0.022558
0.000000
0.000000
0.000000
0.016168
0.000000
0.000000
0.000000
0.012974
0.00000
0.00000
0.00000
Palencia, A.
Li, X.
Alley, M.R.K.
Ding, C.
Easom, E.E.
Hernandez, V.
Meewan, M.
Mohan, M.
Rock, F.L.
Franzblau, S.G.
Wang, Y.
Lenaerts, A.J.
Parish, T.
Cooper, C.B.
Waters, M.G.
Ma, Z.
Mendoza, A.
Barros, D.
Cusack, S.
Plattner, J.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
44.330
61.850
77.080
C20 H23 B N6 O9 P -3
533.216
3-AMINOMETHYL-7-(ETHOXY)-3H-BENZO[C][1,2]OXABOROL-1-OL modified adenosine
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
B
N
2
N
P
Y
3
N
N
N
4
N
O
Y
5
N
C
Y
6
N
N
Y
7
N
C
Y
8
N
C
Y
9
N
C
N
10
N
N
Y
11
N
N
Y
12
N
C
Y
13
N
N
N
14
R
C
N
15
S
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
N
22
N
O
N
23
R
C
N
24
N
O
N
25
N
O
N
26
S
C
N
27
N
O
N
28
N
C
N
29
N
N
N
30
N
O
N
31
N
C
N
32
N
C
N
33
N
O
N
34
R
C
N
35
N
O
N
36
N
C
N
37
N
O
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
N
N
62
S
C
N
63
N
C
N
64
N
O
N
65
N
C
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
N
N
82
N
C
N
83
N
N
N
84
N
N
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
S
C
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
C
N
107
N
O
N
108
N
N
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
N
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
Y
198
N
C
Y
199
N
N
Y
200
N
C
Y
201
N
C
Y
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
S
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
N
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
S
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
O
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
R
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
N
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
N
433
N
C
N
434
N
C
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
doub
N
7
N
sing
N
8
N
sing
Y
9
N
doub
Y
10
N
sing
N
11
N
sing
Y
12
N
sing
Y
13
N
doub
Y
14
N
sing
Y
15
N
sing
Y
16
N
doub
Y
17
N
sing
N
18
N
sing
Y
19
N
doub
Y
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
Y
26
N
doub
Y
27
N
sing
Y
28
N
sing
Y
29
N
doub
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
Y
201
N
sing
Y
202
N
doub
Y
203
N
doub
N
204
N
sing
Y
205
N
sing
N
206
N
sing
Y
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
Y
309
N
doub
Y
310
N
sing
Y
311
N
sing
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
US
Antimicrob.Agents Chemother.
AMACCQ
0788
0066-4804
60
6271
10.1128/AAC.01339-16
27503647
Discovery of Novel Oral Protein Synthesis Inhibitors of Mycobacterium Tuberculosis that Target Leucyl-tRNA Synthetase.
2016
10.2210/pdb5agr/pdb
pdb_00005agr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-07-03
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.87260
1.0
ID23-2
ESRF
0.87260
SYNCHROTRON
ESRF BEAMLINE ID23-2
24890.756
LEUCINE--TRNA LIGASE
6.1.1.4
EDITING DOMAIN (CP1), RESIDUES 309-513
1
man
polymer
149.211
METHIONINE
1
syn
non-polymer
