data_4R0U # _entry.id 4R0U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4R0U pdb_00004r0u 10.2210/pdb4r0u/pdb RCSB RCSB086757 ? ? WWPDB D_1000086757 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-17 2 'Structure model' 1 1 2015-01-14 3 'Structure model' 1 2 2024-02-28 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 4R0U _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-08-01 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ivanova, M.I.' 1 'Eisenberg, D.S.' 2 'Sawaya, M.R.' 3 # _citation.id primary _citation.title 'Structure-based design of functional amyloid materials.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 136 _citation.page_first 18044 _citation.page_last 18051 _citation.year 2014 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25474758 _citation.pdbx_database_id_DOI 10.1021/ja509648u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, D.' 1 ? primary 'Jones, E.M.' 2 ? primary 'Sawaya, M.R.' 3 ? primary 'Furukawa, H.' 4 ? primary 'Luo, F.' 5 ? primary 'Ivanova, M.' 6 ? primary 'Sievers, S.A.' 7 ? primary 'Wang, W.' 8 ? primary 'Yaghi, O.M.' 9 ? primary 'Liu, C.' 10 ? primary 'Eisenberg, D.S.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Alpha-synuclein 617.692 1 ? ? 'UNP RESIDUES 72-78' ? 2 water nat water 18.015 7 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Non-A beta component of AD amyloid, Non-A4 component of amyloid precursor, NACP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TGVTAVA _entity_poly.pdbx_seq_one_letter_code_can TGVTAVA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 GLY n 1 3 VAL n 1 4 THR n 1 5 ALA n 1 6 VAL n 1 7 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'TGVTAVA (residues 72-78) from Human alpha-synuclein, synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ALA 7 7 7 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 1 HOH HOH A . B 2 HOH 2 102 2 HOH HOH A . B 2 HOH 3 103 3 HOH HOH A . B 2 HOH 4 104 4 HOH HOH A . B 2 HOH 5 105 5 HOH HOH A . B 2 HOH 6 106 6 HOH HOH A . B 2 HOH 7 107 7 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 1.3.2 'Wed Feb 15 11:59:26 2006' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.8.0073 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 15.584 _cell.length_b 4.742 _cell.length_c 25.806 _cell.angle_alpha 90.000 _cell.angle_beta 98.960 _cell.angle_gamma 90.000 _cell.entry_id 4R0U _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4R0U _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4R0U _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.600 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.52 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 19.34 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.2M magnesium formate, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-07-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.895432 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID13' _diffrn_source.pdbx_wavelength_list 0.895432 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID13 # _reflns.entry_id 4R0U _reflns.d_resolution_high 1.38 _reflns.d_resolution_low 90.000 _reflns.number_obs 798 _reflns.pdbx_Rmerge_I_obs 0.151 _reflns.pdbx_netI_over_sigmaI 8.400 _reflns.pdbx_chi_squared 1.125 _reflns.pdbx_redundancy 3.400 _reflns.percent_possible_obs 83.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.number_all 798 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 18.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.400 1.510 ? ? ? 0 0.229 ? ? 1.017 1.800 ? ? ? 115 ? ? ? ? 61.200 ? ? 1 1 1.510 1.660 ? ? ? 0 0.329 ? ? 1.107 2.400 ? ? ? 136 ? ? ? ? 71.200 ? ? 2 1 1.660 1.900 ? ? ? 0 0.262 ? ? 1.123 3.600 ? ? ? 155 ? ? ? ? 94.500 ? ? 3 1 1.900 2.390 ? ? ? 0 0.205 ? ? 1.091 4.300 ? ? ? 197 ? ? ? ? 96.600 ? ? 4 1 2.390 90.000 ? ? ? 0 0.130 ? ? 