0.016000
0.009238
0.000000
0.000000
0.018475
0.000000
0.000000
0.000000
0.008929
0.00000
0.00000
0.00000
Royant, A.
Nango, E.
Nakane, T.
Tanaka, T.
Arima, T.
Neutze, R.
Iwata, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
62.500
62.500
112.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C14 H30
198.388
TETRADECANE
non-polymer
C10 H22
142.282
DECANE
non-polymer
C9 H20
128.255
nonane
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C7 H16
100.202
HEPTANE
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C43 H88 O3
653.157
2,3-DI-PHYTANYL-GLYCEROL
1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C15 H32
212.415
PENTADECANE
non-polymer
C8 H18
114.229
N-OCTANE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C20 H28 O
284.436
RETINAL
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C13 H28
184.361
TRIDECANE
LIPID FRAGMENT
non-polymer
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C11 H24
156.308
UNDECANE
LIPID FRAGMENT
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
C
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
C
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
N
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
O
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
S
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
C
N
277
N
O
N
278
R
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
R
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
C
N
289
R
C
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
C
N
294
R
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
C
N
303
N
C
N
304
R
C
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
R
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
C
N
314
R
C
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
C
N
416
N
C
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
N
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
N
462
N
C
N
463
N
S
N
464
N
C
N
465
N
O
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
C
N
478
N
C
N
479
N
C
N
480
N
C
N
481
N
C
N
482
N
C
N
483
N
C
N
484
N
C
N
485
N
C
N
486
N
C
N
487
N
C
N
488
N
C
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
C
N
525
N
C
N
526
N
C
N
527
N
C
N
528
N
C
N
529
N
C
N
530
N
C
N
531
N
C
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
N
N
551
S
C
N
552
N
C
N
553
N
O
N
554
N
C
Y
555
N
C
Y
556
N
C
Y
557
N
C
Y
558
N
C
Y
559
N
C
Y
560
N
C
N
561
N
O
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
N
N
574
S
C
N
575
N
C
N
576
N
O
N
577
N
C
N
578
N
C
N
579
N
C
N
580
N
O
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
C
N
591
N
C
N
592
N
C
N
593
N
C
N
594
N
C
N
595
N
C
N
596
N
C
N
597
N
C
N
598
N
C
N
599
N
C
N
600
N
C
N
601
N
C
N
602
N
C
N
603
N
C
N
604
N
C
N
605
N
O
N
606
N
C
N
607
N
C
N
608
N
C
N
609
N
C
N
610
N
C
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
H
N
615
N
H
N
616
N
H
N
617
N
H
N
618
N
H
N
619
N
H
N
620
N
H
N
621
N
H
N
622
N
H
N
623
N
H
N
624
N
H
N
625
N
H
N
626
N
H
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
H
N
639
N
N
N
640
S
C
N
641
N
C
N
642
N
O
N
643
N
C
N
644
N
O
N
645
N
O
N
646
N
H
N
647
N
H
N
648
N
H
N
649
N
H
N
650
N
H
N
651
N
H
N
652
N
H
