0.016533
0.000000
0.000000
-0.000000
0.015186
0.000000
0.000000
-0.000000
0.009315
0.000000
0.000000
0.000000
Boriack-Sjodin, P.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
60.484
65.852
107.358
C28 H34 Cl N5 O4 S
572.119
6-chloranyl-2-oxidanylidene-N-[(1S,5R)-8-[4-[(phenylmethyl)amino]piperidin-1-yl]sulfonyl-8-azabicyclo[3.2.1]octan-3-yl]-1,3-dihydroindole-5-carboxamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C15 H22 N6 O5 S
398.437
S-ADENOSYLMETHIONINE
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
CL
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
Y
10
N
C
Y
11
N
C
N
12
N
C
N
13
N
O
N
14
N
N
N
15
N
C
N
16
N
C
N
17
S
C
N
18
N
C
N
19
N
C
N
20
R
C
N
21
N
C
N
22
N
N
N
23
N
S
N
24
N
O
N
25
N
O
N
26
N
N
N
27
N
C
N
28
N
C
N
29
N
C
N
30
N
C
N
31
N
C
N
32
N
N
N
33
N
C
Y
34
N
C
Y
35
N
C
Y
36
N
C
Y
37
N
C
Y
38
N
C
Y
39
N
C
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
N
N
88
S
C
N
89
N
C
N
90
N
O
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
N
N
95
N
C
N
96
N
N
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
S
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
N
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
R
C
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
S
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
N
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
S
C
N
183
N
C
N
184
N
O
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
O
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
Y
215
N
C
Y
216
N
N
Y
217
N
C
Y
218
N
C
Y
219
N
N
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
S
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
N
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
S
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
O
N
368
N
C
N
369
N
C
N
370
S
S
N
371
N
C
N
372
N
C
N
373
S
C
N
374
N
O
N
375
S
C
N
376
N
O
N
377
R
C
N
378
N
O
N
379
R
C
Y
380
N
N
Y
381
N
C
Y
382
N
N
Y
383
N
C
Y
384
N
C
N
385
N
N
Y
386
N
N
Y
387
N
C
Y
388
N
N
Y
389
N
C
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
O
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
R
C
N
431
N
O
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
N
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
Y
480
N
C
N
481
N
O
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
N
N
495
S
C
N
496
N
C
N
497
N
O
N
498
N
C
N
499
N
C
N
500
N
C
N
501
N
O
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
doub
N
7
N
sing
Y
8
N
doub
Y
9
N
sing
Y
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
Y
15
N
doub
N
16
N
sing
Y
17
N
doub
Y
18
N
sing
N
19
N
sing
Y
20
N
doub
Y
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
doub
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
Y
41
N
doub
Y
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
Y
218
N
sing
Y
219
N
doub
Y
220
N
doub
N
221
N
sing
Y
222
N
sing
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
sing
Y
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
Y
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
N
401
N
sing
Y
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
Y
446
N
doub
Y
447
N
sing
Y
448
N
sing
N
449
N
sing
Y
450
N
doub
Y
451
N
sing
Y
452
N
sing
N
453
N
sing
Y
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
doub
N
458
N
sing
Y
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
Y
474
N
doub
Y
475
N
sing
Y
476
N
sing
N
477
N
sing
Y
478
N
doub
N
479
N
sing
Y
480
N
doub
N
481
N
sing
Y
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
doub
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
US
Acs Med.Chem.Lett.
1948-5875
7
134
138
10.1021/acsmedchemlett.5b00272
26985287
Novel Oxindole Sulfonamides and Sulfamides: EPZ031686, the First Orally Bioavailable Small Molecule SMYD3 Inhibitor.
