0.017938
0.010356
0.000000
0.000000
0.020713
0.000000
0.000000
0.000000
0.009318
0.000000
0.000000
0.000000
Kallen, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
55.748
55.748
107.324
C33 H34 Cl N3 O3
556.094
(S)-7-((R)-sec-butoxy)-1-(4-chlorophenyl)-6-methoxy-2-(4-(methyl(pyridin-4-ylmethyl)amino)phenyl)-1,2-dihydroisoquinolin-3(4H)-one
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
N
3
N
C
N
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
N
11
N
C
N
12
R
C
N
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
N
20
N
CL
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
N
25
S
C
N
26
N
N
N
27
N
C
N
28
N
O
N
29
N
O
N
30
N
O
N
31
N
C
N
32
N
N
N
33
N
C
N
34
N
C
Y
35
N
N
Y
36
N
C
Y
37
N
C
Y
38
N
C
Y
39
N
C
Y
40
N
C
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
N
N
96
N
C
N
97
N
N
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
CL
N
149
N
N
N
150
R
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
S
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
S
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
N
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
S
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
R
C
N
384
N
O
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
doub
Y
8
N
sing
Y
9
N
sing
Y
10
N
sing
N
11
N
sing
Y
12
N
doub
Y
13
N
doub
Y
14
N
sing
N
15
N
sing
N
16
N
sing
Y
17
N
sing
Y
18
N
doub
Y
19
N
sing
Y
20
N
doub
Y
21
N
sing
N
22
N
sing
Y
23
N
doub
N
24
N
sing
N
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
doub
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
sing
N
33
N
sing
Y
34
N
doub
N
35
N
sing
N
36
N
sing
Y
37
N
doub
Y
38
N
sing
N
39
N
sing
Y
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
Y
218
N
sing
Y
219
N
doub
Y
220
N
doub
N
221
N
sing
Y
222
N
sing
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
58
6348
6358
10.1021/acs.jmedchem.5b00810
26181851
Discovery of a Dihydroisoquinolinone Derivative (NVP-CGM097): A Highly Potent and Selective MDM2 Inhibitor Undergoing Phase 1 Clinical Trials in p53wt Tumors.
2015
10.2210/pdb4zyi/pdb
pdb_00004zyi
100.0
1
CCD
2009-02-13
MARRESEARCH
SI 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.00001
1.0
X10SA
SLS
1.00001
SYNCHROTRON
SLS BEAMLINE X10SA
11156.052
E3 ubiquitin-protein ligase Mdm2
6.3.2.-
N-TERMINAL DOMAIN, P53-BINDING DOMAIN, UNP residues 17-111
1
man
polymer
556.094
(S)-7-((R)-sec-butoxy)-1-(4-chlorophenyl)-6-methoxy-2-(4-(methyl(pyridin-4-ylmethyl)amino)phenyl)-1,2-dihydroisoquinolin-3(4H)-one