131.173
LEUCINE
1
syn
non-polymer
533.216
3-AMINOMETHYL-7-(ETHOXY)-3H-BENZO[C][1,2]OXABOROL-1-OL modified adenosine
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
267
nat
water
LEUCYL-TRNA SYNTHETASE, LEURS, LEUCYL-TRNA SYNTHETASE
no
no
MKHHHHHHPMSDYDIPTTENLYFQGAMGRSTGAVALFSARAASDDGFEVDIEVFTTRPDTLFGATYLVLAPEHDLVDELV
AASWPAGVNPLWTYGGGTPGEAIAAYRRAIAAKSDLERQESREKTGVFLGSYAINPANGEPVPIFIADYVLAGYGTGAIM
AVPGHDQRDWDFARAFGLPIVEVIAGGNISESAYTGDGILVNSDYLNGMSVPAAKRAIVDRLESAGRGRARI
MKHHHHHHPMSDYDIPTTENLYFQGAMGRSTGAVALFSARAASDDGFEVDIEVFTTRPDTLFGATYLVLAPEHDLVDELV
AASWPAGVNPLWTYGGGTPGEAIAAYRRAIAAKSDLERQESREKTGVFLGSYAINPANGEPVPIFIADYVLAGYGTGAIM
AVPGHDQRDWDFARAFGLPIVEVIAGGNISESAYTGDGILVNSDYLNGMSVPAAKRAIVDRLESAGRGRARI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
H37RV
sample
25618
83332
MYCOBACTERIUM TUBERCULOSIS
469008
ESCHERICHIA COLI
BL21(DE3)
RIL
PETM-11
1
2.1
42.1
NONE
5.5
0.1 M BIS-TRIS PH 5.5, 17% W/V PEG 10000, 0.2 M AMMONIUM ACETATE
pdbx_unobs_or_zero_occ_atoms
pdbx_validate_close_contact
struct_conn
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Database references
Advisory
Data collection
Derived calculations
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2016-03-02
1
1
2016-08-24
1
2
2016-10-05
1
3
2018-06-20
1
4
2024-01-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH THE ADDUCT AN5634-AMP
CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH THE ADDUCT AN6426-AMP
PDBE
Y
PDBE
2015-02-03
REL
REL
1
A
O
HOH
2001
5.88
1
A
O
HOH
2193
7.47
1
A
O
HOH
2198
7.02
1
A
O
HOH
2251
6.57
MET
METHIONINE
LEU
LEUCINE
A52
3-AMINOMETHYL-7-(ETHOXY)-3H-BENZO[C][1,2]OXABOROL-1-OL modified adenosine
EDO
1,2-ETHANEDIOL
HOH
water
CONTAINS A N-TERM SEQUENCE BELONGING TO PETM-11 EMBL
VECTOR
2AJG
PDB ENTRY 2AJG
PDB
experimental model
MET
1
2
MET
MET
1
A
LEU
2
3
LEU
LEU
2
A
A52
1514
4
A52
A52
1514
A
EDO
1515
5
EDO
EDO
1515
A
HOH
2001
6
HOH
HOH
2001
A
HOH
2002
6
HOH
HOH
2002
A
HOH
2003
6
HOH
HOH
2003
A
HOH
2004
6
HOH
HOH
2004
A
HOH
2005
6
HOH
HOH
2005
A
HOH
2006
6
HOH
HOH
2006
A
HOH
2007
6
HOH
HOH
2007
A
HOH
2008
6
HOH
HOH
2008
A
HOH
2009
6
HOH
HOH
2009
A
HOH
2010
6
HOH
HOH
2010
A
HOH
2011
6
HOH
HOH
2011
A
HOH
2012
6
HOH
HOH
2012
A
HOH
2013
6
HOH
HOH
2013
A
HOH
2014
6
HOH
HOH
2014
A
HOH
2015
6
HOH
HOH
2015
A
HOH
2016
6
HOH
HOH
2016
A
HOH
2017
6
HOH
HOH
2017
A
HOH
2018
6
HOH
HOH
2018
A
HOH
2019
6
HOH
HOH
2019
A
HOH
2020
6
HOH
HOH
2020
A
HOH
2021
6
HOH
HOH
2021
A
HOH
2022
6
HOH
HOH
2022
A
HOH
2023
6
HOH
HOH
2023
A
HOH
2024
6
HOH
HOH
2024
A
HOH
2025
6
HOH
HOH
2025
A
HOH
2026
6
HOH
HOH
2026
A
HOH
2027
6
HOH
HOH
2027
A
HOH
2028
6
HOH
HOH
2028
A
HOH
2029
6
HOH
HOH
2029
A
HOH
2030
6
HOH
HOH
2030
A
HOH
2031
6
HOH
HOH
2031
A
HOH
2032
6
HOH
HOH
2032
A
HOH
2033
6
HOH
HOH
2033
A
HOH
2034
6
HOH
HOH
2034
A
HOH
2035
6
HOH
HOH
2035
A
HOH
2036
6
HOH
HOH
2036
A
HOH
2037
6
HOH
HOH
2037
A
HOH
2038
6
HOH
HOH
2038
A
HOH
2039
6
HOH
HOH
2039
A
HOH
2040
6
HOH
HOH
2040
A
HOH
2041