2016
10.2210/pdb5ccm/pdb
pdb_00005ccm
100
1
CCD
2015-02-22
RAYONIX MX300HS
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
22-ID
APS
1.000
SYNCHROTRON
APS BEAMLINE 22-ID
49150.105
Histone-lysine N-methyltransferase SMYD3
2.1.1.43
1
man
polymer
65.409
ZINC ION
3
syn
non-polymer
398.437
S-ADENOSYLMETHIONINE
1
syn
non-polymer
572.119
6-chloranyl-2-oxidanylidene-N-[(1S,5R)-8-[4-[(phenylmethyl)amino]piperidin-1-yl]sulfonyl-8-azabicyclo[3.2.1]octan-3-yl]-1,3-dihydroindole-5-carboxamide
1
syn
non-polymer
18.015
water
123
nat
water
SET and MYND domain-containing protein 3,Zinc finger MYND domain-containing protein 1
no
no
MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAW
PDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQ
DASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYL
DMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERL
PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM
RVTHGREHSLIEDLILLLEECDANIRAS
MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAW
PDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQ
DASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYL
DMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERL
PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM
RVTHGREHSLIEDLILLLEECDANIRAS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
428
SMYD3, ZMYND1, ZNFN3A1
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.20
44.11
VAPOR DIFFUSION, HANGING DROP
8.0
0.10 M Magnesium formate, 0.1M Tris 8.0, 14% w/v PEG 3350
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_oper_list
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2015-09-09
1
1
2016-03-30
1
2
2024-03-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_oper_list.symmetry_operation
N
RCSB
Y
RCSB
2015-07-02
REL
REL
ZN
ZINC ION
SAM
S-ADENOSYLMETHIONINE
4ZX
6-chloranyl-2-oxidanylidene-N-[(1S,5R)-8-[4-[(phenylmethyl)amino]piperidin-1-yl]sulfonyl-8-azabicyclo[3.2.1]octan-3-yl]-1,3-dihydroindole-5-carboxamide
HOH
water
ZN
1
2
ZN
ZN
501
A
ZN
2
2
ZN
ZN
502
A
ZN
3
2
ZN
ZN
503
A
SAM
1
3
SAM
SAM
504
A
EPZ
1
4
4ZX
4ZX
505
A
HOH
55
5
HOH
HOH
601
A
HOH
40
5
HOH
HOH
602
A
HOH
74
5
HOH
HOH
603
A
HOH
16
5
HOH
HOH
604
A
HOH
63
5
HOH
HOH
605
A
HOH
31
5
HOH
HOH
606
A
HOH
83
5
HOH
HOH
607
A
HOH
97
5
HOH
HOH
608
A
HOH
100
5
HOH
HOH
609
A
HOH
58
5
HOH
HOH
610
A
HOH
7
5
HOH
HOH
611
A
HOH
106
5
HOH
HOH
612
A
HOH
104
5
HOH
HOH
613
A
HOH
92
5
HOH
HOH
614
A
HOH
80
5
HOH
HOH
615
A
HOH
99
5
HOH
HOH
616
A
HOH
120
5
HOH
HOH
617
A
HOH
45
5
HOH
HOH
618
A
HOH
57
5
HOH
HOH
619
A
HOH
75
5
HOH
HOH
620
A
HOH
91
5
HOH
HOH
621
A
HOH
36
5
HOH
HOH
622
A
HOH
111
5
HOH
HOH
623
A
HOH
43
5
HOH
HOH
624
A
HOH
22
5
HOH
HOH
625
A
HOH
118
5
HOH
HOH
626
A
HOH
121
5
HOH
HOH
627
A
HOH
78
5
HOH
HOH
628
A
HOH
2
5
HOH
HOH
629
A
HOH
34
5
HOH
HOH
630
A
HOH
82
5
HOH
HOH
631
A
HOH
122
5
HOH
HOH
632
A
HOH
123
5
HOH
HOH
633
A
HOH
81
5
HOH
HOH
634
A
HOH
113
5
HOH
HOH
635
A
HOH
18
5
HOH
