data_5BZ9 # _entry.id 5BZ9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5BZ9 pdb_00005bz9 10.2210/pdb5bz9/pdb WWPDB D_1000210819 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5BXW unspecified PDB . 5BZ7 unspecified PDB . 5BZY unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5BZ9 _pdbx_database_status.recvd_initial_deposition_date 2015-06-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saoji, M.' 1 'Paukstelis, P.J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_id_ASTM ABCRE6 _citation.journal_id_CSD ? _citation.journal_id_ISSN 1399-0047 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 71 _citation.language ? _citation.page_first 2471 _citation.page_last 2478 _citation.title 'Sequence-dependent structural changes in a self-assembling DNA oligonucleotide.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S1399004715019598 _citation.pdbx_database_id_PubMed 26627654 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Saoji, M.' 1 ? primary 'Paukstelis, P.J.' 2 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5BZ9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 25.989 _cell.length_a_esd ? _cell.length_b 25.989 _cell.length_b_esd ? _cell.length_c 121.531 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(GGAAACGTTGGAGA) ; 4393.879 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DA)(DA)(DA)(DC)(DG)(DT)(DT)(DG)(DG)(DA)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can GGAAACGTTGGAGA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DA n 1 4 DA n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DA n 1 13 DG n 1 14 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5BZ9 _struct_ref.pdbx_db_accession 5BZ9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5BZ9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5BZ9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 13 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5BZ9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;120mM Magnesium Formate 50mM Lithium Chloride 10% MPD ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 77.15 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-29 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979200 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979200 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5BZ9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 22.51 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3035 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.6 _reflns.pdbx_Rmerge_I_obs 0.138 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.17 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 97.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.244 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.04 _refine.aniso_B[1][2] 0.02 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.04 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.14 _refine.B_iso_max ? _refine.B_iso_mean 53.965 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5BZ9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.10 _refine.ls_d_res_low 40.51 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2716 _refine.ls_number_reflns_R_free 301 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.81 _refine.ls_percent_reflns_R_free 10.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.27493 _refine.ls_R_factor_R_free 0.31152 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.27086 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5BXW _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.272 _refine.pdbx_overall_ESU_R_Free 0.232 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii 0.70 _refine.pdbx_solvent_shrinkage_radii 0.70 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 10.375 _refine.overall_SU_ML 0.241 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 293 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 308 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 40.51 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.011 331 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 157 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.406 1.146 511 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.352 3.000 371 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.177 0.200 42 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 178 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 74 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.651 5.520 329 