0.023361
0.000000
0.000000
0.000000
0.011728
0.000000
0.000000
0.000000
0.015676
0.00000
0.00000
0.00000
Florio, P.
Foll, C.
Cianci, M.
Del Rio, D.
Zanotti, G.
Berni, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
42.806
85.267
63.793
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O S
78.133
DIMETHYL SULFOXIDE
non-polymer
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C20 H20 O9
404.367
Resveratrol-3-O-glucuronide
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
S
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
O
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
S
C
N
129
N
C
N
130
N
O
N
131
N
C
Y
132
N
C
Y
133
N
N
Y
134
N
C
Y
135
N
C
Y
136
N
N
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
S
C
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
N
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
S
N
227
N
C
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
Y
284
N
C
Y
285
N
C
Y
286
N
C
N
287
N
C
N
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
N
293
N
O
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
S
C
N
298
R
C
N
299
S
C
N
300
S
C
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
O
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
O
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
S
N
344
N
O
N
345
N
O
N
346
N
O
N
347
N
O
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
R
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
N
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
Y
130
N
sing
Y
131
N
doub
Y
132
N
doub
N
133
N
sing
Y
134
N
sing
N
135
N
sing
Y
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
Y
238
N
doub
Y
239
N
sing
Y
240
N
sing
N
241
N
sing
Y
242
N
doub
N
243
N
sing
Y
244
N
doub
N
245
N
sing
Y
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
Y
267
N
sing
Y
268
N
doub
Y
269
N
doub
N
270
N
sing
Y
271
N
sing
Y
272
N
doub
Y
273
N
sing
N
274
N
sing
N
275
E
doub
N
276
N
sing
Y
277
N
sing
Y
278
N
doub
Y
279
N
doub
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
Y
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
290
29769
10.1074/JBC.M115.690172
26468275
Transthyretin Binding Heterogeneity and Anti-Amyloidogenic Activity of Natural Polyphenols and Their Metabolites
2015
10.2210/pdb5aks/pdb
pdb_00005aks
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
KB MIRROR
PIXEL
2013-08-31
DECTRIS PILATUS 6M
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.967
1.0
P13 (MX1)
PETRA III, EMBL c/o DESY
0.967
SYNCHROTRON
PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
13777.360
TRANSTHYRETIN
UNP RESIDUES 21-147
2
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
404.367
Resveratrol-3-O-glucuronide
2
syn
non-polymer
78.133
DIMETHYL SULFOXIDE
1
syn
non-polymer
18.015
water
330
nat
water
ATTR, PREALBUMIN, TBPA
no
no
GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK
ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK
ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
PLASMID