HOH
636
A
HOH
51
5
HOH
HOH
637
A
HOH
19
5
HOH
HOH
638
A
HOH
53
5
HOH
HOH
639
A
HOH
46
5
HOH
HOH
640
A
HOH
26
5
HOH
HOH
641
A
HOH
44
5
HOH
HOH
642
A
HOH
110
5
HOH
HOH
643
A
HOH
109
5
HOH
HOH
644
A
HOH
35
5
HOH
HOH
645
A
HOH
33
5
HOH
HOH
646
A
HOH
86
5
HOH
HOH
647
A
HOH
72
5
HOH
HOH
648
A
HOH
47
5
HOH
HOH
649
A
HOH
37
5
HOH
HOH
650
A
HOH
25
5
HOH
HOH
651
A
HOH
102
5
HOH
HOH
652
A
HOH
67
5
HOH
HOH
653
A
HOH
21
5
HOH
HOH
654
A
HOH
32
5
HOH
HOH
655
A
HOH
88
5
HOH
HOH
656
A
HOH
13
5
HOH
HOH
657
A
HOH
50
5
HOH
HOH
658
A
HOH
38
5
HOH
HOH
659
A
HOH
1
5
HOH
HOH
660
A
HOH
9
5
HOH
HOH
661
A
HOH
103
5
HOH
HOH
662
A
HOH
61
5
HOH
HOH
663
A
HOH
12
5
HOH
HOH
664
A
HOH
17
5
HOH
HOH
665
A
HOH
3
5
HOH
HOH
666
A
HOH
28
5
HOH
HOH
667
A
HOH
117
5
HOH
HOH
668
A
HOH
6
5
HOH
HOH
669
A
HOH
108
5
HOH
HOH
670
A
HOH
42
5
HOH
HOH
671
A
HOH
84
5
HOH
HOH
672
A
HOH
14
5
HOH
HOH
673
A
HOH
94
5
HOH
HOH
674
A
HOH
23
5
HOH
HOH
675
A
HOH
5
5
HOH
HOH
676
A
HOH
115
5
HOH
HOH
677
A
HOH
4
5
HOH
HOH
678
A
HOH
30
5
HOH
HOH
679
A
HOH
68
5
HOH
HOH
680
A
HOH
10
5
HOH
HOH
681
A
HOH
105
5
HOH
HOH
682
A
HOH
64
5
HOH
HOH
683
A
HOH
48
5
HOH
HOH
684
A
HOH
73
5
HOH
HOH
685
A
HOH
77
5
HOH
HOH
686
A
HOH
107
5
HOH
HOH
687
A
HOH
27
5
HOH
HOH
688
A
HOH
98
5
HOH
HOH
689
A
HOH
85
5
HOH
HOH
690
A
HOH
114
5
HOH
HOH
691
A
HOH
54
5
HOH
HOH
692
A
HOH
29
5
HOH
HOH
693
A
HOH
8
5
HOH
HOH
694
A
HOH
11
5
HOH
HOH
695
A
HOH
65
5
HOH
HOH
696
A
HOH
41
5
HOH
HOH
697
A
HOH
119
5
HOH
HOH
698
A
HOH
95
5
HOH
HOH
699
A
HOH
15
5
HOH
HOH
700
A
HOH
24
5
HOH
HOH
701
A
HOH
93
5
HOH
HOH
702
A
HOH
79
5
HOH
HOH
703
A
HOH
39
5
HOH
HOH
704
A
HOH
59
5
HOH
HOH
705
A
HOH
116
5
HOH
HOH
706
A
HOH
90
5
HOH
HOH
707
A
HOH
60
5
HOH
HOH
708
A
HOH
49
5
HOH
HOH
709
A
HOH
70
5
HOH
HOH
710
A
HOH
71
5
HOH
HOH
711
A
HOH
87
5
HOH
HOH
712
A
HOH
66
5
HOH
HOH
713
A
HOH
20
5
HOH
HOH
714
A
HOH
112
5
HOH
HOH
715
A
HOH
89
5
HOH
HOH
716
A
HOH
62
5
HOH
HOH
717
A
HOH
96
5
HOH
HOH
718
A
HOH
76
5
HOH
HOH
719
A
HOH
101
5
HOH
HOH
720
A
HOH
52
5
HOH
HOH
721
A
HOH
69
5
HOH
HOH
722
A
HOH
56
5
HOH
HOH
723
A
n
1
1
A
n
2
2
A
PRO
3
n
3
PRO
3
A
LEU
4
n
4
LEU
4
A
LYS
5
n
5
LYS
5
A
VAL
6
n
6
VAL
6
A
GLU
7
n
7
GLU
7
A
LYS
8
n
8
LYS
8
A
PHE
9
n
9
PHE
9
A
ALA
10
n
10
ALA
10
A
THR
11
n
11
THR
11
A
ALA
12
n
12
ALA
12
A
ASN
13
n
13
ASN
13
A
ARG
14
n
14
ARG
14
A
GLY
15
n
15
GLY
15
A
ASN
16
n
16
ASN
16
A
GLY
17
n
17
GLY
17
A
LEU
18
n
18
LEU
18
A
ARG
19
n
19
ARG
19
A
ALA
20
n
20
ALA
20
A
VAL
21
n
21
VAL
21
A
THR
22
n
22
THR
22
A
PRO
23
n
23
PRO
23
A
LEU
24
n
24
LEU
24
A
ARG
25
n
25
ARG
25
A
PRO
26
n
26
PRO
26
A
GLY
27
n
27
GLY
27
A
GLU
28
n
28
GLU
28
A
LEU
29
n
29
LEU
29
A
LEU
30
n
30
LEU
30
A
PHE
31
n
31
PHE
31
A
ARG
32
n
32
ARG
32
A
SER
33
n
33
SER
33
A
ASP
34
n
34
ASP
34
A
PRO
35
n
35
PRO
35
A
LEU
36
n
36
LEU
36
A
ALA
37
n
37
ALA
37
A
TYR
38
n
38
TYR
38
A
THR
39
n
39
THR
39
A
VAL
40
n
40
VAL
40
A
CYS
41
n
41
CYS
41
A
LYS
42
n
42
LYS
42
A
GLY
43
n
43
GLY
43
A
SER
44
n
44
SER
44
A
ARG