N
653
N
N
N
654
S
C
N
655
N
C
N
656
N
O
N
657
R
C
N
658
N
O
N
659
N
C
N
660
N
O
N
661
N
H
N
662
N
H
N
663
N
H
N
664
N
H
N
665
N
H
N
666
N
H
N
667
N
H
N
668
N
H
N
669
N
H
N
670
N
C
N
671
N
C
N
672
N
C
N
673
N
C
N
674
N
C
N
675
N
C
N
676
N
C
N
677
N
C
N
678
N
C
N
679
N
C
N
680
N
C
N
681
N
C
N
682
N
C
N
683
N
H
N
684
N
H
N
685
N
H
N
686
N
H
N
687
N
H
N
688
N
H
N
689
N
H
N
690
N
H
N
691
N
H
N
692
N
H
N
693
N
H
N
694
N
H
N
695
N
H
N
696
N
H
N
697
N
H
N
698
N
H
N
699
N
H
N
700
N
H
N
701
N
H
N
702
N
H
N
703
N
H
N
704
N
H
N
705
N
H
N
706
N
H
N
707
N
H
N
708
N
H
N
709
N
H
N
710
N
H
N
711
N
N
N
712
S
C
N
713
N
C
N
714
N
O
N
715
N
C
Y
716
N
C
Y
717
N
C
Y
718
N
C
Y
719
N
N
Y
720
N
C
Y
721
N
C
Y
722
N
C
Y
723
N
C
Y
724
N
C
N
725
N
O
N
726
N
H
N
727
N
H
N
728
N
H
N
729
N
H
N
730
N
H
N
731
N
H
N
732
N
H
N
733
N
H
N
734
N
H
N
735
N
H
N
736
N
H
N
737
N
H
N
738
N
N
N
739
S
C
N
740
N
C
N
741
N
O
N
742
N
C
Y
743
N
C
Y
744
N
C
Y
745
N
C
Y
746
N
C
Y
747
N
C
Y
748
N
C
N
749
N
O
N
750
N
O
N
751
N
H
N
752
N
H
N
753
N
H
N
754
N
H
N
755
N
H
N
756
N
H
N
757
N
H
N
758
N
H
N
759
N
H
N
760
N
H
N
761
N
H
N
762
N
C
N
763
N
C
N
764
N
C
N
765
N
C
N
766
N
C
N
767
N
C
N
768
N
C
N
769
N
C
N
770
N
C
N
771
N
C
N
772
N
C
N
773
N
H
N
774
N
H
N
775
N
H
N
776
N
H
N
777
N
H
N
778
N
H
N
779
N
H
N
780
N
H
N
781
N
H
N
782
N
H
N
783
N
H
N
784
N
H
N
785
N
H
N
786
N
H
N
787
N
H
N
788
N
H
N
789
N
H
N
790
N
H
N
791
N
H
N
792
N
H
N
793
N
H
N
794
N
H
N
795
N
H
N
796
N
H
N
797
N
N
N
798
S
C
N
799
N
C
N
800
N
O
N
801
N
C
N
802
N
C
N
803
N
C
N
804
N
O
N
805
N
H
N
806
N
H
N
807
N
H
N
808
N
H
N
809
N
H
N
810
N
H
N
811
N
H
N
812
N
H
N
813
N
H
N
814
N
H
N
815
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
doub
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
Y
542
N
doub
Y
543
N
sing
Y
544
N
sing
N
545
N
sing
Y
546
N
doub
N
547
N
sing
Y
548
N
doub
N
549
N
sing
Y
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
doub
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
doub
N
585
N
sing
N
586
N
sing
N
587
E
doub
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
E
doub
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
E
doub
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
E
doub
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
doub
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
N
622
N
sing
N
623
N
sing
N
624
N
sing
N
625
N
sing
N
626
N
doub
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
sing
N
633
N
sing
N
634
N
sing
N
635
N
sing
N
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
doub
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
N
645
N
sing
N
646
N
sing
N
647
N
sing
N
648
N
sing
N
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
sing
N
657
N
sing
N
658
N
sing
N
659
N
sing
N
660
N
sing
N
661
N
sing
N
662
N
sing
N
663
N
sing
N
664
N
sing
N
665
N
sing
N
666
N
sing
N
667
N
sing
N
668
N
sing
N
669
N
sing
N
670
N
sing
N
671
N
sing
N
672
N
sing
N
673
N
sing
N
674
N
sing
N
675
N
sing
N
676
N
sing
N
677
N
sing
N
678
N
sing
N
679
N
sing
N
680
N
sing
N
681
N
sing
N
682
N
sing
N
683
N
sing
N
684
N
sing
N
685
N
sing
N
686
N
sing
N
687
N
sing
N
688
N
sing
N
689
N
sing
N
690
N
sing