PET11B
1
2.31
46.76
NONE
VAPOR DIFFUSION, HANGING DROP
7
CRYSTALS OF WT HUMAN TTR- LIGAND COMPLEXES WERE OBTAINED AT ROOM TEMPERATURE IN ABOUT ONE WEEK BY CO-CRYSTALLIZATION, USING THE HANGING-DROP VAPOR DIFFUSION METHOD. THE PROTEIN (5 MG/ML), IN 20 MM SODIUM PHOSPHATE, PH 7, WAS INCUBATED WITH A FOUR-FOLD MOLAR EXCESS OF LIGANDS SOLUBILIZED IN DMSO. DROPS WERE FORMED BY MIXING EQUAL VOLUMES OF THE SOLUTION CONTAINING LIGAND-TTR COMPLEXES AND OF THE RESERVOIR/PRECIPITANT SOLUTION (2.2 M AMMONIUM SULPHATE, 0.1 M KCL, 0.03 M SODIUM PHOSPHATE, PH 7.0).
diffrn_source
entity_src_gen
exptl_crystal_grow
pdbx_struct_special_symmetry
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Database references
Data collection
Source and taxonomy
Data collection
Derived calculations
Experimental preparation
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2015-10-21
1
1
2015-10-28
1
2
2016-01-13
1
3
2018-03-07
1
4
2019-05-15
1
5
2024-01-10
_diffrn_source.pdbx_synchrotron_site
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_host_org_scientific_name
_exptl_crystal_grow.method
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY OF NATURAL POLYPHENOLS AND THEIR METABOLITES: RESVERATROL-4'-O-GLUCURONIDE
TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY OF NATURAL POLYPHENOLS AND THEIR METABOLITES: GENISTEIN-7-O-GLUCURONIDE
TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY OF NATURAL POLYPHENOLS AND THEIR METABOLITES: RESVERATROL-3-O-SULFATE
TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY OF NATURAL POLYPHENOLS AND THEIR METABOLITES: DAIDZEIN-7-O-GLUCURONIDE
PDBE
Y
PDBE
2015-03-05
REL
REL
SO4
SULFATE ION
R3X
Resveratrol-3-O-glucuronide
DMS
DIMETHYL SULFOXIDE
HOH
water
1F41
PDB ENTRY 1F41
PDB
experimental model
SO4
1125
2
SO4
SO4
1125
A
R3X
1127
3
R3X
R3X
1127
A
SO4
1125
2
SO4
SO4
1125
B
R3X
1127
3
R3X
R3X
1127
B
DMS
1128
4
DMS
DMS
1128
B
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2131
5
HOH
HOH
2131
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2134
5
HOH
HOH
2134
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2136
5
HOH
HOH
2136
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2140
5
HOH
HOH
2140
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
HOH
2146
5
HOH
HOH
2146
A
HOH
2147
5
HOH
HOH
2147
A
HOH
2148
5
HOH
HOH
2148
A
HOH
2149
5
HOH
HOH
2149
A
HOH
2150
5
HOH
HOH
2150
A
HOH
2151
5
HOH
HOH
2151
A
HOH
2152
5
HOH
HOH
2152
A
HOH
2153
5
HOH
HOH
2153
A
HOH
2154
5
HOH
HOH
2154
A
HOH
2155
5
HOH
HOH
2155
A
HOH
2156
5
HOH
HOH
2156
A
HOH
2157
5
HOH
HOH
2157
A
HOH
2158
5
HOH
HOH
2158
A
HOH
2159
5
HOH
HOH
2159
A
HOH
2160
5
HOH
HOH
2160
A
HOH
2161
5
HOH
HOH
2161
A
HOH
2162
5
HOH
HOH
2162
A
HOH
2163
5
HOH
HOH
2163
A
HOH
2164
5
HOH
HOH
2164
A
HOH
2165
5
HOH
HOH
2165
A
HOH
2166
5
HOH
HOH
2166
A
HOH
2167
5
HOH
HOH
2167
A
HOH
2168
5
HOH
HOH
2168
A
HOH
2169
5
HOH
HOH
2169
A
HOH
2170
5
HOH
HOH
2170
A
HOH
2171
5
HOH
HOH
2171
A
HOH
2172
5
HOH
HOH
2172
A
HOH
2173
5
HOH
HOH
2173
A
