0.010295
0.005944
0.000000
0.000000
0.011888
0.000000
0.000000
0.000000
0.008690
0.00000
0.00000
0.00000
Tews, I.
Machelett, M.M.
Mansour, S.
Gadola, S.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
97.130
97.130
115.080
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C12 H24 O2
200.318
LAURIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C18 H36 O2
284.477
STEARIC ACID
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
C
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
N
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
S
C
N
191
N
C
N
192
N
O
N
193
N
C
Y
194
N
C
Y
195
N
N
Y
196
N
C
Y
197
N
C
Y
198
N
N
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
S
C
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
N
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
S
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
P
N
326
N
O
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
O
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
C
N
362
N
O
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
C
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
R
C
N
422
N
O
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
N
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
N
433
N
sing
Y
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
Y
454
N
doub
Y
455
N
sing
Y
456
N
sing
N
457
N
sing
Y
458
N
doub
N
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
1091-6490
113
E1266
E1275
10.1073/pnas.1519246113
26884207
Cholesteryl esters stabilize human CD1c conformations for recognition by self-reactive T cells.
2016
10.2210/pdb5c9j/pdb
pdb_00005c9j
100
1
CCD
2011-08-08
ADSC QUANTUM 315r
Si(111) double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
I04
Diamond
0.9795
SYNCHROTRON
DIAMOND BEAMLINE I04
31472.225
T-cell surface glycoprotein CD1c,T-cell surface glycoprotein CD1b
1
man
polymer
11748.161
Beta-2-microglobulin
1
man
polymer
200.318
LAURIC ACID
2
syn
non-polymer
284.477
STEARIC ACID
1
syn
non-polymer
92.094
GLYCEROL
4
syn
non-polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
18.015
water
116
nat
water
no
no
EHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDSESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHA
SQDYSKYPFEVQVKAGCELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNLIRS
TCPRFLLGLLDAGKMYVHRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWY
LRATLDVADGEAAGLSCRVKHSSLEGQDIILYWGPGSGGGL
EHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDSESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHA
SQDYSKYPFEVQVKAGCELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNLIRS
TCPRFLLGLLDAGKMYVHRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWY
LRATLDVADGEAAGLSCRVKHSSLEGQDIILYWGPGSGGGL
A
polypeptide(L)
no
no
MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA
CRVNHVTLSQPKIVKWDRD
MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA
CRVNHVTLSQPKIVKWDRD
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
180
CD1C
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
Rosetta
Plasmid
Biological sequence
pET23d
Human
sample
181
273
CD1B
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
