0.017350 0.000000 0.000000 0.000000 0.017350 0.000000 0.000000 0.000000 0.008716 0.00000 0.00000 0.00000 Gibson, R.P. Shore, E. Kershaw, N. Awais, M. Javed, A. Latawiec, D. Pandalaneni, S. Wen, L. Berry, N. O'Neill, P. Sutton, R. Lian, L.Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.638 57.638 114.735 C17 H19 N3 O3 313.351 ethyl N-{[3-(pyridin-4-yl)benzyl]carbamoyl}glycinate non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer C6 H14 O4 150.173 TRIETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N O N 4 N N N 5 N C N 6 N O Y 7 N N N 8 N C N 9 N O N 10 N C N 11 N C N 12 N C Y 13 N C Y 14 N C Y 15 N C Y 16 N C Y 17 N C Y 18 N C Y 19 N C Y 20 N C Y 21 N C Y 22 N C Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N N N 44 S C N 45 N C N 46 N O N 47 N C N 48 N O N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N N N 57 S C N 58 N C N 59 N O N 60 N C N 61 N C N 62 N C N 63 N N N 64 N C N 65 N N N 66 N N N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N N N 84 S C N 85 N C N 86 N O N 87 N C N 88 N C N 89 N O N 90 N N N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N N N 101 S C N 102 N C N 103 N O N 104 N C N 105 N C N 106 N O N 107 N O N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 R C N 118 N C N 119 N O N 120 N C N 121 N S N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N C N 131 N O N 132 N C N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N O N 148 N N N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N O N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 N C N 181 N C N 182 N O N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C Y 194 N C Y 195 N N Y 196 N C Y 197 N C Y 198 N N N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N O N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 S C N 218 N C N 219 N C N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N K N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C N 241 N C N 242 N C N 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N N N 259 S C N 260 N C N 261 N O N 262 N C N 263 N C N 264 N C N 265 N C N 266 N N N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N S N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N O N 304 N C N 305 N C N 306 N O N 307 N C N 308 N C N 309 N O N 310 N C N 311 N C N 312 N O N 313 N C N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N C N 335 N O N 336 N C N 337 N O N 338 N C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 N C N 386 N C N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 R C N 417 N O N 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N N N 430 S C N 431 N C N 432 N O N 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N N Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C Y 466 N C N 467 N O N 468 N O