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.647 5.516 330 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.456 8.317 510 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.662 53.940 490 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.663 53.904 490 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.156 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_R_work 202 _refine_ls_shell.percent_reflns_obs 96.25 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.416 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.454 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5BZ9 _struct.title 'X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5BZ9 _struct_keywords.text 'Self-assembly, DNA crystal structure, Non-canonical base pairs, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 11 N7 ? ? A DG 1 A DG 11 6_767 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 11 O6 ? ? A DG 1 A DG 11 6_767 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog3 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DG 10 N3 ? ? A DA 3 A DG 10 6_767 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog4 hydrog ? ? A DA 3 N7 ? ? ? 1_555 A DG 10 N2 ? ? A DA 3 A DG 10 6_767 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog5 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 9 N3 ? ? A DA 4 A DT 9 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 9 O4 ? ? A DA 4 A DT 9 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 5 A DT 8 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 5 A DT 8 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 6 A DG 7 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 6 A DG 7 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 6 A DG 7 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 7 A DC 6 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 7 A DC 6 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 7 A DC 6 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 8 A DA 5 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 8 A DA 5 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 9 A DA 4 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 9 A DA 4 6_767 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DA 3 N7 ? ? A DG 10 A DA 3 6_767 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? A DG 10 N3 ? ? ? 1_555 A DA 3 N6 ? ? A DG 10 A DA 3 6_767 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A DG 11 N7 ? ? ? 1_555 A DG 1 N1 ? ? A DG 11 A DG 1 6_767 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog22 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DG 1 N2 ? ? A DG 11 A DG 1 6_767 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'binding site for residue MG A 101' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id HOH _struct_site_gen.label_asym_id D _struct_site_gen.label_seq_id . _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id HOH _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 211 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 6_667 _struct_site_gen.details ? # _atom_sites.entry_id 5BZ9 _atom_sites.fract_transf_matrix[1][1] 0.038478 _atom_sites.fract_transf_matrix[1][2] 0.022215 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.044430 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008228 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 27.298 -5.693 162.733 1.00 51.20 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 25.888 -5.346 162.872 1.00 51.43 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 25.541 -4.121 162.053 1.00 49.55 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 26.485 -3.023 162.064 1.00 47.40 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 25.010 -4.233 160.629 1.00 50.33 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 23.869 -3.390 160.431 1.00 54.19 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 26.179 -3.706 159.819 1.00 48.98 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 26.750 -2.618 160.726 1.00 46.11 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 28.187 -2.420 160.603 1.00 43.41 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 29.155 -3.391 160.652 1.00 43.77 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 30.364 -2.916 160.528 1.00 43.49 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 30.184 -1.546 160.409 1.00 42.65 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 31.135 -0.506 160.252 1.00 43.15 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 32.370 -0.592 160.183 1.00 46.18 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 30.519 0.737 160.162 1.00 40.89 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 29.167 0.953 160.235 1.00 42.05 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 28.770 2.222 160.156 1.00 44.19 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 28.269 -0.007 160.366 1.00 43.74 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 28.845 -1.224 160.452 1.00 43.34 ? 