0.016122
0.000000
0.000000
-0.000000
0.013985
0.000000
0.000000
-0.000000
0.013041
0.000000
0.000000
0.000000
Murray, C.
Berdini, V.
Buck, I.
Carr, M.
Cleasby, A.
Coyle, J.
Curry, J.
Day, J.
Hearn, K.
Iqbal, A.
Lee, L.
Martins, V.
Mortenson, P.
Munck, J.
Page, L.
Patel, S.
Roomans, S.
Kirsten, T.
Saxty, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
62.026
71.505
76.682
C13 H12 Cl N3 O
261.707
1-(2-chlorophenyl)-3-(pyridin-3-ylmethyl)urea
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Acs Med.Chem.Lett.
1948-5875
6
798
803
10.1021/acsmedchemlett.5b00143
26191369
Fragment-Based Discovery of Potent and Selective DDR1/2 Inhibitors.
2015
93
1
PIXEL
2009-05-08
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
1.0726
1.0
ID23-1
ESRF
1.0726
SYNCHROTRON
ESRF BEAMLINE ID23-1
36435.785
Epithelial discoidin domain-containing receptor 1
2.7.10.1
residues 576-894
1
man
polymer
126.904
IODIDE ION
6
syn
non-polymer
261.707
1-(2-chlorophenyl)-3-(pyridin-3-ylmethyl)urea
1
syn
non-polymer
18.015
water
113
nat
water
Epithelial discoidin domain receptor 1,CD167 antigen-like family member A,Cell adhesion kinase,Discoidin receptor tyrosine kinase,HGK2,Mammary carcinoma kinase 10,MCK-10,Protein-tyrosine kinase 3A,Protein-tyrosine kinase RTK-6,TRK E,Tyrosine kinase DDR,Tyrosine-protein kinase CAK
no
no
GAMGSAVGDGPPRVDFPRSRLRFKEKLGEGQFGEVHLCEVDSPQDLVSLDFPLNVRKGHPLLVAVKILRPDATKNARNDF
LKEVKIMSRLKDPNIIRLLGVCVQDDPLCMITDYMENGDLNQFLSAHQLEDKAAEGAPGDGQAAQGPTISYPMLLHVAAQ
IASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFTTASDVWAF
GVTLWEVLMLCRAQPFGQLTDEQVIENAGEFFRDQGRQVYLSRPPACPQGLYELMLRCWSRESEQRPPFSQLHRFLAEDA
LNTV
GAMGSAVGDGPPRVDFPRSRLRFKEKLGEGQFGEVHLCEVDSPQDLVSLDFPLNVRKGHPLLVAVKILRPDATKNARNDF
LKEVKIMSRLKDPNIIRLLGVCVQDDPLCMITDYMENGDLNQFLSAHQLEDKAAEGAPGDGQAAQGPTISYPMLLHVAAQ
IASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFTTASDVWAF
GVTLWEVLMLCRAQPFGQLTDEQVIENAGEFFRDQGRQVYLSRPPACPQGLYELMLRCWSRESEQRPPFSQLHRFLAEDA
LNTV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
324
DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE
9606
Homo sapiens
562
Escherichia coli
Biological sequence
2.33
47.29
VAPOR DIFFUSION
15-25% (W/V) PEG3350, 0.2M NH4I
277
repository
Initial release
1
0
2015-08-05
N
RCSB
Y
PDBE
2015-06-05
REL
REL
IOD
IODIDE ION
4VC
