0.024027 0.000000 0.000016 0.000000 0.022920 0.000000 0.000000 0.000000 0.018986 0.00000 0.00000 0.00000 Orts, J. Waelti, M.A. Marsh, M. Vera, L. Gossert, A.D. Guentert, P. Riek, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.04 90.00 41.620 43.630 52.670 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking I -1 126.904 IODIDE ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C30 H30 Cl2 N4 O4 581.490 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one Nutlin 3a non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N I N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C N 212 N C N 213 N C N 214 N C N 215 N N N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N S N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N O N 253 N C N 254 N N N 255 N C N 256 N C N 257 N O N 258 N N N 259 N C N 260 N C N 261 N N N 262 N C Y 263 N C Y 264 N C Y 265 N C Y 266 N C N 267 N O N 268 N C N 269 N C N 270 N C Y 271 N C Y 272 N C N 273 N O N 274 N C N 275 R C Y 276 N C Y 277 N C Y 278 N C Y 279 N C N 280 N CL Y 281 N C Y 282 N C N 283 S C N 284 N N Y 285 N C Y 286 N C Y 287 N C Y 288 N C N 289 N CL Y 290 N C Y 291 N C N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C N 367 N O N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N S N 377 N O N 378 N O N 379 N O N 380 N O N 381 N N N 382 S C N 383 N C N 384 N O N 385 R C N 386 N O N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C N 409 N O N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 N C N 427 N C N 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing Y 250 N doub Y 251 N sing N 252 N sing N 253 N sing Y 254 N sing Y 255 N doub Y 256 N sing N 257 N sing N 258 N doub N 259 N sing Y 260 N doub N 261 N sing Y 262 N sing N 263 N sing Y 264 N doub Y 265 N doub Y 266 N sing N 267 N sing N 268 N sing N 269 N sing Y 270 N doub Y 271 N sing Y 272 N sing Y 273 N doub Y 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N doub Y 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing Y 322 N doub Y 323 N sing Y 324 N sing N 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N doub N 400 N sing Y 401 N doub N 402 N sing Y 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing To Be Published 0353 NMR Molecular Replacement, NMR2 10.2210/pdb5c5a/pdb pdb_00005c5a ASN B 79 HAS WRONG CHIRALITY AT ATOM CA 100 1 PIXEL 2014-06-12 DECTRIS PILATUS 2M-F SINGLE WAVELENGTH M x-ray 1 1.0 1.0 X06DA SLS 1.0 SYNCHROTRON SLS BEAMLINE X06DA 10770.636 E3 ubiquitin-protein ligase Mdm2 6.3.2.