1 DG A C4 1 ATOM 20 P P . DG A 1 2 ? 22.915 -3.607 159.151 1.00 56.25 ? 2 DG A P 1 ATOM 21 O OP1 . DG A 1 2 ? 21.543 -3.254 159.555 1.00 56.78 ? 2 DG A OP1 1 ATOM 22 O OP2 . DG A 1 2 ? 23.192 -4.965 158.596 1.00 58.55 ? 2 DG A OP2 1 ATOM 23 O "O5'" . DG A 1 2 ? 23.481 -2.595 158.059 1.00 55.62 ? 2 DG A "O5'" 1 ATOM 24 C "C5'" . DG A 1 2 ? 23.888 -1.253 158.373 1.00 53.16 ? 2 DG A "C5'" 1 ATOM 25 C "C4'" . DG A 1 2 ? 24.723 -0.689 157.248 1.00 50.78 ? 2 DG A "C4'" 1 ATOM 26 O "O4'" . DG A 1 2 ? 26.084 -1.163 157.371 1.00 50.85 ? 2 DG A "O4'" 1 ATOM 27 C "C3'" . DG A 1 2 ? 24.285 -1.089 155.840 1.00 51.57 ? 2 DG A "C3'" 1 ATOM 28 O "O3'" . DG A 1 2 ? 24.648 -0.074 154.898 1.00 52.95 ? 2 DG A "O3'" 1 ATOM 29 C "C2'" . DG A 1 2 ? 25.131 -2.318 155.570 1.00 49.81 ? 2 DG A "C2'" 1 ATOM 30 C "C1'" . DG A 1 2 ? 26.441 -1.884 156.194 1.00 48.31 ? 2 DG A "C1'" 1 ATOM 31 N N9 . DG A 1 2 ? 27.386 -2.927 156.579 1.00 45.01 ? 2 DG A N9 1 ATOM 32 C C8 . DG A 1 2 ? 27.157 -4.257 156.846 1.00 44.95 ? 2 DG A C8 1 ATOM 33 N N7 . DG A 1 2 ? 28.237 -4.899 157.203 1.00 45.31 ? 2 DG A N7 1 ATOM 34 C C5 . DG A 1 2 ? 29.237 -3.938 157.156 1.00 41.14 ? 2 DG A C5 1 ATOM 35 C C6 . DG A 1 2 ? 30.621 -4.032 157.455 1.00 42.23 ? 2 DG A C6 1 ATOM 36 O O6 . DG A 1 2 ? 31.274 -5.029 157.803 1.00 39.62 ? 2 DG A O6 1 ATOM 37 N N1 . DG A 1 2 ? 31.259 -2.804 157.302 1.00 40.13 ? 2 DG A N1 1 ATOM 38 C C2 . DG A 1 2 ? 30.643 -1.639 156.914 1.00 40.64 ? 2 DG A C2 1 ATOM 39 N N2 . DG A 1 2 ? 31.421 -0.555 156.811 1.00 37.84 ? 2 DG A N2 1 ATOM 40 N N3 . DG A 1 2 ? 29.355 -1.537 156.659 1.00 39.45 ? 2 DG A N3 1 ATOM 41 C C4 . DG A 1 2 ? 28.721 -2.715 156.787 1.00 41.16 ? 2 DG A C4 1 ATOM 42 P P . DA A 1 3 ? 23.519 0.821 154.195 1.00 56.59 ? 3 DA A P 1 ATOM 43 O OP1 . DA A 1 3 ? 22.474 1.089 155.210 1.00 59.48 ? 3 DA A OP1 1 ATOM 44 O OP2 . DA A 1 3 ? 23.151 0.179 152.911 1.00 57.95 ? 3 DA A OP2 1 ATOM 45 O "O5'" . DA A 1 3 ? 24.305 2.151 153.817 1.00 52.78 ? 3 DA A "O5'" 1 ATOM 46 C "C5'" . DA A 1 3 ? 24.405 3.214 154.767 1.00 52.59 ? 3 DA A "C5'" 1 ATOM 47 C "C4'" . DA A 1 3 ? 25.513 4.156 154.369 1.00 52.69 ? 3 DA A "C4'" 1 ATOM 48 O "O4'" . DA A 1 3 ? 26.770 3.471 154.514 1.00 51.31 ? 3 DA A "O4'" 1 ATOM 49 C "C3'" . DA A 1 3 ? 25.485 4.635 152.921 1.00 55.34 ? 3 DA A "C3'" 1 ATOM 50 O "O3'" . DA A 1 3 ? 26.102 5.919 152.814 1.00 59.45 ? 3 DA A "O3'" 1 ATOM 51 C "C2'" . DA A 1 3 ? 26.403 3.660 152.218 1.00 53.25 ? 3 DA A "C2'" 1 ATOM 52 C "C1'" . DA A 1 3 ? 27.462 3.458 153.277 1.00 50.16 ? 3 DA A "C1'" 1 ATOM 53 N N9 . DA A 1 3 ? 28.167 2.184 153.183 1.00 45.66 ? 3 DA A N9 1 ATOM 54 C C8 . DA A 1 3 ? 27.678 0.928 153.441 1.00 44.33 ? 3 DA A C8 1 ATOM 55 N N7 . DA A 1 3 ? 28.568 -0.023 153.299 1.00 44.80 ? 3 DA A N7 1 ATOM 56 C C5 . DA A 1 3 ? 29.721 0.654 152.925 1.00 43.60 ? 3 DA A C5 1 ATOM 57 C C6 . DA A 1 3 ? 31.017 0.214 152.619 1.00 43.38 ? 3 DA A C6 1 ATOM 58 N N6 . DA A 1 3 ? 31.384 -1.069 152.630 1.00 46.92 ? 3 DA A N6 1 ATOM 59 N N1 . DA A 1 3 ? 31.942 1.149 152.311 1.00 44.89 ? 3 DA A N1 1 ATOM 60 C C2 . DA A 1 3 ? 31.570 2.435 152.283 1.00 45.68 ? 3 DA A C2 1 ATOM 61 N N3 . DA A 1 3 ? 30.376 2.970 152.530 1.00 44.61 ? 3 DA A N3 1 ATOM 62 C C4 . DA A 1 3 ? 29.490 2.015 152.863 1.00 44.49 ? 3 DA A C4 1 ATOM 63 P P . DA A 1 4 ? 25.720 6.877 151.594 1.00 64.96 ? 4 DA A P 1 ATOM 64 O OP1 . DA A 1 4 ? 25.954 8.280 152.034 1.00 65.31 ? 4 DA A OP1 1 ATOM 65 O OP2 . DA A 1 4 ? 24.382 6.449 151.073 1.00 63.99 ? 4 DA A OP2 1 ATOM 66 O "O5'" . DA A 1 4 ? 26.848 6.563 150.516 1.00 61.91 ? 4 DA A "O5'" 1 ATOM 67 C "C5'" . DA A 1 4 ? 28.232 6.789 150.806 1.00 58.49 ? 4 DA A "C5'" 1 ATOM 68 C "C4'" . DA A 1 4 ? 29.093 6.190 149.718 1.00 57.72 ? 4 DA A "C4'" 1 ATOM 69 O "O4'" . DA A 1 4 ? 29.132 4.748 149.839 1.00 58.39 ? 4 DA A "O4'" 1 ATOM 70 C "C3'" . DA A 1 4 ? 28.633 6.451 148.286 1.00 58.78 ? 4 DA A "C3'" 1 ATOM 71 O "O3'" . DA A 1 4 ? 29.806 6.343 147.496 1.00 62.94 ? 4 DA A "O3'" 1 ATOM 72 C "C2'" . DA A 1 4 ? 27.814 5.220 147.956 1.00 57.65 ? 