N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N N N 481 S C N 482 N C N 483 N O N 484 N C N 485 N C N 486 N C N 487 N O N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing Y 8 N doub Y 9 N sing N 10 N sing N 11 N sing Y 12 N sing Y 13 N doub N 14 N doub N 15 N sing Y 16 N doub N 17 N sing Y 18 N sing Y 19 N doub Y 20 N sing Y 21 N sing Y 22 N doub Y 23 N doub Y 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N doub N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing Y 192 N sing Y 193 N doub Y 194 N doub N 195 N sing Y 196 N sing N 197 N sing Y 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N doub N 358 N sing Y 359 N doub N 360 N sing Y 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N doub N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing Y 422 N doub Y 423 N sing Y 424 N sing N 425 N sing Y 426 N doub Y 427 N sing Y 428 N sing N 429 N sing Y 430 N sing Y 431 N doub N 432 N sing Y 433 N doub N 434 N sing Y 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing Y 450 N doub Y 451 N sing Y 452 N sing N 453 N sing Y 454 N doub N 455 N sing Y 456 N doub N 457 N sing Y 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing To Be Published 0353 Human Cyclophilin D Complexed with Inhibitor. 10.2210/pdb5cbu/pdb pdb_00005cbu 100 1 PIXEL 2013-04-20 PSI PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.8856 1.0 PROXIMA 1 SOLEIL 0.8856 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 17783.322 Peptidyl-prolyl cis-trans isomerase F, mitochondrial 5.2.1.8 UNP residues 44-207 K133I 1 man polymer 39.098 POTASSIUM ION 1 syn non-polymer 194.226 TETRAETHYLENE GLYCOL 1 syn non-polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 150.173 TRIETHYLENE GLYCOL 1 syn non-polymer 313.351 ethyl N-{[3-(pyridin-4-yl)benzyl]carbamoyl}glycinate 2 syn non-polymer 18.015 water 132 nat water PPIase F,Cyclophilin D,CypD,Cyclophilin F,Mitochondrial cyclophilin,CyP-M,Rotamase F, Cyclophilin D no no MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYG SRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITD CGQLS MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYG SRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITD CGQLS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 165 PPIF, CYP3 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) Biological sequence pet28b 2.68 54.09 VAPOR DIFFUSION, SITTING DROP 9 4M potassium formate, 0.1M BIS-TRIS propane pH 9, 2% w/v PEG2000mme 294 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Data collection Database references Refinement description 1 0 2016-07-20 1 1 2024-01-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession N RCSB Y PDBE 2015-07-01 REL REL K POTASSIUM ION PG4 TETRAETHYLENE GLYCOL EDO 1,2-ETHANEDIOL PGE TRIETHYLENE GLYCOL 4ZM ethyl N-{[3-(pyridin-4-yl)benzyl]carbamoyl}glycinate