Rosetta
Plasmid
Biological sequence
pET23d
Human
sample
1
99
B2M, CDABP0092, HDCMA22P
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
Rosetta
Plasmid
Biological sequence
pET23d
3.44
64.20
VAPOR DIFFUSION, SITTING DROP
7.5
0.2M Magnesium chloride, 0.1M Tris pH 8, 10% PEG 8000, 1:1 protein to precipitant ratio.
293.15
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2016-03-02
1
1
2016-03-09
1
2
2024-01-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United Kingdom
HEFCE
N
RCSB
Y
PDBE
2015-06-27
REL
REL
DAO
LAURIC ACID
STE
STEARIC ACID
GOL
GLYCEROL
PO4
PHOSPHATE ION
HOH
water
3OV6
PDB
experimental model
LAU
1
3
DAO
DAO
301
A
LAU
2
3
DAO
DAO
302
A
STE
3
4
STE
STE
303
A
GOL
1
5
GOL
GOL
304
A
GOL
3
5
GOL
GOL
305
A
GOL
4
5
GOL
GOL
306
A
PO4
11
6
PO4
PO4
307
A
PO4
12
6
PO4
PO4
308
A
GOL
2
5
GOL
GOL
101
B
HOH
30
7
HOH
HOH
401
A
HOH
70
7
HOH
HOH
402
A
HOH
76
7
HOH
HOH
403
A
HOH
114
7
HOH
HOH
404
A
HOH
67
7
HOH
HOH
405
A
HOH
84
7
HOH
HOH
406
A
HOH
73
7
HOH
HOH
407
A
HOH
5
7
HOH
HOH
408
A
HOH
19
7
HOH
HOH
409
A
HOH
79
7
HOH
HOH
410
A
HOH
12
7
HOH
HOH
411
A
HOH
107
7
HOH
HOH
412
A
HOH
94
7
HOH
HOH
413
A
HOH
115
7
HOH
HOH
414
A
HOH
111
7
HOH
HOH
415
A
HOH
74
7
HOH
HOH
416
A
HOH
78
7
HOH
HOH
417
A
HOH
93
7
HOH
HOH
418
A
HOH
89
7
HOH
HOH
419
A
HOH
112
7
HOH
HOH
420
A
HOH
44
7
HOH
HOH
421
A
HOH
83
7
HOH
HOH
422
A
HOH
14
7
HOH
HOH
423
A
HOH
38
7
HOH
HOH
424
A
HOH
1
7
HOH
HOH
425
A
HOH
8
7
HOH
HOH
426
A
HOH
46
7
HOH
HOH
427
A
HOH
10
7
HOH
HOH
428
A
HOH
45
7
HOH
HOH
429
A
HOH
68
7
HOH
HOH
430
A
HOH
62
7
HOH
HOH
431
A
HOH
3
7
HOH
HOH
432
A
HOH
42
7
HOH
HOH
433
A
HOH
4
7
HOH
HOH
434
A
HOH
50
7
HOH
HOH
435
A
HOH
13
7
HOH
HOH
436
A
HOH
92
7
HOH
HOH
437
A
HOH
27
7
HOH
HOH
438
A
HOH
65
7
HOH
HOH
439
A
HOH
57
7
HOH
HOH
440
A
HOH
25
7
HOH
HOH
441
A
HOH
32
7
HOH
HOH
442
A
HOH
23
7
HOH
HOH
443
A
HOH
88
7
HOH
HOH
444
A
HOH
82
7
HOH
HOH
445
A
HOH
80
7
HOH
HOH
446
A
HOH
61
7
HOH
HOH
447
A
HOH
33
7
HOH
HOH
448
A
HOH
87
7
HOH
HOH
449
A
HOH
29
7
HOH
HOH
450
A
HOH
21
7
HOH
HOH
451
A
HOH
35
7
HOH
HOH
452
A
HOH
106
7
HOH
HOH
453
A
HOH
85
7
HOH
HOH
454
A
HOH
51
7
HOH
HOH
455
A
HOH
28
7
HOH
HOH
456
A
HOH
40
7
HOH
HOH
457
A
HOH
55
7
HOH
HOH
458
A
HOH
36
7
HOH
HOH
459
A
HOH
31
7
HOH
HOH
460
A
HOH
58
7
HOH
HOH
461
A
HOH
6
7
HOH
HOH
462
A
HOH
20
7
HOH
HOH
463
A
HOH
108
7
HOH
HOH
464
A
HOH
71
7
HOH
HOH
465
A
HOH
86
7
HOH
HOH
466
A
HOH
22
7
HOH
HOH
467
A
HOH
24
7
HOH
HOH
468
A
HOH
97
7
HOH
HOH
469
A
HOH
104
7
HOH
HOH
470
A
HOH
113
7
HOH
HOH
471
A
HOH
103
7
HOH
HOH
472
A
HOH
69
7
HOH
HOH
473
A
HOH
39
7
HOH
HOH
474
A
HOH
72
7
HOH
HOH
475
A
HOH
77
7
HOH
HOH
476
A
HOH
105
7
HOH
HOH
477
A
HOH
102
7
HOH
HOH
201
B
HOH
101
7
HOH
HOH
202
B
HOH
91
7
HOH
HOH
203
B
HOH
9
7
HOH
HOH
204
B
HOH
2
7
HOH
HOH
205
B
HOH
43
7
HOH
HOH
206
B
HOH
63
7
HOH
HOH
207
B
HOH
17
7
HOH
HOH
208
B
HOH
64
7
HOH
HOH
209
B
HOH
18
7
HOH
HOH
210
B
HOH
41
7
HOH
HOH
211
B
HOH
52
7
HOH
HOH
212
B
HOH
54
7
HOH
HOH
213
B
HOH
15
7
HOH
HOH
214
B
HOH
75
7
HOH
HOH
215
B
HOH
98
7
HOH
HOH
216
B
HOH
7
7
HOH
HOH
217
B
HOH
11
7
HOH
HOH
218
B
HOH
16
7
HOH
HOH
219
B
HOH
34
7
HOH
HOH
220
B
HOH
66
7
HOH
HOH
221
B
HOH
109
7
HOH
HOH
222