- 2 man polymer 581.490 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one 2 syn non-polymer 96.063 SULFATE ION 2 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 126.904 IODIDE ION 4 syn non-polymer 18.015 water 172 nat water Double minute 2 protein,Hdm2,Oncoprotein Mdm2,p53-binding protein Mdm2 no no PASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKI YTMIYRNLVVVN PASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKI YTMIYRNLVVVN A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 92 MDM2 9606 Homo sapiens 562 Escherichia coli plasmid Biological sequence pET15b 2.19 43.9 VAPOR DIFFUSION, SITTING DROP 0.2M Potassium iodide, 2.2M Ammonium Sulfate 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Data collection Database references Refinement description 1 0 2016-06-29 1 1 2024-01-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession Switzerland FEBS Switzerland Lichtenberg program of the Volkswagen Foundation Japan Society for the Promotion of Science N RCSB Y PDBE 2015-06-19 REL REL NUT 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one SO4 SULFATE ION CL CHLORIDE ION IOD IODIDE ION HOH water 4HG7 PDB experimental model NUT 203 2 NUT NUT 201 A SO4 1 3 SO4 SO4 202 A CL 4 4 CL CL 203 A IOD 1 5 IOD IOD 204 A NUT 204 2 NUT NUT 201 B SO4 1 3 SO4 SO4 202 B CL 5 4 CL CL 203 B IOD 2 5 IOD IOD 204 B IOD 3 5 IOD IOD 205 B IOD 4 5 IOD IOD 206 B HOH 68 6 HOH HOH 301 A HOH 162 6 HOH HOH 302 A HOH 29 6 HOH HOH 303 A HOH 150 6 HOH HOH 304 A HOH 120 6 HOH HOH 305 A HOH 67 6 HOH HOH 306 A HOH 92 6 HOH HOH 307 A HOH 17 6 HOH HOH 308 A HOH 93 6 HOH HOH 309 A HOH 139 6 HOH HOH 310 A HOH 100 6 HOH HOH 311 A HOH 57 6 HOH HOH 312 A HOH 9 6 HOH HOH 313 A HOH 14 6 HOH HOH 314 A HOH 76 6 HOH HOH 315 A HOH 8 6 HOH HOH 316 A HOH 1 6 HOH HOH 317 A HOH 22 6 HOH HOH 318 A HOH 36 6 HOH HOH 319 A HOH 50 6 HOH HOH 320 A HOH 66 6 HOH HOH 321 A HOH 45 6 HOH HOH 322 A HOH 21 6 HOH HOH 323 A HOH 96 6 HOH HOH 324 A HOH 18 6 HOH HOH 325 A HOH 44 6 HOH HOH 326 A HOH 80 6 HOH HOH 327 A HOH 127 6 HOH HOH 328 A HOH 101 6 HOH HOH 329 A HOH 115 6 HOH HOH 330 A HOH 75 6 HOH HOH 331 A HOH 37 6 HOH HOH 332 A HOH 38 6 HOH HOH 333 A HOH 84 6 HOH HOH 334 A HOH 97 6 HOH HOH 335 A HOH 131 6 HOH HOH 336 A HOH 6 6 HOH HOH 337 A HOH 78 6 HOH HOH 338 A HOH 88 6 HOH HOH 