6
HOH
HOH
2041
A
HOH
2042
6
HOH
HOH
2042
A
HOH
2043
6
HOH
HOH
2043
A
HOH
2044
6
HOH
HOH
2044
A
HOH
2045
6
HOH
HOH
2045
A
HOH
2046
6
HOH
HOH
2046
A
HOH
2047
6
HOH
HOH
2047
A
HOH
2048
6
HOH
HOH
2048
A
HOH
2049
6
HOH
HOH
2049
A
HOH
2050
6
HOH
HOH
2050
A
HOH
2051
6
HOH
HOH
2051
A
HOH
2052
6
HOH
HOH
2052
A
HOH
2053
6
HOH
HOH
2053
A
HOH
2054
6
HOH
HOH
2054
A
HOH
2055
6
HOH
HOH
2055
A
HOH
2056
6
HOH
HOH
2056
A
HOH
2057
6
HOH
HOH
2057
A
HOH
2058
6
HOH
HOH
2058
A
HOH
2059
6
HOH
HOH
2059
A
HOH
2060
6
HOH
HOH
2060
A
HOH
2061
6
HOH
HOH
2061
A
HOH
2062
6
HOH
HOH
2062
A
HOH
2063
6
HOH
HOH
2063
A
HOH
2064
6
HOH
HOH
2064
A
HOH
2065
6
HOH
HOH
2065
A
HOH
2066
6
HOH
HOH
2066
A
HOH
2067
6
HOH
HOH
2067
A
HOH
2068
6
HOH
HOH
2068
A
HOH
2069
6
HOH
HOH
2069
A
HOH
2070
6
HOH
HOH
2070
A
HOH
2071
6
HOH
HOH
2071
A
HOH
2072
6
HOH
HOH
2072
A
HOH
2073
6
HOH
HOH
2073
A
HOH
2074
6
HOH
HOH
2074
A
HOH
2075
6
HOH
HOH
2075
A
HOH
2076
6
HOH
HOH
2076
A
HOH
2077
6
HOH
HOH
2077
A
HOH
2078
6
HOH
HOH
2078
A
HOH
2079
6
HOH
HOH
2079
A
HOH
2080
6
HOH
HOH
2080
A
HOH
2081
6
HOH
HOH
2081
A
HOH
2082
6
HOH
HOH
2082
A
HOH
2083
6
HOH
HOH
2083
A
HOH
2084
6
HOH
HOH
2084
A
HOH
2085
6
HOH
HOH
2085
A
HOH
2086
6
HOH
HOH
2086
A
HOH
2087
6
HOH
HOH
2087
A
HOH
2088
6
HOH
HOH
2088
A
HOH
2089
6
HOH
HOH
2089
A
HOH
2090
6
HOH
HOH
2090
A
HOH
2091
6
HOH
HOH
2091
A
HOH
2092
6
HOH
HOH
2092
A
HOH
2093
6
HOH
HOH
2093
A
HOH
2094
6
HOH
HOH
2094
A
HOH
2095
6
HOH
HOH
2095
A
HOH
2096
6
HOH
HOH
2096
A
HOH
2097
6
HOH
HOH
2097
A
HOH
2098
6
HOH
HOH
2098
A
HOH
2099
6
HOH
HOH
2099
A
HOH
2100
6
HOH
HOH
2100
A
HOH
2101
6
HOH
HOH
2101
A
HOH
2102
6
HOH
HOH
2102
A
HOH
2103
6
HOH
HOH
2103
A
HOH
2104
6
HOH
HOH
2104
A
HOH
2105
6
HOH
HOH
2105
A
HOH
2106
6
HOH
HOH
2106
A
HOH
2107
6
HOH
HOH
2107
A
HOH
2108
6
HOH
HOH
2108
A
HOH
2109
6
HOH
HOH
2109
A
HOH
2110
6
HOH
HOH
2110
A
HOH
2111
6
HOH
HOH
2111
A
HOH
2112
6
HOH
HOH
2112
A
HOH
2113
6
HOH
HOH
2113
A
HOH
2114
6
HOH
HOH
2114
A
HOH
2115
6
HOH
HOH
2115
A
HOH
2116
6
HOH
HOH
2116
A
HOH
2117
6
HOH
HOH
2117
A
HOH
2118
6
HOH
HOH
2118
A
HOH
2119
6
HOH
HOH
2119
A
HOH
2120
6
HOH
HOH
2120
A
HOH
2121
6
HOH
HOH
2121
A
HOH
2122
6
HOH
HOH
2122
A
HOH
2123
6
HOH
HOH
2123
A
HOH
2124
6
HOH
HOH
2124
A
HOH
2125
6
HOH
HOH
2125
A
HOH
2126
6
HOH
HOH
2126
A
HOH
2127
6
HOH
HOH
2127
A
HOH
2128
6
HOH
HOH
2128
A
HOH
2129
6
HOH
HOH
2129
A
HOH
2130
6
HOH
HOH
2130
A
HOH
2131
6
HOH
HOH
2131
A
HOH
2132
6
HOH
HOH
2132
A
HOH
2133
6
HOH
HOH
2133
A
HOH
2134
6
HOH
HOH
2134
A
HOH
2135
6
HOH
HOH
2135
A
HOH
2136
6
HOH
HOH
2136
A
HOH
2137
6
HOH
HOH
2137
A
HOH
2138
6
HOH
HOH
2138
A
HOH
2139
6
HOH
HOH
2139
A
HOH
2140
6
HOH
HOH
2140
A
HOH
2141
6
HOH
HOH
2141
A
HOH
2142
6
HOH
HOH
2142
A
HOH
2143
6
HOH
HOH
2143
A
HOH
2144
6
HOH
HOH
2144
A
HOH
2145
6
HOH
HOH
2145
A
HOH
2146
6
HOH
HOH
2146
A
HOH
2147
6
HOH
HOH
2147
A
HOH
2148
6
HOH
HOH
2148
A
HOH
2149
6
HOH
HOH
2149
A
HOH
2150
6
HOH
HOH
2150
A
HOH
2151
6
HOH
HOH
2151
A
HOH
2152
6
HOH
HOH
2152
A