4 DA A "C2'" 1 ATOM 73 C "C1'" . DA A 1 4 ? 28.651 4.154 148.634 1.00 55.15 ? 4 DA A "C1'" 1 ATOM 74 N N9 . DA A 1 4 ? 27.940 2.935 148.993 1.00 52.02 ? 4 DA A N9 1 ATOM 75 C C8 . DA A 1 4 ? 26.594 2.734 149.177 1.00 53.05 ? 4 DA A C8 1 ATOM 76 N N7 . DA A 1 4 ? 26.286 1.507 149.515 1.00 51.89 ? 4 DA A N7 1 ATOM 77 C C5 . DA A 1 4 ? 27.509 0.852 149.545 1.00 52.26 ? 4 DA A C5 1 ATOM 78 C C6 . DA A 1 4 ? 27.863 -0.482 149.822 1.00 52.51 ? 4 DA A C6 1 ATOM 79 N N6 . DA A 1 4 ? 26.983 -1.428 150.146 1.00 54.86 ? 4 DA A N6 1 ATOM 80 N N1 . DA A 1 4 ? 29.172 -0.812 149.758 1.00 51.77 ? 4 DA A N1 1 ATOM 81 C C2 . DA A 1 4 ? 30.058 0.142 149.441 1.00 53.40 ? 4 DA A C2 1 ATOM 82 N N3 . DA A 1 4 ? 29.846 1.428 149.156 1.00 53.40 ? 4 DA A N3 1 ATOM 83 C C4 . DA A 1 4 ? 28.536 1.721 149.229 1.00 51.92 ? 4 DA A C4 1 ATOM 84 P P . DA A 1 5 ? 29.979 7.180 146.163 1.00 66.11 ? 5 DA A P 1 ATOM 85 O OP1 . DA A 1 5 ? 30.171 8.602 146.542 1.00 68.70 ? 5 DA A OP1 1 ATOM 86 O OP2 . DA A 1 5 ? 28.896 6.793 145.213 1.00 62.59 ? 5 DA A OP2 1 ATOM 87 O "O5'" . DA A 1 5 ? 31.375 6.634 145.630 1.00 64.65 ? 5 DA A "O5'" 1 ATOM 88 C "C5'" . DA A 1 5 ? 32.423 6.258 146.552 1.00 62.93 ? 5 DA A "C5'" 1 ATOM 89 C "C4'" . DA A 1 5 ? 33.108 4.993 146.088 1.00 60.76 ? 5 DA A "C4'" 1 ATOM 90 O "O4'" . DA A 1 5 ? 32.320 3.832 146.436 1.00 58.18 ? 5 DA A "O4'" 1 ATOM 91 C "C3'" . DA A 1 5 ? 33.327 4.901 144.580 1.00 62.45 ? 5 DA A "C3'" 1 ATOM 92 O "O3'" . DA A 1 5 ? 34.582 4.267 144.368 1.00 66.65 ? 5 DA A "O3'" 1 ATOM 93 C "C2'" . DA A 1 5 ? 32.205 3.993 144.112 1.00 59.15 ? 5 DA A "C2'" 1 ATOM 94 C "C1'" . DA A 1 5 ? 32.128 3.035 145.272 1.00 57.07 ? 5 DA A "C1'" 1 ATOM 95 N N9 . DA A 1 5 ? 30.862 2.333 145.427 1.00 54.36 ? 5 DA A N9 1 ATOM 96 C C8 . DA A 1 5 ? 29.580 2.801 145.280 1.00 52.53 ? 5 DA A C8 1 ATOM 97 N N7 . DA A 1 5 ? 28.659 1.908 145.549 1.00 51.80 ? 5 DA A N7 1 ATOM 98 C C5 . DA A 1 5 ? 29.385 0.783 145.917 1.00 53.48 ? 5 DA A C5 1 ATOM 99 C C6 . DA A 1 5 ? 28.996 -0.504 146.325 1.00 53.68 ? 5 DA A C6 1 ATOM 100 N N6 . DA A 1 5 ? 27.725 -0.893 146.436 1.00 57.12 ? 5 DA A N6 1 ATOM 101 N N1 . DA A 1 5 ? 29.971 -1.393 146.614 1.00 54.33 ? 5 DA A N1 1 ATOM 102 C C2 . DA A 1 5 ? 31.246 -1.007 146.495 1.00 53.68 ? 5 DA A C2 1 ATOM 103 N N3 . DA A 1 5 ? 31.736 0.175 146.131 1.00 53.80 ? 5 DA A N3 1 ATOM 104 C C4 . DA A 1 5 ? 30.742 1.035 145.856 1.00 53.01 ? 5 DA A C4 1 ATOM 105 P P . DC A 1 6 ? 35.547 4.766 143.216 1.00 69.96 ? 6 DC A P 1 ATOM 106 O OP1 . DC A 1 6 ? 36.726 5.404 143.855 1.00 73.22 ? 6 DC A OP1 1 ATOM 107 O OP2 . DC A 1 6 ? 34.738 5.517 142.218 1.00 70.33 ? 6 DC A OP2 1 ATOM 108 O "O5'" . DC A 1 6 ? 35.998 3.393 142.561 1.00 69.82 ? 6 DC A "O5'" 1 ATOM 109 C "C5'" . DC A 1 6 ? 35.009 2.592 141.909 1.00 69.41 ? 6 DC A "C5'" 1 ATOM 110 C "C4'" . DC A 1 6 ? 35.036 1.175 142.428 1.00 67.30 ? 6 DC A "C4'" 1 ATOM 111 O "O4'" . DC A 1 6 ? 33.780 0.916 143.102 1.00 64.97 ? 6 DC A "O4'" 1 ATOM 112 C "C3'" . DC A 1 6 ? 35.140 0.145 141.301 1.00 69.45 ? 6 DC A "C3'" 1 ATOM 113 O "O3'" . DC A 1 6 ? 36.120 -0.895 141.465 1.00 76.15 ? 6 DC A "O3'" 1 ATOM 114 C "C2'" . DC A 1 6 ? 33.731 -0.400 141.187 1.00 65.96 ? 6 DC A "C2'" 1 ATOM 115 C "C1'" . DC A 1 6 ? 33.185 -0.255 142.576 1.00 61.40 ? 6 DC A "C1'" 1 ATOM 116 N N1 . DC A 1 6 ? 31.732 -0.078 142.585 1.00 56.40 ? 6 DC A N1 1 ATOM 117 C C2 . DC A 1 6 ? 30.929 -1.117 143.056 1.00 54.20 ? 6 DC A C2 1 ATOM 118 O O2 . DC A 1 6 ? 31.469 -2.149 143.471 1.00 56.68 ? 6 DC A O2 1 ATOM 119 N N3 . DC A 1 6 ? 29.588 -0.967 143.060 1.00 53.09 ? 6 DC A N3 1 ATOM 120 C C4 . DC A 1 6 ? 29.044 0.158 142.593 1.00 54.53 ? 6 DC A C4 1 ATOM 121 N N4 . DC A 1 6 ? 27.717 0.266 142.616 1.00 57.35 ? 6 DC A N4 1 ATOM 122 C C5 . DC A 1 6 ? 29.839 1.227 142.091 1.00 55.00 ? 6 DC A C5 1 ATOM 123 C C6 . DC A 1 6 ? 31.166 1.064 142.094 1.00 56.64 ? 6 DC A C6 1 ATOM 124 P P . DG A 1 7 ? 36.719 -1.647 140.144 1.00 81.85 ? 7 DG A P 1 ATOM 125 O OP1 . DG A 1 7 ? 37.287 -2.958 140.568 1.00 80.28 ? 7 DG A OP1 1 ATOM 126 O OP2 . DG A 1 7 ? 37.550 -0.671 139.375 1.00 79.50 ? 7 DG A OP2 1 ATOM 127 O "O5'" . DG A 1 7 ? 35.427 -1.908 139.253 1.00 81.04 ? 7 DG A "O5'" 1 ATOM 128 C "C5'" . DG A 1 7 ? 35.278 -3.098 138.465 1.00 81.95 ? 7 DG A "C5'" 1 ATOM 129 C "C4'" . DG A 1 7 ? 35.118 -4.319 139.341 1.00 80.70 ? 7 DG A "C4'" 1 ATOM 130 O "O4'" . DG A 1 7 ? 34.136 -4.113 140.383 1.00 77.22 ? 7 DG A "O4'" 1 ATOM 131 C "C3'" . DG A 1 7 ? 34.655 -5.541 138.558 1.00 81.81 ? 7 DG A "C3'" 1 ATOM 132 O "O3'" . DG A 1 7 ? 