0.025143
0.000000
0.000079
0.000000
0.021715
0.000000
0.000000
0.000000
0.023403
0.00000
0.00000
0.00000
Gallego, P.
Garcia-Pardo, J.
Lorenzo, J.
Aviles, F.X.
Ventura, S.
Reverter, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.18
90.00
39.773
46.051
42.730
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
The Structure of the Ttldomain of the Human Carboxypeptidase D
THR A 412 C-BETA WRONG HAND THR B 412 C-BETA WRONG HAND
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.979491
1.0
XALOC
ALBA
0.979491
SYNCHROTRON
ALBA BEAMLINE XALOC
8757.919
CARBOXYPEPTIDASE D
3.4.17.22
TRANSTHYRETIN-LIKE DOMAIN, UNP 383-461
2
man
polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
249
nat
water
METALLOCARBOXYPEPTIDASE D, GP180, METALLOCARBOXYPEPTIDASE D , GP180, HUMAN CARBOXYPEPTIDASE D, HUMAN CARBOXYPEPTIDASE D
no
no
SGVKGFVKDSITGSGLENATISVAGINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVVKEGPATEVDFSLRP
HH
SGVKGFVKDSITGSGLENATISVAGINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVVKEGPATEVDFSLRP
HH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
PET28
3
2.22
44.67
NONE
repository
Initial release
1
0
2016-09-28
PDBE
Y
PDBE
2015-09-18
REL
1
B
O
HOH
2120
6.19
GOL
GLYCEROL
HOH
water
GOL
1464
2
GOL
GOL
1464
B
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
HOH
2101
3
HOH
HOH
2101
A
HOH
2102
3
HOH
HOH
2102
A
HOH
2103
3
HOH
HOH
2103
A
HOH
2104
3
HOH
HOH
2104
A
HOH
2105
3
HOH
HOH
2105
A
HOH
2106
3
HOH
HOH
2106
A
HOH
2107
3
HOH
HOH
2107
A
HOH
2108
3
HOH
HOH
2108
A
HOH
2109
3
HOH
HOH
2109
A
HOH
2110
3
HOH
HOH
2110
A
HOH
2111
3
HOH
HOH
2111
A
HOH
2112
3
HOH
HOH
2112
A
HOH
2113
3
HOH
HOH
2113
A
HOH
2114
3
HOH
HOH
2114
A
HOH
2115
3
HOH
HOH
2115
A
HOH
2116
3
HOH
HOH
2116
A
HOH
2117
3
HOH
HOH
2117
A
HOH
2118
3
HOH
HOH
2118
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
HOH
2039
3
HOH
HOH
2039
B
HOH
2040
3
HOH
HOH
2040
B
HOH
2041
3
HOH
HOH
2041
B
HOH
2042
3
HOH
HOH
2042
B
HOH
2043
3
HOH
HOH
2043
B
HOH
2044
3
HOH
HOH
2044
B
HOH
2045
3
HOH
HOH
2045
B
HOH
2046
3
HOH
HOH
2046
B
HOH
2047
3
HOH
HOH
2047
B
HOH
2048
3
HOH
HOH
2048
B
HOH
2049
3
HOH
HOH
2049
B
HOH
2050
3
HOH
HOH
2050
B
HOH
2051
3
HOH
HOH
2051
B