HOH
2174
5
HOH
HOH
2174
A
HOH
2175
5
HOH
HOH
2175
A
HOH
2176
5
HOH
HOH
2176
A
HOH
2177
5
HOH
HOH
2177
A
HOH
2178
5
HOH
HOH
2178
A
HOH
2179
5
HOH
HOH
2179
A
HOH
2180
5
HOH
HOH
2180
A
HOH
2181
5
HOH
HOH
2181
A
HOH
2182
5
HOH
HOH
2182
A
HOH
2183
5
HOH
HOH
2183
A
HOH
2184
5
HOH
HOH
2184
A
HOH
2185
5
HOH
HOH
2185
A
HOH
2186
5
HOH
HOH
2186
A
HOH
2187
5
HOH
HOH
2187
A
HOH
2188
5
HOH
HOH
2188
A
HOH
2189
5
HOH
HOH
2189
A
HOH
2190
5
HOH
HOH
2190
A
HOH
2191
5
HOH
HOH
2191
A
HOH
2192
5
HOH
HOH
2192
A
HOH
2193
5
HOH
HOH
2193
A
HOH
2194
5
HOH
HOH
2194
A
HOH
2195
5
HOH
HOH
2195
A
HOH
2196
5
HOH
HOH
2196
A
HOH
2197
5
HOH
HOH
2197
A
HOH
2198
5
HOH
HOH
2198
A
HOH
2199
5
HOH
HOH
2199
A
HOH
2200
5
HOH
HOH
2200
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2002
5
HOH
HOH
2002
B
HOH
2003
5
HOH
HOH
2003
B
HOH
2004
5
HOH
HOH
2004
B
HOH
2005
5
HOH
HOH
2005
B
HOH
2006
5
HOH
HOH
2006
B
HOH
2007
5
HOH
HOH
2007
B
HOH
2008
5
HOH
HOH
2008
B
HOH
2009
5
HOH
HOH
2009
B
HOH
2010
5
HOH
HOH
2010
B
HOH
2011
5
HOH
HOH
2011
B
HOH
2012
5
HOH
HOH
2012
B
HOH
2013
5
HOH
HOH
2013
B
HOH
2014
5
HOH
HOH
2014
B
HOH
2015
5
HOH
HOH
2015
B
HOH
2016
5
HOH
HOH
2016
B
HOH
2017
5
HOH
HOH
2017
B
HOH
2018
5
HOH
HOH
2018
B
HOH
2019
5
HOH
HOH
2019
B
HOH
2020
5
HOH
HOH
2020
B
HOH
2021
5
HOH
HOH
2021
B
HOH
2022
5
HOH
HOH
2022
B
HOH
2023
5
HOH
HOH
2023
B
HOH
2024
5
HOH
HOH
2024
B
HOH
2025
5
HOH
HOH
2025
B
HOH
2026
5
HOH
HOH
2026
B
HOH
2027
5
HOH
HOH
2027
B
HOH
2028
5
HOH
HOH
2028
B
HOH
2029
5
HOH
HOH
2029
B
HOH
2030
5
HOH
HOH
2030
B
HOH
2031
5
HOH
HOH
2031
B
HOH
2032
5
HOH
HOH
2032
B
HOH
2033
5
HOH
HOH
2033
B
HOH
2034
5
HOH
HOH
2034
B
HOH
2035
5
HOH
HOH
2035
B
HOH
2036
5
HOH
HOH
2036
B
HOH
2037
5
HOH
HOH
2037
B
HOH
2038
5
HOH
HOH
2038
B
HOH
2039
5
HOH
HOH
2039
B
HOH
2040
5
HOH
HOH
2040
B
HOH
2041
5
HOH
HOH
2041
B
HOH
2042
5
HOH
HOH
2042
B
HOH
2043
5
HOH
HOH
2043
B
HOH
2044
5
HOH
HOH
2044
B
HOH
2045
5
HOH
HOH
2045
B
HOH
2046
5
HOH
HOH
2046
B
HOH
2047
5
HOH
HOH
2047
B
HOH
2048
5
HOH
HOH
2048
B
HOH
2049
5
HOH
HOH
2049
B
HOH
2050
5
HOH
HOH
2050
B
HOH
2051
5
HOH
HOH
2051
B
HOH
2052
5
HOH
HOH
2052
B
HOH
2053
5
HOH
HOH
2053
B
HOH
2054
5
HOH
HOH
2054
B
HOH
2055
5
HOH
HOH
2055
B
HOH
2056
5
HOH
HOH
2056
B
HOH
2057
5
HOH
HOH
2057
B
HOH
2058
5
HOH
HOH
2058
B
HOH
2059
5
HOH
HOH
2059
B
HOH
2060
5
HOH
HOH
2060
B
HOH
2061
5
HOH
HOH
2061
B
HOH
2062
5
HOH
HOH
2062
B
HOH
2063
5
HOH
HOH
2063
B
HOH
2064
5
HOH
HOH
2064
B
HOH
2065
5
HOH
HOH
2065
B
HOH
2066
5
HOH
HOH
2066
B
HOH
2067
5
HOH
HOH
2067
B
HOH
2068
5
HOH
HOH
2068
B
HOH
2069
5
HOH
HOH
2069
B
HOH
2070
5
HOH
HOH
2070
B
HOH
2071
5
HOH
HOH
2071
B
HOH
2072
5
HOH
HOH
2072
B
HOH
2073
5
HOH
HOH
2073
B
HOH
2074
5
HOH
HOH
2074
B
HOH
2075
5
HOH
HOH
2075
B
HOH
2076
5
HOH
HOH
2076
B
HOH
2077
5
HOH
HOH
2077
B
HOH
2078
5
HOH
HOH
2078
B
HOH
2079
5
HOH
HOH
2079
B
HOH
2080
5
HOH
HOH
2080
B
HOH
2081
5
HOH
HOH
2081
B
HOH
2082
5
HOH
HOH
2082
B
HOH
2083
5
HOH
HOH
2083
B
HOH
2084
5
HOH
HOH
2084
B
HOH
2085
5
HOH
HOH
2085
B
HOH
2086
5
HOH
HOH
2086