35.400 -6.700 138.918 1.00 86.89 ? 7 DG A "O3'" 1 ATOM 133 C "C2'" . DG A 1 7 ? 33.168 -5.647 138.854 1.00 78.59 ? 7 DG A "C2'" 1 ATOM 134 C "C1'" . DG A 1 7 ? 32.911 -4.760 140.058 1.00 73.78 ? 7 DG A "C1'" 1 ATOM 135 N N9 . DG A 1 7 ? 31.895 -3.733 139.839 1.00 66.64 ? 7 DG A N9 1 ATOM 136 C C8 . DG A 1 7 ? 32.096 -2.418 139.500 1.00 63.65 ? 7 DG A C8 1 ATOM 137 N N7 . DG A 1 7 ? 30.987 -1.740 139.397 1.00 61.95 ? 7 DG A N7 1 ATOM 138 C C5 . DG A 1 7 ? 29.992 -2.666 139.673 1.00 59.69 ? 7 DG A C5 1 ATOM 139 C C6 . DG A 1 7 ? 28.585 -2.515 139.710 1.00 57.23 ? 7 DG A C6 1 ATOM 140 O O6 . DG A 1 7 ? 27.916 -1.498 139.510 1.00 60.70 ? 7 DG A O6 1 ATOM 141 N N1 . DG A 1 7 ? 27.949 -3.711 140.019 1.00 55.62 ? 7 DG A N1 1 ATOM 142 C C2 . DG A 1 7 ? 28.587 -4.901 140.263 1.00 57.13 ? 7 DG A C2 1 ATOM 143 N N2 . DG A 1 7 ? 27.802 -5.946 140.559 1.00 61.14 ? 7 DG A N2 1 ATOM 144 N N3 . DG A 1 7 ? 29.901 -5.052 140.246 1.00 62.11 ? 7 DG A N3 1 ATOM 145 C C4 . DG A 1 7 ? 30.536 -3.902 139.941 1.00 60.57 ? 7 DG A C4 1 ATOM 146 P P . DT A 1 8 ? 35.592 -7.845 137.838 1.00 89.51 ? 8 DT A P 1 ATOM 147 O OP1 . DT A 1 8 ? 36.526 -8.853 138.397 1.00 97.58 ? 8 DT A OP1 1 ATOM 148 O OP2 . DT A 1 8 ? 35.903 -7.194 136.536 1.00 87.13 ? 8 DT A OP2 1 ATOM 149 O "O5'" . DT A 1 8 ? 34.153 -8.521 137.803 1.00 85.59 ? 8 DT A "O5'" 1 ATOM 150 C "C5'" . DT A 1 8 ? 33.327 -8.395 136.641 1.00 84.02 ? 8 DT A "C5'" 1 ATOM 151 C "C4'" . DT A 1 8 ? 31.998 -9.067 136.885 1.00 81.85 ? 8 DT A "C4'" 1 ATOM 152 O "O4'" . DT A 1 8 ? 31.192 -8.239 137.760 1.00 76.65 ? 8 DT A "O4'" 1 ATOM 153 C "C3'" . DT A 1 8 ? 31.170 -9.263 135.618 1.00 81.07 ? 8 DT A "C3'" 1 ATOM 154 O "O3'" . DT A 1 8 ? 31.496 -10.481 134.914 1.00 81.45 ? 8 DT A "O3'" 1 ATOM 155 C "C2'" . DT A 1 8 ? 29.745 -9.126 136.125 1.00 79.42 ? 8 DT A "C2'" 1 ATOM 156 C "C1'" . DT A 1 8 ? 29.864 -8.129 137.258 1.00 75.21 ? 8 DT A "C1'" 1 ATOM 157 N N1 . DT A 1 8 ? 29.611 -6.713 136.890 1.00 69.78 ? 8 DT A N1 1 ATOM 158 C C2 . DT A 1 8 ? 28.321 -6.246 137.010 1.00 65.18 ? 8 DT A C2 1 ATOM 159 O O2 . DT A 1 8 ? 27.393 -6.945 137.379 1.00 64.39 ? 8 DT A O2 1 ATOM 160 N N3 . DT A 1 8 ? 28.158 -4.922 136.685 1.00 66.98 ? 8 DT A N3 1 ATOM 161 C C4 . DT A 1 8 ? 29.134 -4.039 136.258 1.00 69.09 ? 8 DT A C4 1 ATOM 162 O O4 . DT A 1 8 ? 28.838 -2.874 135.998 1.00 66.45 ? 8 DT A O4 1 ATOM 163 C C5 . DT A 1 8 ? 30.462 -4.600 136.141 1.00 69.99 ? 8 DT A C5 1 ATOM 164 C C7 . DT A 1 8 ? 31.582 -3.724 135.673 1.00 70.51 ? 8 DT A C7 1 ATOM 165 C C6 . DT A 1 8 ? 30.630 -5.892 136.455 1.00 69.93 ? 8 DT A C6 1 ATOM 166 P P . DT A 1 9 ? 30.702 -11.851 135.218 1.00 81.43 ? 9 DT A P 1 ATOM 167 O OP1 . DT A 1 9 ? 30.567 -11.990 136.697 1.00 81.03 ? 9 DT A OP1 1 ATOM 168 O OP2 . DT A 1 9 ? 31.341 -12.937 134.432 1.00 86.18 ? 9 DT A OP2 1 ATOM 169 O "O5'" . DT A 1 9 ? 29.272 -11.604 134.553 1.00 75.14 ? 9 DT A "O5'" 1 ATOM 170 C "C5'" . DT A 1 9 ? 28.037 -11.923 135.243 1.00 66.82 ? 9 DT A "C5'" 1 ATOM 171 C "C4'" . DT A 1 9 ? 26.870 -11.217 134.589 1.00 60.15 ? 9 DT A "C4'" 1 ATOM 172 O "O4'" . DT A 1 9 ? 27.001 -9.779 134.727 1.00 57.91 ? 9 DT A "O4'" 1 ATOM 173 C "C3'" . DT A 1 9 ? 26.738 -11.485 133.086 1.00 56.50 ? 9 DT A "C3'" 1 ATOM 174 O "O3'" . DT A 1 9 ? 25.382 -11.842 132.813 1.00 55.10 ? 9 DT A "O3'" 1 ATOM 175 C "C2'" . DT A 1 9 ? 27.187 -10.179 132.450 1.00 54.63 ? 9 DT A "C2'" 1 ATOM 176 C "C1'" . DT A 1 9 ? 26.683 -9.189 133.476 1.00 53.71 ? 9 DT A "C1'" 1 ATOM 177 N N1 . DT A 1 9 ? 27.250 -7.817 133.435 1.00 50.93 ? 9 DT A N1 1 ATOM 178 C C2 . DT A 1 9 ? 26.406 -6.760 133.706 1.00 48.50 ? 9 DT A C2 1 ATOM 179 O O2 . DT A 1 9 ? 25.238 -6.903 134.019 1.00 49.63 ? 9 DT A O2 1 ATOM 180 N N3 . DT A 1 9 ? 26.992 -5.523 133.627 1.00 49.24 ? 9 DT A N3 1 ATOM 181 C C4 . DT A 1 9 ? 28.302 -5.241 133.299 1.00 48.85 ? 9 DT A C4 1 ATOM 182 O O4 . DT A 1 9 ? 28.684 -4.075 133.259 1.00 51.89 ? 9 DT A O4 1 ATOM 183 C C5 . DT A 1 9 ? 29.128 -6.394 133.014 1.00 48.70 ? 9 DT A C5 1 ATOM 184 C C7 . DT A 1 9 ? 30.564 -6.184 132.651 1.00 49.62 ? 9 DT A C7 1 ATOM 185 C C6 . DT A 1 9 ? 28.564 -7.606 133.081 1.00 47.92 ? 9 DT A C6 1 ATOM 186 P P . DG A 1 10 ? 24.972 -12.446 131.394 1.00 55.48 ? 10 DG A P 1 ATOM 187 O OP1 . DG A 1 10 ? 23.734 -13.224 131.576 1.00 53.66 ? 10 DG A OP1 1 ATOM 188 O OP2 . DG A 1 10 ? 26.171 -13.028 130.758 1.00 51.50 ? 10 DG A OP2 1 ATOM 189 O "O5'" . DG A 1 10 ? 24.585 -11.151 130.561 1.00 52.09 ? 10 DG A "O5'" 1 ATOM 190 C "C5'" . DG A 1 10 ? 23.583 -10.265 131.083 1.00 48.62 ? 