339 A HOH 164 6 HOH HOH 340 A HOH 4 6 HOH HOH 341 A HOH 70 6 HOH HOH 342 A HOH 140 6 HOH HOH 343 A HOH 163 6 HOH HOH 344 A HOH 114 6 HOH HOH 345 A HOH 154 6 HOH HOH 346 A HOH 109 6 HOH HOH 347 A HOH 13 6 HOH HOH 348 A HOH 125 6 HOH HOH 349 A HOH 24 6 HOH HOH 350 A HOH 43 6 HOH HOH 351 A HOH 59 6 HOH HOH 352 A HOH 27 6 HOH HOH 353 A HOH 103 6 HOH HOH 354 A HOH 28 6 HOH HOH 355 A HOH 106 6 HOH HOH 356 A HOH 105 6 HOH HOH 357 A HOH 11 6 HOH HOH 358 A HOH 124 6 HOH HOH 359 A HOH 111 6 HOH HOH 360 A HOH 112 6 HOH HOH 361 A HOH 52 6 HOH HOH 362 A HOH 171 6 HOH HOH 363 A HOH 104 6 HOH HOH 364 A HOH 107 6 HOH HOH 365 A HOH 26 6 HOH HOH 366 A HOH 129 6 HOH HOH 367 A HOH 130 6 HOH HOH 368 A HOH 136 6 HOH HOH 369 A HOH 147 6 HOH HOH 370 A HOH 160 6 HOH HOH 371 A HOH 128 6 HOH HOH 372 A HOH 145 6 HOH HOH 373 A HOH 35 6 HOH HOH 374 A HOH 151 6 HOH HOH 375 A HOH 165 6 HOH HOH 376 A HOH 172 6 HOH HOH 377 A HOH 146 6 HOH HOH 378 A HOH 63 6 HOH HOH 379 A HOH 31 6 HOH HOH 380 A HOH 71 6 HOH HOH 381 A HOH 133 6 HOH HOH 382 A HOH 60 6 HOH HOH 383 A HOH 148 6 HOH HOH 384 A HOH 170 6 HOH HOH 385 A HOH 113 6 HOH HOH 386 A HOH 86 6 HOH HOH 387 A HOH 126 6 HOH HOH 301 B HOH 16 6 HOH HOH 302 B HOH 74 6 HOH HOH 303 B HOH 168 6 HOH HOH 304 B HOH 119 6 HOH HOH 305 B HOH 62 6 HOH HOH 306 B HOH 33 6 HOH HOH 307 B HOH 85 6 HOH HOH 308 B HOH 49 6 HOH HOH 309 B HOH 40 6 HOH HOH 310 B HOH 12 6 HOH HOH 311 B HOH 110 6 HOH HOH 312 B HOH 91 6 HOH HOH 313 B HOH 7 6 HOH HOH 314 B HOH 42 6 HOH HOH 315 B HOH 19 6 HOH HOH 316 B HOH 118 6 HOH HOH 317 B HOH 3 6 HOH HOH 318 B HOH 157 6 HOH HOH 319 B HOH 51 6 HOH HOH 320 B HOH 95 6 HOH HOH 321 B HOH 30 6 HOH HOH 322 B HOH 72 6 HOH HOH 323 B HOH 61 6 HOH HOH 324 B HOH 169 6 HOH HOH 325 B HOH 47 6 HOH HOH 326 B HOH 20 6 HOH HOH 327 B HOH 123 6 HOH HOH 328 B HOH 79 6 HOH HOH 329 B HOH 46 6 HOH HOH 330 B HOH 99 6 HOH HOH 331 B HOH 98 6 HOH HOH 332 B HOH 90 6 HOH HOH 333 B HOH 132 6 HOH HOH 334 B HOH 81 6 HOH HOH 335 B HOH 83 6 HOH HOH 336 B HOH 77 6 HOH HOH 337 B HOH 69 6 HOH HOH 338 B HOH 5 6 HOH HOH 339 B HOH 73 6 HOH HOH 340 B HOH 159 6 HOH HOH 341 B HOH 2 6 HOH HOH 342 B HOH 161 6 HOH HOH 343 B HOH 116 6 HOH HOH 344 B HOH 108 6 HOH HOH 345 B HOH 64 6 HOH HOH 346 B HOH 23 6 HOH HOH 347 B HOH 155 6 HOH HOH 348 B HOH 122 6 HOH HOH 349 B HOH 15 6 HOH HOH 350 B HOH 25 6 HOH HOH 351 B HOH 55 6 HOH HOH 352 B HOH 48 6 HOH HOH 353 B HOH 39 6 HOH HOH 354 B