B
HOH
48
7
HOH
HOH
223
B
HOH
59
7
HOH
HOH
224
B
HOH
100
7
HOH
HOH
225
B
HOH
56
7
HOH
HOH
226
B
HOH
116
7
HOH
HOH
227
B
HOH
53
7
HOH
HOH
228
B
HOH
47
7
HOH
HOH
229
B
HOH
26
7
HOH
HOH
230
B
HOH
49
7
HOH
HOH
231
B
HOH
99
7
HOH
HOH
232
B
HOH
110
7
HOH
HOH
233
B
HOH
96
7
HOH
HOH
234
B
HOH
60
7
HOH
HOH
235
B
HOH
90
7
HOH
HOH
236
B
HOH
81
7
HOH
HOH
237
B
HOH
95
7
HOH
HOH
238
B
HOH
37
7
HOH
HOH
239
B
GLU
9
n
1
GLU
9
A
HIS
10
n
2
HIS
10
A
VAL
11
n
3
VAL
11
A
SER
12
n
4
SER
12
A
PHE
13
n
5
PHE
13
A
HIS
14
n
6
HIS
14
A
VAL
15
n
7
VAL
15
A
ILE
16
n
8
ILE
16
A
GLN
17
n
9
GLN
17
A
ILE
18
n
10
ILE
18
A
PHE
19
n
11
PHE
19
A
SER
20
n
12
SER
20
A
PHE
21
n
13
PHE
21
A
VAL
22
n
14
VAL
22
A
ASN
23
n
15
ASN
23
A
GLN
24
n
16
GLN
24
A
SER
25
n
17
SER
25
A
TRP
26
n
18
TRP
26
A
ALA
27
n
19
ALA
27
A
ARG
28
n
20
ARG
28
A
GLY
29
n
21
GLY
29
A
GLN
30
n
22
GLN
30
A
GLY
31
n
23
GLY
31
A
SER
32
n
24
SER
32
A
GLY
33
n
25
GLY
33
A
TRP
34
n
26
TRP
34
A
LEU
35
n
27
LEU
35
A
ASP
36
n
28
ASP
36
A
GLU
37
n
29
GLU
37
A
LEU
38
n
30
LEU
38
A
GLN
39
n
31
GLN
39
A
THR
40
n
32
THR
40
A
HIS
41
n
33
HIS
41
A
GLY
42
n
34
GLY
42
A
TRP
43
n
35
TRP
43
A
ASP
44
n
36
ASP
44
A
SER
45
n
37
SER
45
A
GLU
46
n
38
GLU
46
A
SER
47
n
39
SER
47
A
GLY
48
n
40
GLY
48
A
THR
49
n
41
THR
49
A
ILE
50
n
42
ILE
50
A
ILE
51
n
43
ILE
51
A
PHE
52
n
44
PHE
52
A
LEU
53
n
45
LEU
53
A
HIS
54
n
46
HIS
54
A
ASN
55
n
47
ASN
55
A
TRP
56
n
48
TRP
56
A
SER
57
n
49
SER
57
A
LYS
58
n
50
LYS
58
A
GLY
59
n
51
GLY
59
A
ASN
60
n
52
ASN
60
A
PHE
61
n
53
PHE
61
A
SER
62
n
54
SER
62
A
ASN
63
n
55
ASN
63
A
GLU
64
n
56
GLU
64
A
GLU
65
n
57
GLU
65
A
LEU
66
n
58
LEU
66
A
SER
67
n
59
SER
67
A
ASP
68
n
60
ASP
68
A
LEU
69
n
61
LEU
69
A
GLU
70
n
62
GLU
70
A
LEU
71
n
63
LEU
71
A
LEU
72
n
64
LEU
72
A
PHE
73
n
65
PHE
73
A
ARG
74
n
66
ARG
74
A
PHE
75
n
67
PHE
75
A
TYR
76
n
68
TYR
76
A
LEU
77
n
69
LEU
77
A
PHE
78
n
70
PHE
78
A
GLY
79
n
71
GLY
79
A
LEU
80
n
72
LEU
80
A
THR
81
n
73
THR
81
A
ARG
82
n
74
ARG
82
A
GLU
83
n
75
GLU
83
A
ILE
84
n
76
ILE
84
A
GLN
85
n
77
GLN
85
A
ASP
86
n
78
ASP
86
A
HIS
87
n
79
HIS
87
A
ALA
88
n
80
ALA
88
A
SER
89
n
81
SER
89
A
GLN
90
n
82
GLN
90
A
ASP
91
n
83
ASP
91
A
TYR
92
n
84
TYR
92
A
SER
93
n
85
SER
93
A
LYS
94
n
86
LYS
94
A
TYR
95
n
87
TYR
95
A
PRO
96
n
88
PRO
96
A
PHE
97
n
89
PHE
97
A
GLU
98
n
90
GLU
98
A
VAL
99
n
91
VAL
99
A
GLN
100
n
92
GLN
100
A
VAL
101
n
93
VAL
101
A
LYS
102
n
94
LYS
102
A
ALA
103
n
95
ALA
103
A
GLY
104
n
96
GLY
104
A
CYS
105
n
97
CYS
105
A
GLU
106
n
98
GLU
106
A
LEU
107
n
99
LEU
107
A
HIS
108
n
100
HIS
108
A
SER
109
n
101
SER
109
A
GLY
110
n
102
GLY
110
A
LYS
111
n
103
LYS
111
A
SER
112
n
104
SER
112
A
PRO
113
n
105
PRO
113
A
GLU
114
n
106
GLU
114
A
GLY
115
n
107
GLY
115
A
PHE
116
n
108
PHE
116
A
PHE
117
n
109
PHE
117
A
GLN
118
n
110
GLN
118
A
VAL
119
n
111
VAL
119
A
ALA
120
n
112
ALA
120
A
PHE
121
n
113
PHE
121
A
ASN
122
n
114
ASN
122
A
GLY
123
n
115
GLY
123
A
LEU
124
n
116
LEU
124
A
ASP
125
n
117
ASP
125
A
LEU
126
n
118
LEU
126
A
LEU
127
n
119
LEU
127
A
SER
128
n
120
SER
128
A
PHE
129
n
121
PHE
129
A
GLN
130
n
122
GLN
130
A
ASN
131
n
123
ASN
131
A
THR
132
n
124
THR
132
A
THR
133
n
125
THR
133
A
TRP
134
n
126
TRP