HOH
2052
3
HOH
HOH
2052
B
HOH
2053
3
HOH
HOH
2053
B
HOH
2054
3
HOH
HOH
2054
B
HOH
2055
3
HOH
HOH
2055
B
HOH
2056
3
HOH
HOH
2056
B
HOH
2057
3
HOH
HOH
2057
B
HOH
2058
3
HOH
HOH
2058
B
HOH
2059
3
HOH
HOH
2059
B
HOH
2060
3
HOH
HOH
2060
B
HOH
2061
3
HOH
HOH
2061
B
HOH
2062
3
HOH
HOH
2062
B
HOH
2063
3
HOH
HOH
2063
B
HOH
2064
3
HOH
HOH
2064
B
HOH
2065
3
HOH
HOH
2065
B
HOH
2066
3
HOH
HOH
2066
B
HOH
2067
3
HOH
HOH
2067
B
HOH
2068
3
HOH
HOH
2068
B
HOH
2069
3
HOH
HOH
2069
B
HOH
2070
3
HOH
HOH
2070
B
HOH
2071
3
HOH
HOH
2071
B
HOH
2072
3
HOH
HOH
2072
B
HOH
2073
3
HOH
HOH
2073
B
HOH
2074
3
HOH
HOH
2074
B
HOH
2075
3
HOH
HOH
2075
B
HOH
2076
3
HOH
HOH
2076
B
HOH
2077
3
HOH
HOH
2077
B
HOH
2078
3
HOH
HOH
2078
B
HOH
2079
3
HOH
HOH
2079
B
HOH
2080
3
HOH
HOH
2080
B
HOH
2081
3
HOH
HOH
2081
B
HOH
2082
3
HOH
HOH
2082
B
HOH
2083
3
HOH
HOH
2083
B
HOH
2084
3
HOH
HOH
2084
B
HOH
2085
3
HOH
HOH
2085
B
HOH
2086
3
HOH
HOH
2086
B
HOH
2087
3
HOH
HOH
2087
B
HOH
2088
3
HOH
HOH
2088
B
HOH
2089
3
HOH
HOH
2089
B
HOH
2090
3
HOH
HOH
2090
B
HOH
2091
3
HOH
HOH
2091
B
HOH
2092
3
HOH
HOH
2092
B
HOH
2093
3
HOH
HOH
2093
B
HOH
2094
3
HOH
HOH
2094
B
HOH
2095
3
HOH
HOH
2095
B
HOH
2096
3
HOH
HOH
2096
B
HOH
2097
3
HOH
HOH
2097
B
HOH
2098
3
HOH
HOH
2098
B
HOH
2099
3
HOH
HOH
2099
B
HOH
2100
3
HOH
HOH
2100
B
HOH
2101
3
HOH
HOH
2101
B
HOH
2102
3
HOH
HOH
2102
B
HOH
2103
3
HOH
HOH
2103
B
HOH
2104
3
HOH
HOH
2104
B
HOH
2105
3
HOH
HOH
2105
B
HOH
2106
3
HOH
HOH
2106
B
HOH
2107
3
HOH
HOH
2107
B
HOH
2108
3
HOH
HOH
2108
B
HOH
2109
3
HOH
HOH
2109
B
HOH
2110
3
HOH
HOH
2110
B
HOH
2111
3
HOH
HOH
2111
B
HOH
2112
3
HOH
HOH
2112
B
HOH
2113
3
HOH
HOH
2113
B
HOH
2114
3
HOH
HOH
2114
B
HOH
2115
3
HOH
HOH
2115
B
HOH
2116
3
HOH
HOH
2116
B
HOH
2117
3
HOH
HOH
2117
B
HOH
2118
3
HOH
HOH
2118
B
HOH
2119
3
HOH
HOH
2119
B
HOH
2120
3
HOH
HOH
2120
B
HOH
2121
3
HOH
HOH
2121
B
HOH
2122
3
HOH
HOH
2122
B
HOH
2123
3
HOH
HOH
2123
B
HOH
2124
3
HOH
HOH
2124
B
HOH
2125
3
HOH
HOH
2125
B
HOH
2126
3
HOH
HOH
2126
B
HOH
2127
3
HOH
HOH
2127
B
HOH
2128
3
HOH
HOH
2128
B
HOH
2129
3
HOH
HOH
2129
B
HOH
2130
3
HOH
HOH
2130
B
HOH
2131
3
HOH
HOH
2131
B
SER
382
n
1
SER
382
A
GLY
383
n
2
GLY
383
A
VAL
384
n
3
VAL
384
A
LYS
385
n
4