N
691
N
sing
N
692
N
sing
N
693
N
sing
N
694
N
sing
N
695
N
doub
N
696
N
sing
N
697
N
sing
N
698
N
sing
N
699
N
sing
Y
700
N
doub
Y
701
N
sing
Y
702
N
sing
N
703
N
sing
Y
704
N
doub
Y
705
N
sing
Y
706
N
sing
N
707
N
sing
Y
708
N
sing
Y
709
N
doub
N
710
N
sing
Y
711
N
doub
N
712
N
sing
Y
713
N
sing
N
714
N
sing
N
715
N
sing
N
716
N
sing
N
717
N
sing
N
718
N
sing
N
719
N
sing
N
720
N
sing
N
721
N
sing
N
722
N
sing
N
723
N
doub
N
724
N
sing
N
725
N
sing
N
726
N
sing
N
727
N
sing
Y
728
N
doub
Y
729
N
sing
Y
730
N
sing
N
731
N
sing
Y
732
N
doub
N
733
N
sing
Y
734
N
doub
N
735
N
sing
Y
736
N
sing
N
737
N
sing
N
738
N
sing
N
739
N
sing
N
740
N
sing
N
741
N
sing
N
742
N
sing
N
743
N
sing
N
744
N
sing
N
745
N
sing
N
746
N
sing
N
747
N
sing
N
748
N
sing
N
749
N
sing
N
750
N
sing
N
751
N
sing
N
752
N
sing
N
753
N
sing
N
754
N
sing
N
755
N
sing
N
756
N
sing
N
757
N
sing
N
758
N
sing
N
759
N
sing
N
760
N
sing
N
761
N
sing
N
762
N
sing
N
763
N
sing
N
764
N
sing
N
765
N
sing
N
766
N
sing
N
767
N
sing
N
768
N
sing
N
769
N
sing
N
770
N
sing
N
771
N
sing
N
772
N
sing
N
773
N
sing
N
774
N
sing
N
775
N
sing
N
776
N
sing
N
777
N
sing
N
778
N
sing
N
779
N
sing
N
780
N
sing
N
781
N
doub
N
782
N
sing
N
783
N
sing
N
784
N
sing
N
785
N
sing
N
786
N
sing
N
787
N
sing
N
788
N
sing
N
789
N
sing
N
790
N
sing
N
791
N
sing
N
792
N
sing
US
Science
SCIEAS
0038
1095-9203
354
1552
1557
10.1126/science.aah3497
28008064
A three-dimensional movie of structural changes in bacteriorhodopsin
2016
10.2210/pdb5b6x/pdb
pdb_00005b6x
293
1
CCD
2016-02-04
MPCCD
SINGLE WAVELENGTH
M
x-ray
1
1.63
1.0
BL3
SACLA
1.63
FREE ELECTRON LASER
SACLA BEAMLINE BL3
26814.412
Bacteriorhodopsin
UNP residues 14-261
1
nat
polymer
284.436
RETINAL
1
syn
non-polymer
653.157
2,3-DI-PHYTANYL-GLYCEROL
3
syn
non-polymer
184.361
TRIDECANE
1
syn
non-polymer
142.282
DECANE
1
syn
non-polymer
100.202
HEPTANE
1
syn
non-polymer
114.229
N-OCTANE
3
syn
non-polymer
212.415
PENTADECANE
2
syn
non-polymer
156.308
UNDECANE
2
syn
non-polymer
128.255
nonane
1
syn
non-polymer
198.388
TETRADECANE
1
syn
non-polymer
18.015
water
19
nat
water
BR,Bacterioopsin,BO
no
no
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA
GDGAAATS
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA
GDGAAATS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
248
64091
Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
ATCC 700922 / JCM 11081 / NRC-1
1
2.35
47.77
LIPIDIC CUBIC PHASE
0.1M Na/K phosphate pH5.4, 30% PEG 2000
293
diffrn_source
chem_comp_atom
chem_comp_bond
database_2
pdbx_related_exp_data_set
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Data collection
Database references
Refinement description
1
0
2016-12-21
1
1
2017-02-01
1
2
2018-01-24
1
3
2023-09-06
1
4
2023-11-08
_diffrn_source.pdbx_synchrotron_beamline
_diffrn_source.pdbx_synchrotron_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBJ
Y
PDBJ
2016-06-02
REL
REL
RET
RETINAL
L2P
2,3-DI-PHYTANYL-GLYCEROL
TRD
TRIDECANE
D10
DECANE
HP6
HEPTANE
OCT
N-OCTANE
MYS
PENTADECANE
UND
UNDECANE
DD9
nonane
C14
TETRADECANE
HOH
water
Ligands TRD, D10, HP6, OCT, MYS, UND, DD9, and C14 are modeled as a lipid fragment.