1-(2-chlorophenyl)-3-(pyridin-3-ylmethyl)urea
HOH
water
IOD
1
2
IOD
IOD
1001
A
IOD
2
2
IOD
IOD
1002
A
IOD
3
2
IOD
IOD
1003
A
IOD
5
2
IOD
IOD
1004
A
IOD
6
2
IOD
IOD
1005
A
IOD
156
2
IOD
IOD
1006
A
L01
1
3
4VC
4VC
1007
A
HOH
165
4
HOH
HOH
1101
A
HOH
81
4
HOH
HOH
1102
A
HOH
16
4
HOH
HOH
1103
A
HOH
58
4
HOH
HOH
1104
A
HOH
20
4
HOH
HOH
1105
A
HOH
38
4
HOH
HOH
1106
A
HOH
57
4
HOH
HOH
1107
A
HOH
141
4
HOH
HOH
1108
A
HOH
74
4
HOH
HOH
1109
A
HOH
5
4
HOH
HOH
1110
A
HOH
49
4
HOH
HOH
1111
A
HOH
13
4
HOH
HOH
1112
A
HOH
4
4
HOH
HOH
1113
A
HOH
9
4
HOH
HOH
1114
A
HOH
7
4
HOH
HOH
1115
A
HOH
52
4
HOH
HOH
1116
A
HOH
36
4
HOH
HOH
1117
A
HOH
152
4
HOH
HOH
1118
A
HOH
25
4
HOH
HOH
1119
A
HOH
132
4
HOH
HOH
1120
A
HOH
155
4
HOH
HOH
1121
A
HOH
161
4
HOH
HOH
1122
A
HOH
40
4
HOH
HOH
1123
A
HOH
59
4
HOH
HOH
1124
A
HOH
164
4
HOH
HOH
1125
A
HOH
43
4
HOH
HOH
1126
A
HOH
46
4
HOH
HOH
1127
A
HOH
23
4
HOH
HOH
1128
A
HOH
76
4
HOH
HOH
1129
A
HOH
61
4
HOH
HOH
1130
A
HOH
91
4
HOH
HOH
1131
A
HOH
54
4
HOH
HOH
1132
A
HOH
128
4
HOH
HOH
1133
A
HOH
127
4
HOH
HOH
1134
A
HOH
83
4
HOH
HOH
1135
A
HOH
126
4
HOH
HOH
1136
A
HOH
22
4
HOH
HOH
1137
A
HOH
160
4
HOH
HOH
1138
A
HOH
89
4
HOH
HOH
1139
A
HOH
10
4
HOH
HOH
1140
A
HOH
39
4
HOH
HOH
1141
A
HOH
90
4
HOH
HOH
1142
A
HOH
8
4
HOH
HOH
1143
A
HOH
64
4
HOH
HOH
1144
A
HOH
157
4
HOH
HOH
1145
A
HOH
15
4
HOH
HOH
1146
A
HOH
12
4
HOH
HOH
1147
A
HOH
37
4
HOH
HOH
1148
A
HOH
162
4
HOH
HOH
1149
A
HOH
131
4
HOH
HOH
1150
A
HOH
119
4
HOH
HOH
1151
A
HOH
55
4
HOH
HOH
1152
A
HOH
33
4
HOH
HOH
1153
A
HOH
92
4
HOH
HOH
1154
A
HOH
21
4
HOH
HOH
1155
A
HOH
129
4
HOH
HOH
1156
A
HOH
113
4
HOH
HOH
1157
A
HOH
27
4
HOH
HOH
1158
A
HOH
108
4
HOH
HOH
1159
A
HOH
32
4
HOH
HOH
1160
A
HOH
149
4
HOH
HOH
1161
A
HOH
63
4
HOH
HOH
1162
A
HOH
145
4
HOH
HOH
1163
A
HOH
45
4
HOH
HOH
1164
A
HOH
79
4
HOH
HOH
1165
A
HOH
115
4
HOH
HOH
1166
A
HOH
158
4
HOH
HOH
1167
A
HOH
77
4
HOH
HOH
1168
A
HOH
116
4
HOH
HOH
1169
A
HOH
53
4
HOH
HOH
1170
A
HOH
44
4
HOH
HOH
1171
A
HOH
2
4
HOH
HOH
1172
A
HOH
1
4
HOH
HOH
1173
A
HOH
75
4
HOH
HOH
1174
A
HOH
6
4
HOH
HOH
1175
A
HOH
95
4
HOH
HOH
1176
A
HOH
67
4
HOH
HOH
1177
A
HOH
117
4
HOH
HOH
1178
A
HOH
34
4
HOH
HOH
1179
A
HOH
48
4
HOH
HOH
1180
A
HOH
17
4
HOH
HOH
1181
A
HOH
114
4
HOH
HOH
1182
A
HOH
3
4
HOH
HOH
1183
A
HOH
106
4
HOH
HOH
1184
A
HOH
18
4
HOH
HOH
1185
A
HOH
134
4
HOH
HOH
1186
A