LYS
385
A
GLY
386
n
5
GLY
386
A
PHE
387
n
6
PHE
387
A
VAL
388
n
7
VAL
388
A
LYS
389
n
8
LYS
389
A
ASP
390
n
9
ASP
390
A
SER
391
n
10
SER
391
A
ILE
392
n
11
ILE
392
A
THR
393
n
12
THR
393
A
GLY
394
n
13
GLY
394
A
SER
395
n
14
SER
395
A
GLY
396
n
15
GLY
396
A
LEU
397
n
16
LEU
397
A
GLU
398
n
17
GLU
398
A
ASN
399
n
18
ASN
399
A
ALA
400
n
19
ALA
400
A
THR
401
n
20
THR
401
A
ILE
402
n
21
ILE
402
A
SER
403
n
22
SER
403
A
VAL
404
n
23
VAL
404
A
ALA
405
n
24
ALA
405
A
GLY
406
n
25
GLY
406
A
ILE
407
n
26
ILE
407
A
ASN
408
n
27
ASN
408
A
HIS
409
n
28
HIS
409
A
ASN
410
n
29
ASN
410
A
ILE
411
n
30
ILE
411
A
THR
412
n
31
THR
412
A
THR
413
n
32
THR
413
A
GLY
414
n
33
GLY
414
A
ARG
415
n
34
ARG
415
A
PHE
416
n
35
PHE
416
A
GLY
417
n
36
GLY
417
A
ASP
418
n
37
ASP
418
A
PHE
419
n
38
PHE
419
A
TYR
420
n
39
TYR
420
A
ARG
421
n
40
ARG
421
A
LEU
422
n
41
LEU
422
A
LEU
423
n
42
LEU
423
A
VAL
424
n
43
VAL
424
A
PRO
425
n
44
PRO
425
A
GLY
426
n
45
GLY
426
A
THR
427
n
46
THR
427
A
TYR
428
n
47
TYR
428
A
ASN
429
n
48
ASN
429
A
LEU
430
n
49
LEU
430
A
THR
431
n
50
THR
431
A
VAL
432
n
51
VAL
432
A
VAL
433
n
52
VAL
433
A
LEU
434
n
53
LEU
434
A
THR
435
n
54
THR
435
A
GLY
436
n
55
GLY
436
A
TYR
437
n
56
TYR
437
A
MET
438
n
57
MET
438
A
PRO
439
n
58
PRO
439
A
LEU
440
n
59
LEU
440
A
THR
441
n
60
THR
441
A
VAL
442
n
61
VAL
442
A
THR
443
n
62
THR
443
A
ASN
444
n
63
ASN
444
A
VAL
445
n
64
VAL
445
A
VAL
446
n
65
VAL
446
A
VAL
447
n
66
VAL
447
A
LYS
448
n
67
LYS
448
A
GLU
449
n
68
GLU
449
A
GLY
450
n
69
GLY
450
A
PRO
451
n
70
PRO
451
A
ALA
452
n
71
ALA
452
A
THR
453
n
72
THR
453
A
GLU
454
n
73
GLU
454
A
VAL
455
n
74
VAL
455
A
ASP
456
n
75
ASP
456
A
PHE
457
n
76
PHE
457
A
SER
458
n
77
SER
458
A
LEU
459
n
78
LEU
459
A
ARG
460
n
79
ARG
460
A
PRO
461
n
80
PRO
461
A
HIS
462
n
81
HIS
462
A
n
82
463
A
SER
382
n
1
SER
382
B
GLY
383
n
2
GLY
383
B
VAL
384
n
3
VAL
384
B
LYS
385
n
4
LYS
385
B
GLY
386
n
5
GLY
386
B
PHE
387
n
6
PHE
387
B
VAL
388
n
7
VAL
388
B
LYS
389
n
8
LYS
389
B
ASP
390
n
9
ASP
390
B
SER
391
n
10
SER
391
B
ILE
392
n
11
ILE
392
B
THR
393
n
12
THR
393
B
GLY
394
n
13
GLY
394
B
SER
395
n
14
SER
395
B
GLY
396
n
15
GLY
396
B
LEU
397
n
16
LEU
397
B
GLU
398
n
17
GLU