5B6V
PDB
experimental model
RET
300
2
RET
RET
300
A
L2P
600
3
L2P
L2P
600
A
TRD
601
4
TRD
TRD
601
A
D10
602
5
D10
D10
602
A
HP6
603
6
HP6
HP6
603
A
OCT
604
7
OCT
OCT
604
A
OCT
605
7
OCT
OCT
605
A
MYS
606
8
MYS
MYS
606
A
UND
607
9
UND
UND
607
A
L2P
608
3
L2P
L2P
608
A
L2P
609
3
L2P
L2P
609
A
MYS
610
8
MYS
MYS
610
A
DD9
611
10
DD9
DD9
611
A
C14
612
11
C14
C14
612
A
OCT
613
7
OCT
OCT
613
A
UND
614
9
UND
UND
614
A
HOH
400
12
HOH
HOH
400
A
HOH
401
12
HOH
HOH
401
A
HOH
402
12
HOH
HOH
402
A
HOH
403
12
HOH
HOH
403
A
HOH
404
12
HOH
HOH
404
A
HOH
405
12
HOH
HOH
405
A
HOH
406
12
HOH
HOH
406
A
HOH
407
12
HOH
HOH
407
A
HOH
408
12
HOH
HOH
408
A
HOH
414
12
HOH
HOH
414
A
HOH
425
12
HOH
HOH
425
A
HOH
424
12
HOH
HOH
424
A
HOH
433
12
HOH
HOH
433
A
HOH
438
12
HOH
HOH
438
A
HOH
441
12
HOH
HOH
441
A
HOH
442
12
HOH
HOH
442
A
HOH
443
12
HOH
HOH
443
A
HOH
452
12
HOH
HOH
452
A
HOH
453
12
HOH
HOH
453
A
n
1
1
A
n
2
2
A
n
3
3
A
ILE
4
n
4
ILE
4
A
THR
5
n
5
THR
5
A
GLY
6
n
6
GLY
6
A
ARG
7
n
7
ARG
7
A
PRO
8
n
8
PRO
8
A
GLU
9
n
9
GLU
9
A
TRP
10
n
10
TRP
10
A
ILE
11
n
11
ILE
11
A
TRP
12
n
12
TRP
12
A
LEU
13
n
13
LEU
13
A
ALA
14
n
14
ALA
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
THR
17
n
17
THR
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
MET
20
n
20
MET
20
A
GLY
21
n
21
GLY
21
A
LEU
22
n
22
LEU
22
A
GLY
23
n
23
GLY
23
A
THR
24
n
24
THR
24
A
LEU
25
n
25
LEU
25
A
TYR
26
n
26
TYR
26
A
PHE
27
n
27
PHE
27
A
LEU
28
n
28
LEU
28
A
VAL
29
n
29
VAL
29
A
LYS
30
n
30
LYS
30
A
GLY
31
n
31
GLY
31
A
MET
32
n
32
MET
32
A
GLY
33
n
33
GLY
33
A
VAL
34
n
34
VAL
34
A
SER
35
n
35
SER
35
A
ASP
36
n
36
ASP
36
A
PRO
37
n
37
PRO
37
A
ASP
38
n
38
ASP
38
A
ALA
39
n
39
ALA
39
A
LYS
40
n
40
LYS
40
A
LYS
41
n
41
LYS
41
A
PHE
42
n
42
PHE
42
A
TYR
43
n
43
TYR
43
A
ALA
44
n
44
ALA
44
A
ILE
45
n
45
ILE
45
A
THR
46
n
46
THR
46
A
THR
47
n
47
THR
47
A
LEU
48
n
48
LEU
48
A
VAL
49
n
49
VAL
49
A
PRO
50
n
50
PRO
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
ALA
53
n
53
ALA
53
A
PHE
54
n
54
PHE
54
A
THR
55
n
55
THR
55
A
MET
56
n
56
MET
56
A
TYR
57
n
57
TYR
57
A
LEU
58
n
58
LEU
58
A
SER
59
n
59
SER
59
A
MET
60
n
60
MET
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
GLY
63
n
63
GLY
63
A
TYR
64
n
64
TYR
64
A
GLY
65
n
65
GLY
65
A
LEU
66
n
66
LEU
66
A
THR
67
n
67
THR
67
A
MET
68
n
68
MET
68
A
VAL
69
n
69
VAL
69
A
PRO
70
n
70
PRO
70
A
PHE
71
n
71
PHE
71
A
GLY
72
n
72
GLY
72
A
GLY
73
n
73
GLY
73
A
GLU
74
n
74
GLU
74
A
GLN
75
n
75
GLN
75
A
ASN
76
n
76
ASN
76
A
PRO
77
n
77
PRO
77
A
ILE
78
n
78
ILE
78
A
TYR
79
n
79
TYR
79
A
TRP