45
n
45
ARG
45
A
GLY
46
n
46
GLY
46
A
VAL
47
n
47
VAL
47
A
VAL
48
n
48
VAL
48
A
CYS
49
n
49
CYS
49
A
ASP
50
n
50
ASP
50
A
ARG
51
n
51
ARG
51
A
CYS
52
n
52
CYS
52
A
LEU
53
n
53
LEU
53
A
LEU
54
n
54
LEU
54
A
GLY
55
n
55
GLY
55
A
LYS
56
n
56
LYS
56
A
GLU
57
n
57
GLU
57
A
LYS
58
n
58
LYS
58
A
LEU
59
n
59
LEU
59
A
MET
60
n
60
MET
60
A
ARG
61
n
61
ARG
61
A
CYS
62
n
62
CYS
62
A
SER
63
n
63
SER
63
A
GLN
64
n
64
GLN
64
A
CYS
65
n
65
CYS
65
A
ARG
66
n
66
ARG
66
A
VAL
67
n
67
VAL
67
A
ALA
68
n
68
ALA
68
A
LYS
69
n
69
LYS
69
A
TYR
70
n
70
TYR
70
A
CYS
71
n
71
CYS
71
A
SER
72
n
72
SER
72
A
ALA
73
n
73
ALA
73
A
LYS
74
n
74
LYS
74
A
CYS
75
n
75
CYS
75
A
GLN
76
n
76
GLN
76
A
LYS
77
n
77
LYS
77
A
LYS
78
n
78
LYS
78
A
ALA
79
n
79
ALA
79
A
TRP
80
n
80
TRP
80
A
PRO
81
n
81
PRO
81
A
ASP
82
n
82
ASP
82
A
HIS
83
n
83
HIS
83
A
LYS
84
n
84
LYS
84
A
ARG
85
n
85
ARG
85
A
GLU
86
n
86
GLU
86
A
CYS
87
n
87
CYS
87
A
LYS
88
n
88
LYS
88
A
CYS
89
n
89
CYS
89
A
LEU
90
n
90
LEU
90
A
LYS
91
n
91
LYS
91
A
SER
92
n
92
SER
92
A
CYS
93
n
93
CYS
93
A
LYS
94
n
94
LYS
94
A
PRO
95
n
95
PRO
95
A
ARG
96
n
96
ARG
96
A
TYR
97
n
97
TYR
97
A
PRO
98
n
98
PRO
98
A
PRO
99
n
99
PRO
99
A
ASP
100
n
100
ASP
100
A
SER
101
n
101
SER
101
A
VAL
102
n
102
VAL
102
A
ARG
103
n
103
ARG
103
A
LEU
104
n
104
LEU
104
A
LEU
105
n
105
LEU
105
A
GLY
106
n
106
GLY
106
A
ARG
107
n
107
ARG
107
A
VAL
108
n
108
VAL
108
A
VAL
109
n
109
VAL
109
A
PHE
110
n
110
PHE
110
A
LYS
111
n
111
LYS
111
A
LEU
112
n
112
LEU
112
A
MET
113
n
113
MET
113
A
ASP
114
n
114
ASP
114
A
GLY
115
n
115
GLY
115
A
ALA
116
n
116
ALA
116
A
PRO
117
n
117
PRO
117
A
SER
118
n
118
SER
118
A
GLU
119
n
119
GLU
119
A
SER
120
n
120
SER
120
A
GLU
121
n
121
GLU
121
A
LYS
122
n
122
LYS
122
A
LEU
123
n
123
LEU
123
A
TYR
124
n
124
TYR
124
A
SER
125
n
125
SER
125
A
PHE
126
n
126
PHE
126
A
TYR
127
n
127
TYR
127
A
ASP
128
n
128
ASP
128
A
LEU
129
n
129
LEU
129
A
GLU
130
n
130
GLU
130
A
SER
131
n
131
SER
131
A
ASN
132
n
132
ASN
132
A
ILE
133
n
133
ILE
133
A
ASN
134
n
134
ASN
134
A
LYS
135
n
135
LYS
135
A
LEU
136
n
136
LEU
136
A
THR
137
n
137
THR
137
A
GLU
138
n
138
GLU
138
A
ASP
139
n
139
ASP
139
A
LYS
140
n
140
LYS
140
A
LYS
141
n
141
LYS
141
A
GLU
142
n
142
GLU
142
A
GLY
143
n
143
GLY
143
A
LEU
144
n
144
LEU
144
A
ARG
145
n
145
ARG
145
A
GLN
146
n
146
GLN
146
A
LEU
147
n
147
LEU
147
A
VAL
148
n
148
VAL
148
A
MET
149
n
149
MET
149
A
THR
150
n
150
THR
150
A
PHE
151
n
151
PHE
151
A
GLN
152
n
152
GLN
152
A
HIS
153
n
153
HIS
153
A
PHE
154
n
154
PHE
154
A
MET
155
n
155
MET
155
A
ARG
156
n
156
ARG
156
A
GLU
157
n
157
GLU
157
A
GLU
158
n
158
GLU
158
A
ILE
159
n
159
ILE
159
A
GLN
160
n
160
GLN
160
A
ASP
161
n
161
ASP
161
A
ALA
162
n
162
ALA
162
A
SER
163
n
163
SER
163
A
GLN
164
n
164
GLN
164
A
LEU
165
n
165
LEU
165
A
PRO
166
n
166
PRO
166
A
PRO
167
n
167
PRO
167
A
ALA
168
n
168
ALA
168
A
PHE
169
n
169
PHE
169
A
ASP
170
n
170
ASP
170
A
LEU
171
n
171
LEU
171
A
PHE
172
n
172
PHE