134
A
VAL
135
n
127
VAL
135
A
PRO
136
n
128
PRO
136
A
SER
137
n
129
SER
137
A
PRO
138
n
130
PRO
138
A
GLY
139
n
131
GLY
139
A
CYS
140
n
132
CYS
140
A
GLY
141
n
133
GLY
141
A
SER
142
n
134
SER
142
A
LEU
143
n
135
LEU
143
A
ALA
144
n
136
ALA
144
A
GLN
145
n
137
GLN
145
A
SER
146
n
138
SER
146
A
VAL
147
n
139
VAL
147
A
CYS
148
n
140
CYS
148
A
HIS
149
n
141
HIS
149
A
LEU
150
n
142
LEU
150
A
LEU
151
n
143
LEU
151
A
ASN
152
n
144
ASN
152
A
HIS
153
n
145
HIS
153
A
GLN
154
n
146
GLN
154
A
TYR
155
n
147
TYR
155
A
GLU
156
n
148
GLU
156
A
GLY
157
n
149
GLY
157
A
VAL
158
n
150
VAL
158
A
THR
159
n
151
THR
159
A
GLU
160
n
152
GLU
160
A
THR
161
n
153
THR
161
A
VAL
162
n
154
VAL
162
A
TYR
163
n
155
TYR
163
A
ASN
164
n
156
ASN
164
A
LEU
165
n
157
LEU
165
A
ILE
166
n
158
ILE
166
A
ARG
167
n
159
ARG
167
A
SER
168
n
160
SER
168
A
THR
169
n
161
THR
169
A
CYS
170
n
162
CYS
170
A
PRO
171
n
163
PRO
171
A
ARG
172
n
164
ARG
172
A
PHE
173
n
165
PHE
173
A
LEU
174
n
166
LEU
174
A
LEU
175
n
167
LEU
175
A
GLY
176
n
168
GLY
176
A
LEU
177
n
169
LEU
177
A
LEU
178
n
170
LEU
178
A
ASP
179
n
171
ASP
179
A
ALA
180
n
172
ALA
180
A
GLY
181
n
173
GLY
181
A
LYS
182
n
174
LYS
182
A
MET
183
n
175
MET
183
A
TYR
184
n
176
TYR
184
A
VAL
185
n
177
VAL
185
A
HIS
186
n
178
HIS
186
A
ARG
187
n
179
ARG
187
A
GLN
188
n
180
GLN
188
A
VAL
189
n
181
VAL
189
A
LYS
190
n
182
LYS
190
A
PRO
191
n
183
PRO
191
A
GLU
192
n
184
GLU
192
A
ALA
193
n
185
ALA
193
A
TRP
194
n
186
TRP
194
A
LEU
195
n
187
LEU
195
A
SER
196
n
188
SER
196
A
SER
197
n
189
SER
197
A
GLY
198
n
190
GLY
198
A
PRO
199
n
191
PRO
199
A
SER
200
n
192
SER
200
A
PRO
201
n
193
PRO
201
A
GLY
202
n
194
GLY
202
A
PRO
203
n
195
PRO
203
A
GLY
204
n
196
GLY
204
A
ARG
205
n
197
ARG
205
A
LEU
206
n
198
LEU
206
A
GLN
207
n
199
GLN
207
A
LEU
208
n
200
LEU
208
A
VAL
209
n
201
VAL
209
A
CYS
210
n
202
CYS
210
A
HIS
211
n
203
HIS
211
A
VAL
212
n
204
VAL
212
A
SER
213
n
205
SER
213
A
GLY
214
n
206
GLY
214
A
PHE
215
n
207
PHE
215
A
TYR
216
n
208
TYR
216
A
PRO
217
n
209
PRO
217
A
LYS
218
n
210
LYS
218
A
PRO
219
n
211
PRO
219
A
VAL
220
n
212
VAL
220
A
TRP
221
n
213
TRP
221
A
VAL
222
n
214
VAL
222
A
MET
223
n
215
MET
223
A
TRP
224
n
216
TRP
224
A
MET
225
n
217
MET
225
A
ARG
226
n
218
ARG
226
A
GLY
227
n
219
GLY
227
A
GLU
228
n
220
GLU
228
A
GLN
229
n
221
GLN
229
A
GLU
230
n
222
GLU
230
A
GLN
231
n
223
GLN
231
A
GLN
232
n
224
GLN
232
A
GLY
233
n
225
GLY
233
A
THR
234
n
226
THR
234
A
GLN
235
n
227
GLN
235
A
LEU
236
n
228
LEU
236
A
GLY
237
n
229
GLY
237
A
ASP
238
n
230
ASP
238
A
ILE
239
n
231
ILE
239
A
LEU
240
n
232
LEU
240
A
PRO
241
n
233
PRO
241
A
ASN
242
n
234
ASN
242
A
ALA
243
n
235
ALA
243
A
ASN
244
n
236
ASN
244
A
TRP
245
n
237
TRP
245
A
THR
246
n
238
THR
246
A
TRP
247
n
239
TRP
247
A
TYR
248
n
240
TYR
248
A
LEU
249
n
241
LEU
249
A
ARG
250
n
242
ARG
250
A
ALA
251
n
243
ALA
251
A
THR
252
n
244
THR
252
A
LEU
253
n
245
LEU
253
A
ASP
254
n
246
ASP
254
A
VAL
255
n
247
VAL
255
A
ALA
256
n
248
ALA
256
A
ASP
257
n
249
ASP
257
A
GLY
258
n
250
GLY
258
A
GLU
259
n
251
GLU
259
A
ALA
260
n
252
ALA
260
A
ALA
261
n
253
ALA
261
A
GLY
262
n
254
GLY
262
A
LEU
263
n
255
LEU
263
A
SER
264
n
256
SER