80
n
80
TRP
80
A
ALA
81
n
81
ALA
81
A
ARG
82
n
82
ARG
82
A
TYR
83
n
83
TYR
83
A
ALA
84
n
84
ALA
84
A
ASP
85
n
85
ASP
85
A
TRP
86
n
86
TRP
86
A
LEU
87
n
87
LEU
87
A
PHE
88
n
88
PHE
88
A
THR
89
n
89
THR
89
A
THR
90
n
90
THR
90
A
PRO
91
n
91
PRO
91
A
LEU
92
n
92
LEU
92
A
LEU
93
n
93
LEU
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
ASP
96
n
96
ASP
96
A
LEU
97
n
97
LEU
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
LEU
100
n
100
LEU
100
A
VAL
101
n
101
VAL
101
A
ASP
102
n
102
ASP
102
A
ALA
103
n
103
ALA
103
A
ASP
104
n
104
ASP
104
A
GLN
105
n
105
GLN
105
A
GLY
106
n
106
GLY
106
A
THR
107
n
107
THR
107
A
ILE
108
n
108
ILE
108
A
LEU
109
n
109
LEU
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
VAL
112
n
112
VAL
112
A
GLY
113
n
113
GLY
113
A
ALA
114
n
114
ALA
114
A
ASP
115
n
115
ASP
115
A
GLY
116
n
116
GLY
116
A
ILE
117
n
117
ILE
117
A
MET
118
n
118
MET
118
A
ILE
119
n
119
ILE
119
A
GLY
120
n
120
GLY
120
A
THR
121
n
121
THR
121
A
GLY
122
n
122
GLY
122
A
LEU
123
n
123
LEU
123
A
VAL
124
n
124
VAL
124
A
GLY
125
n
125
GLY
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
THR
128
n
128
THR
128
A
LYS
129
n
129
LYS
129
A
VAL
130
n
130
VAL
130
A
TYR
131
n
131
TYR
131
A
SER
132
n
132
SER
132
A
TYR
133
n
133
TYR
133
A
ARG
134
n
134
ARG
134
A
PHE
135
n
135
PHE
135
A
VAL
136
n
136
VAL
136
A
TRP
137
n
137
TRP
137
A
TRP
138
n
138
TRP
138
A
ALA
139
n
139
ALA
139
A
ILE
140
n
140
ILE
140
A
SER
141
n
141
SER
141
A
THR
142
n
142
THR
142
A
ALA
143
n
143
ALA
143
A
ALA
144
n
144
ALA
144
A
MET
145
n
145
MET
145
A
LEU
146
n
146
LEU
146
A
TYR
147
n
147
TYR
147
A
ILE
148
n
148
ILE
148
A
LEU
149
n
149
LEU
149
A
TYR
150
n
150
TYR
150
A
VAL
151
n
151
VAL
151
A
LEU
152
n
152
LEU
152
A
PHE
153
n
153
PHE
153
A
PHE
154
n
154
PHE
154
A
GLY
155
n
155
GLY
155
A
PHE
156
n
156
PHE
156
A
THR
157
n
157
THR
157
A
SER
158
n
158
SER
158
A
LYS
159
n
159
LYS
159
A
ALA
160
n
160
ALA
160
A
GLU
161
n
161
GLU
161
A
SER
162
n
162
SER
162
A
MET
163
n
163
MET
163
A
ARG
164
n
164
ARG
164
A
PRO
165
n
165
PRO
165
A
GLU
166
n
166
GLU
166
A
VAL
167
n
167
VAL
167
A
ALA
168
n
168
ALA
168
A
SER
169
n
169
SER
169
A
THR
170
n
170
THR
170
A
PHE
171
n
171
PHE
171
A
LYS
172
n
172
LYS
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
ARG
175
n
175
ARG
175
A
ASN
176
n
176
ASN
176
A
VAL
177
n
177
VAL
177
A
THR
178
n
178
THR
178
A
VAL
179
n
179
VAL
179
A
VAL
180
n
180
VAL
180
A
LEU
181
n
181
LEU
181
A
TRP
182
n
182
TRP
182
A
SER
183
n
183
SER
183
A
ALA
184
n
184
ALA
184
A
TYR
185
n
185
TYR
185
A
PRO
186
n
186
PRO
186
A