398
B
ASN
399
n
18
ASN
399
B
ALA
400
n
19
ALA
400
B
THR
401
n
20
THR
401
B
ILE
402
n
21
ILE
402
B
SER
403
n
22
SER
403
B
VAL
404
n
23
VAL
404
B
ALA
405
n
24
ALA
405
B
GLY
406
n
25
GLY
406
B
ILE
407
n
26
ILE
407
B
ASN
408
n
27
ASN
408
B
HIS
409
n
28
HIS
409
B
ASN
410
n
29
ASN
410
B
ILE
411
n
30
ILE
411
B
THR
412
n
31
THR
412
B
THR
413
n
32
THR
413
B
GLY
414
n
33
GLY
414
B
ARG
415
n
34
ARG
415
B
PHE
416
n
35
PHE
416
B
GLY
417
n
36
GLY
417
B
ASP
418
n
37
ASP
418
B
PHE
419
n
38
PHE
419
B
TYR
420
n
39
TYR
420
B
ARG
421
n
40
ARG
421
B
LEU
422
n
41
LEU
422
B
LEU
423
n
42
LEU
423
B
VAL
424
n
43
VAL
424
B
PRO
425
n
44
PRO
425
B
GLY
426
n
45
GLY
426
B
THR
427
n
46
THR
427
B
TYR
428
n
47
TYR
428
B
ASN
429
n
48
ASN
429
B
LEU
430
n
49
LEU
430
B
THR
431
n
50
THR
431
B
VAL
432
n
51
VAL
432
B
VAL
433
n
52
VAL
433
B
LEU
434
n
53
LEU
434
B
THR
435
n
54
THR
435
B
GLY
436
n
55
GLY
436
B
TYR
437
n
56
TYR
437
B
MET
438
n
57
MET
438
B
PRO
439
n
58
PRO
439
B
LEU
440
n
59
LEU
440
B
THR
441
n
60
THR
441
B
VAL
442
n
61
VAL
442
B
THR
443
n
62
THR
443
B
ASN
444
n
63
ASN
444
B
VAL
445
n
64
VAL
445
B
VAL
446
n
65
VAL
446
B
VAL
447
n
66
VAL
447
B
LYS
448
n
67
LYS
448
B
GLU
449
n
68
GLU
449
B
GLY
450
n
69
GLY
450
B
PRO
451
n
70
PRO
451
B
ALA
452
n
71
ALA
452
B
THR
453
n
72
THR
453
B
GLU
454
n
73
GLU
454
B
VAL
455
n
74
VAL
455
B
ASP
456
n
75
ASP
456
B
PHE
457
n
76
PHE
457
B
SER
458
n
77
SER
458
B
LEU
459
n
78
LEU
459
B
ARG
460
n
79
ARG
460
B
PRO
461
n
80
PRO
461
B
HIS
462
n
81
HIS
462
B
HIS
463
n
82
HIS
463
B
0.4146
-0.0391
-0.2205
0.3836
0.3387
0.5276
-0.0195
-0.0035
-0.0154
0.0096
-0.0218
0.0316
0.0345
-0.0042
0.0413
0.0190
0.0018
-0.0014
0.0045
0.0028
0.0133
refined
-4.4650
0.9434
5.4132
X-RAY DIFFRACTION
0.7831
0.2078
-0.5010
0.5318
-0.0701
0.4187
-0.0034
-0.0408
-0.0011
0.0014
0.0236
-0.0537
-0.0024
0.0372
-0.0202
0.0059
-0.0052
-0.0018
0.0178
-0.0068
0.0111
refined
11.0776
0.5729
22.3022
X-RAY DIFFRACTION
A
383
A
461
X-RAY DIFFRACTION
1
B
383
B
461
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
1020
-8.0
9010
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
421
A
N
ARG
40
A
O
VAL
384
A
O
VAL
3
A
N
THR
453
A
N
THR
72
A
O
GLY
383
A
O
GLY
2