264
A
CYS
265
n
257
CYS
265
A
ARG
266
n
258
ARG
266
A
VAL
267
n
259
VAL
267
A
LYS
268
n
260
LYS
268
A
HIS
269
n
261
HIS
269
A
SER
270
n
262
SER
270
A
SER
271
n
263
SER
271
A
LEU
272
n
264
LEU
272
A
GLU
273
n
265
GLU
273
A
GLY
274
n
266
GLY
274
A
GLN
275
n
267
GLN
275
A
ASP
276
n
268
ASP
276
A
ILE
277
n
269
ILE
277
A
ILE
278
n
270
ILE
278
A
LEU
279
n
271
LEU
279
A
TYR
280
n
272
TYR
280
A
TRP
281
n
273
TRP
281
A
GLY
282
n
274
GLY
282
A
PRO
283
n
275
PRO
283
A
GLY
284
n
276
GLY
284
A
SER
285
n
277
SER
285
A
GLY
286
n
278
GLY
286
A
GLY
287
n
279
GLY
287
A
GLY
288
n
280
GLY
288
A
LEU
289
n
281
LEU
289
A
MET
1
n
1
MET
1
B
ILE
2
n
2
ILE
2
B
GLN
3
n
3
GLN
3
B
ARG
4
n
4
ARG
4
B
THR
5
n
5
THR
5
B
PRO
6
n
6
PRO
6
B
LYS
7
n
7
LYS
7
B
ILE
8
n
8
ILE
8
B
GLN
9
n
9
GLN
9
B
VAL
10
n
10
VAL
10
B
TYR
11
n
11
TYR
11
B
SER
12
n
12
SER
12
B
ARG
13
n
13
ARG
13
B
HIS
14
n
14
HIS
14
B
PRO
15
n
15
PRO
15
B
ALA
16
n
16
ALA
16
B
GLU
17
n
17
GLU
17
B
ASN
18
n
18
ASN
18
B
GLY
19
n
19
GLY
19
B
LYS
20
n
20
LYS
20
B
SER
21
n
21
SER
21
B
ASN
22
n
22
ASN
22
B
PHE
23
n
23
PHE
23
B
LEU
24
n
24
LEU
24
B
ASN
25
n
25
ASN
25
B
CYS
26
n
26
CYS
26
B
TYR
27
n
27
TYR
27
B
VAL
28
n
28
VAL
28
B
SER
29
n
29
SER
29
B
GLY
30
n
30
GLY
30
B
PHE
31
n
31
PHE
31
B
HIS
32
n
32
HIS
32
B
PRO
33
n
33
PRO
33
B
SER
34
n
34
SER
34
B
ASP
35
n
35
ASP
35
B
ILE
36
n
36
ILE
36
B
GLU
37
n
37
GLU
37
B
VAL
38
n
38
VAL
38
B
ASP
39
n
39
ASP
39
B
LEU
40
n
40
LEU
40
B
LEU
41
n
41
LEU
41
B
LYS
42
n
42
LYS
42
B
ASN
43
n
43
ASN
43
B
GLY
44
n
44
GLY
44
B
GLU
45
n
45
GLU
45
B
ARG
46
n
46
ARG
46
B
ILE
47
n
47
ILE
47
B
GLU
48
n
48
GLU
48
B
LYS
49
n
49
LYS
49
B
VAL
50
n
50
VAL
50
B
GLU
51
n
51
GLU
51
B
HIS
52
n
52
HIS
52
B
SER
53
n
53
SER
53
B
ASP
54
n
54
ASP
54
B
LEU
55
n
55
LEU
55
B
SER
56
n
56
SER
56
B
PHE
57
n
57
PHE
57
B
SER
58
n
58
SER
58
B
LYS
59
n
59
LYS
59
B
ASP
60
n
60
ASP
60
B
TRP
61
n
61
TRP
61
B
SER
62
n
62
SER
62
B
PHE
63
n
63
PHE
63
B
TYR
64
n
64
TYR
64
B
LEU
65
n
65
LEU
65
B
LEU
66
n
66
LEU
66
B
TYR
67
n
67
TYR
67
B
TYR
68
n
68
TYR
68
B
THR
69
n
69
THR
69
B
GLU
70
n
70
GLU
70
B
PHE
71
n
71
PHE
71
B
THR
72
n
72
THR
72
B
PRO
73
n
73
PRO
73
B
THR
74
n
74
THR
74
B
GLU
75
n
75
GLU
75
B
LYS
76
n
76
LYS
76
B
ASP
77
n
77
ASP
77
B
GLU
78
n
78
GLU
78
B
TYR
79
n
79
TYR
79
B
ALA
80
n
80
ALA
80
B
CYS
81
n
81
CYS
81
B
ARG
82
n
82
ARG
82
B
VAL
83
n
83
VAL
83
B
ASN
84
n
84
ASN
84
B
HIS
85
n
85
HIS
85
B
VAL
86
n
86
VAL
86
B
THR
87
n
87
THR
87
B
LEU
88
n
88
LEU
88
B
SER
89
n
89
SER
89
B
GLN
90
n
90
GLN
90
B
PRO
91
n
91
PRO
91
B
LYS
92
n
92
LYS
92
B
ILE
93
n
93
ILE
93
B
VAL
94
n
94
VAL
94
B
LYS
95
n
95
LYS
95
B
TRP
96
n
96
TRP
96
B
ASP
97
n
97
ASP
97
B
ARG
98
n
98
ARG
98
B
ASP
99
n
99
ASP
99
B
0.9753
-0.1581
1.2913
1.4656
-0.3572
2.1713
0.0195
0.0068
0.0116
0.0310
-0.0464
-0.0254
0.0404
0.0162
0.0268
0.0077
0.0022
0.0037
0.0086
0.0008
0.0038
refined
-5.8960
29.5990
0.4630
X-RAY DIFFRACTION
3.0729
1.6900
-2.0000
1.4151
-0.9066
1.4259
0.1111
-0.1855
0.0659
0.0428
-0.0794
0.0621
-0.0475
0.0746
-0.0317
0.0581
-0.0219
-0.0604
0.0793
-0.0252
0.0980
refined
-38.8320
10.8050
6.2130
X-RAY DIFFRACTION
2.6578
1.1131
0.9960
1.4471
0.4000
1.8345
0.1014
0.0432