1.185 4.100 ? ? ? 195 ? ? ? ? 95.100 ? ? 5 1 # _refine.entry_id 4R0U _refine.ls_d_res_high 1.3800 _refine.ls_d_res_low 25.4900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 86.1800 _refine.ls_number_reflns_obs 798 _refine.ls_number_reflns_all 798 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all 0.2045 _refine.ls_R_factor_obs 0.2045 _refine.ls_R_factor_R_work 0.2027 _refine.ls_wR_factor_R_work 0.2378 _refine.ls_R_factor_R_free 0.2175 _refine.ls_wR_factor_R_free 0.2528 _refine.ls_percent_reflns_R_free 11.3000 _refine.ls_number_reflns_R_free 90 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.6240 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.3400 _refine.aniso_B[2][2] -0.2100 _refine.aniso_B[3][3] -0.1900 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.2200 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9650 _refine.correlation_coeff_Fo_to_Fc_free 0.9670 _refine.overall_SU_R_Cruickshank_DPI 0.0960 _refine.overall_SU_R_free 0.0873 _refine.pdbx_overall_ESU_R 0.0960 _refine.pdbx_overall_ESU_R_Free 0.0870 _refine.overall_SU_ML 0.0770 _refine.overall_SU_B 2.3360 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'ideal beta strand' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7067 _refine.B_iso_max 41.770 _refine.B_iso_min 8.240 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 43 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 50 _refine_hist.d_res_high 1.3800 _refine_hist.d_res_low 25.4900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 42 0.010 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 45 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 58 1.312 1.974 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 101 0.544 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6 4.887 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 4 3.831 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 10 0.060 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 46 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 6 0.000 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 27 3.692 2.027 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 26 2.327 1.911 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 31 5.827 3.254 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.3800 _refine_ls_shell.d_res_low 1.5420 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 68.9400 _refine_ls_shell.number_reflns_R_work 163 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3230 _refine_ls_shell.R_factor_R_free 0.3460 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 19 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 182 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4R0U _struct.title 'Tgvtava, an amyloid forming segment from alpha synuclein, residues 72-78' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R0U _struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYUA_HUMAN _struct_ref.pdbx_db_accession P37840 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TGVTAVA _struct_ref.pdbx_align_begin 72 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4R0U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 7 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P37840 _struct_ref_seq.db_align_beg 72 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 78 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.4840000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.7420000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.7420000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.4840000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000 1.0000000000 0.0000000000 2.3710000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271 7 'crystal symmetry operation' 2_636 -x+1,y-3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000 1.0000000000 0.0000000000 -7.1130000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271 8 'crystal symmetry operation' 2_646 -x+1,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000 1.0000000000 0.0000000000 -2.3710000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271 9 'crystal symmetry operation' 2_666 -x+1,y+3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000 1.0000000000 0.0000000000 7.1130000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271 10 'crystal symmetry operation' 2_676 -x+1,y+5/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000 1.0000000000 0.0000000000 11.8550000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271 # _struct_biol.id 1 _struct_biol.details ;There are two choices of the biological unit. The first choice is a pair of indefinitely long beta sheets constructed from chain A and unit cell translations along the b direction (that is, the b direction corresponds to the fiber axis) (i.e. X,Y,Z; X,Y+1,Z; X,Y+2,Z; etc.) together with a symmetry related sheet formed from 1-X,Y+1/2,1-Z and its unit cell translations along the b direction (i.e. 1-x,y+3/2,1-z; 1-x,y+5/2,1-z, etc.). The second choice of biological unit is a pair of beta sheets constructed from chain A and unit cell translations along the b direction (i.e. X,Y,Z; X,Y+1,Z; X,Y+2,Z; etc.) together with a symmetry related sheet formed from -X,1/2+Y,1-Z and its unit cell translations along the b direction (i.e. -x,y+3/2,1-z; -x,y+5/2,1-z; etc.). REMARK 350 displays 5 strands from both sheets for the first choice. ; # _pdbx_phasing_MR.entry_id 4R0U _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.600 _pdbx_phasing_MR.d_res_low_rotation 25.490 _pdbx_phasing_MR.d_res_high_translation 1.600 _pdbx_phasing_MR.d_res_low_translation 25.490 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLY N N N N 14 GLY CA C N N 15 GLY C C N N 16 GLY O O N N 17 GLY OXT O N N 18 GLY H H N N 19 GLY H2 H N N 20 GLY HA2 H N N 21 GLY HA3 H N N 22 GLY HXT H N N 23 HOH O O N N 24 HOH H1 H N N 25 HOH H2 H N N 26 THR N N N N 27 THR CA C N S 28 THR C C N N 29 THR O O N N 30 THR CB C N R 31 THR OG1 O N N 32 THR CG2 C N N 33 THR OXT O N N 34 THR H H N N 35 THR H2 H N N 36 THR HA H N N 37 THR HB H N N 38 THR HG1 H N N 39 THR HG21 H N N 40 THR HG22 H N N 41 THR HG23 H N N 42 THR HXT H N N 43 VAL N N N N 44 VAL CA C N S 45 VAL C C N N 46 VAL O O N N 47 VAL CB C N N 48 VAL CG1 C N N 49 VAL CG2 C N N 50 VAL OXT O N N 51 VAL H H N N 52 VAL H2 H N N 53 VAL HA H N N 54 VAL HB H N N 55 VAL HG11 H N N 56 VAL HG12 H N N 57 VAL HG13 H N N 58 VAL HG21 H N N 59 VAL HG22 H N N 60 VAL HG23 H N N 61 VAL HXT H N N 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLY N CA sing N N 13 GLY N H sing N N 14 GLY N H2 sing N N 15 GLY CA C sing N N 16 GLY CA HA2 sing N N 17 GLY CA HA3 sing N N 18 GLY C O doub N N 19 GLY C OXT sing N N 20 GLY OXT HXT sing N N 21 HOH O H1 sing N N 22 HOH O H2 sing N N 23 THR N CA sing N N 24 THR N H sing N N 25 THR N H2 sing N N 26 THR CA C sing N N 27 THR CA CB sing N N 28 THR CA HA sing N N 29 THR C O doub N N 30 THR C OXT sing N N 31 THR CB OG1 sing N N 32 THR CB CG2 sing N N 33 THR CB HB sing N N 34 THR OG1 HG1 sing N N 35 THR CG2 HG21 sing N N 36 THR CG2 HG22 sing N N 37 THR CG2 HG23 sing N N 38 THR OXT HXT sing N N 39 VAL N CA sing N N 40 VAL N H sing N N 41 VAL N H2 sing N N 42 VAL CA C sing N N 43 VAL CA CB sing N N 44 VAL CA HA sing N N 45 VAL C O doub N N 46 VAL C OXT sing N N 47 VAL CB CG1 sing N N 48 VAL CB CG2 sing N N 49 VAL CB HB sing N N 50 VAL CG1 HG11 sing N N 51 VAL CG1 HG12 sing N N 52 VAL CG1 HG13 sing N N 53 VAL CG2 HG21 sing N N 54 VAL CG2 HG22 sing N N 55 VAL CG2 HG23 sing N N 56 VAL OXT HXT sing N N 57 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'ideal beta strand' # _atom_sites.entry_id 4R0U _atom_sites.fract_transf_matrix[1][1] 0.064168 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010112 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.210881 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039229 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . THR A 1 1 ? -1.175 -1.984 5.065 1.00 31.90 ? 