172
A
GLU
173
n
173
GLU
173
A
ALA
174
n
174
ALA
174
A
PHE
175
n
175
PHE
175
A
ALA
176
n
176
ALA
176
A
LYS
177
n
177
LYS
177
A
VAL
178
n
178
VAL
178
A
ILE
179
n
179
ILE
179
A
CYS
180
n
180
CYS
180
A
ASN
181
n
181
ASN
181
A
SER
182
n
182
SER
182
A
PHE
183
n
183
PHE
183
A
THR
184
n
184
THR
184
A
ILE
185
n
185
ILE
185
A
CYS
186
n
186
CYS
186
A
ASN
187
n
187
ASN
187
A
ALA
188
n
188
ALA
188
A
GLU
189
n
189
GLU
189
A
MET
190
n
190
MET
190
A
GLN
191
n
191
GLN
191
A
GLU
192
n
192
GLU
192
A
VAL
193
n
193
VAL
193
A
GLY
194
n
194
GLY
194
A
VAL
195
n
195
VAL
195
A
GLY
196
n
196
GLY
196
A
LEU
197
n
197
LEU
197
A
TYR
198
n
198
TYR
198
A
PRO
199
n
199
PRO
199
A
SER
200
n
200
SER
200
A
ILE
201
n
201
ILE
201
A
SER
202
n
202
SER
202
A
LEU
203
n
203
LEU
203
A
LEU
204
n
204
LEU
204
A
ASN
205
n
205
ASN
205
A
HIS
206
n
206
HIS
206
A
SER
207
n
207
SER
207
A
CYS
208
n
208
CYS
208
A
ASP
209
n
209
ASP
209
A
PRO
210
n
210
PRO
210
A
ASN
211
n
211
ASN
211
A
CYS
212
n
212
CYS
212
A
SER
213
n
213
SER
213
A
ILE
214
n
214
ILE
214
A
VAL
215
n
215
VAL
215
A
PHE
216
n
216
PHE
216
A
ASN
217
n
217
ASN
217
A
GLY
218
n
218
GLY
218
A
PRO
219
n
219
PRO
219
A
HIS
220
n
220
HIS
220
A
LEU
221
n
221
LEU
221
A
LEU
222
n
222
LEU
222
A
LEU
223
n
223
LEU
223
A
ARG
224
n
224
ARG
224
A
ALA
225
n
225
ALA
225
A
VAL
226
n
226
VAL
226
A
ARG
227
n
227
ARG
227
A
ASP
228
n
228
ASP
228
A
ILE
229
n
229
ILE
229
A
GLU
230
n
230
GLU
230
A
VAL
231
n
231
VAL
231
A
GLY
232
n
232
GLY
232
A
GLU
233
n
233
GLU
233
A
GLU
234
n
234
GLU
234
A
LEU
235
n
235
LEU
235
A
THR
236
n
236
THR
236
A
ILE
237
n
237
ILE
237
A
CYS
238
n
238
CYS
238
A
TYR
239
n
239
TYR
239
A
LEU
240
n
240
LEU
240
A
ASP
241
n
241
ASP
241
A
MET
242
n
242
MET
242
A
LEU
243
n
243
LEU
243
A
MET
244
n
244
MET
244
A
THR
245
n
245
THR
245
A
SER
246
n
246
SER
246
A
GLU
247
n
247
GLU
247
A
GLU
248
n
248
GLU
248
A
ARG
249
n
249
ARG
249
A
ARG
250
n
250
ARG
250
A
LYS
251
n
251
LYS
251
A
GLN
252
n
252
GLN
252
A
LEU
253
n
253
LEU
253
A
ARG
254
n
254
ARG
254
A
ASP
255
n
255
ASP
255
A
GLN
256
n
256
GLN
256
A
TYR
257
n
257
TYR
257
A
CYS
258
n
258
CYS
258
A
PHE
259
n
259
PHE
259
A
GLU
260
n
260
GLU
260
A
CYS
261
n
261
CYS
261
A
ASP
262
n
262
ASP
262
A
CYS
263
n
263
CYS
263
A
PHE
264
n
264
PHE
264
A
ARG
265
n
265
ARG
265
A
CYS
266
n
266
CYS
266
A
GLN
267
n
267
GLN
267
A
THR
268
n
268
THR
268
A
GLN
269
n
269
GLN
269
A
ASP
270
n
270
ASP
270
A
LYS
271
n
271
LYS
271
A
ASP
272
n
272
ASP
272
A
ALA
273
n
273
ALA
273
A
ASP
274
n
274
ASP
274
A
MET
275
n
275
MET
275
A
LEU
276
n
276
LEU
276
A
THR
277
n
277
THR
277
A
GLY
278
n
278
GLY
278
A
ASP
279
n
279
ASP
279
A
GLU
280
n
280
GLU
280
A
GLN
281
n
281
GLN
281
A
VAL
282
n
282
VAL
282
A
TRP
283
n
283
TRP
283
A
LYS
284
n
284
LYS
284
A
GLU
285
n
285
GLU
285
A
VAL
286
n
286
VAL
286
A
GLN
287
n
287
GLN
287
A
GLU
288
n
288
GLU
288
A
SER
289
n
289
SER
289
A
LEU
290
n
290
LEU
290
A
LYS
291
n
291
LYS
291
A
LYS
292
n
292
LYS
292
A
ILE
293
n
293