B
HOH
2087
5
HOH
HOH
2087
B
HOH
2088
5
HOH
HOH
2088
B
HOH
2089
5
HOH
HOH
2089
B
HOH
2090
5
HOH
HOH
2090
B
HOH
2091
5
HOH
HOH
2091
B
HOH
2092
5
HOH
HOH
2092
B
HOH
2093
5
HOH
HOH
2093
B
HOH
2094
5
HOH
HOH
2094
B
HOH
2095
5
HOH
HOH
2095
B
HOH
2096
5
HOH
HOH
2096
B
HOH
2097
5
HOH
HOH
2097
B
HOH
2098
5
HOH
HOH
2098
B
HOH
2099
5
HOH
HOH
2099
B
HOH
2100
5
HOH
HOH
2100
B
HOH
2101
5
HOH
HOH
2101
B
HOH
2102
5
HOH
HOH
2102
B
HOH
2103
5
HOH
HOH
2103
B
HOH
2104
5
HOH
HOH
2104
B
HOH
2105
5
HOH
HOH
2105
B
HOH
2106
5
HOH
HOH
2106
B
HOH
2107
5
HOH
HOH
2107
B
HOH
2108
5
HOH
HOH
2108
B
HOH
2109
5
HOH
HOH
2109
B
HOH
2110
5
HOH
HOH
2110
B
HOH
2111
5
HOH
HOH
2111
B
HOH
2112
5
HOH
HOH
2112
B
HOH
2113
5
HOH
HOH
2113
B
HOH
2114
5
HOH
HOH
2114
B
HOH
2115
5
HOH
HOH
2115
B
HOH
2116
5
HOH
HOH
2116
B
HOH
2117
5
HOH
HOH
2117
B
HOH
2118
5
HOH
HOH
2118
B
HOH
2119
5
HOH
HOH
2119
B
HOH
2120
5
HOH
HOH
2120
B
HOH
2121
5
HOH
HOH
2121
B
HOH
2122
5
HOH
HOH
2122
B
HOH
2123
5
HOH
HOH
2123
B
HOH
2124
5
HOH
HOH
2124
B
HOH
2125
5
HOH
HOH
2125
B
HOH
2126
5
HOH
HOH
2126
B
HOH
2127
5
HOH
HOH
2127
B
HOH
2128
5
HOH
HOH
2128
B
HOH
2129
5
HOH
HOH
2129
B
HOH
2130
5
HOH
HOH
2130
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
CYS
10
n
10
CYS
10
A
PRO
11
n
11
PRO
11
A
LEU
12
n
12
LEU
12
A
MET
13
n
13
MET
13
A
VAL
14
n
14
VAL
14
A
LYS
15
n
15
LYS
15
A
VAL
16
n
16
VAL
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ALA
19
n
19
ALA
19
A
VAL
20
n
20
VAL
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
SER
23
n
23
SER
23
A
PRO
24
n
24
PRO
24
A
ALA
25
n
25
ALA
25
A
ILE
26
n
26
ILE
26
A
ASN
27
n
27
ASN
27
A
VAL
28
n
28
VAL
28
A
ALA
29
n
29
ALA
29
A
VAL
30
n
30
VAL
30
A
HIS
31
n
31
HIS
31
A
VAL
32
n
32
VAL
32
A
PHE
33
n
33
PHE
33
A
ARG
34
n
34
ARG
34
A
LYS
35
n
35
LYS
35
A
ALA
36
n
36
ALA
36
A
ALA
37
n
37
ALA
37
A
ASP
38
n
38
ASP
38
A
ASP
39
n
39
ASP
39
A
THR
40
n
40
THR
40
A
TRP
41
n
41
TRP
41
A
GLU
42
n
42
GLU
42
A
PRO
43
n
43
PRO
43
A
PHE
44
n
44
PHE
44
A
ALA
45
n
45
ALA
45
A
SER
46
n
46
SER
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
THR
49
n
49
THR
49
A
SER
50
n
50
SER
50
A
GLU
51
n
51
GLU
51
A
SER
52
n
52
SER
52
A
GLY
53
n
53
GLY
53
A
GLU
54
n
54
GLU
54
A
LEU
55
n
55
LEU
55
A
HIS
56
n
56
HIS
56
A
GLY
57
n
57
GLY
57
A
LEU
58
n
58
LEU
58
A
THR
59
n
59
THR
59
A
THR
60
n
60
THR
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
PHE
64
n
64
PHE
64
A
VAL
65
n
65
VAL
65
A
GLU
66
n
66
GLU
66
A
GLY
67
n
67
GLY
67
A
ILE
68
n
68
ILE
68
A
TYR
69
n
69
TYR
69
A
LYS
70
n
70
LYS
70
A
VAL
71
n
71
VAL
71
A
GLU
72
n
72
GLU
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
THR
75
n
75
THR
75
A
LYS
76
n
76
LYS
76
A
SER
77
n
77
SER
77
A
TYR
78
n
78
TYR
78
A
TRP
79
n
79
TRP
79
A
LYS
80
n
80
LYS
80
A
ALA
81
n
81
ALA
81
A
LEU
82
n
82
LEU
82
A
GLY
83
n
83
GLY
83
A
ILE
84
n
84
ILE
84
A
SER
85
n
85
SER
85
A
PRO
86
n
86
PRO
86
A
PHE
87
n
87
PHE
87
A
HIS
88
n
88
HIS
88
A
GLU
89
n
89
GLU
89
A
HIS
90
n
90
HIS
90
A
ALA
91
n
91
ALA
91
A
GLU
92
n
92
GLU
92
A