HOH
19
4
HOH
HOH
1187
A
HOH
66
4
HOH
HOH
1188
A
HOH
47
4
HOH
HOH
1189
A
HOH
86
4
HOH
HOH
1190
A
HOH
159
4
HOH
HOH
1191
A
HOH
35
4
HOH
HOH
1192
A
HOH
133
4
HOH
HOH
1193
A
HOH
56
4
HOH
HOH
1194
A
HOH
88
4
HOH
HOH
1195
A
HOH
123
4
HOH
HOH
1196
A
HOH
71
4
HOH
HOH
1197
A
HOH
125
4
HOH
HOH
1198
A
HOH
62
4
HOH
HOH
1199
A
HOH
28
4
HOH
HOH
1200
A
HOH
151
4
HOH
HOH
1201
A
HOH
98
4
HOH
HOH
1202
A
HOH
154
4
HOH
HOH
1203
A
HOH
143
4
HOH
HOH
1204
A
HOH
144
4
HOH
HOH
1205
A
HOH
163
4
HOH
HOH
1206
A
HOH
121
4
HOH
HOH
1207
A
HOH
130
4
HOH
HOH
1208
A
HOH
105
4
HOH
HOH
1209
A
HOH
135
4
HOH
HOH
1210
A
HOH
137
4
HOH
HOH
1211
A
HOH
97
4
HOH
HOH
1212
A
HOH
26
4
HOH
HOH
1213
A
n
1
590
A
n
2
591
A
n
3
592
A
n
4
593
A
n
5
594
A
n
6
595
A
n
7
596
A
n
8
597
A
n
9
598
A
n
10
599
A
n
11
600
A
n
12
601
A
n
13
602
A
n
14
603
A
ASP
604
n
15
ASP
604
A
PHE
605
n
16
PHE
605
A
PRO
606
n
17
PRO
606
A
ARG
607
n
18
ARG
607
A
SER
608
n
19
SER
608
A
ARG
609
n
20
ARG
609
A
LEU
610
n
21
LEU
610
A
ARG
611
n
22
ARG
611
A
PHE
612
n
23
PHE
612
A
LYS
613
n
24
LYS
613
A
GLU
614
n
25
GLU
614
A
LYS
615
n
26
LYS
615
A
LEU
616
n
27
LEU
616
A
GLY
617
n
28
GLY
617
A
GLU
618
n
29
GLU
618
A
GLY
619
n
30
GLY
619
A
GLN
620
n
31
GLN
620
A
PHE
621
n
32
PHE
621
A
GLY
622
n
33
GLY
622
A
GLU
623
n
34
GLU
623
A
VAL
624
n
35
VAL
624
A
HIS
625
n
36
HIS
625
A
LEU
626
n
37
LEU
626
A
CYS
627
n
38
CYS
627
A
GLU
628
n
39
GLU
628
A
VAL
629
n
40
VAL
629
A
ASP
630
n
41
ASP
630
A
SER
631
n
42
SER
631
A
n
43
632
A
n
44
633
A
n
45
634
A
n
46
635
A
n
47
636
A
n
48
637
A
n
49
638
A
n
50
639
A
n
51
640
A
n
52
641
A
n
53
642
A
n
54
643
A
n
55
644
A
n
56
645
A
n
57
646
A
n
58
647
A
HIS
648
n
59
HIS
648
A
PRO
649
n
60
PRO
649
A
LEU
650
n
61
LEU
650
A
LEU
651
n
62
LEU
651
A
VAL
652
n
63
VAL
652
A
ALA
653
n
64
ALA
653
A
VAL
654
n
65
VAL
654
A
LYS
655
n
66
LYS
655
A
ILE
656
n
67
ILE
656
A
LEU
657
n
68
LEU
657
A
ARG
658
n
69
ARG
658
A
PRO
659
n
70
PRO
659
A
ASP
660
n
71
ASP
660
A
ALA
661
n
72
ALA
661
A
THR
662
n
73
THR
662
A
LYS
663
n
74
LYS
663
A
ASN
664
n
75
ASN
664
A
ALA
665
n
76
ALA
665
A
ARG
666
n
77
ARG
666
A
ASN
667
n
78
ASN
667
A
ASP
668
n
79
ASP
668
A
PHE
669
n
80
PHE
669
A
LEU
670
n
81
LEU
670
A
LYS
671
n
82
LYS
671
A
GLU
672
n
83
GLU
672
A
VAL
673
n
84
VAL
673
A
LYS
674
n
85
LYS
674
A
ILE
675
n
86
ILE
675
A
MET
676
n
87
MET