VAL
187
n
187
VAL
187
A
VAL
188
n
188
VAL
188
A
TRP
189
n
189
TRP
189
A
LEU
190
n
190
LEU
190
A
ILE
191
n
191
ILE
191
A
GLY
192
n
192
GLY
192
A
SER
193
n
193
SER
193
A
GLU
194
n
194
GLU
194
A
GLY
195
n
195
GLY
195
A
ALA
196
n
196
ALA
196
A
GLY
197
n
197
GLY
197
A
ILE
198
n
198
ILE
198
A
VAL
199
n
199
VAL
199
A
PRO
200
n
200
PRO
200
A
LEU
201
n
201
LEU
201
A
ASN
202
n
202
ASN
202
A
ILE
203
n
203
ILE
203
A
GLU
204
n
204
GLU
204
A
THR
205
n
205
THR
205
A
LEU
206
n
206
LEU
206
A
LEU
207
n
207
LEU
207
A
PHE
208
n
208
PHE
208
A
MET
209
n
209
MET
209
A
VAL
210
n
210
VAL
210
A
LEU
211
n
211
LEU
211
A
ASP
212
n
212
ASP
212
A
VAL
213
n
213
VAL
213
A
SER
214
n
214
SER
214
A
ALA
215
n
215
ALA
215
A
LYS
216
n
216
LYS
216
A
VAL
217
n
217
VAL
217
A
GLY
218
n
218
GLY
218
A
PHE
219
n
219
PHE
219
A
GLY
220
n
220
GLY
220
A
LEU
221
n
221
LEU
221
A
ILE
222
n
222
ILE
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
ARG
225
n
225
ARG
225
A
SER
226
n
226
SER
226
A
ARG
227
n
227
ARG
227
A
ALA
228
n
228
ALA
228
A
ILE
229
n
229
ILE
229
A
PHE
230
n
230
PHE
230
A
GLY
231
n
231
GLY
231
A
GLU
232
n
232
GLU
232
A
ALA
233
n
233
ALA
233
A
GLU
234
n
234
GLU
234
A
n
235
235
A
n
236
236
A
n
237
237
A
n
238
238
A
n
239
239
A
n
240
240
A
n
241
241
A
n
242
242
A
n
243
243
A
n
244
244
A
n
245
245
A
n
246
246
A
n
247
247
A
n
248
248
A
10.11577/1337005
diffraction image data
author_and_software_defined_assembly
PISA
3
trimeric
25220
-117
28500
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_455
-y-1,x-y,z
crystal symmetry operation
-62.5000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_445
-x+y-1,-x-1,z
crystal symmetry operation
-31.2500000000
-54.1265877365
0.0000000000
A
N
THR
67
A
N
THR
67
A
O
ILE
78
A
O
ILE
78
1
A
C3
L2P
600
C
C3
L2P
1
1
N
1
A
O3
L2P
600
C
O3
L2P
1
1
N
1
A
C12
L2P
600
C
C12
L2P
1
1
N
1
A
C13
L2P
600
C
C13
L2P
1
1
N
1
A
C14
L2P
600
C
C14
L2P
1
1
N
1
A
C15
L2P
600
C
C15
L2P
1
1
N
1
A
C16
L2P
600
C
C16
L2P
1
1
N
1
A
C17
L2P
600
C
C17
L2P
1
1
N
1
A
C18
L2P
600
C
C18
L2P
1
1
N
1
A
C19
L2P
600
C
C19
L2P
1
1
N
1
A
C20
L2P
600
C
C20
L2P
1
1
N
1
A
C21
L2P
600
C
C21
L2P
1
1
N
1
A
C22
L2P
600
C
C22
L2P
1
1
N
1
A
C23
L2P
600
C
C23
L2P
1
1
N
1
A
C24
L2P
600
C
C24
L2P
1
1
N
1
A
C25
L2P
600
C
C25
L2P
1
1
N
1
A
C26
L2P
600
C
C26
L2P
1
1
N
1
A
C27
L2P
600
C
C27
L2P
1
1
N
1
A
C28
L2P
600
C
C28
L2P
1
1
N
1
A
C29
L2P
600
C
C29
L2P
1
1
N
1
A
C30
L2P
600
C
C30
L2P
1
1
N
1
A
C2
L2P
608
K
C2
L2P
1
1
N
1
A
O2
L2P
608
K
O2
L2P
1
1
N
1
A
C3
L2P
608
K
C3
L2P
1
1
N
1
A
O3
L2P
608
K
O3
L2P
1
1
N
1
A
C41
L2P
608