HOH
2153
6
HOH
HOH
2153
A
HOH
2154
6
HOH
HOH
2154
A
HOH
2155
6
HOH
HOH
2155
A
HOH
2156
6
HOH
HOH
2156
A
HOH
2157
6
HOH
HOH
2157
A
HOH
2158
6
HOH
HOH
2158
A
HOH
2159
6
HOH
HOH
2159
A
HOH
2160
6
HOH
HOH
2160
A
HOH
2161
6
HOH
HOH
2161
A
HOH
2162
6
HOH
HOH
2162
A
HOH
2163
6
HOH
HOH
2163
A
HOH
2164
6
HOH
HOH
2164
A
HOH
2165
6
HOH
HOH
2165
A
HOH
2166
6
HOH
HOH
2166
A
HOH
2167
6
HOH
HOH
2167
A
HOH
2168
6
HOH
HOH
2168
A
HOH
2169
6
HOH
HOH
2169
A
HOH
2170
6
HOH
HOH
2170
A
HOH
2171
6
HOH
HOH
2171
A
HOH
2172
6
HOH
HOH
2172
A
HOH
2173
6
HOH
HOH
2173
A
HOH
2174
6
HOH
HOH
2174
A
HOH
2175
6
HOH
HOH
2175
A
HOH
2176
6
HOH
HOH
2176
A
HOH
2177
6
HOH
HOH
2177
A
HOH
2178
6
HOH
HOH
2178
A
HOH
2179
6
HOH
HOH
2179
A
HOH
2180
6
HOH
HOH
2180
A
HOH
2181
6
HOH
HOH
2181
A
HOH
2182
6
HOH
HOH
2182
A
HOH
2183
6
HOH
HOH
2183
A
HOH
2184
6
HOH
HOH
2184
A
HOH
2185
6
HOH
HOH
2185
A
HOH
2186
6
HOH
HOH
2186
A
HOH
2187
6
HOH
HOH
2187
A
HOH
2188
6
HOH
HOH
2188
A
HOH
2189
6
HOH
HOH
2189
A
HOH
2190
6
HOH
HOH
2190
A
HOH
2191
6
HOH
HOH
2191
A
HOH
2192
6
HOH
HOH
2192
A
HOH
2193
6
HOH
HOH
2193
A
HOH
2194
6
HOH
HOH
2194
A
HOH
2195
6
HOH
HOH
2195
A
HOH
2196
6
HOH
HOH
2196
A
HOH
2197
6
HOH
HOH
2197
A
HOH
2198
6
HOH
HOH
2198
A
HOH
2199
6
HOH
HOH
2199
A
HOH
2200
6
HOH
HOH
2200
A
HOH
2201
6
HOH
HOH
2201
A
HOH
2202
6
HOH
HOH
2202
A
HOH
2203
6
HOH
HOH
2203
A
HOH
2204
6
HOH
HOH
2204
A
HOH
2205
6
HOH
HOH
2205
A
HOH
2206
6
HOH
HOH
2206
A
HOH
2207
6
HOH
HOH
2207
A
HOH
2208
6
HOH
HOH
2208
A
HOH
2209
6
HOH
HOH
2209
A
HOH
2210
6
HOH
HOH
2210
A
HOH
2211
6
HOH
HOH
2211
A
HOH
2212
6
HOH
HOH
2212
A
HOH
2213
6
HOH
HOH
2213
A
HOH
2214
6
HOH
HOH
2214
A
HOH
2215
6
HOH
HOH
2215
A
HOH
2216
6
HOH
HOH
2216
A
HOH
2217
6
HOH
HOH
2217
A
HOH
2218
6
HOH
HOH
2218
A
HOH
2219
6
HOH
HOH
2219
A
HOH
2220
6
HOH
HOH
2220
A
HOH
2221
6
HOH
HOH
2221
A
HOH
2222
6
HOH
HOH
2222
A
HOH
2223
6
HOH
HOH
2223
A
HOH
2224
6
HOH
HOH
2224
A
HOH
2225
6
HOH
HOH
2225
A
HOH
2226
6
HOH
HOH
2226
A
HOH
2227
6
HOH
HOH
2227
A
HOH
2228
6
HOH
HOH
2228
A
HOH
2229
6
HOH
HOH
2229
A
HOH
2230
6
HOH
HOH
2230
A
HOH
2231
6
HOH
HOH
2231
A
HOH
2232
6
HOH
HOH
2232
A
HOH
2233
6
HOH
HOH
2233
A
HOH
2234
6
HOH
HOH
2234
A
HOH
2235
6
HOH
HOH
2235
A
HOH
2236
6
HOH
HOH
2236
A
HOH
2237
6
HOH
HOH
2237
A
HOH
2238
6
HOH
HOH
2238
A
HOH
2239
6
HOH
HOH
2239
A
HOH
2240
6
HOH
HOH
2240
A
HOH
2241
6
HOH
HOH
2241
A
HOH
2242
6
HOH
HOH
2242
A
HOH
2243
6
HOH
HOH
2243
A
HOH
2244
6
HOH
HOH
2244
A
HOH
2245
6
HOH
HOH
2245
A
HOH
2246
6
HOH
HOH
2246
A
HOH
2247
6
HOH
HOH
2247
A
HOH
2248
6
HOH
HOH
2248
A
HOH
2249
6
HOH
HOH
2249
A
HOH
2250
6
HOH
HOH
2250
A
HOH
2251
6
HOH
HOH
2251
A
HOH
2252
6
HOH
HOH
2252
A
HOH
2253
6
HOH
HOH
2253
A
HOH
2254
6
HOH
HOH
2254
A
HOH
2255
6
HOH
HOH
2255
A
HOH
2256
6
HOH
HOH
2256
A
HOH
2257
6
HOH
HOH
2257
A
HOH
2258
6
HOH
HOH
2258
A
HOH
2259
6
HOH
HOH
2259
A
HOH
2260
6
HOH
HOH
2260
A
HOH
2261
6
HOH
HOH
2261
A
HOH
2262
6
HOH
HOH
2262
A
HOH
2263
6
HOH
HOH
2263
A
HOH
2264
6
HOH
HOH