ILE
293
A
GLU
294
n
294
GLU
294
A
GLU
295
n
295
GLU
295
A
LEU
296
n
296
LEU
296
A
LYS
297
n
297
LYS
297
A
ALA
298
n
298
ALA
298
A
HIS
299
n
299
HIS
299
A
TRP
300
n
300
TRP
300
A
LYS
301
n
301
LYS
301
A
TRP
302
n
302
TRP
302
A
GLU
303
n
303
GLU
303
A
GLN
304
n
304
GLN
304
A
VAL
305
n
305
VAL
305
A
LEU
306
n
306
LEU
306
A
ALA
307
n
307
ALA
307
A
MET
308
n
308
MET
308
A
CYS
309
n
309
CYS
309
A
GLN
310
n
310
GLN
310
A
ALA
311
n
311
ALA
311
A
ILE
312
n
312
ILE
312
A
ILE
313
n
313
ILE
313
A
SER
314
n
314
SER
314
A
SER
315
n
315
SER
315
A
ASN
316
n
316
ASN
316
A
SER
317
n
317
SER
317
A
GLU
318
n
318
GLU
318
A
ARG
319
n
319
ARG
319
A
LEU
320
n
320
LEU
320
A
PRO
321
n
321
PRO
321
A
ASP
322
n
322
ASP
322
A
ILE
323
n
323
ILE
323
A
ASN
324
n
324
ASN
324
A
ILE
325
n
325
ILE
325
A
TYR
326
n
326
TYR
326
A
GLN
327
n
327
GLN
327
A
LEU
328
n
328
LEU
328
A
LYS
329
n
329
LYS
329
A
VAL
330
n
330
VAL
330
A
LEU
331
n
331
LEU
331
A
ASP
332
n
332
ASP
332
A
CYS
333
n
333
CYS
333
A
ALA
334
n
334
ALA
334
A
MET
335
n
335
MET
335
A
ASP
336
n
336
ASP
336
A
ALA
337
n
337
ALA
337
A
CYS
338
n
338
CYS
338
A
ILE
339
n
339
ILE
339
A
ASN
340
n
340
ASN
340
A
LEU
341
n
341
LEU
341
A
GLY
342
n
342
GLY
342
A
LEU
343
n
343
LEU
343
A
LEU
344
n
344
LEU
344
A
GLU
345
n
345
GLU
345
A
GLU
346
n
346
GLU
346
A
ALA
347
n
347
ALA
347
A
LEU
348
n
348
LEU
348
A
PHE
349
n
349
PHE
349
A
TYR
350
n
350
TYR
350
A
GLY
351
n
351
GLY
351
A
THR
352
n
352
THR
352
A
ARG
353
n
353
ARG
353
A
THR
354
n
354
THR
354
A
MET
355
n
355
MET
355
A
GLU
356
n
356
GLU
356
A
PRO
357
n
357
PRO
357
A
TYR
358
n
358
TYR
358
A
ARG
359
n
359
ARG
359
A
ILE
360
n
360
ILE
360
A
PHE
361
n
361
PHE
361
A
PHE
362
n
362
PHE
362
A
PRO
363
n
363
PRO
363
A
GLY
364
n
364
GLY
364
A
SER
365
n
365
SER
365
A
HIS
366
n
366
HIS
366
A
PRO
367
n
367
PRO
367
A
VAL
368
n
368
VAL
368
A
ARG
369
n
369
ARG
369
A
GLY
370
n
370
GLY
370
A
VAL
371
n
371
VAL
371
A
GLN
372
n
372
GLN
372
A
VAL
373
n
373
VAL
373
A
MET
374
n
374
MET
374
A
LYS
375
n
375
LYS
375
A
VAL
376
n
376
VAL
376
A
GLY
377
n
377
GLY
377
A
LYS
378
n
378
LYS
378
A
LEU
379
n
379
LEU
379
A
GLN
380
n
380
GLN
380
A
LEU
381
n
381
LEU
381
A
HIS
382
n
382
HIS
382
A
GLN
383
n
383
GLN
383
A
GLY
384
n
384
GLY
384
A
MET
385
n
385
MET
385
A
PHE
386
n
386
PHE
386
A
PRO
387
n
387
PRO
387
A
GLN
388
n
388
GLN
388
A
ALA
389
n
389
ALA
389
A
MET
390
n
390
MET
390
A
LYS
391
n
391
LYS
391
A
ASN
392
n
392
ASN
392
A
LEU
393
n
393
LEU
393
A
ARG
394
n
394
ARG
394
A
LEU
395
n
395
LEU
395
A
ALA
396
n
396
ALA
396
A
PHE
397
n
397
PHE
397
A
ASP
398
n
398
ASP
398
A
ILE
399
n
399
ILE
399
A
MET
400
n
400
MET
400
A
ARG
401
n
401
ARG
401
A
VAL
402
n
402
VAL
402
A
THR
403
n
403
THR
403
A
HIS
404
n
404
HIS
404
A
GLY
405
n
405
GLY
405
A
ARG
406
n
406
ARG
406
A
GLU
407
n
407
GLU
407
A
HIS
408
n
408
HIS
408
A
SER
409
n
409
SER
409
A
LEU
410
n
410
LEU
410
A
ILE
411
n
411
ILE
411
A
GLU
412
n
412
GLU
412
A
ASP
413
n
413
ASP
413
A
LEU
414