K
C41
L2P
1
1
N
1
A
C42
L2P
608
K
C42
L2P
1
1
N
1
A
C43
L2P
608
K
C43
L2P
1
1
N
1
A
C44
L2P
608
K
C44
L2P
1
1
N
1
A
C45
L2P
608
K
C45
L2P
1
1
N
1
A
C46
L2P
608
K
C46
L2P
1
1
N
1
A
C47
L2P
608
K
C47
L2P
1
1
N
1
A
C48
L2P
608
K
C48
L2P
1
1
N
1
A
C49
L2P
608
K
C49
L2P
1
1
N
1
A
C50
L2P
608
K
C50
L2P
1
1
N
1
A
C51
L2P
608
K
C51
L2P
1
1
N
1
A
C52
L2P
608
K
C52
L2P
1
1
N
1
A
C53
L2P
608
K
C53
L2P
1
1
N
1
A
C54
L2P
608
K
C54
L2P
1
1
N
1
A
C55
L2P
608
K
C55
L2P
1
1
N
1
A
C56
L2P
608
K
C56
L2P
1
1
N
1
A
C57
L2P
608
K
C57
L2P
1
1
N
1
A
C58
L2P
608
K
C58
L2P
1
1
N
1
A
C59
L2P
608
K
C59
L2P
1
1
N
1
A
C60
L2P
608
K
C60
L2P
1
1
N
1
A
GLN
1
A
GLN
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
ALA
235
A
ALA
235
1
Y
1
A
PRO
236
A
PRO
236
1
Y
1
A
GLU
237
A
GLU
237
1
Y
1
A
PRO
238
A
PRO
238
1
Y
1
A
SER
239
A
SER
239
1
Y
1
A
ALA
240
A
ALA
240
1
Y
1
A
GLY
241
A
GLY
241
1
Y
1
A
ASP
242
A
ASP
242
1
Y
1
A
GLY
243
A
GLY
243
1
Y
1
A
ALA
244
A
ALA
244
1
Y
1
A
ALA
245
A
ALA
245
1
Y
1
A
ALA
246
A
ALA
246
1
Y
1
A
THR
247
A
THR
247
1
Y
1
A
SER
248
A
SER
248
1
Y
1
A
VAL
217
B
-143.75
-57.25
0.1733
0.1572
0.1581
2.100
21.912
719
14474
4.97
99.99
0.13
1
FREE R-VALUE
1.40
MOLECULAR REPLACEMENT
19.97
0.90
1.11
5B6V
ML
FLAT BULK SOLVENT MODEL
2.100
21.912
19
2048
242
0
1787
0.003
2267
0.829
3030
16.787
1314
0.038
343
0.003
331
0.2275
0.2147
2.2621
144
2730
100.00
0.1665
0.1622
2.4895
131
2749
100.00
0.1752
0.1455
2.8491
142
2771
100.00
0.1641
0.1500
3.5870
143
2729
100.00
0.1727
0.1569
21.9128
159
2776
100.00
2.1
39.92
5B6X
14513
1
8.80
237
100
2.00
2.07
1
refinement
PHENIX
1.10_2155
data reduction
CrystFEL
0.6.2
data scaling
CrystFEL
0.6.2
N
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 760 ns after photoexcitation
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
7
N
N
8
N
N
9
N
N
3
N
N
3
N
N
8
N
N
10
N
N
11
N
N
7
N
N
9
N
N
12
N
N
A
GLU
9
A
GLU
9
HELX_P
A
GLY
31
A
GLY
31
1
AA1
23
A
ASP
36
A
ASP
36
HELX_P
A
LEU
62
A
LEU
62
1
AA2
27
A
TRP
80
A
TRP
80
HELX_P
A
VAL
101
A
VAL
101
1
AA3
22
A
ASP
104
A
ASP
104
HELX_P
A
THR
128
A
THR
128
1
AA4
25
A
VAL
130
A
VAL
130
HELX_P
A
PHE
154
A
PHE
154
1
AA5
25
A
PHE
156
A
PHE
156
HELX_P
A
SER
162
A
SER
162
1
AA6
7
A
ARG
164
A
ARG
164
HELX_P
A
GLY
192
A
GLY
192
1
AA7
29
A
PRO
200
A
PRO
200
HELX_P
A
ARG
225
A
ARG
225
1
AA8
26
A
SER
226
A
SER
226
HELX_P
A
PHE
230
A
PHE
230
5
AA9
5
covale
1.311
one
A
A
A
LYS
216
A
NZ
LYS
216
1_555
A
RET
300
B
C15
RET
1_555
covale
1.310
one
B
B
A
LYS
216
A
NZ
LYS
216
1_555
A
RET
300
B
C15
RET
1_555
PROTON TRANSPORT