2264
A
HOH
2265
6
HOH
HOH
2265
A
HOH
2266
6
HOH
HOH
2266
A
HOH
2267
6
HOH
HOH
2267
A
n
1
282
A
n
2
283
A
n
3
284
A
n
4
285
A
n
5
286
A
n
6
287
A
n
7
288
A
n
8
289
A
n
9
290
A
n
10
291
A
n
11
292
A
n
12
293
A
n
13
294
A
n
14
295
A
n
15
296
A
n
16
297
A
n
17
298
A
n
18
299
A
n
19
300
A
n
20
301
A
n
21
302
A
n
22
303
A
n
23
304
A
n
24
305
A
n
25
306
A
n
26
307
A
n
27
308
A
n
28
309
A
n
29
310
A
n
30
311
A
n
31
312
A
GLY
313
n
32
GLY
313
A
ALA
314
n
33
ALA
314
A
VAL
315
n
34
VAL
315
A
ALA
316
n
35
ALA
316
A
LEU
317
n
36
LEU
317
A
PHE
318
n
37
PHE
318
A
SER
319
n
38
SER
319
A
ALA
320
n
39
ALA
320
A
ARG
321
n
40
ARG
321
A
ALA
322
n
41
ALA
322
A
n
42
323
A
n
43
324
A
n
44
325
A
n
45
326
A
n
46
327
A
n
47
328
A
n
48
329
A
VAL
330
n
49
VAL
330
A
ASP
331
n
50
ASP
331
A
ILE
332
n
51
ILE
332
A
GLU
333
n
52
GLU
333
A
VAL
334
n
53
VAL
334
A
PHE
335
n
54
PHE
335
A
THR
336
n
55
THR
336
A
THR
337
n
56
THR
337
A
ARG
338
n
57
ARG
338
A
PRO
339
n
58
PRO
339
A
ASP
340
n
59
ASP
340
A
THR
341
n
60
THR
341
A
LEU
342
n
61
LEU
342
A
PHE
343
n
62
PHE
343
A
GLY
344
n
63
GLY
344
A
ALA
345
n
64
ALA
345
A
THR
346
n
65
THR
346
A
TYR
347
n
66
TYR
347
A
LEU
348
n
67
LEU
348
A
VAL
349
n
68
VAL
349
A
LEU
350
n
69
LEU
350
A
ALA
351
n
70
ALA
351
A
PRO
352
n
71
PRO
352
A
GLU
353
n
72
GLU
353
A
HIS
354
n
73
HIS
354
A
ASP
355
n
74
ASP
355
A
LEU
356
n
75
LEU
356
A
VAL
357
n
76
VAL
357
A
ASP
358
n
77
ASP
358
A
GLU
359
n
78
GLU
359
A
LEU
360
n
79
LEU
360
A
VAL
361
n
80
VAL
361
A
ALA
362
n
81
ALA
362
A
ALA
363
n
82
ALA
363
A
SER
364
n
83
SER
364
A
TRP
365
n
84
TRP
365
A
PRO
366
n
85
PRO
366
A
ALA
367
n
86
ALA
367
A
GLY
368
n
87
GLY
368
A
VAL
369
n
88
VAL
369
A
ASN
370
n
89
ASN
370
A
PRO
371
n
90
PRO
371
A
LEU
372
n
91
LEU
372
A
TRP
373
n
92
TRP
373
A
THR
374
n
93
THR
374
A
TYR
375
n
94
TYR
375
A
GLY
376
n
95
GLY
376
A
GLY
377
n
96
GLY
377
A
GLY
378
n
97
GLY
378
A
THR
379
n
98
THR
379
A
PRO
380
n
99
PRO
380
A
GLY
381
n
100
GLY
381
A
GLU
382
n
101
GLU
382
A
ALA
383
n
102
ALA
383
A
ILE
384
n
103
ILE
384
A
ALA
385
n
104
ALA
385
A
ALA
386
n
105
ALA
386
A
TYR
387
n
106
TYR
387
A
ARG
388
n
107
ARG
388
A
ARG
389
n
108
ARG
389
A
ALA
390
n
109
ALA
390
A
ILE
391
n
110
ILE
391
A
ALA
392
n
111
ALA
392
A
ALA
393
n
112
ALA
393
A
LYS
394
n
113
LYS
394
A
SER
395
n
114
SER
395
A
ASP
396
n
115
ASP
396
A
LEU
397
n
116
LEU
397
A
GLU
398
n
117
GLU
398
A
ARG
399
n
118
ARG
399
A
GLN
400
n
119
GLN
400
A
n
120
401
A
n
121
402
A
n
122
403
A
n
123
404
A
LYS
405
n
124
LYS
405
A
THR
406
n
125
THR
406
A
GLY
407
n
126
GLY
407
A
VAL
408
n
127
VAL
408
A
PHE
409
n
128
PHE
409
A
LEU
410
n
129
LEU
410
A
GLY
411
n
130
GLY
411
A
SER
412
n
131
SER
412
A
TYR
413
n
132
TYR
413
A
ALA
414
n
133
ALA
414
A
ILE
415
n
134
ILE
415
A
ASN
416
n
135
ASN
416
A
PRO
417
n
136
PRO
417
A
ALA
418
n
137
ALA
418
A
ASN
419
n
138
ASN
419
A
GLY
420
n
139
GLY
420
A
GLU
421
n
140
GLU
421
A
PRO
422
n
141
PRO
422
A
VAL
423
n
142
VAL
423
A
PRO
424
n
143
PRO
424