A
N
PHE
457
A
N
PHE
76
A
O
PHE
387
A
O
PHE
6
A
N
ILE
411
A
N
ILE
30
A
O
ILE
402
A
O
ILE
21
A
N
SER
403
A
N
SER
22
A
O
THR
431
A
O
THR
50
A
N
VAL
432
A
N
VAL
51
A
O
LEU
440
A
O
LEU
59
B
N
ARG
421
B
N
ARG
40
B
O
VAL
384
B
O
VAL
3
B
N
THR
453
B
N
THR
72
B
O
GLY
383
B
O
GLY
2
B
N
PHE
457
B
N
PHE
76
B
O
PHE
387
B
O
PHE
6
B
N
ILE
411
B
N
ILE
30
B
O
ILE
402
B
O
ILE
21
B
N
SER
403
B
N
SER
22
B
O
THR
431
B
O
THR
50
B
N
VAL
432
B
N
VAL
51
B
O
LEU
440
B
O
LEU
59
1
A
HIS
463
A
HIS
82
1
Y
1
A
CB
THR
412
WRONG HAND
1
B
CB
THR
412
WRONG HAND
1
B
B
CE
O
LYS
HOH
448
2109
1.90
B
1
B
B
NZ
O
LYS
HOH
448
2109
2.12
B
1
A
A
NE2
O
HIS
HOH
462
2072
2.19
A
1
-3.06
0.50
120.30
117.24
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
415
415
415
N
1
9.57
0.90
118.30
127.87
A
A
A
CB
CG
OD1
ASP
ASP
ASP
418
418
418
N
1
-3.77
0.50
120.30
116.53
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
421
421
421
A
A
A
N
1
4.83
0.60
121.00
125.83
B
B
B
CB
CG
CD1
TYR
TYR
TYR
420
420
420
N
1
-3.01
0.50
120.30
117.29
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
421
421
421
N
1
13.81
2.20
117.20
131.01
B
B
B
CA
C
N
THR
THR
ASN
443
443
444
B
Y
1
9.99
1.60
122.70
132.69
B
B
B
O
C
N
THR
THR
ASN
443
443
444
A
Y
1
-14.89
1.60
122.70
107.81
B
B
B
O
C
N
THR
THR
ASN
443
443
444
B
Y
1
3.21
0.50
120.30
123.51
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
460
460
460
N
1
-3.46
0.50
120.30
116.84
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
460
460
460
N
1
A
A
CB
CG
ASP
ASP
418
418
-0.158
0.021
1.513
1.355
N
1
A
A
CG
CD
GLU
GLU
449
449
0.101
0.015
1.515
1.616
N
1
B
B
CA
C
VAL
VAL
447
447
0.183
0.026
1.525
1.708
N
1
B
B
C
O
VAL
VAL
447
447
-0.157
0.019
1.229
1.072
N
1
B
B
C
O
LYS
LYS
448
448
0.178
0.019
1.229
1.407
B
B
N
1
A
HIS
409
81.07
97.79
1
B
HIS
409
-162.93
106.40
1
B
ASN
444
B
79.06
36.68
13.807
0.07
0.00
0.51
-0.14
0.00
0.07
0.974
0.968
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.17514
0.15282
0.15392
0.95
42.73
4610
88253
5.0
95.47
0.627
0.016
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.022
0.023
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
0.95
42.73
249
1479
6
0
1224
0.029
0.022
1365
2.364
1.961
1871
6.376