HOH 153 6 HOH HOH 355 B HOH 54 6 HOH HOH 356 B HOH 144 6 HOH HOH 357 B HOH 53 6 HOH HOH 358 B HOH 143 6 HOH HOH 359 B HOH 102 6 HOH HOH 360 B HOH 152 6 HOH HOH 361 B HOH 158 6 HOH HOH 362 B HOH 89 6 HOH HOH 363 B HOH 10 6 HOH HOH 364 B HOH 32 6 HOH HOH 365 B HOH 135 6 HOH HOH 366 B HOH 137 6 HOH HOH 367 B HOH 94 6 HOH HOH 368 B HOH 142 6 HOH HOH 369 B HOH 141 6 HOH HOH 370 B HOH 82 6 HOH HOH 371 B HOH 149 6 HOH HOH 372 B HOH 138 6 HOH HOH 373 B HOH 41 6 HOH HOH 374 B HOH 56 6 HOH HOH 375 B HOH 117 6 HOH HOH 376 B HOH 34 6 HOH HOH 377 B HOH 156 6 HOH HOH 378 B HOH 65 6 HOH HOH 379 B HOH 167 6 HOH HOH 380 B HOH 58 6 HOH HOH 381 B HOH 166 6 HOH HOH 382 B HOH 121 6 HOH HOH 383 B HOH 87 6 HOH HOH 384 B HOH 134 6 HOH HOH 385 B PRO 20 n 1 PRO 20 A ALA 21 n 2 ALA 21 A SER 22 n 3 SER 22 A GLU 23 n 4 GLU 23 A GLN 24 n 5 GLN 24 A GLU 25 n 6 GLU 25 A THR 26 n 7 THR 26 A LEU 27 n 8 LEU 27 A VAL 28 n 9 VAL 28 A ARG 29 n 10 ARG 29 A PRO 30 n 11 PRO 30 A LYS 31 n 12 LYS 31 A PRO 32 n 13 PRO 32 A LEU 33 n 14 LEU 33 A LEU 34 n 15 LEU 34 A LEU 35 n 16 LEU 35 A LYS 36 n 17 LYS 36 A LEU 37 n 18 LEU 37 A LEU 38 n 19 LEU 38 A LYS 39 n 20 LYS 39 A SER 40 n 21 SER 40 A VAL 41 n 22 VAL 41 A GLY 42 n 23 GLY 42 A ALA 43 n 24 ALA 43 A GLN 44 n 25 GLN 44 A LYS 45 n 26 LYS 45 A ASP 46 n 27 ASP 46 A THR 47 n 28 THR 47 A TYR 48 n 29 TYR 48 A THR 49 n 30 THR 49 A MET 50 n 31 MET 50 A LYS 51 n 32 LYS 51 A GLU 52 n 33 GLU 52 A VAL 53 n 34 VAL 53 A LEU 54 n 35 LEU 54 A PHE 55 n 36 PHE 55 A TYR 56 n 37 TYR 56 A LEU 57 n 38 LEU 57 A GLY 58 n 39 GLY 58 A GLN 59 n 40 GLN 59 A TYR 60 n 41 TYR 60 A ILE 61 n 42 ILE 61 A MET 62 n 43 MET 62 A THR 63 n 44 THR 63 A LYS 64 n 45 LYS 64 A ARG 65 n 46 ARG 65 A LEU 66 n 47 LEU 66 A TYR 67 n 48 TYR 67 A ASP 68 n 49 ASP 68 A GLU 69 n 50 GLU 69 A LYS 70 n 51 LYS 70 A GLN 71 n 52 GLN 71 A GLN 72 n 53 GLN 72 A HIS 73 n 54 HIS 73 A ILE 74 n 55 ILE 74 A VAL 75 n 56 VAL 75 A TYR 76 n 57 TYR 76 A CYS 77 n 58 CYS 77 A SER 78 n 59 SER 78 A ASN 79 n 60 ASN 79 A ASP 80 n 61 ASP 80 A LEU 81 n 62 LEU 81 A LEU 82 n 63 LEU 82 A GLY 83 n 64 GLY 83 A ASP 84 n 65 ASP 84 A LEU 85 n 66 LEU 85 A PHE 86 n 67 PHE 86 A GLY 87 n 68 GLY 87 A VAL 88 n 69 VAL 88 A PRO 89 n 70 PRO 89 A SER 90 n 71 SER 90 A PHE 91 n 72 PHE 91 A SER 92 n 73 SER 92 A VAL 93 n 74 VAL 93 A LYS 94 n 75 LYS 94 A GLU 95 n 76 GLU 95 A HIS 96 n 77 HIS 96 A ARG 97 n 78 ARG 97 A LYS 98 n 79 LYS 98 A ILE 99 n 80 ILE 