676
A
SER
677
n
88
SER
677
A
ARG
678
n
89
ARG
678
A
LEU
679
n
90
LEU
679
A
LYS
680
n
91
LYS
680
A
ASP
681
n
92
ASP
681
A
PRO
682
n
93
PRO
682
A
ASN
683
n
94
ASN
683
A
ILE
684
n
95
ILE
684
A
ILE
685
n
96
ILE
685
A
ARG
686
n
97
ARG
686
A
LEU
687
n
98
LEU
687
A
LEU
688
n
99
LEU
688
A
GLY
689
n
100
GLY
689
A
VAL
690
n
101
VAL
690
A
CYS
691
n
102
CYS
691
A
VAL
692
n
103
VAL
692
A
GLN
693
n
104
GLN
693
A
ASP
694
n
105
ASP
694
A
ASP
695
n
106
ASP
695
A
PRO
696
n
107
PRO
696
A
LEU
697
n
108
LEU
697
A
CYS
698
n
109
CYS
698
A
MET
699
n
110
MET
699
A
ILE
700
n
111
ILE
700
A
THR
701
n
112
THR
701
A
ASP
702
n
113
ASP
702
A
TYR
703
n
114
TYR
703
A
MET
704
n
115
MET
704
A
GLU
705
n
116
GLU
705
A
ASN
706
n
117
ASN
706
A
GLY
707
n
118
GLY
707
A
ASP
708
n
119
ASP
708
A
LEU
709
n
120
LEU
709
A
ASN
710
n
121
ASN
710
A
GLN
711
n
122
GLN
711
A
PHE
712
n
123
PHE
712
A
LEU
713
n
124
LEU
713
A
SER
714
n
125
SER
714
A
ALA
715
n
126
ALA
715
A
HIS
716
n
127
HIS
716
A
GLN
717
n
128
GLN
717
A
LEU
718
n
129
LEU
718
A
GLU
719
n
130
GLU
719
A
ASP
720
n
131
ASP
720
A
LYS
721
n
132
LYS
721
A
n
133
722
A
n
134
723
A
n
135
724
A
n
136
725
A
n
137
726
A
n
138
727
A
n
139
728
A
n
140
729
A
n
141
730
A
n
142
731
A
n
143
732
A
n
144
733
A
n
145
734
A
n
146
735
A
PRO
736
n
147
PRO
736
A
THR
737
n
148
THR
737
A
ILE
738
n
149
ILE
738
A
SER
739
n
150
SER
739
A
TYR
740
n
151
TYR
740
A
PRO
741
n
152
PRO
741
A
MET
742
n
153
MET
742
A
LEU
743
n
154
LEU
743
A
LEU
744
n
155
LEU
744
A
HIS
745
n
156
HIS
745
A
VAL
746
n
157
VAL
746
A
ALA
747
n
158
ALA
747
A
ALA
748
n
159
ALA
748
A
GLN
749
n
160
GLN
749
A
ILE
750
n
161
ILE
750
A
ALA
751
n
162
ALA
751
A
SER
752
n
163
SER
752
A
GLY
753
n
164
GLY
753
A
MET
754
n
165
MET
754
A
ARG
755
n
166
ARG
755
A
TYR
756
n
167
TYR
756
A
LEU
757
n
168
LEU
757
A
ALA
758
n
169
ALA
758
A
THR
759
n
170
THR
759
A
LEU
760
n
171
LEU
760
A
ASN
761
n
172
ASN
761
A
PHE
762
n
173
PHE
762
A
VAL
763
n
174
VAL
763
A
HIS
764
n
175
HIS
764
A
ARG
765
n
176
ARG
765
A
ASP
766
n
177
ASP
766
A
LEU
767
n
178
LEU
767
A
ALA
768
n
179
ALA
768
A
THR
769
n
180
THR
769
A
ARG
770
n
181
ARG
770
A
ASN
771
n
182
ASN
771
A
CYS
772
n
183
CYS
772
A
LEU
773
n
184
LEU
773
A
VAL
774
n
185
VAL
774
A
GLY
775
n
186
GLY
775
A
GLU
776
n
187
GLU
776
A
ASN
777
n
188
ASN
777
A
PHE
778
n
189
PHE
778
A
THR
779
n
190