-0.3914
0.0371
0.0874
-0.1111
0.2568
-0.0323
-0.1888
0.0425
0.0038
-0.0367
0.0243
-0.0282
0.1037
refined
-17.5230
4.2720
2.9860
X-RAY DIFFRACTION
A
6
A
184
X-RAY DIFFRACTION
1
A
185
A
285
X-RAY DIFFRACTION
2
B
1
B
99
X-RAY DIFFRACTION
3
1
0.839
2
0.161
software_defined_assembly
PISA
2
dimeric
6350
-21
19420
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
49
A
O
THR
41
A
N
ASP
44
A
N
ASP
36
A
O
LEU
38
A
O
LEU
30
A
N
LEU
35
A
N
LEU
27
A
O
ARG
28
A
O
ARG
20
A
N
SER
20
A
N
SER
12
A
N
PHE
19
A
N
PHE
11
A
O
VAL
99
A
O
VAL
91
A
N
GLY
104
A
N
GLY
96
A
O
PHE
116
A
O
PHE
108
A
N
VAL
119
A
N
VAL
111
A
O
LEU
126
A
O
LEU
118
A
N
SER
128
A
N
SER
120
A
O
VAL
135
A
O
VAL
127
A
N
TRP
194
A
N
TRP
186
A
O
HIS
211
A
O
HIS
203
A
N
LEU
208
A
N
LEU
200
A
O
LEU
253
A
O
LEU
245
A
O
THR
252
A
O
THR
244
A
N
GLN
235
A
N
GLN
227
A
N
TRP
194
A
N
TRP
186
A
O
HIS
211
A
O
HIS
203
A
N
LEU
208
A
N
LEU
200
A
O
LEU
253
A
O
LEU
245
A
O
TYR
248
A
O
TYR
240
A
N
LEU
240
A
N
LEU
232
A
O
GLN
229
A
O
GLN
221
A
N
ARG
226
A
N
ARG
218
A
N
TRP
221
A
N
TRP
213
A
O
LYS
268
A
O
LYS
260
A
N
VAL
267
A
N
VAL
259
A
O
ILE
277
A
O
ILE
269
B
N
LYS
7
B
N
LYS
7
B
O
SER
29
B
O
SER
29
B
N
CYS
26
B
N
CYS
26
B
O
TYR
67
B
O
TYR
67
B
O
TYR
68
B
O
TYR
68
B
N
GLU
51
B
N
GLU
51
B
N
LYS
7
B
N
LYS
7
B
O
SER
29
B
O
SER
29
B
N
CYS
26
B
N
CYS
26
B
O
TYR
67
B
O
TYR
67
B
O
TYR
64
B
O
TYR
64
B
N
SER
56
B
N
SER
56
B
O
GLU
45
B
O
GLU
45
B
N
LYS
42
B
N
LYS
42
B
N
GLU
37
B
N
GLU
37
B
O
ASN
84
B
O
ASN
84
B
N
CYS
81
B
N
CYS
81
B
O
VAL
94
B
O
VAL
94
1
A
A
O
O
HOH
HOH
414
453
0.86
1
A
A
O
O
HOH
HOH
403
413
1.46
1
A
A
O
O
HOH
HOH
470
477
1.64
1
B
B
O
O
HOH
HOH
218
229
1.73
1
A
A
OE1
OH
GLN
TYR
24
92
2.17
A
1
A
A
TRP
GLY
281
282
131.45
1
6.30
0.90
118.30
124.60
A
A
A
CB
CG
OD1
ASP
ASP
ASP
91
91
91
N
1
8.13
1.10
114.20
122.33
A
A
A
CA
CB
SG
CYS
CYS
CYS
140
140
140
N
1
-15.52
2.50
113.10
97.58
A
A
A
N
CA
C
GLY
GLY
GLY
282
282
282
N
1
-3.30
0.50
120.30
117.00
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
13
13
13
N
1
A
A
CB
CG
TRP
TRP
34
34
-0.142
0.018
1.498
1.356
N
1
A
A
CD
OE2
GLU
GLU
37
37
0.088
0.011
1.252
1.340
N
1
A
A
CD
OE2
GLU
GLU
65
65
0.075
0.011
1.252
1.327
N
1
B
B
CG
CD1
TRP
TRP
61
61
0.090
0.014
1.363
1.453
N
1
A
SER
32
-170.83
149.40
1
A
ASP
36
52.55
-116.02
1
A
SER
109
-32.96
122.83
1
A
ASN
131
-123.84
-66.82
1
A
GLN
154
-151.03
45.61
1
A
TYR
155
-159.83
79.87
1
A
SER
168
-129.87
-51.88
1
A
SER
285
-29.93
-57.71
1
B
ASN
18
-34.65
132.35
1
B
ASN
43
36.64
45.11
61.771
-8.85
0.00
0.00
-8.85
0.00
17.70
0.965
0.938
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.20006
0.15453
0.15823
2.40
28.34
1992
22416
8.2
97.55
7.852
0.103
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.048
0.040
0.80
0.80
1.20
3OV6
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.40
28.34
116
3250
82
0
3052
0.028
0.019
3246
0.006
0.020
2976
2.372
1.946
4394
1.188
3.000
6869
8.214
5.000
384
34.591
24.025
159
15.619
15.000
503
18.338
15.000
15
0.147
0.200
448
0.014
0.021
3654
0.001
0.020
801
4.608
5.119
1524
4.603
5.118
1523
6.138
7.657
1903
6.136
7.658
1904
5.752
5.580
1719
5.700
5.575
1711
7.931
8.151
2476
9.664
41.084
3523
9.660
40.981
3505