A
ILE
425
n
144
ILE
425
A
PHE
426
n
145
PHE
426
A
ILE
427
n
146
ILE
427
A
ALA
428
n
147
ALA
428
A
ASP
429
n
148
ASP
429
A
TYR
430
n
149
TYR
430
A
VAL
431
n
150
VAL
431
A
LEU
432
n
151
LEU
432
A
ALA
433
n
152
ALA
433
A
GLY
434
n
153
GLY
434
A
TYR
435
n
154
TYR
435
A
GLY
436
n
155
GLY
436
A
THR
437
n
156
THR
437
A
GLY
438
n
157
GLY
438
A
ALA
439
n
158
ALA
439
A
ILE
440
n
159
ILE
440
A
MET
441
n
160
MET
441
A
ALA
442
n
161
ALA
442
A
VAL
443
n
162
VAL
443
A
PRO
444
n
163
PRO
444
A
GLY
445
n
164
GLY
445
A
HIS
446
n
165
HIS
446
A
ASP
447
n
166
ASP
447
A
GLN
448
n
167
GLN
448
A
ARG
449
n
168
ARG
449
A
ASP
450
n
169
ASP
450
A
TRP
451
n
170
TRP
451
A
ASP
452
n
171
ASP
452
A
PHE
453
n
172
PHE
453
A
ALA
454
n
173
ALA
454
A
ARG
455
n
174
ARG
455
A
ALA
456
n
175
ALA
456
A
PHE
457
n
176
PHE
457
A
GLY
458
n
177
GLY
458
A
LEU
459
n
178
LEU
459
A
PRO
460
n
179
PRO
460
A
ILE
461
n
180
ILE
461
A
VAL
462
n
181
VAL
462
A
GLU
463
n
182
GLU
463
A
VAL
464
n
183
VAL
464
A
ILE
465
n
184
ILE
465
A
ALA
466
n
185
ALA
466
A
GLY
467
n
186
GLY
467
A
GLY
468
n
187
GLY
468
A
ASN
469
n
188
ASN
469
A
ILE
470
n
189
ILE
470
A
SER
471
n
190
SER
471
A
GLU
472
n
191
GLU
472
A
SER
473
n
192
SER
473
A
ALA
474
n
193
ALA
474
A
TYR
475
n
194
TYR
475
A
THR
476
n
195
THR
476
A
GLY
477
n
196
GLY
477
A
ASP
478
n
197
ASP
478
A
GLY
479
n
198
GLY
479
A
ILE
480
n
199
ILE
480
A
LEU
481
n
200
LEU
481
A
VAL
482
n
201
VAL
482
A
ASN
483
n
202
ASN
483
A
SER
484
n
203
SER
484
A
ASP
485
n
204
ASP
485
A
TYR
486
n
205
TYR
486
A
LEU
487
n
206
LEU
487
A
ASN
488
n
207
ASN
488
A
GLY
489
n
208
GLY
489
A
MET
490
n
209
MET
490
A
SER
491
n
210
SER
491
A
VAL
492
n
211
VAL
492
A
PRO
493
n
212
PRO
493
A
ALA
494
n
213
ALA
494
A
ALA
495
n
214
ALA
495
A
LYS
496
n
215
LYS
496
A
ARG
497
n
216
ARG
497
A
ALA
498
n
217
ALA
498
A
ILE
499
n
218
ILE
499
A
VAL
500
n
219
VAL
500
A
ASP
501
n
220
ASP
501
A
ARG
502
n
221
ARG
502
A
LEU
503
n
222
LEU
503
A
GLU
504
n
223
GLU
504
A
SER
505
n
224
SER
505
A
ALA
506
n
225
ALA
506
A
GLY
507
n
226
GLY
507
A
ARG
508
n
227
ARG
508
A
GLY
509
n
228
GLY
509
A
ARG
510
n
229
ARG
510
A
ALA
511
n
230
ALA
511
A
ARG
512
n
231
ARG
512
A
ILE
513
n
232
ILE
513
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
336
A
N
THR
55
A
O
ALA
314
A
O
ALA
33
A
N
ALA
442
A
N
ALA
161
A
O
TYR
347
A
O
TYR
66
A
N
LEU
348
A
N
LEU
67
A
O
PRO
424
A
O
PRO
143
A
N
ILE
427
A
N
ILE
146
A
O
VAL
408
A
O
VAL
127
A
N
ILE
415
A
N
ILE
134
A
O
SER
319
A
O
SER
38
A
N
VAL
315
A
N
VAL
34
A
O
ARG
510
A
O
ARG
229
A
N
ALA
442
A
N
ALA
161
A
O
TYR
347
A
O
TYR
66
A
N
LEU
348
A
N
LEU
67
A
O
PRO
424
A
O
PRO
143
A
N
ILE
427
A
N
ILE
146
A
O
VAL
408
A
O
VAL
127
A
N
ILE
415
A
N
ILE
134
A
O
SER
319
A
O
SER
38
A
N
PHE
318
A
N
PHE
37
A
O
ILE
332
A
O
ILE
51
A
N
ARG
510
A
N
ARG
229
A
O
VAL
315
A
O
VAL
34
A
N
ALA
466
A
N
ALA
185
A
O
ILE
480
A
O
ILE
199
1
A
OXT
MET
1
B
OXT
MET
1
1
N
1
A
OXT
LEU
2
C
OXT
LEU
1
1
N
1
A
MET
282
A
MET
1
1
Y
1
A
LYS
283
A
LYS
2
1
Y
1