THR
779
A
ILE
780
n
191
ILE
780
A
LYS
781
n
192
LYS
781
A
ILE
782
n
193
ILE
782
A
ALA
783
n
194
ALA
783
A
ASP
784
n
195
ASP
784
A
PHE
785
n
196
PHE
785
A
GLY
786
n
197
GLY
786
A
MET
787
n
198
MET
787
A
SER
788
n
199
SER
788
A
ARG
789
n
200
ARG
789
A
ASN
790
n
201
ASN
790
A
LEU
791
n
202
LEU
791
A
TYR
792
n
203
TYR
792
A
ALA
793
n
204
ALA
793
A
GLY
794
n
205
GLY
794
A
ASP
795
n
206
ASP
795
A
TYR
796
n
207
TYR
796
A
TYR
797
n
208
TYR
797
A
ARG
798
n
209
ARG
798
A
VAL
799
n
210
VAL
799
A
GLN
800
n
211
GLN
800
A
GLY
801
n
212
GLY
801
A
ARG
802
n
213
ARG
802
A
ALA
803
n
214
ALA
803
A
VAL
804
n
215
VAL
804
A
LEU
805
n
216
LEU
805
A
PRO
806
n
217
PRO
806
A
ILE
807
n
218
ILE
807
A
ARG
808
n
219
ARG
808
A
TRP
809
n
220
TRP
809
A
MET
810
n
221
MET
810
A
ALA
811
n
222
ALA
811
A
TRP
812
n
223
TRP
812
A
GLU
813
n
224
GLU
813
A
CYS
814
n
225
CYS
814
A
ILE
815
n
226
ILE
815
A
LEU
816
n
227
LEU
816
A
MET
817
n
228
MET
817
A
GLY
818
n
229
GLY
818
A
LYS
819
n
230
LYS
819
A
PHE
820
n
231
PHE
820
A
THR
821
n
232
THR
821
A
THR
822
n
233
THR
822
A
ALA
823
n
234
ALA
823
A
SER
824
n
235
SER
824
A
ASP
825
n
236
ASP
825
A
VAL
826
n
237
VAL
826
A
TRP
827
n
238
TRP
827
A
ALA
828
n
239
ALA
828
A
PHE
829
n
240
PHE
829
A
GLY
830
n
241
GLY
830
A
VAL
831
n
242
VAL
831
A
THR
832
n
243
THR
832
A
LEU
833
n
244
LEU
833
A
TRP
834
n
245
TRP
834
A
GLU
835
n
246
GLU
835
A
VAL
836
n
247
VAL
836
A
LEU
837
n
248
LEU
837
A
MET
838
n
249
MET
838
A
LEU
839
n
250
LEU
839
A
CYS
840
n
251
CYS
840
A
ARG
841
n
252
ARG
841
A
ALA
842
n
253
ALA
842
A
GLN
843
n
254
GLN
843
A
PRO
844
n
255
PRO
844
A
PHE
845
n
256
PHE
845
A
GLY
846
n
257
GLY
846
A
GLN
847
n
258
GLN
847
A
LEU
848
n
259
LEU
848
A
THR
849
n
260
THR
849
A
ASP
850
n
261
ASP
850
A
GLU
851
n
262
GLU
851
A
GLN
852
n
263
GLN
852
A
VAL
853
n
264
VAL
853
A
ILE
854
n
265
ILE
854
A
GLU
855
n
266
GLU
855
A
ASN
856
n
267
ASN
856
A
ALA
857
n
268
ALA
857
A
GLY
858
n
269
GLY
858
A
GLU
859
n
270
GLU
859
A
PHE
860
n
271
PHE
860
A
PHE
861
n
272
PHE
861
A
ARG
862
n
273
ARG
862
A
ASP
863
n
274
ASP
863
A
GLN
864
n
275
GLN
864
A
GLY
865
n
276
GLY
865
A
ARG
866
n
277
ARG
866
A
GLN
867
n
278
GLN
867
A
VAL
868
n
279
VAL
868
A
TYR
869
n
280
TYR
869
A
LEU
870
n
281
LEU
870
A
SER
871
n
282
SER
871
A
ARG
872
n
283
ARG
872
A
PRO
873
n
284
PRO
873
A
PRO
874
n
285
PRO
874