1
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
62
nat
water
Double minute 2 protein,Hdm2,Oncoprotein Mdm2,p53-binding protein Mdm2
no
no
GSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE
HRKIYTMIYRNLVVVN
GSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE
HRKIYTMIYRNLVVVN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
96
MDM2
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.16
43.00
VAPOR DIFFUSION, HANGING DROP
4.7
reservoir: 2.2M AmmoniumSulfate, 0.1M cictric acid, pH4.7. protein: 7mg/ml Hdm2 in 50mM TRIS pH8.0, 200mM NaCl, 1mM TCEP, 10% glycerol. drop: 1ul reservoir + 1ul protein
4.7
298
chem_comp_atom
chem_comp_bond
database_2
diffrn_radiation_wavelength
pdbx_initial_refinement_model
pdbx_struct_special_symmetry
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2015-07-29
1
1
2015-09-09
1
2
2024-01-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
RCSB
Y
PDBE
2015-05-21
REL
REL
4TH
(S)-7-((R)-sec-butoxy)-1-(4-chlorophenyl)-6-methoxy-2-(4-(methyl(pyridin-4-ylmethyl)amino)phenyl)-1,2-dihydroisoquinolin-3(4H)-one
CL
CHLORIDE ION
HOH
water
4ZYC
PDB
experimental model
LI1
1
2
4TH
4TH
201
A
CL
1
3
CL
CL
202
A
HOH
48
4
HOH
HOH
301
A
HOH
18
4
HOH
HOH
302
A
HOH
27
4
HOH
HOH
303
A
HOH
45
4
HOH
HOH
304
A
HOH
19
4
HOH
HOH
305
A
HOH
5
4
HOH
HOH
306
A
HOH
31
4
HOH
HOH
307
A
HOH
8
4
HOH
HOH
308
A
HOH
24
4
HOH
HOH
309
A
HOH
2
4
HOH
HOH
310
A
HOH
51
4
HOH
HOH
311
A
HOH
21
4
HOH
HOH
312
A
HOH
43
4
HOH
HOH
313
A
HOH
36
4
HOH
HOH
314
A
HOH
12
4
HOH
HOH
315
A
HOH
7
4
HOH
HOH
316
A
HOH
22
4
HOH
HOH
317
A
HOH
30
4
HOH
HOH
318
A
HOH
3
4
HOH
HOH
319
A
HOH
6
4
HOH
HOH
320
A
HOH
59
4
HOH
HOH
321
A
HOH
13
4
HOH
HOH
322
A
HOH
60
4
HOH
HOH
323
A
HOH
54
4
HOH
HOH
324
A
HOH
1
4
HOH
HOH
325
A
HOH
17
4
HOH
HOH
326
A
HOH
33
4
HOH
HOH
327
A
HOH
10
4
HOH
HOH
328
A
HOH
23
4
HOH
HOH
329
A
HOH
20
4
HOH
HOH
330
A
HOH
38
4
HOH
HOH
331
A
HOH
28
4
HOH
HOH
332
A
HOH
29
4
HOH
HOH
333
A
HOH
42
4
HOH
HOH
334
A
HOH
15
4
HOH
HOH
335
A
HOH
25
4
HOH
HOH
336
A
HOH
16
4
HOH
HOH
337
A
HOH
14
4
HOH
HOH
338
A
HOH
50
4
HOH
HOH
339
A
HOH
4
4
HOH
HOH
340
A
HOH
53
4
HOH
HOH
341
A
HOH
61
4
HOH
HOH
342
A
HOH
41
4
HOH
HOH
343
A
HOH
55
4
HOH
HOH
344
A
HOH
37
4
HOH
HOH
345
A
HOH
39
4
HOH
HOH
346
A
HOH
11
4
HOH
HOH
347
A
HOH
46
4
HOH
HOH
348
A
HOH
44
4
HOH
HOH
349
A
HOH
34
4
HOH
HOH
350
A
HOH
9
4
HOH
HOH
351
A
HOH
49
4
HOH
HOH
352
A
HOH
57
4
HOH
HOH
353
A
HOH
58
4