HOH water 2BIT PDB experimental model K 1 2 K K 201 A PG4 1 3 PG4 PG4 202 A EDO 2 4 EDO EDO 203 A PGE 1 5 PGE PGE 204 A E19 1 6 4ZM 4ZM 205 A E19 2 6 4ZM 4ZM 206 A HOH 109 7 HOH HOH 301 A HOH 110 7 HOH HOH 302 A HOH 130 7 HOH HOH 303 A HOH 14 7 HOH HOH 304 A HOH 82 7 HOH HOH 305 A HOH 1 7 HOH HOH 306 A HOH 113 7 HOH HOH 307 A HOH 20 7 HOH HOH 308 A HOH 19 7 HOH HOH 309 A HOH 112 7 HOH HOH 310 A HOH 41 7 HOH HOH 311 A HOH 40 7 HOH HOH 312 A HOH 118 7 HOH HOH 313 A HOH 61 7 HOH HOH 314 A HOH 111 7 HOH HOH 315 A HOH 107 7 HOH HOH 316 A HOH 58 7 HOH HOH 317 A HOH 129 7 HOH HOH 318 A HOH 52 7 HOH HOH 319 A HOH 34 7 HOH HOH 320 A HOH 27 7 HOH HOH 321 A HOH 87 7 HOH HOH 322 A HOH 8 7 HOH HOH 323 A HOH 21 7 HOH HOH 324 A HOH 75 7 HOH HOH 325 A HOH 68 7 HOH HOH 326 A HOH 92 7 HOH HOH 327 A HOH 26 7 HOH HOH 328 A HOH 72 7 HOH HOH 329 A HOH 13 7 HOH HOH 330 A HOH 7 7 HOH HOH 331 A HOH 67 7 HOH HOH 332 A HOH 122 7 HOH HOH 333 A HOH 94 7 HOH HOH 334 A HOH 35 7 HOH HOH 335 A HOH 5 7 HOH HOH 336 A HOH 12 7 HOH HOH 337 A HOH 69 7 HOH HOH 338 A HOH 80 7 HOH HOH 339 A HOH 15 7 HOH HOH 340 A HOH 51 7 HOH HOH 341 A HOH 18 7 HOH HOH 342 A HOH 93 7 HOH HOH 343 A HOH 39 7 HOH HOH 344 A HOH 131 7 HOH HOH 345 A HOH 127 7 HOH HOH 346 A HOH 88 7 HOH HOH 347 A HOH 91 7 HOH HOH 348 A HOH 104 7 HOH HOH 349 A HOH 119 7 HOH HOH 350 A HOH 74 7 HOH HOH 351 A HOH 116 7 HOH HOH 352 A HOH 50 7 HOH HOH 353 A HOH 3 7 HOH HOH 354 A HOH 85 7 HOH HOH 355 A HOH 62 7 HOH HOH 356 A HOH 108 7 HOH HOH 357 A HOH 53 7 HOH HOH 358 A HOH 60 7 HOH HOH 359 A HOH 132 7 HOH HOH 360 A HOH 6 7 HOH HOH 361 A HOH 32 7 HOH HOH 362 A HOH 10 7 HOH HOH 363 A HOH 134 7 HOH HOH 364 A HOH 33 7 HOH HOH 365 A HOH 25 7 HOH HOH 366 A HOH 47 7 HOH HOH 367 A HOH 97 7 HOH HOH 368 A HOH 59 7 HOH HOH 369 A HOH 42 7 HOH HOH 370 A HOH 4 7 HOH HOH 371 A HOH 81 7 HOH HOH 372 A HOH 133 7 HOH HOH 373 A HOH 43 7 HOH HOH 374 A HOH 9 7 HOH HOH 375 A HOH 37 7 HOH HOH 376 A HOH 79 7 HOH HOH 377 A HOH 24 7 HOH HOH 378 A HOH 78 7 HOH HOH 379 A HOH 120 7 HOH HOH 380 A HOH 48 7 HOH HOH 381 A HOH 121 7 HOH HOH 382 A HOH 56 7 HOH HOH 383 A HOH 46 7 HOH HOH 384 A HOH 96 7 HOH HOH 385 A HOH 84 7 HOH HOH 386 A HOH 123 7 HOH HOH 387 A HOH 11 7 HOH HOH 388 A HOH 44 7 HOH HOH 389 A HOH 57 7 HOH HOH 390 A HOH 63 7 HOH HOH 391 A HOH 76 7 HOH HOH 392 A HOH 66 7 HOH HOH 393 A HOH 36 7 HOH HOH 394 A HOH 54 7 HOH HOH 395 A HOH 17 7 HOH HOH 396 A HOH 30 7 HOH HOH 397 A HOH 2 7 HOH HOH 398 A HOH 106 7 HOH HOH 399 A HOH 38 7 HOH HOH 400 A HOH 70 7 HOH HOH 401 A HOH 65 7 HOH HOH 402 A HOH 90 7 HOH HOH 403 A HOH 28 7 HOH HOH 404 A HOH 31 7 HOH HOH 405 A HOH 86 7 HOH HOH 406 A HOH 99 7 HOH HOH 407 A HOH 49 7 HOH HOH 408 A HOH 16 7 HOH HOH 409 A HOH 83 7 HOH HOH 410 A HOH 115 7 HOH HOH 411 A HOH 22 7 HOH HOH 412 A HOH 45 7 HOH HOH 413 A