A
HIS
284
A
HIS
3
1
Y
1
A
HIS
285
A
HIS
4
1
Y
1
A
HIS
286
A
HIS
5
1
Y
1
A
HIS
287
A
HIS
6
1
Y
1
A
HIS
288
A
HIS
7
1
Y
1
A
HIS
289
A
HIS
8
1
Y
1
A
PRO
290
A
PRO
9
1
Y
1
A
MET
291
A
MET
10
1
Y
1
A
SER
292
A
SER
11
1
Y
1
A
ASP
293
A
ASP
12
1
Y
1
A
TYR
294
A
TYR
13
1
Y
1
A
ASP
295
A
ASP
14
1
Y
1
A
ILE
296
A
ILE
15
1
Y
1
A
PRO
297
A
PRO
16
1
Y
1
A
THR
298
A
THR
17
1
Y
1
A
THR
299
A
THR
18
1
Y
1
A
GLU
300
A
GLU
19
1
Y
1
A
ASN
301
A
ASN
20
1
Y
1
A
LEU
302
A
LEU
21
1
Y
1
A
TYR
303
A
TYR
22
1
Y
1
A
PHE
304
A
PHE
23
1
Y
1
A
GLN
305
A
GLN
24
1
Y
1
A
GLY
306
A
GLY
25
1
Y
1
A
ALA
307
A
ALA
26
1
Y
1
A
MET
308
A
MET
27
1
Y
1
A
GLY
309
A
GLY
28
1
Y
1
A
ARG
310
A
ARG
29
1
Y
1
A
SER
311
A
SER
30
1
Y
1
A
THR
312
A
THR
31
1
Y
1
A
ALA
323
A
ALA
42
1
Y
1
A
SER
324
A
SER
43
1
Y
1
A
ASP
325
A
ASP
44
1
Y
1
A
ASP
326
A
ASP
45
1
Y
1
A
GLY
327
A
GLY
46
1
Y
1
A
PHE
328
A
PHE
47
1
Y
1
A
GLU
329
A
GLU
48
1
Y
1
A
GLU
401
A
GLU
120
1
Y
1
A
SER
402
A
SER
121
1
Y
1
A
ARG
403
A
ARG
122
1
Y
1
A
GLU
404
A
GLU
123
1
Y
1
A
A
C
N
MET
LEU
1
2
1.33
1
A
ASP
485
49.45
-116.54
18.222
0.54
0.00
0.00
0.16
0.00
-0.70
0.968
0.965
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. VALUES REFINED INDIVIDUALLY
0.19657
0.16915
0.17059
1.30
38.54
2668
48494
5.2
96.76
1.673
0.032
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.054
0.051
0.80
0.80
1.40
PDB ENTRY 2AJG
MAXIMUM LIKELIHOOD
MASK
1.30
38.54
267
1738
57
0
1414
0.008
0.022
1591
1.511
1.994
2187
5.716
5.000
211
28.860
22.286
70
13.351
15.000
229
10.337
15.000
17
0.147
0.200
241
0.006
0.021
1244
0.845
1.500
987
1.475
2.000
1578
2.104
3.000
604
3.203
4.500
597
0.940
3.000
1591
0.279
0.239
1.334
213
3603
20
98.94
1.30
35.50
5AGR
48494
2.0
0.05
1
14.40
4.3
96.8
0.98
1.30
1.33
1.90
1
4.0
98.9
refinement
REFMAC
5.5.0102
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
Crystal structure of the LeuRS editing domain of Mycobacterium tuberculosis in complex with the adduct (S)-3-(Aminomethyl)-7-ethoxybenzo[c][1,2]oxaborol-1(3H)-ol-AMP
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
ARG
338
A
ARG
57
HELX_P
A
ALA
345
A
ALA
64
5
1
8
A
LEU
356
A
LEU
75
HELX_P
A
VAL
361
A
VAL
80
1
2
6
A
ASN
370
A
ASN
89
HELX_P
A
THR
374
A
THR
93
5
3
5
A
THR
379
A
THR
98
HELX_P
A
ALA
392
A
ALA
111
1
4
14
A
SER
395
A
SER
114
HELX_P
A
GLN
400
A
GLN
119
1
5
6
A
ASP
447
A
ASP
166
HELX_P
A
GLY
458
A
GLY
177
1
6
12
A
SER
484
A
SER
203
HELX_P
A
ASN
488
A
ASN
207
5
7
5
A
SER
491
A
SER
210
HELX_P
A
ALA
506
A
ALA
225
1
8
16
LIGASE
LIGASE, ATP + L-LEUCINE + TRNA(LEU) GIVES AMP + DIPHOSPHATE + L-LEUCYL- TRNA(LEU) AMINOACYL-TRNA EDITING ACTIVITY, AMINOACYL-TRNA SYNTHETASE, PROTEIN BIOSYNTHESIS, NOVEL BORON INHIBITORS OF LEURS
SYL_MYCTU
UNP
1
P9WFV1
309
513
5AGR
309
513
P9WFV1
A
1
28
232
1
expression tag
MET
282
5AGR
A
P9WFV1
UNP
1
1
expression tag
LYS
283
5AGR
A
P9WFV1
UNP
2
1
expression tag
HIS
284
5AGR
A
P9WFV1
UNP
3
1
expression tag
HIS
285
5AGR
A
P9WFV1
UNP
4
1
expression tag
