
183
B
TYR
184
n
101
TYR
184
B
ASP
185
n
102
ASP
185
B
VAL
186
n
103
VAL
186
B
HIS
187
n
104
HIS
187
B
LEU
188
n
105
LEU
188
B
ALA
189
n
106
ALA
189
B
GLU
190
n
107
GLU
190
B
ALA
191
n
108
ALA
191
B
GLU
192
n
109
GLU
192
B
GLU
193
n
110
GLU
193
B
THR
194
n
111
THR
194
B
ILE
195
n
112
ILE
195
B
GLU
196
n
113
GLU
196
B
THR
197
n
114
THR
197
B
SER
198
n
115
SER
198
B
LEU
199
n
116
LEU
199
B
ALA
200
n
117
ALA
200
B
THR
201
n
118
THR
201
B
PRO
202
n
119
PRO
202
B
ARG
203
n
120
ARG
203
B
GLU
204
n
121
GLU
204
B
ALA
205
n
122
ALA
205
B
GLY
206
n
123
GLY
206
B
LEU
207
n
124
LEU
207
B
LEU
208
n
125
LEU
208
B
GLY
209
n
126
GLY
209
B
THR
210
n
127
THR
210
B
ASP
211
n
128
ASP
211
B
VAL
212
n
129
VAL
212
B
GLY
213
n
130
GLY
213
B
LEU
214
n
131
LEU
214
B
PRO
215
n
132
PRO
215
B
MET
216
n
133
MET
216
B
LEU
217
n
134
LEU
217
B
MET
218
n
135
MET
218
B
LEU
219
n
136
LEU
219
B
SER
220
n
137
SER
220
B
ARG
221
n
138
ARG
221
B
HIS
222
n
139
HIS
222
B
SER
223
n
140
SER
223
B
GLN
224
n
141
GLN
224
B
ASP
225
n
142
ASP
225
B
ARG
226
n
143
ARG
226
B
THR
227
n
144
THR
227
B
GLY
228
n
145
GLY
228
B
GLN
229
n
146
GLN
229
B
PRO
230
n
147
PRO
230
B
VAL
231
n
148
VAL
231
B
GLU
232
n
149
GLU
232
B
TRP
233
n
150
TRP
233
B
VAL
234
n
151
VAL
234
B
ARG
235
n
152
ARG
235
B
SER
236
n
153
SER
236
B
VAL
237
n
154
VAL
237
B
TYR
238
n
155
TYR
238
B
ARG
239
n
156
ARG
239
B
GLY
240
n
157
GLY
240
B
ASP
241
n
158
ASP
241
B
ARG
242
n
159
ARG
242
B
TYR
243
n
160
TYR
243
B
LYS
244
n
161
LYS
244
B
PHE
245
n
162
PHE
245
B
VAL
246
n
163
VAL
246
B
ALA
247
n
164
ALA
247
B
ARG
248
n
165
ARG
248
B
LEU
249
n
166
LEU
249
B
LYS
250
n
167
LYS
250
B
ARG
251
n
168
ARG
251
B
n
169
252
B
n
170
253
B
n
171
254
B
author_and_software_defined_assembly
PISA
2
dimeric
3940
-5
14880
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
91
A
N
GLN
8
A
O
LYS
244
A
O
LYS
161
A
N
PHE
245
A
N
PHE
162
B
O
ILE
195
B
O
ILE
112
B
N
GLU
196
B
N
GLU
113
B
O
MET
218
B
O
MET
135
B
N
LEU
217
B
N
LEU
134
B
O
TYR
238
B
O
TYR
155
B
O
ARG
235
B
O
ARG
152
B
N
THR
155
B
N
THR
72
B
O
MET
151
B
O
MET
68
B
N
ARG
144
B
N
ARG
61
B
O
ARG
139
B
O
ARG
56
B
N
GLY
117
B
N
GLY
34
A
N
ASP
115
A
N
ASP
32
A
O
GLU
141
A
O
GLU
58
A
N
ARG
144
A