0.318
0.219
2.462
118
1369
20
83.17
52.941
0.998
2.400
28.3400
5C9J
46442
-4.000
-3.000
0.054
0.066
1.063
1
15.39
141258
3.04
97.800
0.622
0.599
2.400
2.460
1.780
6330
3469
2946
0.756
1
0
84.900
0.689
0.507
2.460
2.530
2.170
7417
3421
3127
0.633
1
0
91.400
0.792
0.401
2.530
2.600
3.060
9126
3362
3298
0.492
1
0
98.100
0.846
0.340
2.600
2.680
3.960
10163
3249
3226
0.411
1
0
99.300
0.903
0.272
2.680
2.770
4.890
10144
3134
3132
0.327
1
0
99.900
0.938
0.205
2.770
2.870
6.260
9895
3053
3049
0.247
1
0
99.900
0.961
0.160
2.870
2.980
7.990
9311
2874
2873
0.192
1
0
100.000
0.976
0.123
2.980
3.100
10.140
9189
2841
2838
0.148
1
0
99.900
0.987
0.087
3.100
3.240
13.860
8832
2731
2728
0.105
1
0
99.900
0.992
0.065
3.240
3.390
17.740
8159
2529
2528
0.079
1
0
100.000
0.995
0.052
3.390
3.580
21.560
7778
2492
2460
0.062
1
0
98.700
0.996
0.043
3.580
3.800
25.210
7243
2291
2276
0.051
1
0
99.300
0.997
0.036
3.800
4.060
28.950
6817
2191
2171
0.044
1
0
99.100
0.998
0.031
4.060
4.380
31.870
6484
2038
2033
0.037
1
0
99.800
0.998
0.028
4.380
4.800
35.070
5884
1865
1858
0.034
1
0
99.600
0.998
0.028
4.800
5.370
34.820
5373
1698
1693
0.034
1
0
99.700
0.997
0.031
5.370
6.200
32.880
4620
1471
1468
0.037
1
0
99.800
0.997
0.031
6.200
7.590
33.270
3863
1269
1262
0.037
1
0
99.400
0.999
0.022
7.590
10.730
39.450
3143
980
979
0.026
1
0
99.900
0.999
0.019
10.730
40.520
1487
524
497
0.023
1
0
94.800
refinement
REFMAC
5.8.0123
model building
Coot
0.8.1
phasing
PHASER
1.8.4
data scaling
XSCALE
03.11.14
data reduction
XDS
03.11.14
Human CD1c with ligands in A' and F' channel
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
5
N
N
7
N
N
7
N
N
A
SER
62
A
SER
54
HELX_P
A
SER
89
A
SER
81
1
AA1
28
A
GLN
90
A
GLN
82
HELX_P
A
TYR
95
A
TYR
87
5
AA2
6
A
GLY
141
A
GLY
133
HELX_P
A
GLN
154
A
GLN
146
1
AA3
14
A
TYR
155
A
TYR
147
HELX_P
A
SER
168
A
SER
160
1
AA4
14
A
SER
168
A
SER
160
HELX_P
A
HIS
186
A
HIS
178
1
AA5
19
A
HIS
269
A
HIS
261
HELX_P
A
GLU
273
A
GLU
265
5
AA6
5
disulf
2.398
A
CYS
105
A
SG
CYS
97
1_555
A
CYS
170
A
SG
CYS
162
1_555
disulf
2.088
A
CYS
210
A
SG
CYS
202
1_555
A
CYS
265
A
SG
CYS
257
1_555
disulf
2.028
B
CYS
26
B
SG
CYS
26
1_555
B
CYS
81
B
SG
CYS
81
1_555
IMMUNE SYSTEM
Antigen Presentation, CD1, human CD1, MHC-like, Immunology, lipid antigen, immune system
A
TYR
95
A
TYR
87
1
A
PRO
96
A
PRO
88
-9.15
A
TYR
216
A
TYR
208
1
A
PRO
217
A
PRO
209
2.27
A
GLY
282
A
GLY
274
1
A
PRO
283
A
PRO
275
-11.32
B
HIS
32
B
HIS
32
1
B
PRO
33
B
PRO
33
-1.19
CD1C_HUMAN
UNP
1
24
P29017
EHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDSESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHA
SQDYSKYPFEVQVKAGCELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNLIRS
TCPRFLLGLLDAGKMYVHRQ
CD1B_HUMAN
UNP
1
203
P29016
VKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVK
HSSLEGQDIILYW
B2MG_HUMAN
UNP
2
21
P61769
IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC
RVNHVTLSQPKIVKWDRD
24
203
5C9J
9
188
P29017
A
1
1
180
203
295
5C9J
189
281
P29016
A
2
181
273
21
118
5C9J
2
99
P61769
B
3
2
99
2
expression tag
GLY
282
5C9J
A
P29016
UNP
274
2
expression tag
PRO
283
5C9J
A
P29016
UNP
275
2
expression tag
GLY
284