bacteriorhodopsin, XFEL, time- resolved serial femtosecond crystallography, SACLA, PROTON TRANSPORT
BACR_HALSA
UNP
1
14
P02945
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA
GDGAAATS
14
261
5B6X
1
248
P02945
A
1
1
248
2
anti-parallel
A
LEU
66
A
LEU
66
A
PHE
71
A
PHE
71
A
GLU
74
A
GLU
74
A
TYR
79
A
TYR
79
binding site for residue RET A 300
A
RET
300
Software
11
binding site for residue L2P A 600
A
L2P
600
Software
6
binding site for residue TRD A 601
A
TRD
601
Software
1
binding site for residue D10 A 602
A
D10
602
Software
3
binding site for residue HP6 A 603
A
HP6
603
Software
1
binding site for residue OCT A 604
A
OCT
604
Software
1
binding site for residue OCT A 605
A
OCT
605
Software
1
binding site for residue MYS A 606
A
MYS
606
Software
2
binding site for residue UND A 607
A
UND
607
Software
1
binding site for residue L2P A 608
A
L2P
608
Software
5
binding site for residue L2P A 609
A
L2P
609
Software
12
binding site for residue MYS A 610
A
MYS
610
Software
1
binding site for residue DD9 A 611
A
DD9
611
Software
1
binding site for residue C14 A 612
A
C14
612
Software
4
binding site for residue OCT A 613
A
OCT
613
Software
1
A
TRP
86
A
TRP
86
11
1_555
A
THR
90
A
THR
90
11
1_555
A
TRP
138
A
TRP
138
11
1_555
A
SER
141
A
SER
141
11
1_555
A
THR
142
A
THR
142
11
1_555
A
TRP
182
A
TRP
182
11
1_555
A
TYR
185
A
TYR
185
11
1_555
A
PRO
186
A
PRO
186
11
1_555
A
ASP
212
A
ASP
212
11
1_555
A
ALA
215
A
ALA
215
11
1_555
A
LYS
216
A
LYS
216
11
1_555
A
ALA
44
A
ALA
44
6
2_455
A
LEU
48
A
LEU
48
6
2_455
A
PHE
54
A
PHE
54
6
2_455
A
THR
107
A
THR
107
6
1_555
A
TYR
147
A
TYR
147
6
1_555
A
D10
602
E
D10
6
2_455
A
LEU
149
A
LEU
149
1
1_555
A
LEU
22
A
LEU
22
3
1_555
A
L2P
600
C
L2P
3
3_445
A
HP6
603
F
HP6
3
1_555
A
D10
602
E
D10
1
1_555
A
LYS
172
A
LYS
172
1
1_555
A
MYS
606
I
MYS
1
1_555
A
OCT
605
H
OCT
2
1_555
A
L2P
608
K
L2P
2
2_555
A
L2P
608
K
L2P
1
1_555
A
TYR
131
A
TYR
131
5
1_555
A
TRP
138
A
TRP
138
5
1_555
A
ILE
203
A
ILE
203
5
3_555
A
MYS
606
I
MYS
5
3_555
A
UND
607
J
UND
5
1_555
A
ILE
52
A
ILE
52
12
1_555
A
MET
56
A
MET
56
12
1_555
A
TYR
64
A
TYR
64
12
1_555
A
TRP
80
A
TRP
80
12
1_555
A
ALA
84
A
ALA
84
12
1_555
A
GLY
116
A
GLY
116
12
3_445
A
ILE
117
A
ILE
117
12
3_445
A
GLY
120
A
GLY
120
12
3_445
A
LEU
123
A
LEU
123
12
3_445
A
LEU
123
A
LEU
123
12
1_555
A
VAL
124
A
VAL
124
12
3_445
A
C14
612
O
C14
12
3_445
A
TYR
26
A
TYR
26
1
1_555
A
ARG
225
A
ARG
225
1
1_555
A
LEU
87
A
LEU
87
4
1_555
A
PRO
91
A
PRO
91
4
1_555
A
LEU
95
A
LEU
95
4
1_555
A
L2P
609
L
L2P
4
2_455
A
TYR
26
A
TYR
26
1
1_555
173
P 63