A
ALA
875
n
286
ALA
875
A
CYS
876
n
287
CYS
876
A
PRO
877
n
288
PRO
877
A
GLN
878
n
289
GLN
878
A
GLY
879
n
290
GLY
879
A
LEU
880
n
291
LEU
880
A
TYR
881
n
292
TYR
881
A
GLU
882
n
293
GLU
882
A
LEU
883
n
294
LEU
883
A
MET
884
n
295
MET
884
A
LEU
885
n
296
LEU
885
A
ARG
886
n
297
ARG
886
A
CYS
887
n
298
CYS
887
A
TRP
888
n
299
TRP
888
A
SER
889
n
300
SER
889
A
ARG
890
n
301
ARG
890
A
GLU
891
n
302
GLU
891
A
SER
892
n
303
SER
892
A
GLU
893
n
304
GLU
893
A
GLN
894
n
305
GLN
894
A
ARG
895
n
306
ARG
895
A
PRO
896
n
307
PRO
896
A
PRO
897
n
308
PRO
897
A
PHE
898
n
309
PHE
898
A
SER
899
n
310
SER
899
A
GLN
900
n
311
GLN
900
A
LEU
901
n
312
LEU
901
A
HIS
902
n
313
HIS
902
A
ARG
903
n
314
ARG
903
A
PHE
904
n
315
PHE
904
A
LEU
905
n
316
LEU
905
A
ALA
906
n
317
ALA
906
A
GLU
907
n
318
GLU
907
A
ASP
908
n
319
ASP
908
A
ALA
909
n
320
ALA
909
A
LEU
910
n
321
LEU
910
A
ASN
911
n
322
ASN
911
A
n
323
912
A
n
324
913
A
3.2032
-1.4699
1.3620
2.3866
2.3711
5.9103
-0.3947
-0.0570
0.6799
-0.0382
0.1525
-0.3180
-0.7010
0.1670
0.2421
0.3186
0.0052
0.0108
0.0858
0.0090
0.2500
refined
26.6573
41.2209
40.3218
X-RAY DIFFRACTION
3.5014
0.2184
0.2616
2.7450
-1.3115
3.1718
0.0739
-0.1259
-0.0027
-0.0731
-0.0706
-0.1291
0.0219
-0.0084
-0.0033
0.0229
-0.0039
0.0069
0.0069
0.0034
0.0082
refined
15.1124
18.9221
30.3852
X-RAY DIFFRACTION
A
604
A
703
X-RAY DIFFRACTION
1
A
704
A
911
X-RAY DIFFRACTION
2
software_defined_assembly
PISA
1
monomeric
850
-2
14030
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
616
A
N
LEU
27
A
O
VAL
624
A
O
VAL
35
A
N
HIS
625
A
N
HIS
36
A
O
VAL
654
A
O
VAL
65
A
N
ALA
653
A
N
ALA
64
A
O
THR
701
A
O
THR
112
A
O
ILE
700
A
O
ILE
111
A
N
LEU
688
A
N
LEU
99
A
N
GLN
717
A
N
GLN
128
A
O
ILE
738
A
O
ILE
149
A
N
LEU
773
A
N
LEU
184
A
O
LYS
781
A
O
LYS
192
1
A
GLY
590
A
GLY
1
1
Y
1
A
ALA
591
A
ALA
2
1
Y
1
A
MET
592
A
MET
3
1
Y
1
A
GLY
593
A
GLY
4
1
Y
1
A
SER
594
A
SER
5
1
Y
1
A
ALA
595
A
ALA
6
1
Y
1
A
VAL
596
A
VAL
7
1
Y
1
A
GLY
597
A
GLY
8
1
Y
1
A
ASP
598
A
ASP
9
1
Y
1
A
GLY
599
A
GLY
10
1
Y
1
A
PRO
600
A
PRO
11
1
Y
1
A
PRO
601
A
PRO
12
1
Y
1
A
ARG
602
A
ARG
13
1
Y
1
A
VAL
603
A
VAL
14
1
Y
1
A
PRO
632
A
PRO
43
1
Y
1
A
GLN
633
A
GLN
44
1
Y
1
A
ASP
634
A
ASP
45
1
Y
1
A
LEU
635
A
LEU
46
1
Y
1
A
VAL
636
A
VAL
47
1
Y
1
A
SER
637
A
SER
48
1
Y
1
A
LEU
638
A
LEU
49
1