10 DG A "C5'" 1 ATOM 191 C "C4'" . DG A 1 10 ? 23.623 -8.945 130.355 1.00 43.91 ? 10 DG A "C4'" 1 ATOM 192 O "O4'" . DG A 1 10 ? 24.920 -8.323 130.534 1.00 42.75 ? 10 DG A "O4'" 1 ATOM 193 C "C3'" . DG A 1 10 ? 23.418 -9.063 128.845 1.00 43.26 ? 10 DG A "C3'" 1 ATOM 194 O "O3'" . DG A 1 10 ? 22.663 -7.943 128.384 1.00 44.68 ? 10 DG A "O3'" 1 ATOM 195 C "C2'" . DG A 1 10 ? 24.820 -8.913 128.304 1.00 42.74 ? 10 DG A "C2'" 1 ATOM 196 C "C1'" . DG A 1 10 ? 25.341 -7.876 129.264 1.00 41.76 ? 10 DG A "C1'" 1 ATOM 197 N N9 . DG A 1 10 ? 26.785 -7.717 129.274 1.00 40.70 ? 10 DG A N9 1 ATOM 198 C C8 . DG A 1 10 ? 27.720 -8.655 128.910 1.00 42.60 ? 10 DG A C8 1 ATOM 199 N N7 . DG A 1 10 ? 28.942 -8.199 128.947 1.00 40.40 ? 10 DG A N7 1 ATOM 200 C C5 . DG A 1 10 ? 28.803 -6.876 129.338 1.00 41.88 ? 10 DG A C5 1 ATOM 201 C C6 . DG A 1 10 ? 29.782 -5.877 129.543 1.00 43.62 ? 10 DG A C6 1 ATOM 202 O O6 . DG A 1 10 ? 31.011 -5.964 129.416 1.00 45.91 ? 10 DG A O6 1 ATOM 203 N N1 . DG A 1 10 ? 29.207 -4.673 129.935 1.00 42.31 ? 10 DG A N1 1 ATOM 204 C C2 . DG A 1 10 ? 27.865 -4.455 130.092 1.00 40.25 ? 10 DG A C2 1 ATOM 205 N N2 . DG A 1 10 ? 27.511 -3.227 130.475 1.00 41.46 ? 10 DG A N2 1 ATOM 206 N N3 . DG A 1 10 ? 26.940 -5.377 129.899 1.00 40.44 ? 10 DG A N3 1 ATOM 207 C C4 . DG A 1 10 ? 27.477 -6.558 129.525 1.00 40.36 ? 10 DG A C4 1 ATOM 208 P P . DG A 1 11 ? 21.617 -8.099 127.228 1.00 44.50 ? 11 DG A P 1 ATOM 209 O OP1 . DG A 1 11 ? 20.816 -9.322 127.482 1.00 44.92 ? 11 DG A OP1 1 ATOM 210 O OP2 . DG A 1 11 ? 22.332 -7.929 125.937 1.00 42.99 ? 11 DG A OP2 1 ATOM 211 O "O5'" . DG A 1 11 ? 20.706 -6.809 127.464 1.00 47.48 ? 11 DG A "O5'" 1 ATOM 212 C "C5'" . DG A 1 11 ? 19.965 -6.633 128.680 1.00 47.96 ? 11 DG A "C5'" 1 ATOM 213 C "C4'" . DG A 1 11 ? 18.503 -6.420 128.364 1.00 49.99 ? 11 DG A "C4'" 1 ATOM 214 O "O4'" . DG A 1 11 ? 18.361 -5.166 127.666 1.00 47.67 ? 11 DG A "O4'" 1 ATOM 215 C "C3'" . DG A 1 11 ? 17.860 -7.455 127.445 1.00 51.47 ? 11 DG A "C3'" 1 ATOM 216 O "O3'" . DG A 1 11 ? 16.470 -7.508 127.758 1.00 59.23 ? 11 DG A "O3'" 1 ATOM 217 C "C2'" . DG A 1 11 ? 18.085 -6.863 126.068 1.00 48.10 ? 11 DG A "C2'" 1 ATOM 218 C "C1'" . DG A 1 11 ? 17.922 -5.388 126.336 1.00 44.48 ? 11 DG A "C1'" 1 ATOM 219 N N9 . DG A 1 11 ? 18.672 -4.484 125.486 1.00 40.53 ? 11 DG A N9 1 ATOM 220 C C8 . DG A 1 11 ? 19.975 -4.585 125.069 1.00 39.49 ? 11 DG A C8 1 ATOM 221 N N7 . DG A 1 11 ? 20.374 -3.548 124.385 1.00 40.92 ? 11 DG A N7 1 ATOM 222 C C5 . DG A 1 11 ? 19.270 -2.706 124.363 1.00 40.74 ? 11 DG A C5 1 ATOM 223 C C6 . DG A 1 11 ? 19.089 -1.428 123.761 1.00 40.55 ? 11 DG A C6 1 ATOM 224 O O6 . DG A 1 11 ? 19.891 -0.766 123.089 1.00 40.25 ? 11 DG A O6 1 ATOM 225 N N1 . DG A 1 11 ? 17.814 -0.932 123.994 1.00 41.65 ? 11 DG A N1 1 ATOM 226 C C2 . DG A 1 11 ? 16.834 -1.580 124.699 1.00 43.24 ? 11 DG A C2 1 ATOM 227 N N2 . DG A 1 11 ? 15.668 -0.941 124.811 1.00 46.33 ? 11 DG A N2 1 ATOM 228 N N3 . DG A 1 11 ? 16.992 -2.758 125.274 1.00 42.45 ? 11 DG A N3 1 ATOM 229 C C4 . DG A 1 11 ? 18.218 -3.268 125.050 1.00 41.45 ? 11 DG A C4 1 ATOM 230 P P . DA A 1 12 ? 15.499 -8.532 127.017 1.00 66.08 ? 12 DA A P 1 ATOM 231 O OP1 . DA A 1 12 ? 14.703 -9.222 128.061 1.00 67.19 ? 12 DA A OP1 1 ATOM 232 O OP2 . DA A 1 12 ? 16.292 -9.318 126.028 1.00 67.08 ? 12 DA A OP2 1 ATOM 233 O "O5'" . DA A 1 12 ? 14.531 -7.580 126.182 1.00 66.52 ? 12 DA A "O5'" 1 ATOM 234 C "C5'" . DA A 1 12 ? 14.056 -6.322 126.718 1.00 64.09 ? 12 DA A "C5'" 1 ATOM 235 C "C4'" . DA A 1 12 ? 13.099 -5.652 125.757 1.00 60.98 ? 12 DA A "C4'" 1 ATOM 236 O "O4'" . DA A 1 12 ? 13.823 -4.826 124.817 1.00 56.17 ? 12 DA A "O4'" 1 ATOM 237 C "C3'" . DA A 1 12 ? 12.267 -6.596 124.894 1.00 61.69 ? 12 DA A "C3'" 1 ATOM 238 O "O3'" . DA A 1 12 ? 11.006 -5.946 124.629 1.00 67.46 ? 12 DA A "O3'" 1 ATOM 239 C "C2'" . DA A 1 12 ? 13.157 -6.794 123.678 1.00 57.80 ? 12 DA A "C2'" 1 ATOM 240 C "C1'" . DA A 1 12 ? 13.838 -5.436 123.528 1.00 53.50 ? 12 DA A "C1'" 1 ATOM 241 N N9 . DA A 1 12 ? 15.224 -5.443 123.054 1.00 47.76 ? 12 DA A N9 1 ATOM 242 C C8 . DA A 1 12 ? 16.196 -6.402 123.202 1.00 46.16 ? 12 DA A C8 1 ATOM 243 N N7 . DA A 1 12 ? 17.353 -6.064 122.688 1.00 45.19 ? 12 DA A N7 1 ATOM 244 C C5 . DA A 1 12 ? 17.129 -4.796 122.170 1.00 44.08 ? 12 DA A C5 1 ATOM 245 C C6 . DA A 1 12 ? 17.959 -3.893 121.486 1.00 44.25 ? 12 DA A C6 1 ATOM 246 N N6 . DA A 1 12 ? 19.241 -4.132 121.203 1.00 45.16 ? 12 DA A N6 1 ATOM 247 N N1 . DA A 1 12 ? 17.421 -2.716 121.096 1.00 45.09 ? 