N
ARG
61
A
O
ALA
152
A
O
ALA
69
A
N
ILE
153
A
N
ILE
70
A
O
VAL
237
A
O
VAL
154
A
O
VAL
231
A
O
VAL
148
A
N
SER
223
A
N
SER
140
A
O
GLN
224
A
O
GLN
141
A
N
GLU
190
A
N
GLU
107
A
N
ALA
191
A
N
ALA
108
B
O
LEU
249
B
O
LEU
166
B
O
VAL
246
B
O
VAL
163
B
N
GLN
91
B
N
GLN
8
1
A
HOH
479
G
HOH
1
B
CG
LEU
93
B
CG
LEU
10
1
Y
1
B
CD1
LEU
93
B
CD1
LEU
10
1
Y
1
B
CD2
LEU
93
B
CD2
LEU
10
1
Y
1
A
GLY
84
A
GLY
1
1
Y
1
A
SER
85
A
SER
2
1
Y
1
A
HIS
86
A
HIS
3
1
Y
1
A
GLN
253
A
GLN
170
1
Y
1
A
ASP
254
A
ASP
171
1
Y
1
B
GLY
84
B
GLY
1
1
Y
1
B
SER
85
B
SER
2
1
Y
1
B
HIS
86
B
HIS
3
1
Y
1
B
MET
87
B
MET
4
1
Y
1
B
PRO
252
B
PRO
169
1
Y
1
B
GLN
253
B
GLN
170
1
Y
1
B
ASP
254
B
ASP
171
1
Y
1
A
B
O
O
HOH
HOH
495
496
2.14
1
B
B
O
O
MET
HOH
145
401
2.14
1
B
B
O
O
HOH
HOH
503
506
2.16
1
B
B
O
O
HOH
HOH
485
495
2.18
1
A
A
OD1
O
ASP
HOH
130
401
2.19
B
1
A
A
O
O
HOH
HOH
429
539
2.19
1
A
A
O
O
HOH
HOH
508
517
2.14
1_555
4_455
1
A
A
O
O
HOH
HOH
484
547
2.18
1_555
4_455
1
A
SER
198
-163.08
-165.97
1
B
ALA
133
-55.13
-8.82
1
B
ASN
147
61.97
-100.45
1
B
THR
174
69.00
-49.08
0.2319
0.1896
0.1917
1.652
27.133
2310
46436
4.97
99.81
0.21
Random selection
1
FREE R-VALUE
1.36
MOLECULAR REPLACEMENT
21.16
0.90
1.11
Effector-binding domain of entry 2wv0
ML
FLAT BULK SOLVENT MODEL
1.652
27.133
279
2911
40
0
2592
0.007
2691
1.096
3645
13.793
1033
0.040
428
0.004
462
0.3157
0.2837
1.6861
135
2549
100.00
0.3006
0.2555
1.7227
132
2509
100.00
0.2753
0.2474
1.7628
135
2564
100.00
0.2905
0.2312
1.8069
136
2590
100.00
0.2749
0.2186
1.8557
132
2520
100.00
0.2410
0.2012
1.9103
135
2568
100.00
0.2410
0.1980
1.9720
131
2545
100.00
0.2149
0.1944
2.0424
136
2580
100.00
0.2441
0.1936
2.1242
133
2571
100.00
0.2004
0.1933
2.2208
135
2569
100.00
0.2480
0.1880
2.3378
137
2614
100.00
0.2478
0.1913
2.4842
137
2603
100.00
0.2577
0.2070
2.6758
136
2596
100.00
0.2153
0.2088
2.9448
137
2609
100.00
0.2573
0.1870
3.3703
139
2657
100.00
0.2044
0.1676
4.2436
138
2649
99.00
0.2087
0.1665
27.1371
146
2833
99.00
1.65
35.0
4ZSI
46439
0.046
1
21.0
5.7
99.8
0.812
1.65
1.71
2.1
1
5.7
99.7
refinement
PHENIX
1.8.4_1496
phasing
PHASER
data reduction
XDS
data scaling
XSCALE