5C9J
A
P29016
UNP
276
2
expression tag
SER
285
5C9J
A
P29016
UNP
277
2
expression tag
GLY
286
5C9J
A
P29016
UNP
278
2
expression tag
GLY
287
5C9J
A
P29016
UNP
279
2
expression tag
GLY
288
5C9J
A
P29016
UNP
280
2
expression tag
LEU
289
5C9J
A
P29016
UNP
281
3
initiating methionine
MET
1
5C9J
B
P61769
UNP
1
8
4
4
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
49
A
THR
41
A
PHE
52
A
PHE
44
A
LEU
38
A
LEU
30
A
ASP
44
A
ASP
36
A
TRP
26
A
TRP
18
A
LEU
35
A
LEU
27
A
HIS
10
A
HIS
2
A
ASN
23
A
ASN
15
A
PHE
97
A
PHE
89
A
HIS
108
A
HIS
100
A
GLU
114
A
GLU
106
A
PHE
121
A
PHE
113
A
LEU
124
A
LEU
116
A
PHE
129
A
PHE
121
A
TRP
134
A
TRP
126
A
PRO
136
A
PRO
128
A
GLU
192
A
GLU
184
A
GLY
198
A
GLY
190
A
ARG
205
A
ARG
197
A
PHE
215
A
PHE
207
A
TRP
247
A
TRP
239
A
ALA
256
A
ALA
248
A
GLN
235
A
GLN
227
A
LEU
236
A
LEU
228
A
GLU
192
A
GLU
184
A
GLY
198
A
GLY
190
A
ARG
205
A
ARG
197
A
PHE
215
A
PHE
207
A
TRP
247
A
TRP
239
A
ALA
256
A
ALA
248
A
LEU
240
A
LEU
232
A
PRO
241
A
PRO
233
A
GLN
229
A
GLN
221
A
GLU
230
A
GLU
222
A
TRP
221
A
TRP
213
A
ARG
226
A
ARG
218
A
SER
264
A
SER
256
A
LYS
268
A
LYS
260
A
ILE
277
A
ILE
269
A
TYR
280
A
TYR
272
B
LYS
7
B
LYS
7
B
SER
12
B
SER
12
B
ASN
22
B
ASN
22
B
PHE
31
B
PHE
31
B
PHE
63
B
PHE
63
B
PHE
71
B
PHE
71
B
GLU
51
B
GLU
51
B
HIS
52
B
HIS
52
B
LYS
7
B
LYS
7
B
SER
12
B
SER
12
B
ASN
22
B
ASN
22
B
PHE
31
B
PHE
31
B
PHE
63
B
PHE
63
B
PHE
71
B
PHE
71
B
SER
56
B
SER
56
B
PHE
57
B
PHE
57
B
GLU
45
B
GLU
45
B
ARG
46
B
ARG
46
B
GLU
37
B
GLU
37
B
LYS
42
B
LYS
42
B
TYR
79
B
TYR
79
B
ASN
84
B
ASN
84
B
LYS
92
B
LYS
92
B
LYS
95
B
LYS
95
binding site for residue DAO A 301
A
DAO
301
Software
3
binding site for residue DAO A 302
A
DAO
302
Software
2
binding site for residue STE A 303
A
STE
303
Software
5
binding site for residue GOL A 304
A
GOL
304
Software
5
binding site for residue GOL A 305
A
GOL
305
Software
5
binding site for residue GOL A 306
A
GOL
306
Software
3
binding site for residue PO4 A 307
A
PO4
307
Software
6
binding site for residue PO4 A 308
A
PO4
308
Software
6
binding site for residue GOL B 101
B
GOL
101
Software
4
A
GLU
83
A
GLU
75
3
1_555
A
HIS
87
A
HIS
79
3
1_555
A
VAL
147
A
VAL
139
3
1_555
A
HIS
87
A
HIS
79
2
1_555
A
PHE
121
A
PHE
113
2
1_555
A
PHE
73
A
PHE
65
5
1_555
A
TYR
76
A
TYR
68
5
1_555
A
PHE
117
A
PHE
109
5
1_555
A
LEU
165
A
LEU
157
5
1_555
A
PHE
173
A
PHE
165
5
1_555
A
GLY
110
A
GLY
102
5
1_555
A
LYS
111
A
LYS
103
5
1_555
A
LEU
195
A
LEU
187
5
4_565
A
TYR
280
A
TYR
272
5
4_565
A
GLY
287
A
GLY
279
5
4_565
A
ASN
242
A
ASN
234
5
1_555
A
ALA
243
A
ALA
235
5
1_555
A
TRP
245
A
TRP
237
5
1_555
A
HOH
402
L
HOH
5
1_555
B
SER
53
B
SER
53
5
1_555
A
SER
20
A
SER
12
3
1_555
A
VAL
22
A
VAL
14
3
1_555
A
ARG
28
A
ARG
20
3
1_555
A
ARG
28
A
ARG
20
6
1_555
A
GLY
29
A
GLY
21
6
1_555
A
TRP
43
A
TRP
35
6
1_555
A
SER
45
A
SER
37
6
1_555
A
HOH
408
L
HOH
6
1_555
A
HOH
421
L
HOH
6
1_555
A
HIS
14
A
HIS
6
6
1_555
A
TRP
34
A
TRP
26
6
1_555
A
ASP
36
A
ASP
28
6
1_555
B
SER
56
B
SER
56
6
1_555
B
PHE
57
B
PHE
57
6
1_555
B
TYR
64
B
TYR
64
6
1_555
B
GLY
44
B
GLY
44
4
1_555
B
GLU
45
B
GLU
45
4
1_555
B
ARG
46
B
ARG
46
4
1_555
B
ARG
82
B
ARG
82
4
1_555
152
P 31 2 1