99 A TYR 100 n 81 TYR 100 A THR 101 n 82 THR 101 A MET 102 n 83 MET 102 A ILE 103 n 84 ILE 103 A TYR 104 n 85 TYR 104 A ARG 105 n 86 ARG 105 A ASN 106 n 87 ASN 106 A LEU 107 n 88 LEU 107 A VAL 108 n 89 VAL 108 A VAL 109 n 90 VAL 109 A VAL 110 n 91 VAL 110 A ASN 111 n 92 ASN 111 A PRO 20 n 1 PRO 20 B ALA 21 n 2 ALA 21 B SER 22 n 3 SER 22 B GLU 23 n 4 GLU 23 B GLN 24 n 5 GLN 24 B GLU 25 n 6 GLU 25 B THR 26 n 7 THR 26 B LEU 27 n 8 LEU 27 B VAL 28 n 9 VAL 28 B ARG 29 n 10 ARG 29 B PRO 30 n 11 PRO 30 B LYS 31 n 12 LYS 31 B PRO 32 n 13 PRO 32 B LEU 33 n 14 LEU 33 B LEU 34 n 15 LEU 34 B LEU 35 n 16 LEU 35 B LYS 36 n 17 LYS 36 B LEU 37 n 18 LEU 37 B LEU 38 n 19 LEU 38 B LYS 39 n 20 LYS 39 B SER 40 n 21 SER 40 B VAL 41 n 22 VAL 41 B GLY 42 n 23 GLY 42 B ALA 43 n 24 ALA 43 B GLN 44 n 25 GLN 44 B LYS 45 n 26 LYS 45 B ASP 46 n 27 ASP 46 B THR 47 n 28 THR 47 B TYR 48 n 29 TYR 48 B THR 49 n 30 THR 49 B MET 50 n 31 MET 50 B LYS 51 n 32 LYS 51 B GLU 52 n 33 GLU 52 B VAL 53 n 34 VAL 53 B LEU 54 n 35 LEU 54 B PHE 55 n 36 PHE 55 B TYR 56 n 37 TYR 56 B LEU 57 n 38 LEU 57 B GLY 58 n 39 GLY 58 B GLN 59 n 40 GLN 59 B TYR 60 n 41 TYR 60 B ILE 61 n 42 ILE 61 B MET 62 n 43 MET 62 B THR 63 n 44 THR 63 B LYS 64 n 45 LYS 64 B ARG 65 n 46 ARG 65 B LEU 66 n 47 LEU 66 B TYR 67 n 48 TYR 67 B ASP 68 n 49 ASP 68 B GLU 69 n 50 GLU 69 B LYS 70 n 51 LYS 70 B GLN 71 n 52 GLN 71 B GLN 72 n 53 GLN 72 B HIS 73 n 54 HIS 73 B ILE 74 n 55 ILE 74 B VAL 75 n 56 VAL 75 B TYR 76 n 57 TYR 76 B CYS 77 n 58 CYS 77 B SER 78 n 59 SER 78 B ASN 79 n 60 ASN 79 B ASP 80 n 61 ASP 80 B LEU 81 n 62 LEU 81 B LEU 82 n 63 LEU 82 B GLY 83 n 64 GLY 83 B ASP 84 n 65 ASP 84 B LEU 85 n 66 LEU 85 B PHE 86 n 67 PHE 86 B GLY 87 n 68 GLY 87 B VAL 88 n 69 VAL 88 B PRO 89 n 70 PRO 89 B SER 90 n 71 SER 90 B PHE 91 n 72 PHE 91 B SER 92 n 73 SER 92 B VAL 93 n 74 VAL 93 B LYS 94 n 75 LYS 94 B GLU 95 n 76 GLU 95 B HIS 96 n 77 HIS 96 B ARG 97 n 78 ARG 97 B LYS 98 n 79 LYS 98 B ILE 99 n 80 ILE 99 B TYR 100 n 81 TYR 100 B THR 101 n 82 THR 101 B MET 102 n 83 MET 102 B ILE 103 n 84 ILE 103 B TYR 104 n 85 TYR 104 B ARG 105 n 86 ARG 105 B ASN 106 n 87 ASN 106 B LEU 107 n 88 LEU 107 B VAL 108 n 89 VAL 108 B VAL 109 n 90 VAL 109 B VAL 110 n 91 VAL 110 B ASN 111 n 92 ASN 111 B author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 48 A O TYR 29 A N VAL 28 A N VAL 9 A N ARG 29 A N ARG 10 A O VAL 108 A O VAL 89 A N ASP 68 A N ASP 49 A O ILE 