VAL
93
n
93
VAL
93
A
VAL
94
n
94
VAL
94
A
PHE
95
n
95
PHE
95
A
THR
96
n
96
THR
96
A
ALA
97
n
97
ALA
97
A
ASN
98
n
98
ASN
98
A
ASP
99
n
99
ASP
99
A
SER
100
n
100
SER
100
A
GLY
101
n
101
GLY
101
A
PRO
102
n
102
PRO
102
A
ARG
103
n
103
ARG
103
A
ARG
104
n
104
ARG
104
A
TYR
105
n
105
TYR
105
A
THR
106
n
106
THR
106
A
ILE
107
n
107
ILE
107
A
ALA
108
n
108
ALA
108
A
ALA
109
n
109
ALA
109
A
LEU
110
n
110
LEU
110
A
LEU
111
n
111
LEU
111
A
SER
112
n
112
SER
112
A
PRO
113
n
113
PRO
113
A
TYR
114
n
114
TYR
114
A
SER
115
n
115
SER
115
A
TYR
116
n
116
TYR
116
A
SER
117
n
117
SER
117
A
THR
118
n
118
THR
118
A
THR
119
n
119
THR
119
A
ALA
120
n
120
ALA
120
A
VAL
121
n
121
VAL
121
A
VAL
122
n
122
VAL
122
A
THR
123
n
123
THR
123
A
ASN
124
n
124
ASN
124
A
PRO
125
n
125
PRO
125
A
n
126
126
A
n
127
127
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
CYS
10
n
10
CYS
10
B
PRO
11
n
11
PRO
11
B
LEU
12
n
12
LEU
12
B
MET
13
n
13
MET
13
B
VAL
14
n
14
VAL
14
B
LYS
15
n
15
LYS
15
B
VAL
16
n
16
VAL
16
B
LEU
17
n
17
LEU
17
B
ASP
18
n
18
ASP
18
B
ALA
19
n
19
ALA
19
B
VAL
20
n
20
VAL
20
B
ARG
21
n
21
ARG
21
B
GLY
22
n
22
GLY
22
B
SER
23
n
23
SER
23
B
PRO
24
n
24
PRO
24
B
ALA
25
n
25
ALA
25
B
ILE
26
n
26
ILE
26
B
ASN
27
n
27
ASN
27
B
VAL
28
n
28
VAL
28
B
ALA
29
n
29
ALA
29
B
VAL
30
n
30
VAL
30
B
HIS
31
n
31
HIS
31
B
VAL
32
n
32
VAL
32
B
PHE
33
n
33
PHE
33
B
ARG
34
n
34
ARG
34
B
LYS
35
n
35
LYS
35
B
ALA
36
n
36
ALA
36
B
ALA
37
n
37
ALA
37
B
ASP
38
n
38
ASP
38
B
ASP
39
n
39
ASP
39
B
THR
40
n
40
THR
40
B
TRP
41
n
41
TRP
41
B
GLU
42
n
42
GLU
42
B
PRO
43
n
43
PRO
43
B
PHE
44
n
44
PHE
44
B
ALA
45
n
45
ALA
45
B
SER
46
n
46
SER
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
THR
49
n
49
THR
49
B
SER
50
n
50
SER
50
B
GLU
51
n
51
GLU
51
B
SER
52
n
52
SER
52
B
GLY
53
n
53
GLY
53
B
GLU
54
n
54
GLU
54
B
LEU
55
n
55
LEU
55
B
HIS
56
n
56
HIS
56
B
GLY
57
n
57
GLY
57
B
LEU
58
n
58
LEU
58
B
THR
59
n
59
THR
59
B
THR
60
n
60
THR
60
B
GLU
61
n
61
GLU
61
B
GLU
62
n
62
GLU
62
B
GLU
63
n
63
GLU
63
B
PHE
64
n
64
PHE
64
B
VAL
65
n
65
VAL
65
B
GLU
66
n
66
GLU
66
B
GLY
67
n
67
GLY
67
B
ILE
68
n
68
ILE
68
B
TYR
69
n
69
TYR
69
B
LYS
70
n
70
LYS
70
B
VAL
71
n
71
VAL
71
B
GLU
72
n
72
GLU
72
B
ILE
73
n
73
ILE
73
B
ASP
74
n
74
ASP
74
B
THR
75
n
75
THR
75
B
LYS
76
n
76
LYS
76
B
SER
77
n
77
SER
77
B
TYR
78
n
78
TYR
78
B
TRP
79
n
79
TRP
79
B
LYS
80
n
80
LYS
80
B
ALA
81
n
81
ALA
81
B
LEU
82
n
82
LEU
82
B
GLY
83
n
83
GLY
83
B
ILE
84
n
84
ILE
84
B
SER
85
n
85
SER
85
B
PRO
86
n
86
PRO
86
B
PHE
87
n
87
PHE
87
B
HIS
88
n
88
HIS
88
B
GLU
89
n
89
GLU
89
B
HIS
90
n
90
HIS
90
B
ALA
91
n
91
ALA
91
B
GLU
92
n
92
GLU
92
B
VAL
93
n
93
VAL
93
B
VAL
94
n
94
VAL
94
B
PHE
95
n
95
PHE
95
B
THR
96
n
96
THR
96
B
ALA
97
n
97
ALA
97
B
ASN
98
n
98
ASN
98
B
ASP
99
n
99
ASP
99
B
SER
100
n
100
SER
100
B
GLY
101
n
101
GLY
101
B
PRO
102
n
102
PRO
102
B
ARG
103
n
103
ARG
103
B
ARG
104
n
104
ARG
104
B
TYR
105
n
105
TYR
105
B
THR
106
n
106
THR
106
B
ILE
107
n
107
ILE
107
B
ALA
108
n
108
ALA
108