Y
1
A
ASP
639
A
ASP
50
1
Y
1
A
PHE
640
A
PHE
51
1
Y
1
A
PRO
641
A
PRO
52
1
Y
1
A
LEU
642
A
LEU
53
1
Y
1
A
ASN
643
A
ASN
54
1
Y
1
A
VAL
644
A
VAL
55
1
Y
1
A
ARG
645
A
ARG
56
1
Y
1
A
LYS
646
A
LYS
57
1
Y
1
A
GLY
647
A
GLY
58
1
Y
1
A
ALA
722
A
ALA
133
1
Y
1
A
ALA
723
A
ALA
134
1
Y
1
A
GLU
724
A
GLU
135
1
Y
1
A
GLY
725
A
GLY
136
1
Y
1
A
ALA
726
A
ALA
137
1
Y
1
A
PRO
727
A
PRO
138
1
Y
1
A
GLY
728
A
GLY
139
1
Y
1
A
ASP
729
A
ASP
140
1
Y
1
A
GLY
730
A
GLY
141
1
Y
1
A
GLN
731
A
GLN
142
1
Y
1
A
ALA
732
A
ALA
143
1
Y
1
A
ALA
733
A
ALA
144
1
Y
1
A
GLN
734
A
GLN
145
1
Y
1
A
GLY
735
A
GLY
146
1
Y
1
A
THR
912
A
THR
323
1
Y
1
A
VAL
913
A
VAL
324
1
Y
1
19.11
2.30
115.30
134.41
A
A
A
CA
CB
CG
LEU
LEU
LEU
791
791
791
N
1
-15.68
2.30
115.30
99.62
A
A
A
CA
CB
CG
LEU
LEU
LEU
837
837
837
N
1
A
GLN
693
-42.96
-97.27
1
A
ARG
765
83.70
-18.63
1
A
ASP
766
-141.77
46.28
1
A
GLU
776
50.26
143.76
1
A
ASN
777
-65.52
78.30
1
A
GLU
907
-123.95
-64.35
134.270
38.2990
5.770
-1.7700
-0.0000
0.0000
1.4700
-0.0000
0.3000
0.9460
0.9200
U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.2324
0.1873
0.1897
2.2900
52
827
14992
5.2000
99.1700
11.8020
0.1530
RANDOM
1
THROUGHOUT
0.000
0.2890
0.2160
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.2900
52
113
2394
42.93
38.67
36
0
2245
278
0.010
0.019
2314
0.004
0.026
12
1.506
1.953
3124
0.454
1.080
25
6.554
5.000
275
36.263
22.983
118
17.033
15.000
399
20.888
15.000
22
0.103
0.200
335
0.000
0.021
1774
0.002
0.051
10
1.691
4.352
1109
2.394
5.032
1205
0.2550
0.2210
2.3470
57
1090
1147
20
99.6500
2.27
52
5BVK
14992
1
6
3.1
99.7
refinement
REFMAC
5.8.0107
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
Epithelial discoidin domain-containing receptor 1 (E.C.2.7.10.1)
Fragment-based discovery of potent and selective DDR1/2 inhibitors
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
PRO
606
A
PRO
17
HELX_P
A
SER
608
A
SER
19
5
AA1
3
A
THR
662
A
THR
73
HELX_P
A
ARG
678
A
ARG
89
1
AA2
17
A
ASP
708
A
ASP
119
HELX_P
A
ALA
715
A
ALA
126
1
AA3
8
A
SER
739
A
SER
150
HELX_P
A
LEU
760
A
LEU
171
1
AA4
22
A
ALA
768
A
ALA
179
HELX_P
A
ARG
770
A
ARG
181
5
AA5
3
A
MET
787
A
MET
198
HELX_P
A
TYR
792
A
TYR
203
1
AA6
6
A
ALA
793
A
ALA
204
HELX_P
A
TYR
796
A
TYR
207
5
AA7
4
A
PRO
806
A
PRO
217
HELX_P
A
MET
810
A
MET
221
5
AA8
5
A
ALA
811
A
ALA
222