74 A O ILE 55 A N VAL 75 A N VAL 56 A O PHE 91 A O PHE 72 B O TYR 48 B O TYR 29 B N VAL 28 B N VAL 9 B N ARG 29 B N ARG 10 B O VAL 108 B O VAL 89 B N ASP 68 B N ASP 49 B O ILE 74 B O ILE 55 B N VAL 75 B N VAL 56 B O PHE 91 B O PHE 72 1 B CA ASN 79 PLANAR 1 B B O O HOH HOH 319 380 2.05 1 B B O O HOH HOH 366 382 2.06 1 B B O O HOH HOH 357 366 2.08 1 A A O O HOH HOH 382 386 2.12 1 B B O O HOH HOH 360 368 2.14 1 A A O O HOH HOH 377 384 2.15 1 A A O O HOH HOH 375 377 2.17 1 A A CB CG GLU GLU 52 52 -0.120 0.019 1.517 1.397 N 1 B B CB CG GLU GLU 52 52 -0.128 0.019 1.517 1.389 N 1 B B O O HOH HOH 362 380 2.11 1_555 2_555 1 A GLN 71 -156.77 77.13 1 A ASN 79 53.13 9.00 1 B GLN 71 -159.28 76.17 1 B ASN 79 -89.27 30.38 0.1683 0.1531 0.1537 1.146 41.620 3521 53749 3.78 69.83 0.13 1 FREE R-VALUE 1.05 MOLECULAR REPLACEMENT 21.11 0.90 1.11 4HG7 ML FLAT BULK SOLVENT MODEL 1.146 41.620 172 1780 96 0 1512 0.014 1708 1.593 2322 12.080 702 0.189 256 0.009 338 0.5061 0.4376 1.1613 4 162 3.00 0.4235 0.3550 1.1779 24 379 7.00 0.4497 0.3235 1.1954 17 747 14.00 0.2936 0.3152 1.2141 47 1135 22.00 0.3461 0.3173 1.2340 57 1512 30.00 0.2823 0.3315 1.2553 82 1965 38.00 0.2757 0.3031 1.2781 90 2417 48.00 0.3207 0.2851 1.3027 116 2958 57.00 0.2705 0.2837 1.3293 143 3431 67.00 0.3254 0.2626 1.3582 168 4046 78.00 0.3439 0.2582 1.3898 152 4227 83.00 0.3062 0.2357 1.4246 178 4421 85.00 0.2133 0.2076 1.4631 206 4345 86.00 0.1899 0.1911 1.5061 179 4588 89.00 0.2306 0.1731 1.5548 178 4698 92.00 0.1750 0.1558 1.6103 195 4676 92.00 0.1876 0.1417 1.6748 165 4874 93.00 0.1558 0.1273 1.7510 216 4759 95.00 0.1388 0.1289 1.8434 164 4850 95.00 0.1281 0.1222 1.9588 196 4969 95.00 0.1628 0.1115 2.1101 191 4854 95.00 0.0967 0.1121 2.3224 193 4816 94.00 0.1387 0.1282 2.6584 190 4877 95.00 0.1492 0.1316 3.3491 190 4934 95.00 0.1522 0.1509 41.6475 180 4873 95.00 1.146 41.62 5C5A 53751 0.06794 1 12.58 2.9 79.13 1.146 1.187 1 1.2 12.95 refinement PHENIX 1.9_1692 data reduction XDS data scaling XDS model building PHENIX phasing PHASER Crystal Structure of HDM2 in complex with Nutlin-3a 1 N N 1 N N 2 N N 3 N N 4 N N 5 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 6 N N 6 N N A LYS 31 A LYS 12 HELX_P A GLY 42 A GLY 23 1 AA1 12 A MET 50 A MET 31 HELX_P A ARG 65 A ARG 46 1 AA2 16 A ASP 80 A ASP 61 HELX_P A GLY 87 A GLY 68 1 AA3 8 A GLU 95 A GLU 76 HELX_P A ARG 105 A ARG 86 1 AA4 11 B LYS 31 B LYS 12 HELX_P