12 DA A N1 1 ATOM 248 C C2 . DA A 1 12 ? 16.138 -2.470 121.388 1.00 43.86 ? 12 DA A C2 1 ATOM 249 N N3 . DA A 1 12 ? 15.260 -3.238 122.027 1.00 43.68 ? 12 DA A N3 1 ATOM 250 C C4 . DA A 1 12 ? 15.825 -4.399 122.396 1.00 45.00 ? 12 DA A C4 1 ATOM 251 P P . DG A 1 13 ? 9.826 -6.687 123.803 1.00 66.68 ? 13 DG A P 1 ATOM 252 O OP1 . DG A 1 13 ? 8.515 -6.283 124.398 1.00 71.70 ? 13 DG A OP1 1 ATOM 253 O OP2 . DG A 1 13 ? 10.179 -8.131 123.665 1.00 63.63 ? 13 DG A OP2 1 ATOM 254 O "O5'" . DG A 1 13 ? 9.886 -5.972 122.382 1.00 63.49 ? 13 DG A "O5'" 1 ATOM 255 C "C5'" . DG A 1 13 ? 10.147 -4.557 122.219 1.00 61.42 ? 13 DG A "C5'" 1 ATOM 256 C "C4'" . DG A 1 13 ? 10.450 -4.305 120.761 1.00 60.51 ? 13 DG A "C4'" 1 ATOM 257 O "O4'" . DG A 1 13 ? 11.865 -4.503 120.555 1.00 56.29 ? 13 DG A "O4'" 1 ATOM 258 C "C3'" . DG A 1 13 ? 9.734 -5.311 119.853 1.00 61.69 ? 13 DG A "C3'" 1 ATOM 259 O "O3'" . DG A 1 13 ? 8.406 -4.872 119.449 1.00 68.39 ? 13 DG A "O3'" 1 ATOM 260 C "C2'" . DG A 1 13 ? 10.795 -5.796 118.865 1.00 58.96 ? 13 DG A "C2'" 1 ATOM 261 C "C1'" . DG A 1 13 ? 12.118 -5.196 119.342 1.00 54.33 ? 13 DG A "C1'" 1 ATOM 262 N N9 . DG A 1 13 ? 13.247 -6.102 119.574 1.00 51.04 ? 13 DG A N9 1 ATOM 263 C C8 . DG A 1 13 ? 13.256 -7.326 120.200 1.00 48.38 ? 13 DG A C8 1 ATOM 264 N N7 . DG A 1 13 ? 14.449 -7.853 120.276 1.00 48.19 ? 13 DG A N7 1 ATOM 265 C C5 . DG A 1 13 ? 15.277 -6.914 119.676 1.00 47.01 ? 13 DG A C5 1 ATOM 266 C C6 . DG A 1 13 ? 16.682 -6.921 119.468 1.00 46.57 ? 13 DG A C6 1 ATOM 267 O O6 . DG A 1 13 ? 17.504 -7.799 119.768 1.00 47.46 ? 13 DG A O6 1 ATOM 268 N N1 . DG A 1 13 ? 17.106 -5.772 118.810 1.00 42.08 ? 13 DG A N1 1 ATOM 269 C C2 . DG A 1 13 ? 16.294 -4.730 118.437 1.00 44.41 ? 13 DG A C2 1 ATOM 270 N N2 . DG A 1 13 ? 16.890 -3.688 117.843 1.00 44.49 ? 13 DG A N2 1 ATOM 271 N N3 . DG A 1 13 ? 14.990 -4.708 118.633 1.00 44.21 ? 13 DG A N3 1 ATOM 272 C C4 . DG A 1 13 ? 14.552 -5.822 119.254 1.00 46.91 ? 13 DG A C4 1 ATOM 273 P P . DA A 1 14 ? 8.144 -3.606 118.475 1.00 69.57 ? 14 DA A P 1 ATOM 274 O OP1 . DA A 1 14 ? 9.459 -3.055 118.039 1.00 76.17 ? 14 DA A OP1 1 ATOM 275 O OP2 . DA A 1 14 ? 7.194 -2.697 119.142 1.00 70.11 ? 14 DA A OP2 1 ATOM 276 O "O5'" . DA A 1 14 ? 7.441 -4.307 117.231 1.00 66.12 ? 14 DA A "O5'" 1 ATOM 277 C "C5'" . DA A 1 14 ? 7.871 -5.619 116.804 1.00 61.54 ? 14 DA A "C5'" 1 ATOM 278 C "C4'" . DA A 1 14 ? 6.754 -6.342 116.090 1.00 59.36 ? 14 DA A "C4'" 1 ATOM 279 O "O4'" . DA A 1 14 ? 5.550 -6.264 116.883 1.00 57.40 ? 14 DA A "O4'" 1 ATOM 280 C "C3'" . DA A 1 14 ? 6.375 -5.756 114.735 1.00 57.69 ? 14 DA A "C3'" 1 ATOM 281 O "O3'" . DA A 1 14 ? 7.128 -6.338 113.667 1.00 58.89 ? 14 DA A "O3'" 1 ATOM 282 C "C2'" . DA A 1 14 ? 4.923 -6.163 114.593 1.00 56.94 ? 14 DA A "C2'" 1 ATOM 283 C "C1'" . DA A 1 14 ? 4.414 -6.236 116.029 1.00 52.26 ? 14 DA A "C1'" 1 ATOM 284 N N9 . DA A 1 14 ? 3.582 -5.094 116.404 1.00 47.79 ? 14 DA A N9 1 ATOM 285 C C8 . DA A 1 14 ? 3.912 -3.913 117.023 1.00 46.67 ? 14 DA A C8 1 ATOM 286 N N7 . DA A 1 14 ? 2.900 -3.092 117.168 1.00 44.95 ? 14 DA A N7 1 ATOM 287 C C5 . DA A 1 14 ? 1.837 -3.772 116.592 1.00 43.33 ? 14 DA A C5 1 ATOM 288 C C6 . DA A 1 14 ? 0.485 -3.442 116.426 1.00 42.91 ? 14 DA A C6 1 ATOM 289 N N6 . DA A 1 14 ? -0.054 -2.296 116.844 1.00 44.13 ? 14 DA A N6 1 ATOM 290 N N1 . DA A 1 14 ? -0.310 -4.346 115.817 1.00 42.35 ? 14 DA A N1 1 ATOM 291 C C2 . DA A 1 14 ? 0.228 -5.500 115.402 1.00 43.60 ? 14 DA A C2 1 ATOM 292 N N3 . DA A 1 14 ? 1.484 -5.922 115.497 1.00 41.15 ? 14 DA A N3 1 ATOM 293 C C4 . DA A 1 14 ? 2.244 -5.003 116.115 1.00 43.43 ? 14 DA A C4 1 HETATM 294 MG MG . MG B 2 . ? 4.978 -6.879 123.197 1.00 61.21 ? 101 MG A MG 1 HETATM 295 MG MG . MG C 2 . ? 15.288 -8.373 115.983 1.00 62.00 ? 102 MG A MG 1 HETATM 296 O O . HOH D 3 . ? 24.446 -7.936 124.819 1.00 40.60 ? 201 HOH A O 1 HETATM 297 O O . HOH D 3 . ? 34.067 0.596 151.249 1.00 45.96 ? 202 HOH A O 1 HETATM 298 O O . HOH D 3 . ? 2.625 -0.596 118.086 1.00 50.13 ? 203 HOH A O 1 HETATM 299 O O . HOH D 3 . ? 14.861 -1.938 117.674 1.00 59.00 ? 204 HOH A O 1 HETATM 300 O O . HOH D 3 . ? 23.021 -8.454 134.647 1.00 52.14 ? 205 HOH A O 1 HETATM 301 O O . HOH D 3 . ? 12.583 -1.850 120.111 1.00 60.71 ? 206 HOH A O 1 HETATM 302 O O . HOH D 3 . ? 10.570 -8.961 120.855 1.00 58.48 ? 207 HOH A O 1 HETATM 303 O O . HOH D 3 . ? 24.415 9.510 154.276 1.00 61.33 ? 208 HOH A O 1 HETATM 304 O O . HOH D 3 . ? 34.546 0.851 161.726 1.00 45.93 ? 209 HOH A O 1 HETATM 305 O O . HOH D 3 . ? 