HIS
286
5AGR
A
P9WFV1
UNP
5
1
expression tag
HIS
287
5AGR
A
P9WFV1
UNP
6
1
expression tag
HIS
288
5AGR
A
P9WFV1
UNP
7
1
expression tag
HIS
289
5AGR
A
P9WFV1
UNP
8
1
expression tag
PRO
290
5AGR
A
P9WFV1
UNP
9
1
expression tag
MET
291
5AGR
A
P9WFV1
UNP
10
1
expression tag
SER
292
5AGR
A
P9WFV1
UNP
11
1
expression tag
ASP
293
5AGR
A
P9WFV1
UNP
12
1
expression tag
TYR
294
5AGR
A
P9WFV1
UNP
13
1
expression tag
ASP
295
5AGR
A
P9WFV1
UNP
14
1
expression tag
ILE
296
5AGR
A
P9WFV1
UNP
15
1
expression tag
PRO
297
5AGR
A
P9WFV1
UNP
16
1
expression tag
THR
298
5AGR
A
P9WFV1
UNP
17
1
expression tag
THR
299
5AGR
A
P9WFV1
UNP
18
1
expression tag
GLU
300
5AGR
A
P9WFV1
UNP
19
1
expression tag
ASN
301
5AGR
A
P9WFV1
UNP
20
1
expression tag
LEU
302
5AGR
A
P9WFV1
UNP
21
1
expression tag
TYR
303
5AGR
A
P9WFV1
UNP
22
1
expression tag
PHE
304
5AGR
A
P9WFV1
UNP
23
1
expression tag
GLN
305
5AGR
A
P9WFV1
UNP
24
1
expression tag
GLY
306
5AGR
A
P9WFV1
UNP
25
1
expression tag
ALA
307
5AGR
A
P9WFV1
UNP
26
1
expression tag
MET
308
5AGR
A
P9WFV1
UNP
27
2
6
6
2
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
331
A
ASP
50
A
THR
336
A
THR
55
A
ALA
314
A
ALA
33
A
ALA
320
A
ALA
39
A
ALA
439
A
ALA
158
A
ALA
442
A
ALA
161
A
TYR
347
A
TYR
66
A
LEU
350
A
LEU
69
A
PRO
422
A
PRO
141
A
ILE
427
A
ILE
146
A
VAL
408
A
VAL
127
A
ILE
415
A
ILE
134
A
ALA
314
A
ALA
33
A
ALA
320
A
ALA
39
A
GLY
509
A
GLY
228
A
ALA
511
A
ALA
230
A
ALA
439
A
ALA
158
A
ALA
442
A
ALA
161
A
TYR
347
A
TYR
66
A
LEU
350
A
LEU
69
A
PRO
422
A
PRO
141
A
ILE
427
A
ILE
146
A
VAL
408
A
VAL
127
A
ILE
415
A
ILE
134
A
ALA
314
A
ALA
33
A
ALA
320
A
ALA
39
A
ASP
331
A
ASP
50
A
THR
336
A
THR
55
A
GLY
509
A
GLY
228
A
ALA
511
A
ALA
230
A
ALA
314
A
ALA
33
A
ALA
320
A
ALA
39
A
ILE
465
A
ILE
184
A
ALA
466
A
ALA
185
A
ILE
480
A
ILE
199
A
LEU
481
A
LEU
200
BINDING SITE FOR RESIDUE A52 A 1514
A
A52
1514
Software
18
BINDING SITE FOR RESIDUE EDO A 1515
A
EDO
1515
Software
6
Binding site for Di-peptide MET A 1 and LEU A 2
Software
9
A
PHE
335
A
PHE
54
18
1_555
A
THR
336
A
THR
55
18
1_555
A
THR
337
A
THR
56
18
1_555
A
ARG
338
A
ARG
57
18
1_555
A
TYR
430
A
TYR
149
18
1_555
A
VAL
431
A
VAL
150
18
1_555
A
LEU
432
A
LEU
151
18
1_555
A
TYR
435
A
TYR
154
18
1_555
A
ILE
440
A
ILE
159
18
1_555
A
MET
441
A
MET
160
18
1_555
A
HIS
446
A
HIS
165
18
1_555
A
ASP
447
A
ASP
166
18
1_555
A
ARG
449
A
ARG
168
18
1_555
A
ASP
450
A
ASP
169
18
1_555
A
HOH
2015
F
HOH
18
1_555
A
HOH
2114
F
HOH
18
1_555
A
HOH
2137
F
HOH
18
1_555
A
HOH
2138
F
HOH
18
1_555
A
ASP
331
A
ASP
50
6
1_555
A
ILE
332
A
ILE
51
6
1_555
A
GLU
333
A
GLU
52
6
1_555
A
HIS
354
A
HIS
73
6
1_555
A
GLN
400
A
GLN
119
6
3_655
A
THR
437
A
THR
156
6
1_555
A
SER
319
A
SER
38
9
4_555
A
ILE
415
A
ILE
134
9
4_555
A
PRO
417
A
PRO
136
9
4_555
A
GLY
420
A
GLY
139
9
4_555
A
ARG
502
A
ARG
221
9
4_555
A
ALA
506
A
ALA
225
9
4_555
A
HOH
2006
F
HOH
9
4_555
A
HOH
2237
F
HOH
9
4_555
A
HOH
2238
F
HOH
9
4_555
19
P 21 21 21