HOH 29 7 HOH HOH 414 A HOH 114 7 HOH HOH 415 A HOH 89 7 HOH HOH 416 A HOH 124 7 HOH HOH 417 A HOH 55 7 HOH HOH 418 A HOH 100 7 HOH HOH 419 A HOH 126 7 HOH HOH 420 A HOH 128 7 HOH HOH 421 A HOH 73 7 HOH HOH 422 A HOH 101 7 HOH HOH 423 A HOH 105 7 HOH HOH 424 A HOH 77 7 HOH HOH 425 A HOH 98 7 HOH HOH 426 A HOH 102 7 HOH HOH 427 A HOH 95 7 HOH HOH 428 A HOH 125 7 HOH HOH 429 A HOH 23 7 HOH HOH 430 A HOH 64 7 HOH HOH 431 A HOH 103 7 HOH HOH 432 A n 1 1 A GLY 2 n 2 GLY 2 A ASN 3 n 3 ASN 3 A PRO 4 n 4 PRO 4 A LEU 5 n 5 LEU 5 A VAL 6 n 6 VAL 6 A TYR 7 n 7 TYR 7 A LEU 8 n 8 LEU 8 A ASP 9 n 9 ASP 9 A VAL 10 n 10 VAL 10 A ASP 11 n 11 ASP 11 A ALA 12 n 12 ALA 12 A ASN 13 n 13 ASN 13 A GLY 14 n 14 GLY 14 A LYS 15 n 15 LYS 15 A PRO 16 n 16 PRO 16 A LEU 17 n 17 LEU 17 A GLY 18 n 18 GLY 18 A ARG 19 n 19 ARG 19 A VAL 20 n 20 VAL 20 A VAL 21 n 21 VAL 21 A LEU 22 n 22 LEU 22 A GLU 23 n 23 GLU 23 A LEU 24 n 24 LEU 24 A LYS 25 n 25 LYS 25 A ALA 26 n 26 ALA 26 A ASP 27 n 27 ASP 27 A VAL 28 n 28 VAL 28 A VAL 29 n 29 VAL 29 A PRO 30 n 30 PRO 30 A LYS 31 n 31 LYS 31 A THR 32 n 32 THR 32 A ALA 33 n 33 ALA 33 A GLU 34 n 34 GLU 34 A ASN 35 n 35 ASN 35 A PHE 36 n 36 PHE 36 A ARG 37 n 37 ARG 37 A ALA 38 n 38 ALA 38 A LEU 39 n 39 LEU 39 A CYS 40 n 40 CYS 40 A THR 41 n 41 THR 41 A GLY 42 n 42 GLY 42 A GLU 43 n 43 GLU 43 A LYS 44 n 44 LYS 44 A GLY 45 n 45 GLY 45 A PHE 46 n 46 PHE 46 A GLY 47 n 47 GLY 47 A TYR 48 n 48 TYR 48 A LYS 49 n 49 LYS 49 A GLY 50 n 50 GLY 50 A SER 51 n 51 SER 51 A THR 52 n 52 THR 52 A PHE 53 n 53 PHE 53 A HIS 54 n 54 HIS 54 A ARG 55 n 55 ARG 55 A VAL 56 n 56 VAL 56 A ILE 57 n 57 ILE 57 A PRO 58 n 58 PRO 58 A SER 59 n 59 SER 59 A PHE 60 n 60 PHE 60 A MET 61 n 61 MET 61 A CYS 62 n 62 CYS 62 A GLN 63 n 63 GLN 63 A ALA 64 n 64 ALA 64 A GLY 65 n 65 GLY 65 A ASP 66 n 66 ASP 66 A PHE 67 n 67 PHE 67 A THR 68 n 68 THR 68 A ASN 69 n 69 ASN 69 A HIS 70 n 70 HIS 70 A ASN 71 n 71 ASN 71 A GLY 72 n 72 GLY 72 A THR 73 n 73 THR 73 A GLY 74 n 74 GLY 74 A GLY 75 n 75 GLY 75 A LYS 76 n 76 LYS 76 A SER 77 n 77 SER 77 A ILE 78 n 78 ILE 78 A TYR 79 n 79 TYR 79 A GLY 80 n 80 GLY 80 A SER 81 n 81 SER 81 A ARG 82 n 82 ARG 82 A PHE 83 n 83 PHE 83 A PRO 84 n 84 PRO 84 A ASP 85 n 85 ASP 85 A GLU 86 n 86 GLU 86 A ASN 87 n 87 ASN 87 A PHE 88 n 88 PHE 88 A THR 89 n 89 THR 89 A LEU 90 n 90 LEU 90 A LYS 91 n 91 LYS 91 A HIS 92 n 92 HIS 92 A VAL 93 n 93 VAL 93 A GLY 94 n 94 GLY 94 A PRO 95 n 95 PRO 95 A GLY 96 n 96 GLY 96 A VAL 97 n 97 VAL 97 A LEU 98 n 98 LEU 98 A SER 99 n 99 SER 99 A MET 100 n 100 MET 100 A ALA 101 n 101 ALA 101 A ASN 102 n 102 ASN 102 A ALA 103 n 103 ALA 103 A GLY 104 n 104 GLY 104 A PRO 105 n 105 PRO 105 A ASN 106 n 106 ASN 106 A THR 107 n 107 THR 107 A ASN 108 n 108 ASN 108 A GLY 109 n 109 GLY 109 A SER 110 n 110 SER 110 A GLN 111 n 111 GLN 111 A PHE 112 n 112 PHE 