1 THR A N 1 ATOM 2 C CA . THR A 1 1 ? -0.442 -1.664 3.800 1.00 28.55 ? 1 THR A CA 1 ATOM 3 C C . THR A 1 1 ? 0.725 -0.766 4.131 1.00 25.57 ? 1 THR A C 1 ATOM 4 O O . THR A 1 1 ? 0.606 0.129 4.975 1.00 26.52 ? 1 THR A O 1 ATOM 5 C CB . THR A 1 1 ? -1.323 -0.912 2.785 1.00 30.97 ? 1 THR A CB 1 ATOM 6 O OG1 . THR A 1 1 ? -2.489 -1.691 2.472 1.00 25.85 ? 1 THR A OG1 1 ATOM 7 C CG2 . THR A 1 1 ? -0.535 -0.613 1.506 1.00 31.78 ? 1 THR A CG2 1 ATOM 8 N N . GLY A 1 2 ? 1.839 -0.990 3.446 1.00 18.47 ? 2 GLY A N 1 ATOM 9 C CA . GLY A 1 2 ? 3.065 -0.303 3.768 1.00 17.82 ? 2 GLY A CA 1 ATOM 10 C C . GLY A 1 2 ? 3.651 -0.916 5.018 1.00 14.98 ? 2 GLY A C 1 ATOM 11 O O . GLY A 1 2 ? 3.602 -2.132 5.204 1.00 17.04 ? 2 GLY A O 1 ATOM 12 N N . VAL A 1 3 ? 4.191 -0.072 5.884 1.00 12.34 ? 3 VAL A N 1 ATOM 13 C CA . VAL A 1 3 ? 4.831 -0.535 7.104 1.00 10.85 ? 3 VAL A CA 1 ATOM 14 C C . VAL A 1 3 ? 4.083 0.069 8.266 1.00 10.31 ? 3 VAL A C 1 ATOM 15 O O . VAL A 1 3 ? 3.989 1.288 8.375 1.00 10.77 ? 3 VAL A O 1 ATOM 16 C CB . VAL A 1 3 ? 6.300 -0.119 7.123 1.00 11.88 ? 3 VAL A CB 1 ATOM 17 C CG1 . VAL A 1 3 ? 6.995 -0.639 8.358 1.00 12.70 ? 3 VAL A CG1 1 ATOM 18 C CG2 . VAL A 1 3 ? 6.981 -0.641 5.872 1.00 12.94 ? 3 VAL A CG2 1 ATOM 19 N N . THR A 1 4 ? 3.545 -0.784 9.122 1.00 8.78 ? 4 THR A N 1 ATOM 20 C CA . THR A 1 4 ? 2.661 -0.345 10.163 1.00 9.30 ? 4 THR A CA 1 ATOM 21 C C . THR A 1 4 ? 3.038 -0.997 11.461 1.00 8.80 ? 4 THR A C 1 ATOM 22 O O . THR A 1 4 ? 3.188 -2.210 11.534 1.00 9.31 ? 4 THR A O 1 ATOM 23 C CB . THR A 1 4 ? 1.210 -0.709 9.820 1.00 10.28 ? 4 THR A CB 1 ATOM 24 O OG1 . THR A 1 4 ? 0.885 -0.143 8.550 1.00 15.19 ? 4 THR A OG1 1 ATOM 25 C CG2 . THR A 1 4 ? 0.250 -0.180 10.854 1.00 11.88 ? 4 THR A CG2 1 ATOM 26 N N . ALA A 1 5 ? 3.197 -0.180 12.485 1.00 8.24 ? 5 ALA A N 1 ATOM 27 C CA . ALA A 1 5 ? 3.483 -0.681 13.804 1.00 8.70 ? 5 ALA A CA 1 ATOM 28 C C . ALA A 1 5 ? 2.476 -0.036 14.733 1.00 8.82 ? 5 ALA A C 1 ATOM 29 O O . ALA A 1 5 ? 2.330 1.179 14.740 1.00 8.97 ? 5 ALA A O 1 ATOM 30 C CB . ALA A 1 5 ? 4.914 -0.337 14.200 1.00 9.63 ? 5 ALA A CB 1 ATOM 31 N N . VAL A 1 6 ? 1.779 -0.860 15.500 1.00 9.67 ? 6 VAL A N 1 ATOM 32 C CA . VAL A 1 6 ? 0.747 -0.403 16.419 1.00 10.56 ? 6 VAL A CA 1 ATOM 33 C C . VAL A 1 6 ? 0.972 -1.064 17.762 1.00 13.04 ? 6 VAL A C 1 ATOM 34 O O . VAL A 1 6 ? 1.025 -2.274 17.841 1.00 13.74 ? 6 VAL A O 1 ATOM 35 C CB . VAL A 1 6 ? -0.651 -0.798 15.921 1.00 11.93 ? 6 VAL A CB 1 ATOM 36 C CG1 . VAL A 1 6 ? -1.725 -0.264 16.861 1.00 14.13 ? 6 VAL A CG1 1 ATOM 37 C CG2 . VAL A 1 6 ? -0.874 -0.291 14.511 1.00 11.70 ? 6 VAL A CG2 1 ATOM 38 N N . ALA A 1 7 ? 1.111 -0.286 18.825 1.00 16.98 ? 7 ALA A N 1 ATOM 39 C CA . ALA A 1 7 ? 1.355 -0.884 20.153 1.00 21.40 ? 7 ALA A CA 1 ATOM 40 C C . ALA A 1 7 ? 0.088 -1.484 20.771 1.00 28.45 ? 7 ALA A C 1 ATOM 41 O O . ALA A 1 7 ? 0.126 -2.064 21.867 1.00 41.77 ? 7 ALA A O 1 ATOM 42 C CB . ALA A 1 7 ? 2.002 0.114 21.100 1.00 28.04 ? 7 ALA A CB 1 ATOM 43 O OXT . ALA A 1 7 ? -0.998 -1.446 20.187 1.00 26.66 ? 7 ALA A OXT 1 HETATM 44 O O . HOH B 2 . ? 1.096 2.123 6.990 1.00 15.46 ? 101 HOH A O 1 HETATM 45 O O . HOH B 2 . ? 2.890 -2.582 1.283 1.00 19.26 ? 102 HOH A O 1 HETATM 46 O O . HOH B 2 . ? 5.705 -2.678 2.820 1.00 19.31 ? 103 HOH A O 1 HETATM 47 O O . HOH B 2 . ? 6.840 -0.231 2.170 1.00 26.87 ? 104 HOH A O 1 HETATM 48 O O . HOH B 2 . ? -6.061 -2.599 0.408 1.00 22.68 ? 105 HOH A O 1 HETATM 49 O O . HOH B 2 . ? -6.146 -0.237 1.896 1.00 21.37 ? 106 HOH A O 1 HETATM 50 O O . HOH B 2 . ? -3.213 -2.550 0.041 1.00 25.75 ? 107 HOH A O 1 #