B GLY 42 B GLY 23 1 AA5 12 B MET 50 B MET 31 HELX_P B ARG 65 B ARG 46 1 AA6 16 B ASP 80 B ASP 61 HELX_P B GLY 87 B GLY 68 1 AA7 8 B GLU 95 B GLU 76 HELX_P B ARG 105 B ARG 86 1 AA8 11 LIGASE Drug Design, HDM2, complex structure, ligase MDM2_HUMAN UNP 1 20 Q00987 PASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKI YTMIYRNLVVVN 20 111 5C5A 20 111 Q00987 A 1 1 92 20 111 5C5A 20 111 Q00987 B 1 1 92 3 3 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 48 A TYR 29 A THR 49 A THR 30 A LEU 27 A LEU 8 A PRO 30 A PRO 11 A LEU 107 A LEU 88 A VAL 109 A VAL 90 A TYR 67 A TYR 48 A ASP 68 A ASP 49 A GLN 71 A GLN 52 A TYR 76 A TYR 57 A SER 90 A SER 71 A SER 92 A SER 73 B TYR 48 B TYR 29 B THR 49 B THR 30 B LEU 27 B LEU 8 B PRO 30 B PRO 11 B LEU 107 B LEU 88 B VAL 109 B VAL 90 B TYR 67 B TYR 48 B ASP 68 B ASP 49 B GLN 71 B GLN 52 B TYR 76 B TYR 57 B SER 90 B SER 71 B SER 92 B SER 73 binding site for residue NUT A 201 A NUT 201 Software 12 binding site for residue SO4 A 202 A SO4 202 Software 3 binding site for residue IOD A 204 A IOD 204 Software 2 binding site for residue NUT B 201 B NUT 201 Software 12 binding site for residue SO4 B 202 B SO4 202 Software 7 binding site for residue IOD B 204 B IOD 204 Software 2 binding site for residue IOD B 205 B IOD 205 Software 1 binding site for residue IOD B 206 B IOD 206 Software 1 A LEU 54 A LEU 35 12 1_555 A GLY 58 A GLY 39 12 1_555 A GLN 59 A GLN 40 12 1_555 A MET 62 A MET 43 12 1_555 A GLN 72 A GLN 53 12 1_555 A VAL 93 A VAL 74 12 1_555 A HIS 96 A HIS 77 12 1_555 A ILE 99 A ILE 80 12 1_555 A TYR 100 A TYR 81 12 1_555 A HOH 335 M HOH 12 1_555 A HOH 350 M HOH 12 1_555 B ARG 29 B ARG 10 12 1_555 A ARG 105 A ARG 86 3 1_555 A HOH 302 M HOH 3 1_555 A HOH 304 M HOH 3 1_555 A THR 26 A THR 7 2 1_555 A LYS 51 A LYS 32 2 1_555 A ARG 29 A ARG 10 12 1_655 B LEU 54 B LEU 35 12 1_555 B GLY 58 B GLY 39 12 1_555 B GLN 59 B GLN 40 12 1_555 B MET 62 B MET 43 12 1_555 B GLN 72 B GLN 53 12 1_555 B VAL 93 B VAL 74 12 1_555 B HIS 96 B HIS 77 12 1_555 B ILE 99 B ILE 80 12 1_555 B TYR 100 B TYR 81 12 1_555 B HOH 332 N HOH 12 1_555 B HOH 347 N HOH 12 1_555 B SER 22 B SER 3 7 1_565 B GLU 23 B GLU 4 7 1_565 B GLN 24 B GLN 5 7 1_565 B LYS 70 B LYS 51 7 1_555 B HOH 304 N HOH 7 1_555 B HOH 320 N HOH 7 1_565 B HOH 329 N HOH 7 1_565 B THR 26 B THR 7 2 1_555 B LYS 51 B LYS 32 2 1_555 A LEU 33 A LEU 14 1 1_655 B LEU 33 B LEU 14 1 1_555 4 P 1 21 1