112 A PHE 113 n 113 PHE 113 A ILE 114 n 114 ILE 114 A CYS 115 n 115 CYS 115 A THR 116 n 116 THR 116 A ILE 117 n 117 ILE 117 A LYS 118 n 118 LYS 118 A THR 119 n 119 THR 119 A ASP 120 n 120 ASP 120 A TRP 121 n 121 TRP 121 A LEU 122 n 122 LEU 122 A ASP 123 n 123 ASP 123 A GLY 124 n 124 GLY 124 A LYS 125 n 125 LYS 125 A HIS 126 n 126 HIS 126 A VAL 127 n 127 VAL 127 A VAL 128 n 128 VAL 128 A PHE 129 n 129 PHE 129 A GLY 130 n 130 GLY 130 A HIS 131 n 131 HIS 131 A VAL 132 n 132 VAL 132 A ILE 133 n 133 ILE 133 A GLU 134 n 134 GLU 134 A GLY 135 n 135 GLY 135 A MET 136 n 136 MET 136 A ASP 137 n 137 ASP 137 A VAL 138 n 138 VAL 138 A VAL 139 n 139 VAL 139 A LYS 140 n 140 LYS 140 A LYS 141 n 141 LYS 141 A ILE 142 n 142 ILE 142 A GLU 143 n 143 GLU 143 A SER 144 n 144 SER 144 A PHE 145 n 145 PHE 145 A GLY 146 n 146 GLY 146 A SER 147 n 147 SER 147 A LYS 148 n 148 LYS 148 A SER 149 n 149 SER 149 A GLY 150 n 150 GLY 150 A ARG 151 n 151 ARG 151 A THR 152 n 152 THR 152 A SER 153 n 153 SER 153 A LYS 154 n 154 LYS 154 A LYS 155 n 155 LYS 155 A ILE 156 n 156 ILE 156 A VAL 157 n 157 VAL 157 A ILE 158 n 158 ILE 158 A THR 159 n 159 THR 159 A ASP 160 n 160 ASP 160 A CYS 161 n 161 CYS 161 A GLY 162 n 162 GLY 162 A GLN 163 n 163 GLN 163 A LEU 164 n 164 LEU 164 A SER 165 n 165 SER 165 A author_and_software_defined_assembly PISA 1 monomeric 1030 9 7220 A PGE 204 E O4 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O1 PGE 1_555 135.2 A PGE 204 E O4 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O2 PGE 1_555 116.0 A PGE 204 E O1 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O2 PGE 1_555 62.3 A PGE 204 E O4 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O3 PGE 1_555 53.3 A PGE 204 E O1 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O3 PGE 1_555 103.2 A PGE 204 E O2 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O3 PGE 1_555 63.0 A PGE 204 E O4 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O1 PGE 7_555 92.3 A PGE 204 E O1 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O1 PGE 7_555 47.4 A PGE 204 E O2 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O1 PGE 7_555 96.9 A PGE 204 E O3 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O1 PGE 7_555 93.4 A PGE 204 E O4 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O2 PGE 7_555 73.4 A PGE 204 E O1 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O2 PGE 7_555 96.9 A PGE 204 E O2 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O2 PGE 7_555 158.4 A PGE 204 E O3 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O2 PGE 7_555 120.9 A PGE 204 E O1 PGE 7_555 A K 201 B K K 1_555 A PGE 204 E O2 PGE 7_555 62.3 A PGE 204 E O4 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O3 PGE 7_555 118.0 A PGE 204 E O1 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O3 PGE 7_555 