B
ALA
109
n
109
ALA
109
B
LEU
110
n
110
LEU
110
B
LEU
111
n
111
LEU
111
B
SER
112
n
112
SER
112
B
PRO
113
n
113
PRO
113
B
TYR
114
n
114
TYR
114
B
SER
115
n
115
SER
115
B
TYR
116
n
116
TYR
116
B
SER
117
n
117
SER
117
B
THR
118
n
118
THR
118
B
THR
119
n
119
THR
119
B
ALA
120
n
120
ALA
120
B
VAL
121
n
121
VAL
121
B
VAL
122
n
122
VAL
122
B
THR
123
n
123
THR
123
B
ASN
124
n
124
ASN
124
B
n
125
125
B
n
126
126
B
n
127
127
B
author_and_software_defined_assembly
PISA
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
42.8060000000
85.2670000000
0.0000000000
A
O
SER
23
A
O
SER
23
A
N
ASP
18
A
N
ASP
18
A
N
LEU
55
A
N
LEU
55
A
O
VAL
14
A
O
VAL
14
B
O
SER
23
B
O
SER
23
B
N
ASP
18
B
N
ASP
18
B
N
LEU
55
B
N
LEU
55
B
O
VAL
14
B
O
VAL
14
A
N
GLY
47
A
N
GLY
47
A
O
VAL
30
A
O
VAL
30
A
N
LYS
35
A
N
LYS
35
A
O
ILE
68
A
O
ILE
68
A
N
ILE
73
A
N
ILE
73
A
O
ALA
91
A
O
ALA
91
A
O
VAL
94
A
O
VAL
94
B
N
GLU
89
B
N
GLU
89
B
N
ALA
97
B
N
ALA
97
B
O
GLY
67
B
O
GLY
67
B
N
GLU
72
B
N
GLU
72
B
O
HIS
31
B
O
HIS
31
B
N
ARG
34
B
N
ARG
34
B
O
GLU
42
B
O
GLU
42
1
A
R3X
1127
D
R3X
1
A
R3X
1127
D
R3X
1
A
R3X
1127
D
R3X
1
B
R3X
1127
F
R3X
1
B
R3X
1127
F
R3X
1
A
GLY
1
A
GLY
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
A
GLY
4
A
GLY
4
1
Y
1
A
THR
5
A
THR
5
1
Y
1
A
GLY
6
A
GLY
6
1
Y
1
A
GLU
7
A
GLU
7
1
Y
1
A
SER
8
A
SER
8
1
Y
1
A
LYS
9
A
LYS
9
1
Y
1
A
LYS
126
A
LYS
126
1
Y
1
A
GLU
127
A
GLU
127
1
Y
1
B
GLY
1
B
GLY
1
1
Y
1
B
PRO
2
B
PRO
2
1
Y
1
B
THR
3
B
THR
3
1
Y
1
B
GLY
4
B
GLY
4
1
Y
1
B
THR
5
B
THR
5
1
Y
1
B
GLY
6
B
GLY
6
1
Y
1
B
GLU
7
B
GLU
7
1
Y
1
B
SER
8
B
SER
8
1
Y
1
B
LYS
9
B
LYS
9
1
Y
1
B
PRO
125
B
PRO
125
1
Y
1
B
LYS
126
B
LYS
126
1
Y
1
B
GLU
127
B
GLU
127
1
Y
1
B
B
OD1
O
ASP
HOH
74
2082
1.60
A
1
A
A
OG1
O
THR
HOH
60
2091
1.65
1
A
A
OE2
O
GLU
HOH
66
2108
1.66
B
1
A
A
O
O
HOH
HOH
2029
2031
1.77
1
B
B
O
O
HOH
HOH
2101
2102
1.77
1
A
A
OH
O
TYR
HOH
116
2154
1.78
B
1
A
A
O
O
HOH
HOH
2184
2185
1.82
1
B
B
OG
O
SER
HOH
85
2104
1.85
1
A
B
O
O
HOH
HOH
2188
2123
1.86
1
A
A
O
O
HOH
HOH
2069
2070
1.86
1
A
A
OD1
O
ASP
HOH
99
2159
1.87
A
1
B
A
OH
O
TYR
HOH
116
2154
1.92
B
1
A
A
O
O
HOH
HOH
2096
2097
1.95
1
A
A
N
O
GLU
HOH
62
2091
1.97
1
B
B
ND1
O
HIS
HOH
90
2083
1.97
B
1
A
A
SG
O
CYS
HOH
10
2005
1.97
A
1
B
B
OE2
O
GLU
HOH
72
2078
1.98
1
A
A
O6A
O
R3X
HOH
1127
2198
1.98
1
A
A
OE2
O
GLU
HOH
92
2157
1.98
1
B
B
O
O
HOH
HOH
2074
2112
1.98
1
B
B
O
O
PRO
HOH
102
2116
1.99
B
1
A
A
O
O
GLY
HOH
83
2135
2.00
B
1
A
A
O2
O
SO4
HOH
1125
2157
2.00
1
A
A
O
O
HOH
HOH
2172
2173
2.00
1
A
A
O
O
HOH
HOH
2113
2156
2.01
1
B
B
O
O
HOH
HOH
2104
2106
2.01
1
B
A
O
O
DMS
HOH
1128
2176
2.03
1
A
A
O
O
HOH
HOH
2121
2123
2.04
1
A
A
O3
O
R3X
HOH
1127
2199
2.04
1
B
B
O
O
GLY
HOH
83
2097
2.04
1
A
A
O
O
HOH
HOH
2118
2150
2.04
1
B
B
O
O
HOH
HOH
2064
2072
2.04
1
B
B
OD1
O
ASN
HOH
124
2116
2.05
1
A
A
OD2
O
ASP
HOH
99
2169
2.06
A
1
B
B
O
O
HOH
HOH
2063
2065
2.06
1
A
A
O
O
HOH
HOH
2071
2072
2.06
1
B
B
O5
O
R3X
HOH
1127
2130
2.08
1
A
A
O
O
HOH
HOH
2174
2177
2.08
1
A
A
O
O
HOH
HOH