n
414
LEU
414
A
ILE
415
n
415
ILE
415
A
LEU
416
n
416
LEU
416
A
LEU
417
n
417
LEU
417
A
LEU
418
n
418
LEU
418
A
GLU
419
n
419
GLU
419
A
GLU
420
n
420
GLU
420
A
CYS
421
n
421
CYS
421
A
ASP
422
n
422
ASP
422
A
ALA
423
n
423
ALA
423
A
ASN
424
n
424
ASN
424
A
ILE
425
n
425
ILE
425
A
n
426
426
A
n
427
427
A
n
428
428
A
author_and_software_defined_assembly
PISA
1
monomeric
A
CYS
49
A
SG
CYS
49
1_555
A
ZN
501
B
ZN
ZN
1_555
A
CYS
52
A
SG
CYS
52
1_555
103.0
A
CYS
49
A
SG
CYS
49
1_555
A
ZN
501
B
ZN
ZN
1_555
A
CYS
71
A
SG
CYS
71
1_555
117.0
A
CYS
52
A
SG
CYS
52
1_555
A
ZN
501
B
ZN
ZN
1_555
A
CYS
71
A
SG
CYS
71
1_555
108.8
A
CYS
49
A
SG
CYS
49
1_555
A
ZN
501
B
ZN
ZN
1_555
A
CYS
75
A
SG
CYS
75
1_555
112.8
A
CYS
52
A
SG
CYS
52
1_555
A
ZN
501
B
ZN
ZN
1_555
A
CYS
75
A
SG
CYS
75
1_555
112.7
A
CYS
71
A
SG
CYS
71
1_555
A
ZN
501
B
ZN
ZN
1_555
A
CYS
75
A
SG
CYS
75
1_555
102.7
A
CYS
62
A
SG
CYS
62
1_555
A
ZN
503
D
ZN
ZN
1_555
A
CYS
65
A
SG
CYS
65
1_555
106.7
A
CYS
62
A
SG
CYS
62
1_555
A
ZN
503
D
ZN
ZN
1_555
A
HIS
83
A
NE2
HIS
83
1_555
110.0
A
CYS
65
A
SG
CYS
65
1_555
A
ZN
503
D
ZN
ZN
1_555
A
HIS
83
A
NE2
HIS
83
1_555
110.4
A
CYS
62
A
SG
CYS
62
1_555
A
ZN
503
D
ZN
ZN
1_555
A
CYS
87
A
SG
CYS
87
1_555
114.4
A
CYS
65
A
SG
CYS
65
1_555
A
ZN
503
D
ZN
ZN
1_555
A
CYS
87
A
SG
CYS
87
1_555
108.0
A
HIS
83
A
NE2
HIS
83
1_555
A
ZN
503
D
ZN
ZN
1_555
A
CYS
87
A
SG
CYS
87
1_555
107.4
A
CYS
208
A
SG
CYS
208
1_555
A
ZN
502
C
ZN
ZN
1_555
A
CYS
261
A
SG
CYS
261
1_555
118.9
A
CYS
208
A
SG
CYS
208
1_555
A
ZN
502
C
ZN
ZN
1_555
A
CYS
263
A
SG
CYS
263
1_555
106.6
A
CYS
261
A
SG
CYS
261
1_555
A
ZN
502
C
ZN
ZN
1_555
A
CYS
263
A
SG
CYS
263
1_555
108.9
A
CYS
208
A
SG
CYS
208
1_555
A
ZN
502
C
ZN
ZN
1_555
A
CYS
266
A
SG
CYS
266
1_555
98.0
A
CYS
261
A
SG
CYS
261
1_555
A
ZN
502
C
ZN
ZN
1_555
A
CYS
266
A
SG
CYS
266
1_555
111.8
A
CYS
263
A
SG
CYS
263
1_555
A
ZN
502
C
ZN
ZN
1_555
A
CYS
266
A
SG
CYS
266
1_555
112.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
9
A
N
PHE
9
A
O
GLY
17
A
O
GLY
17
A
N
LEU
30
A
N
LEU
30
A
O
LEU
223
A
O
LEU
223
A
O
HIS
220
A
O
HIS
220
A
N
ASN
217
A
N
ASN
217
A
N
THR
39
A
N
THR
39
A
O
VAL
195
A
O
VAL
195
A
O
GLY
196
A
O
GLY
196
A
N
PHE
183
A
N
PHE
183
A
N
MET
60
A
N
MET
60
A
O
TYR
70
A
O
TYR
70
A
N
ASN
205
A
N
ASN
205
A
O
ILE
237
A
O
ILE
237
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
ARG
426
A
ARG
426
1
Y
1
A
ALA
427
A
ALA
427
1
Y
1
A
SER
428
A
SER
428
1
Y
1
A
ASN
13
-143.77
21.43
1
A
ARG
14
-144.83
44.01
1
A
LYS
271
73.48
-5.97
104.030
34.0620
15.820
6.2000
-0.0000
0.0000
-1.4600
-0.0000
-4.7400
0.9450
0.9080
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.2551
0.2005
0.2033
2.3
50
948
18577
4.9000
98.2900
8.9390
0.2100
RANDOM
1
THROUGHOUT
0.000
0.4320
0.2630
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.3
50
123
3576
31.69
30.21
69
0
3384
423
0.006
0.019
3540
0.001
0.020
3419
1.211
2.001
4769
0.772
3.003
7883
5.781
5.000
424
34.538
24.074
162