8.945 -0.022 118.508 1.00 55.87 ? 210 HOH A O 1 HETATM 306 O O . HOH D 3 . ? 28.191 -7.249 159.400 1.00 60.42 ? 211 HOH A O 1 HETATM 307 O O . HOH D 3 . ? 17.820 -10.951 117.925 1.00 61.19 ? 212 HOH A O 1 HETATM 308 O O . HOH D 3 . ? 19.595 -9.137 123.231 1.00 65.22 ? 213 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DA 14 14 14 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 2 MG MG A . C 2 MG 1 102 3 MG MG A . D 3 HOH 1 201 11 HOH HOH A . D 3 HOH 2 202 12 HOH HOH A . D 3 HOH 3 203 2 HOH HOH A . D 3 HOH 4 204 17 HOH HOH A . D 3 HOH 5 205 15 HOH HOH A . D 3 HOH 6 206 8 HOH HOH A . D 3 HOH 7 207 3 HOH HOH A . D 3 HOH 8 208 16 HOH HOH A . D 3 HOH 9 209 9 HOH HOH A . D 3 HOH 10 210 7 HOH HOH A . D 3 HOH 11 211 13 HOH HOH A . D 3 HOH 12 212 6 HOH HOH A . D 3 HOH 13 213 10 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1540 ? 1 MORE -12 ? 1 'SSA (A^2)' 5920 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_767 -x+2,-x+y+1,-z+7/3 -0.5000000000 -0.8660254038 0.0000000000 38.9835000000 -0.8660254038 0.5000000000 0.0000000000 22.5071342190 0.0000000000 0.0000000000 -1.0000000000 283.5723333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-11-11 2 'Structure model' 1 1 2015-12-16 3 'Structure model' 1 2 2017-09-27 4 'Structure model' 1 3 2019-11-27 5 'Structure model' 1 4 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_struct_oper_list 3 3 'Structure model' software 4 4 'Structure model' pdbx_audit_support 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 3 'Structure model' '_software.classification' 4 4 'Structure model' '_pdbx_audit_support.funding_organization' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 MG A MG 101 ? ? 1_555 O A HOH 211 ? ? 6_667 1.68 2 1 O A HOH 209 ? ? 1_555 O A HOH 209 ? ? 5_557 1.82 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.39 _pdbx_validate_rmsd_angle.angle_target_value 109.80 _pdbx_validate_rmsd_angle.angle_deviation 7.59 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5BZ9 'double helix' 5BZ9 'b-form double helix' 5BZ9 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DG 11 6_767 5.777 -0.620 0.034 28.694 5.491 -107.964 1 A_DG1:DG11_A A 1 ? A 11 ? 7 4 1 A DG 1 1_555 A DG 11 1_555 5.777 -0.620 0.034 28.694 5.491 -107.964 2 A_DG1:DG11_A A 1 ? A 11 ? 7 4 1 A DA 3 1_555 A DG 10 6_767 -6.627 -4.287 0.317 -26.273 -4.841 2.238 3 A_DA3:DG10_A A 3 ? A 10 ? 11 9 1 A DA 4 1_555 A DT 9 6_767 0.066 0.068 -0.435 -1.505 0.705 1.421 4 A_DA4:DT9_A A 4 ? A 9 ? 20 1 1 A DA 5 1_555 A DT 8 6_767 -0.265 0.092 0.040 14.262 -19.663 3.303 5 A_DA5:DT8_A A 5 ? A 8 ? 20 1 1 A DC 6 1_555 A DG 7 6_767 0.515 0.001 -0.060 14.140 -26.056 7.590 6 A_DC6:DG7_A A 6 ? A 7 ? 19 1 1 A DG 7 1_555 A DC 6 6_767 -0.515 0.001 -0.060 -14.140 -26.056 7.590 7 A_DG7:DC6_A A 7 ? A 6 ? 19 1 1 A DT 8 1_555 A DA 5 6_767 0.265 0.092 0.040 -14.262 -19.663 3.303 8 A_DT8:DA5_A A 8 ? A 5 ? 20 1 1 A DT 9 1_555 A DA 4 6_767 -0.066 0.068 -0.435 1.505 0.705 1.421 9 A_DT9:DA4_A A 9 ? A 4 ? 20 1 1 A DG 10 1_555 A DA 3 6_767 6.627 -4.287 0.317 26.273 -4.841 2.238 10 A_DG10:DA3_A A 10 ? A 3 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 3 1_555 A DG 10 6_767 A DA 4 1_555 A DT 9 6_767 -0.828 1.800 2.980 -0.148 6.428 59.505 1.505 0.823 3.143 6.456 0.148 59.819 1 AA_DA3DA4:DT9DG10_AA A 3 ? A 10 ? A 4 ? A 9 ? 1 A DA 4 1_555 A DT 9 6_767 A DA 5 1_555 A DT 8 6_767 -0.721 0.208 2.896 -4.634 2.982 30.001 -0.142 0.535 2.977 5.700 8.858 30.492 2 AA_DA4DA5:DT8DT9_AA A 4 ? A 9 ? A 5 ? A 8 ? 1 A DA 5 1_555 A DT 8 6_767 A DC 6 1_555 A DG 7 6_767 0.701 -0.286 3.318 -0.730 -1.011 37.366 -0.312 -1.191 3.310 -1.577 1.139 37.386 3 AA_DA5DC6:DG7DT8_AA A 5 ? A 8 ? A 6 ? A 7 ? 1 A DC 6 1_555 A DG 7 6_767 A DG 7 1_555 A DC 6 6_767 0.000 -0.073 3.890 0.000 8.819 37.216 -1.432 0.000 3.776 13.586 0.000 38.210 4 AA_DC6DG7:DC6DG7_AA A 6 ? A 7 ? A 7 ? A 6 ? 1 A DG 7 1_555 A DC 6 6_767 A DT 8 1_555 A DA 5 6_767 -0.701 -0.286 3.318 0.730 -1.011 37.366 -0.312 1.191 3.310 -1.577 -1.139 37.386 5 AA_DG7DT8:DA5DC6_AA A 7 ? A 6 ? A 8 ? A 5 ? 1 A DT 8 1_555 A DA 5 6_767 A DT 9 1_555 A DA 4 6_767 0.721 0.208 2.896 4.634 2.982 30.001 -0.142 -0.535 2.977 5.700 -8.858 30.492 6 AA_DT8DT9:DA4DA5_AA A 8 ? A 5 ? A 9 ? A 4 ? 1 A DT 9 1_555 A DA 4 6_767 A DG 10 1_555 A DA 3 6_767 0.828 1.800 2.980 0.148 6.428 59.505 1.505 -0.823 3.143 6.456 -0.148 59.819 7 AA_DT9DG10:DA3DA4_AA A 9 ? A 4 ? A 10 ? A 3 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5BXW _pdbx_initial_refinement_model.details ? #