2157
2196
2.09
1
B
B
O
O
GLY
HOH
101
2114
2.09
B
1
B
A
O1
O
SO4
HOH
1125
2062
2.10
1
B
B
O
O
ASP
HOH
99
2114
2.10
B
1
A
A
OD1
O
ASP
HOH
38
2049
2.12
1
B
A
NH1
O
ARG
HOH
103
2182
2.13
B
1
A
A
O
O
HOH
HOH
2026
2076
2.13
1
A
A
N
O
ALA
HOH
36
2050
2.13
1
A
A
O
O
HOH
HOH
2020
2044
2.14
1
A
A
N
O
GLU
HOH
63
2091
2.14
1
B
B
O
O
HOH
HOH
2097
2099
2.15
1
B
B
NH1
O
ARG
HOH
103
2114
2.15
A
1
A
A
O
O
HOH
HOH
2176
2191
2.16
1
B
B
O
O
SER
HOH
117
2120
2.16
C
1
A
A
N
O
THR
HOH
40
2049
2.16
1
A
A
O
O
HOH
HOH
2062
2156
2.16
1
A
A
O
O
HOH
HOH
2147
2148
2.17
1
A
A
OG1
O
THR
HOH
119
2186
2.17
A
1
B
A
OE2
O
GLU
HOH
92
2156
2.17
B
1
B
B
O
O
HOH
HOH
2051
2066
2.18
1
B
B
O
O
HOH
HOH
2081
2090
2.18
1
A
B
O
O
HOH
HOH
2169
2088
2.18
1
B
B
O
O
HOH
HOH
2018
2061
2.18
1
A
A
O
O
HOH
HOH
2004
2005
2.19
1
A
A
SG
O
CYS
HOH
10
2005
2.19
B
1
A
A
O
O
GLY
HOH
83
2136
2.19
B
1
A
A
O
O
HOH
HOH
2062
2113
2.19
1
A
A
O
O
HOH
HOH
2023
2025
2.19
1
-7.95
1.20
123.30
115.35
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
66
66
66
A
A
A
N
1
A
A
O
O
HOH
HOH
2088
2108
1.72
1_555
4_556
1
A
B
O
O
HOH
HOH
2014
2105
1.93
1_555
2_665
1
B
B
O
O
HOH
HOH
2055
2070
1.97
1_555
4_457
1
A
A
O
O
HOH
HOH
2036
2105
1.97
1_555
4_556
1
B
B
OE2
O
GLU
HOH
62
2083
1.98
A
1_555
4_557
1
A
A
O
O
HOH
HOH
2034
2065
2.02
1_555
4_556
1
A
A
O
O
HOH
HOH
2040
2095
2.03
1_555
4_556
1
A
A
O2
O
R3X
HOH
1127
2197
2.05
1_555
2_665
1
A
A
O
O
HOH
HOH
2081
2197
2.06
1_555
2_665
1
A
A
O
O
HOH
HOH
2032
2104
2.14
1_555
4_556
1
A
A
O
O
HOH
HOH
2193
2200
2.16
1_555
2_665
1
A
B
O
O
GLY
HOH
83
2100
2.16
A
1_555
1_655
1
A
ASP
39
82.36
9.20
1
B
ASP
99
-71.15
-99.94
1
B
SER
100
B
52.34
77.21
0.1879
0.1666
0.1677
1.250
63.793
3120
61893
5.0
94.65
0.13
1
1.34
MOLECULAR REPLACEMENT
20.35
0.90
1.11
PDB ENTRY 1F41
ML
FLAT BULK SOLVENT MODEL
1.250
63.793
330
2187
72
0
1785
0.021
2308
2.044
3198
15.770
837
0.104
348
0.013
415
0.2779
0.2542
1.2695
106
2203
79.00
0.2647
0.2589
1.2904
120
2600
92.00
0.2488
0.2549
1.3126
132
2604
94.00
0.2547
0.2447
1.3365
125
2664
94.00
0.2699
0.2239
1.3622
155
2617
95.00
0.2414
0.2148
1.3900
147
2639
95.00
0.2419
0.2203
1.4202
137
2540
91.00
0.2743
0.2131
1.4533
127
2614
94.00
0.2451
0.2027
1.4896
141
2678
95.00
0.2109
0.1906
1.5299
159
2676
96.00
0.1983
0.1928
1.5749
134
2680
96.00
0.1958
0.1813
1.6257
153
2685
96.00
0.2036
0.1884
1.6838
144
2614
93.00
0.2389
0.1805
1.7513
139
2736
97.00
0.1991
0.1809
1.8310
141
2731
97.00
0.1896
0.1648
1.9275
153
2713
97.00
0.1837
0.1532
2.0483
154
2756
97.00
0.1685
0.1492
2.2065
148
2693
95.00
0.1714
0.1507
2.4285
154
2771
98.00
0.1759
0.1537
2.7799
141
2813
98.00
0.1789
0.1566
3.5024
150
2788
96.00
0.1638
0.1494
63.8762
160
2958
97.00
15.30
1.25
63.79
5AKS
61920
3.5
0.04
1
21.60
6.7
95.1
0.08
1.25
1.27
3.50
1
6.3
80.2
refinement
PHENIX
(PHENIX.REFINE)
data reduction
XDS
data scaling
Aimless
phasing
PHENIX
Transthyretin binding heterogeneity and anti-amyloidogenic activity of natural polyphenols and their metabolites: resveratrol-3-O- glucuronide