Crystal structure of the effector-binding domain of DasR (DasR-EBD) in complex with glucosamine-6-phosphate
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
5
N
N
A
SER
97
A
SER
14
HELX_P
A
GLN
105
A
GLN
22
1
AA1
9
A
ASP
122
A
ASP
39
HELX_P
A
ASP
130
A
ASP
47
1
AA2
9
A
ALA
165
A
ALA
82
HELX_P
A
LEU
170
A
LEU
87
1
AA3
6
A
SER
175
A
SER
92
HELX_P
A
ASP
185
A
ASP
102
1
AA4
11
A
THR
201
A
THR
118
HELX_P
A
GLY
209
A
GLY
126
1
AA5
9
B
SER
97
B
SER
14
HELX_P
B
ALA
104
B
ALA
21
1
AA6
8
B
ASP
122
B
ASP
39
HELX_P
B
ASP
130
B
ASP
47
1
AA7
9
B
ALA
165
B
ALA
82
HELX_P
B
THR
174
B
THR
91
1
AA8
10
B
SER
175
B
SER
92
HELX_P
B
ASP
185
B
ASP
102
1
AA9
11
B
THR
201
B
THR
118
HELX_P
B
GLY
209
B
GLY
126
1
AB1
9
TRANSCRIPTION
Transcription, Repressor, Bacterial transcription regulation, Transcription factor, GntR/HutC family, Effector-binding domain, N-acetylglucosamine utilization, Master regulator, Glucosamine-6-phosphate
DASR_STRCO
UNP
1
88
Q9K492
KVSQALQLTSYTEDMRAQGLEPTSQLLDIGYITADDRLAGLLDITAGGRVLRIERLRMANGEPMAIETTHLSAKRFPALR
RSLVKYTSLYTALAEVYDVHLAEAEETIETSLATPREAGLLGTDVGLPMLMLSRHSQDRTGQPVEWVRSVYRGDRYKFVA
RLKRPQD
88
254
4ZSI
88
254
Q9K492
A
1
5
171
88
254
4ZSI
88
254
Q9K492
B
1
5
171
1
expression tag
GLY
84
4ZSI
A
Q9K492
UNP
1
1
expression tag
SER
85
4ZSI
A
Q9K492
UNP
2
1
expression tag
HIS
86
4ZSI
A
Q9K492
UNP
3
1
expression tag
MET
87
4ZSI
A
Q9K492
UNP
4
2
expression tag
GLY
84
4ZSI
B
Q9K492
UNP
1
2
expression tag
SER
85
4ZSI
B
Q9K492
UNP
2
2
expression tag
HIS
86
4ZSI
B
Q9K492
UNP
3
2
expression tag
MET
87
4ZSI
B
Q9K492
UNP
4
8
8
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
VAL
89
A
VAL
6
A
ALA
92
A
ALA
9
A
TYR
243
A
TYR
160
A
LYS
250
A
LYS
167
B
LEU
188
B
LEU
105
B
LEU
199
B
LEU
116
B
PRO
215
B
PRO
132
B
ASP
225
B
ASP
142
B
PRO
230
B
PRO
147
B
ARG
239
B
ARG
156
B
GLU
149
B
GLU
66
B
SER
159
B
SER
76
B
ARG
136
B
ARG
53
B
ALA
146
B
ALA
63
B
PRO
109
B
PRO
26
B
THR
120
B
THR
37
A
PRO
109
A
PRO
26
A
THR
120
A
THR
37
A
ARG
136
A
ARG
53
A
ALA
146
A
ALA
63
A
GLU
149
A
GLU
66
A
SER
159
A
SER
76
A
PRO
230
A
PRO
147
A
TYR
238
A
TYR
155
A
PRO
215
A
PRO
132
A
ASP
225
A
ASP
142
A
LEU
188
A
LEU
105
A
LEU
199
A
LEU
116
B
TYR
243
B
TYR
160
B
LYS
250
B
LYS
167
B
VAL
89
B
VAL
6
B
ALA
92
B
ALA
9
154
P 32 2 1