HELX_P
A
GLY
818
A
GLY
229
1
AA9
8
A
THR
821
A
THR
232
HELX_P
A
MET
838
A
MET
249
1
AB1
18
A
THR
849
A
THR
260
HELX_P
A
ASP
863
A
ASP
274
1
AB2
15
A
PRO
877
A
PRO
288
HELX_P
A
TRP
888
A
TRP
299
1
AB3
12
A
GLU
891
A
GLU
302
HELX_P
A
ARG
895
A
ARG
306
5
AB4
5
A
PRO
897
A
PRO
308
HELX_P
A
GLU
907
A
GLU
318
1
AB5
11
A
ASP
908
A
ASP
319
HELX_P
A
ASN
911
A
ASN
322
5
AB6
4
TRANSFERASE
DDR1, transferase
A
ASP
604
A
ASP
15
1
A
PHE
605
A
PHE
16
-3.28
A
ASP
695
A
ASP
106
1
A
PRO
696
A
PRO
107
6.98
A
GLU
776
A
GLU
187
1
A
ASN
777
A
ASN
188
5.70
DDR1_HUMAN
UNP
1
576
Q08345
Q08345-6
AVGDGPPRVDFPRSRLRFKEKLGEGQFGEVHLCEVDSPQDLVSLDFPLNVRKGHPLLVAVKILRPDATKNARNDFLKEVK
IMSRLKDPNIIRLLGVCVQDDPLCMITDYMENGDLNQFLSAHQLEDKAAEGAPGDGQAAQGPTISYPMLLHVAAQIASGM
RYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLW
EVLMLCRAQPFGQLTDEQVIENAGEFFRDQGRQVYLSRPPACPQGLYELMLRCWSRESEQRPPFSQLHRFLAEDALNTV
576
894
5BVK
595
913
Q08345
A
1
6
324
1
expression tag
GLY
590
5BVK
A
Q08345
UNP
1
1
expression tag
ALA
591
5BVK
A
Q08345
UNP
2
1
expression tag
MET
592
5BVK
A
Q08345
UNP
3
1
expression tag
GLY
593
5BVK
A
Q08345
UNP
4
1
expression tag
SER
594
5BVK
A
Q08345
UNP
5
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
LEU
610
A
LEU
21
A
GLU
618
A
GLU
29
A
GLY
622
A
GLY
33
A
VAL
629
A
VAL
40
A
LEU
650
A
LEU
61
A
LEU
657
A
LEU
68
A
CYS
698
A
CYS
109
A
ASP
702
A
ASP
113
A
LEU
687
A
LEU
98
A
CYS
691
A
CYS
102
A
GLN
717
A
GLN
128
A
LEU
718
A
LEU
129
A
THR
737
A
THR
148
A
ILE
738
A
ILE
149
A
CYS
772
A
CYS
183
A
VAL
774
A
VAL
185
A
ILE
780
A
ILE
191
A
ILE
782
A
ILE
193
binding site for residue IOD A 1002
A
IOD
1002
Software
1
binding site for residue IOD A 1003
A
IOD
1003
Software
4
binding site for residue IOD A 1004
A
IOD
1004
Software
1
binding site for residue IOD A 1006
A
IOD
1006
Software
3
binding site for residue 4VC A 1007
A
4VC
1007
Software
7
A
LEU
883
A
LEU
294
1
1_555
A
GLN
620
A
GLN
31
4
1_555
A
PHE
621
A
PHE
32
4
1_555
A
GLY
622
A
GLY
33
4
1_555
A
LYS
655
A
LYS
66
4
1_555
A
HIS
902
A
HIS
313
1
1_555
A
LYS
655
A
LYS
66
3
1_555
A
GLY
786
A
GLY
197
3
1_555
A
MET
787
A
MET
198
3
1_555
A
GLU
672
A
GLU
83
7
1_555
A
MET
676
A
MET
87
7
1_555
A
LEU
679
A
LEU
90
7
1_555
A
ILE
685
A
ILE
96
7
1_555
A
THR
701
A
THR
112
7
1_555
A
ALA
783
A
ALA
194
7
1_555
A
ASP
784
A
ASP
195
7
1_555
19
P 21 21 21