HOH
HOH
354
A
HOH
56
4
HOH
HOH
355
A
HOH
26
4
HOH
HOH
356
A
HOH
32
4
HOH
HOH
357
A
HOH
40
4
HOH
HOH
358
A
HOH
62
4
HOH
HOH
359
A
HOH
35
4
HOH
HOH
360
A
HOH
52
4
HOH
HOH
361
A
HOH
47
4
HOH
HOH
362
A
n
1
16
A
n
2
17
A
n
3
18
A
n
4
19
A
PRO
20
n
5
PRO
20
A
ALA
21
n
6
ALA
21
A
SER
22
n
7
SER
22
A
GLU
23
n
8
GLU
23
A
GLN
24
n
9
GLN
24
A
GLU
25
n
10
GLU
25
A
THR
26
n
11
THR
26
A
LEU
27
n
12
LEU
27
A
VAL
28
n
13
VAL
28
A
ARG
29
n
14
ARG
29
A
PRO
30
n
15
PRO
30
A
LYS
31
n
16
LYS
31
A
PRO
32
n
17
PRO
32
A
LEU
33
n
18
LEU
33
A
LEU
34
n
19
LEU
34
A
LEU
35
n
20
LEU
35
A
LYS
36
n
21
LYS
36
A
LEU
37
n
22
LEU
37
A
LEU
38
n
23
LEU
38
A
LYS
39
n
24
LYS
39
A
SER
40
n
25
SER
40
A
VAL
41
n
26
VAL
41
A
GLY
42
n
27
GLY
42
A
n
28
43
A
GLN
44
n
29
GLN
44
A
LYS
45
n
30
LYS
45
A
ASP
46
n
31
ASP
46
A
THR
47
n
32
THR
47
A
TYR
48
n
33
TYR
48
A
THR
49
n
34
THR
49
A
MET
50
n
35
MET
50
A
LYS
51
n
36
LYS
51
A
GLU
52
n
37
GLU
52
A
VAL
53
n
38
VAL
53
A
LEU
54
n
39
LEU
54
A
PHE
55
n
40
PHE
55
A
TYR
56
n
41
TYR
56
A
LEU
57
n
42
LEU
57
A
GLY
58
n
43
GLY
58
A
GLN
59
n
44
GLN
59
A
TYR
60
n
45
TYR
60
A
ILE
61
n
46
ILE
61
A
MET
62
n
47
MET
62
A
THR
63
n
48
THR
63
A
LYS
64
n
49
LYS
64
A
ARG
65
n
50
ARG
65
A
LEU
66
n
51
LEU
66
A
TYR
67
n
52
TYR
67
A
ASP
68
n
53
ASP
68
A
GLU
69
n
54
GLU
69
A
LYS
70
n
55
LYS
70
A
GLN
71
n
56
GLN
71
A
GLN
72
n
57
GLN
72
A
HIS
73
n
58
HIS
73
A
ILE
74
n
59
ILE
74
A
VAL
75
n
60
VAL
75
A
TYR
76
n
61
TYR
76
A
CYS
77
n
62
CYS
77
A
SER
78
n
63
SER
78
A
ASN
79
n
64
ASN
79
A
ASP
80
n
65
ASP
80
A
LEU
81
n
66
LEU
81
A
LEU
82
n
67
LEU
82
A
GLY
83
n
68
GLY
83
A
ASP
84
n
69
ASP
84
A
LEU
85
n
70
LEU
85
A
PHE
86
n
71
PHE
86
A
GLY
87
n
72
GLY
87
A
VAL
88
n
73
VAL
88
A
PRO
89
n
74
PRO
89
A
SER
90
n
75
SER
90
A
PHE
91
n
76
PHE
91
A
SER
92
n
77
SER
92
A
VAL
93
n
78
VAL
93
A
LYS
94
n
79
LYS
94
A
GLU
95
n
80
GLU
95
A
HIS
96
n
81
HIS
96
A
ARG
97
n
82
ARG
97
A
LYS
98
n
83
LYS
98
A
ILE
99
n
84
ILE
99
A
TYR
100
n
85
TYR
100
A
THR
101
n
86
THR
101
A
MET
102
n
87
MET
102
A
ILE
103
n
88
ILE
103
A
TYR
104
n
89
TYR
104
A
ARG
105
n
90
ARG
105
A
ASN
106
n
91
ASN
106
A
LEU
107
n
92
LEU
107
A
VAL
108
n
93
VAL
108
A
VAL
109
n
94
VAL
109
A
VAL
110
n
95
VAL
110
A
n
96
111
A
author_and_software_defined_assembly
PISA
1
monomeric
110
-7
5810
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
48
A
O
TYR
33
A
N
VAL
28
A
N
VAL
13
A
N
ARG
29
A
N
ARG
14
A
O
VAL
108
A
O
VAL
93
A
N
VAL
75
A
N
VAL
60
A
O
PHE
91
A
O
PHE
76
1
A
CL
202
C
CL
1
A
GLY
16
A