93.4 A PGE 204 E O2 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O3 PGE 7_555 120.9 A PGE 204 E O3 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O3 PGE 7_555 161.9 A PGE 204 E O1 PGE 7_555 A K 201 B K K 1_555 A PGE 204 E O3 PGE 7_555 103.2 A PGE 204 E O2 PGE 7_555 A K 201 B K K 1_555 A PGE 204 E O3 PGE 7_555 63.0 A PGE 204 E O4 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O4 PGE 7_555 131.7 A PGE 204 E O1 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O4 PGE 7_555 92.3 A PGE 204 E O2 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O4 PGE 7_555 73.4 A PGE 204 E O3 PGE 1_555 A K 201 B K K 1_555 A PGE 204 E O4 PGE 7_555 118.0 A PGE 204 E O1 PGE 7_555 A K 201 B K K 1_555 A PGE 204 E O4 PGE 7_555 135.2 A PGE 204 E O2 PGE 7_555 A K 201 B K K 1_555 A PGE 204 E O4 PGE 7_555 116.0 A PGE 204 E O3 PGE 7_555 A K 201 B K K 1_555 A PGE 204 E O4 PGE 7_555 53.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 55 A N ARG 55 A O GLN 63 A O GLN 63 A N CYS 62 A N CYS 62 A O ILE 114 A O ILE 114 A O PHE 113 A O PHE 113 A N SER 99 A N SER 99 A N LEU 98 A N LEU 98 A O PHE 129 A O PHE 129 A O ILE 133 A O ILE 133 A N VAL 21 A N VAL 21 A O LEU 17 A O LEU 17 A N VAL 10 A N VAL 10 A N ASP 9 A N ASP 9 A O ASP 160 A O ASP 160 1 A K 201 B K 1 A MET 1 A MET 1 1 Y 1 A A O O HOH HOH 314 352 2.15 1 A A OD1 O ASP HOH 11 301 2.15 1 5.49 0.90 118.30 123.79 A A A CB CG OD1 ASP ASP ASP 27 27 27 N 1 7.74 0.50 120.30 128.04 A A A NE CZ NH1 ARG ARG ARG 37 37 37 N 1 -5.20 0.50 120.30 115.10 A A A NE CZ NH1 ARG ARG ARG 82 82 82 N 1 -10.44 1.60 100.20 89.76 A A A CG SD CE MET MET MET 136 136 136 N 1 A A CD OE1 GLU GLU 43 43 0.068 0.011 1.252 1.320 N 1 A A CD NE ARG ARG 55 55 -0.131 0.017 1.460 1.329 N 1 A A CZ NH2 ARG ARG 55 55 -0.087 0.013 1.326 1.239 N 1 A A CB OG SER SER 81 81 -0.080 0.013 1.418 1.338 N 1 A PHE 60 -144.23 -82.70 1 A ASN 71 -153.21 9.09 1 A THR 119 -118.31 59.29 16.182 0.00 0.00 0.00 0.00 0.00 -0.01 0.967 0.957 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.19719 0.16712 0.16859 1.40 40.6 1941 36789 5.0 99.51 0.779 0.032 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.052 0.056 0.80 0.80 1.20 2BIT MAXIMUM LIKELIHOOD MASK 1.40 40.6 132 1446 74 0 1240 0.029 0.019 1363 0.002 0.020 1300 2.615 2.014 1819 1.168 3.000 2995 6.591 5.000 163 33.730 24.231 52 12.510 15.000 213 16.712 15.000 5 0.134 0.200 186 0.012 0.021 1537 0.002 0.020 329 1.441 1.356 655 1.440 1.357 656 2.041 2.037 820 2.043 2.034 818 2.805 1.677 708 2.803 1.679 709 3.554 2.388 1000 4.814 12.480 1474 4.813 12.495 1475 0.260 0.227 1.436 129 2681 20 99.68 1.4 40.6 5CBU 38921 0.046 1 19.2 7.0 99.7 0.297 1.4 1.48 5.1 1 6.0 99.7 refinement REFMAC 5.8.0123 data reduction XDS data scaling SCALA phasing PHASER Human Cyclophilin D Complexed with Inhibitor. 