5.000
183
33.183
23.200
50
13.376
15.000
214
20.856
15.000
7
0.419
0.200
222
0.015
0.021
1035
2.198
1.500
871
3.216
2.000
1436
4.860
3.000
494
6.930
4.500
435
2.599
3.000
1365
0.324
0.313
0.974
236
4862
20
71.36
0.95
42.73
5AQ0
92883
2.0
0.03
1
13.70
2.5
95.5
0.46
0.95
1.00
1.70
1
2.0
81.3
refinement
REFMAC
5.5.0109
data reduction
XDS
data scaling
CCP4I
phasing
MOLREP
CARBOXYPEPTIDASE D (E.C.3.4.17.22)
The structure of the Transthyretin-like domain of the first catalytic domain of the HUMAN Carboxypeptidase D
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
HYDROLASE
HYDROLASE, MAN CARBOXYPEPTIDASE D, TTL, TRANSTHYRETIN-LIKE DOMAIN
CBPD_HUMAN
UNP
1
O75976
383
461
5AQ0
383
461
O75976
A
1
2
80
383
461
5AQ0
383
461
O75976
B
1
2
80
1
expression tag
SER
382
5AQ0
A
O75976
UNP
1
1
expression tag
HIS
462
5AQ0
A
O75976
UNP
81
1
expression tag
HIS
463
5AQ0
A
O75976
UNP
82
2
expression tag
SER
382
5AQ0
B
O75976
UNP
1
2
expression tag
HIS
462
5AQ0
B
O75976
UNP
81
2
expression tag
HIS
463
5AQ0
B
O75976
UNP
82
2
2
2
4
2
2
2
4
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
418
A
ASP
37
A
LEU
422
A
LEU
41
A
GLY
383
A
GLY
2
A
ASP
390
A
ASP
9
A
THR
453
A
THR
72
A
GLU
454
A
GLU
73
A
GLY
383
A
GLY
2
A
ASP
390
A
ASP
9
A
PHE
457
A
PHE
76
A
LEU
459
A
LEU
78
A
GLY
383
A
GLY
2
A
ASP
390
A
ASP
9
A
ILE
411
A
ILE
30
A
THR
412
A
THR
31
A
THR
401
A
THR
20
A
VAL
404
A
VAL
23
A
GLY
426
A
GLY
45
A
VAL
433
A
VAL
52
A
LEU
440
A
LEU
59
A
VAL
447
A
VAL
66
B
ASP
418
B
ASP
37
B
LEU
422
B
LEU
41
B
GLY
383
B
GLY
2
B
ASP
390
B
ASP
9
B
THR
453
B
THR
72
B
GLU
454
B
GLU
73
B
GLY
383
B
GLY
2
B
ASP
390
B
ASP
9
B
PHE
457
B
PHE
76
B
LEU
459
B
LEU
78
B
GLY
383
B
GLY
2
B
ASP
390
B
ASP
9
B
ILE
407
B
ILE
26
B
THR
412
B
THR
31
B
THR
401
B
THR
20
B
VAL
404
B
VAL
23
B
GLY
426
B
GLY
45
B
VAL
433
B
VAL
52
B
LEU
440
B
LEU
59
B
VAL
447
B
VAL
66
BINDING SITE FOR RESIDUE GOL B 1464
Software
10
A
PHE
419
A
PHE
38
10
1_555
A
HOH
2009
D
HOH
10
1_555
A
HOH
2010
D
HOH
10
1_555
A
HOH
2051
D
HOH
10
1_555
A
HOH
2053
D
HOH
10
1_555
B
LEU
434
B
LEU
53
10
1_555
B
GLY
436
B
GLY
55
10
1_555
B
TYR
437
B
TYR
56
10
1_555
B
GLU
449
B
GLU
68
10
1_455
B
HIS
462
B
HIS
81
10
1_555
4
P 1 21 1