GLY
1
1
Y
1
A
SER
17
A
SER
2
1
Y
1
A
GLN
18
A
GLN
3
1
Y
1
A
ILE
19
A
ILE
4
1
Y
1
A
ALA
43
A
ALA
28
1
Y
1
A
ASN
111
A
ASN
96
1
Y
1
-10.05
1.60
100.20
90.15
A
A
A
CG
SD
CE
MET
MET
MET
62
62
62
N
60.860
27.2860
13.600
0.0500
0.0200
0.0000
0.0500
0.0000
-0.0700
0.9400
0.9400
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.2467
0.2390
0.2394
1.6700
20.0000
576
11475
4.8000
99.8400
2.3340
0.0790
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1310
0.1140
0.8000
0.8000
1.2000
4ZYC
MAXIMUM LIKELIHOOD
MASK
1.6700
20.0000
62
846
25.13
41.83
41
0
743
90
0.009
0.022
801
1.155
2.052
1080
4.825
5.000
88
40.449
23.750
32
15.118
15.000
149
9.644
15.000
4
0.081
0.200
119
0.007
0.021
580
0.3390
0.2710
1.7130
29
818
847
20
100.0000
1.670
20.000
4ZYI
12116
0.047
0.967
1
94.144
94.140
410905
33.900
99.900
0.340
1.670
1.730
7.490
1346
1.685
1
23.400
0
100.000
data reduction
DENZO
data scaling
SCALEPACK
refinement
REFMAC
5.5.0063
phasing
MOLREP
9.4.09
Discovery of NVP-CGM097 - a highly potent and selective MDM2 inhibitor undergoing phase 1 clinical trials in p53wt tumors: Hdm2 (MDM2) complexed with cpd2
1
N
N
2
N
N
3
N
N
4
N
N
A
PRO
20
A
PRO
5
HELX_P
A
GLU
25
A
GLU
10
5
AA1
6
A
LYS
31
A
LYS
16
HELX_P
A
SER
40
A
SER
25
1
AA2
10
A
MET
50
A
MET
35
HELX_P
A
LYS
64
A
LYS
49
1
AA3
15
A
ASP
80
A
ASP
65
HELX_P
A
GLY
87
A
GLY
72
1
AA4
8
A
GLU
95
A
GLU
80
HELX_P
A
ARG
105
A
ARG
90
1
AA5
11
CELL CYCLE
PPI WITH P53, INHIBITOR COMPLEX, cell cycle
MDM2_HUMAN
UNP
1
17
Q00987
SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVN
17
111
4ZYI
17
111
Q00987
A
1
2
96
1
expression tag
GLY
16
4ZYI
A
Q00987
UNP
1
3
2
anti-parallel
anti-parallel
anti-parallel
A
TYR
48
A
TYR
33
A
THR
49
A
THR
34
A
LEU
27
A
LEU
12
A
PRO
30
A
PRO
15
A
LEU
107
A
LEU
92
A
VAL
109
A
VAL
94
A
ILE
74
A
ILE
59
A
TYR
76
A
TYR
61
A
SER
90
A
SER
75
A
SER
92
A
SER
77
binding site for residue 4TH A 201
A
4TH
201
Software
11
binding site for residue CL A 202
A
CL
202
Software
7
A
GLN
24
A
GLN
9
11
1_555
A
LEU
54
A
LEU
39
11
1_555
A
PHE
55
A
PHE
40
11
1_555
A
MET
62
A
MET
47
11
1_555
A
TYR
67
A
TYR
52
11
1_555
A
GLN
72
A
GLN
57
11
1_555
A
PHE
86
A
PHE
71
11
1_555
A
HIS
96
A
HIS
81
11
1_555
A
ARG
97
A
ARG
82
11
5_554
A
TYR
100
A
TYR
85
11
1_555
A
HOH
319
D
HOH
11
1_555
A
LYS
64
A
LYS
49
7
1_555
A
LYS
64
A
LYS
49
7
10_664
A
ASP
80
A
ASP
65
7
1_555
A
ASP
80
A
ASP
65
7
10_664
A
LEU
81
A
LEU
66
7
1_555
A
LEU
81
A
LEU
66
7
10_664
A
HOH
325
D
HOH
7
1_555
178
P 61 2 2