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
ASP
74
A
ASP
74
HELX_P
A
LEU
82
A
LEU
82
1
1
9
B
ASP
74
B
ASP
74
HELX_P
B
LEU
82
B
LEU
82
1
2
9
TRANSPORT PROTEIN
TRANSPORT PROTEIN, AMYLOID, FIBRILLOGENESIS, FIBRILLOGENESIS INHIBITORS, POLYPHENOLS, POLYPHENOL METABOLITES, TRANSTHYRETIN, NEGATIVE COOPERATIVITY
TTHY_HUMAN
UNP
1
P02766
21
147
5AKS
1
127
P02766
A
1
1
127
21
147
5AKS
1
127
P02766
B
1
1
127
2
2
2
2
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
23
A
SER
23
A
PRO
24
A
PRO
24
A
LEU
12
A
LEU
12
A
ASP
18
A
ASP
18
A
GLU
54
A
GLU
54
A
LEU
55
A
LEU
55
A
LEU
12
A
LEU
12
A
ASP
18
A
ASP
18
B
SER
23
B
SER
23
B
PRO
24
B
PRO
24
B
LEU
12
B
LEU
12
B
ASP
18
B
ASP
18
B
GLU
54
B
GLU
54
B
LEU
55
B
LEU
55
B
LEU
12
B
LEU
12
B
ASP
18
B
ASP
18
A
TRP
41
A
TRP
41
A
LYS
48
A
LYS
48
A
ALA
29
A
ALA
29
A
LYS
35
A
LYS
35
A
GLY
67
A
GLY
67
A
ILE
73
A
ILE
73
A
HIS
88
A
HIS
88
A
ALA
97
A
ALA
97
B
HIS
88
B
HIS
88
B
ALA
97
B
ALA
97
B
GLY
67
B
GLY
67
B
ILE
73
B
ILE
73
B
ALA
29
B
ALA
29
B
LYS
35
B
LYS
35
B
TRP
41
B
TRP
41
B
LYS
48
B
LYS
48
BINDING SITE FOR RESIDUE SO4 B 1125
B
SO4
1125
Software
9
BINDING SITE FOR RESIDUE SO4 A 1125
A
SO4
1125
Software
8
BINDING SITE FOR RESIDUE DMS B 1128
B
DMS
1128
Software
7
BINDING SITE FOR RESIDUE R3X A 1127
A
R3X
1127
Software
21
BINDING SITE FOR RESIDUE R3X B 1127
B
R3X
1127
Software
15
A
LYS
35
A
LYS
35
9
1_555
A
TRP
41
A
TRP
41
9
1_555
A
HOH
2062
H
HOH
9
1_555
A
HOH
2156
H
HOH
9
1_555
B
GLU
72
B
GLU
72
9
1_555
B
HIS
90
B
HIS
90
9
1_555
B
HOH
2078
I
HOH
9
1_555
B
HOH
2080
I
HOH
9
1_555
B
HOH
2129
I
HOH
9
1_555
A
LYS
70
A
LYS
70
8
1_555
A
GLU
72
A
GLU
72
8
1_555
A
HIS
90
A
HIS
90
8
1_555
A
GLU
92
A
GLU
92
8
1_555
A
HOH
2112
H
HOH
8
1_555
A
HOH
2153
H
HOH
8
1_555
A
HOH
2157
H
HOH
8
1_555
B
TRP
41
B
TRP
41
8
1_555
A
ARG
103
A
ARG
103
7
1_555
A
HOH
2015
H
HOH
7
2_665
A
HOH
2058
H
HOH
7
1_555
A
HOH
2175
H
HOH
7
1_555
A
HOH
2176
H
HOH
7
1_555
A
HOH
2177
H
HOH
7
1_555
B
TYR
114
B
TYR
114
7
1_555
A
LYS
15
A
LYS
15
21
2_665
A
LYS
15
A
LYS
15
21
1_555
A
THR
106
A
THR
106
21
2_665
A
SER
117
A
SER
117
21
1_555
A
SER
117
A
SER
117
21
2_665
A
THR
119
A
THR
119
21
1_555
A
THR
119
A
THR
119
21
2_665
A
VAL
121
A
VAL
121
21
2_665
A
HOH
2011
H
HOH
21
1_555
A
HOH
2081
H
HOH
21
1_555
A
HOH
2082
H
HOH
21
2_665
A
HOH
2083
H
HOH
21
2_665
A
HOH
2178
H
HOH
21
2_665
A
HOH
2186
H
HOH
21
2_665
A
HOH
2187
H
HOH
21
2_665
A
HOH
2187
H
HOH
21
1_555
A
HOH
2197
H
HOH
21
2_665
A
HOH
2197
H
HOH
21
1_555
A
HOH
2198
H
HOH
21
1_555
A
HOH
2199
H
HOH
21
1_555
A
HOH
2200
H
HOH
21
1_555
B
MET
13
B
MET
13
15
1_555
B
LYS
15
B
LYS
15
15
2_665
B
LEU
17
B
LEU
17
15
1_555
B
GLU
54
B
GLU
54
15
1_555
B
THR
106
B
THR
106
15
1_555
B
LEU
110
B
LEU
110
15
1_555
B
SER
117
B
SER
117
15
2_665
B
SER
117
B
SER
117
15
1_555
B
THR
119
B
THR
119
15
1_555
B
THR
119
B
THR
119
15
2_665
B
HOH
2005
I
HOH
15
2_665
B
HOH
2005
I
HOH
15
1_555
B
HOH
2120
I
HOH
15
1_555
B
HOH
2120
I
HOH
15
2_665
B
HOH
2130
I
HOH
15
1_555
18
P 21 21 2