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N 7 N N A VAL 29 A VAL 29 HELX_P A GLY 42 A GLY 42 1 AA1 14 A THR 119 A THR 119 HELX_P A ASP 123 A ASP 123 5 AA2 5 A GLY 135 A GLY 135 HELX_P A PHE 145 A PHE 145 1 AA3 11 metalc 2.976 A K 201 B K K 1_555 A PGE 204 E O4 PGE 1_555 metalc 3.100 A K 201 B K K 1_555 A PGE 204 E O1 PGE 1_555 metalc 2.603 A K 201 B K K 1_555 A PGE 204 E O2 PGE 1_555 metalc 2.889 A K 201 B K K 1_555 A PGE 204 E O3 PGE 1_555 metalc 3.100 A K 201 B K K 1_555 A PGE 204 E O1 PGE 7_555 metalc 2.603 A K 201 B K K 1_555 A PGE 204 E O2 PGE 7_555 metalc 2.889 A K 201 B K K 1_555 A PGE 204 E O3 PGE 7_555 metalc 2.976 A K 201 B K K 1_555 A PGE 204 E O4 PGE 7_555 ISOMERASE cyclophilin, isomerase, complex, inhibitor PPIF_HUMAN UNP 1 44 P30405 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDC GQLS 44 207 5CBU 2 165 P30405 A 1 2 165 1 initiating methionine MET 1 5CBU A P30405 UNP 1 1 LYS engineered mutation ILE 133 5CBU A P30405 UNP 175 133 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 53 A PHE 53 A ILE 57 A ILE 57 A MET 61 A MET 61 A ALA 64 A ALA 64 A PHE 112 A PHE 112 A CYS 115 A CYS 115 A VAL 97 A VAL 97 A MET 100 A MET 100 A VAL 128 A VAL 128 A GLU 134 A GLU 134 A LYS 15 A LYS 15 A LEU 24 A LEU 24 A LEU 5 A LEU 5 A ALA 12 A ALA 12 A ILE 156 A ILE 156 A GLN 163 A GLN 163 binding site for residue K A 201 A K 201 Software 2 binding site for residue PG4 A 202 A PG4 202 Software 4 binding site for residue EDO A 203 A EDO 203 Software 7 binding site for residue PGE A 204 A PGE 204 Software 6 binding site for residue 4ZM A 205 A 4ZM 205 Software 14 binding site for residue 4ZM A 206 A 4ZM 206 Software 10 A PGE 204 E PGE 2 7_555 A PGE 204 E PGE 2 1_555 A VAL 93 A VAL 93 4 1_555 A PRO 95 A PRO 95 4 1_555 A HIS 131 A HIS 131 4 1_555 A HOH 357 H HOH 4 1_555 A PHE 46 A PHE 46 7 1_555 A GLY 47 A GLY 47 7 1_555 A LYS 49 A LYS 49 7 1_555 A HOH 328 H HOH 7 1_555 A HOH 399 H HOH 7 1_555 A HOH 409 H HOH 7 1_555 A HOH 410 H HOH 7 1_555 A PRO 58 A PRO 58 6 1_555 A SER 59 A SER 59 6 1_555 A TRP 121 A TRP 121 6 1_555 A LYS 148 A LYS 148 6 7_555 A K 201 B K 6 7_555 A K 201 B K 6 1_555 A ARG 55 A ARG 55 14 1_555 A GLN 63 A GLN 63 14 1_555 A GLY 72 A GLY 72 14 1_555 A THR 73 A THR 73 14 1_555 A THR 73 A THR 73 14 7_555 A ARG 82 A ARG 82 14 1_555 A ALA 101 A ALA 101 14 1_555 A ASN 102 A ASN 102 14 1_555 A ALA 103 A ALA 103 14 1_555 A THR 107 A THR 107 14 1_555 A GLN 111 A GLN 111 14 1_555 A PHE 113 A PHE 113 14 1_555 A HIS 126 A HIS 126 14 1_555 A HOH 375 H HOH 14 1_555 A THR 52 A THR 52 10 1_555 A HIS 54 A HIS 54 10 1_555 A HIS 70 A HIS 70 10 1_555 A ASN 71 A ASN 71 10 1_555 A ALA 103 A ALA 103 10 7_555 A GLY 104 A GLY 104 10 7_555 A SER 153 A SER 153 10 1_555 A LYS 154 A LYS 154 10 1_555 A LYS 155 A LYS 155 10 1_555 A HOH 303 H HOH 10 1_555 96 P 43 21 2