14.376
15.000
658
15.938
15.000
27
0.066
0.200
519
0.004
0.021
3903
0.001
0.020
794
1.442
3.279
1696
1.442
3.279
1696
2.454
4.910
2117
0.3530
0.2970
2.3510
50
1182
1232
20
86.8200
2.300
50.000
5CCM
19568
0.146
0.069
0.162
1.407
1
13.212
6.000
98933
5.100
98.400
0.480
2.300
2.380
1750
0.816
0.288
0.566
0.831
1
2.500
0
90.200
0.454
2.380
2.480
1876
0.868
0.247
0.521
0.851
1
3.500
0
97.000
0.462
2.480
2.590
1941
0.899
0.229
0.518
0.892
1
4.500
0
99.300
0.421
2.590
2.730
1948
0.948
0.196
0.466
0.920
1
5.400
0
99.500
0.330
2.730
2.900
1969
0.959
0.150
0.363
1.036
1
5.700
0
99.500
0.230
2.900
3.120
1957
0.978
0.104
0.253
1.233
1
5.900
0
99.400
0.157
3.120
3.440
1967
0.987
0.071
0.173
1.485
1
5.800
0
99.500
0.110
3.440
3.930
2003
0.992
0.050
0.121
1.841
1
5.800
0
100.000
0.078
3.930
4.950
2014
0.995
0.036
0.086
2.037
1
5.700
0
99.800
0.066
4.950
50.000
2143
0.996
0.031
0.074
2.049
1
5.400
0
99.500
data reduction
HKL-2000
data scaling
SCALEPACK
refinement
REFMAC
5.8.0073
data extraction
PDB_EXTRACT
3.15
Crystal structure of SMYD3 with SAM and EPZ030456
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
SER
72
A
SER
72
HELX_P
A
LYS
94
A
LYS
94
1
AA1
23
A
PRO
99
A
PRO
99
HELX_P
A
GLY
115
A
GLY
115
1
AA2
17
A
SER
118
A
SER
118
HELX_P
A
LYS
122
A
LYS
122
5
AA3
5
A
SER
125
A
SER
125
HELX_P
A
LEU
129
A
LEU
129
5
AA4
5
A
ASN
132
A
ASN
132
HELX_P
A
LEU
136
A
LEU
136
5
AA5
5
A
THR
137
A
THR
137
HELX_P
A
MET
155
A
MET
155
1
AA6
19
A
ASP
161
A
ASP
161
HELX_P
A
LEU
165
A
LEU
165
5
AA7
5
A
ASP
170
A
ASP
170
HELX_P
A
ASN
181
A
ASN
181
1
AA8
12
A
SER
200
A
SER
200
HELX_P
A
LEU
204
A
LEU
204
5
AA9
5
A
THR
245
A
THR
245
HELX_P
A
CYS
258
A
CYS
258
1
AB1
14
A
CYS
263
A
CYS
263
HELX_P
A
GLN
269
A
GLN
269
1
AB2
7
A
LYS
271
A
LYS
271
HELX_P
A
LEU
276
A
LEU
276
1
AB3
6
A
ASP
279
A
ASP
279
HELX_P
A
HIS
299
A
HIS
299
1
AB4
21
A
LYS
301
A
LYS
301
HELX_P
A
SER
314
A
SER
314
1
AB5
14
A
ASN
324
A
ASN
324
HELX_P
A
LEU
341
A
LEU
341
1
AB6
18
A
LEU
343
A
LEU
343
HELX_P
A
THR
354
A
THR
354
1
AB7
12
A
THR
354
A
THR
354
HELX_P
A
PHE
362
A
PHE
362
1
AB8
9
A
HIS
366
A
HIS
366
HELX_P
A
HIS
382
A
HIS
382
1
AB9
17
A
MET
385
A
MET
385
HELX_P
A
HIS
404
A
HIS
404
1
AC1
20
A
HIS
408
A
HIS
408
HELX_P
A
ILE
425
A
ILE
425
1
AC2
18
metalc
2.298
A
CYS
49
A
SG
CYS
49
1_555
A
ZN
501
B
ZN
ZN
1_555
metalc
2.317
A
CYS
52
A
SG
CYS
52
1_555
A
ZN
501
B
ZN
ZN
1_555
metalc
2.315
A
CYS
62
A
SG
CYS
62
1_555
A
ZN
503
D
ZN
ZN
1_555
metalc
2.330
A
CYS
65
A
SG
CYS
65
1_555
A
ZN
503
D
ZN
ZN
1_555
metalc
2.325
A
CYS
71
A
SG
CYS
71
1_555
A
ZN
501
B
ZN
ZN
1_555
metalc
2.327
A
CYS
75
A
SG
CYS
75
1_555
A
ZN
501
B
ZN
ZN
1_555
metalc
2.079
A
HIS
83
A
NE2
HIS
83
1_555
A
ZN
503
D
ZN
ZN
1_555
metalc
2.321
A
CYS
87
A
SG
CYS
87
1_555
A
ZN
503
D
ZN
ZN
1_555
metalc
2.338
A
CYS
208
A
SG
CYS
208
1_555
A
ZN
502
C
ZN
ZN
1_555
metalc
2.330
A
CYS
261
A
SG
CYS
261
1_555
A
ZN
502
C
ZN
ZN
1_555
metalc
2.307
A
CYS
263
A
SG
CYS
263
1_555
A
ZN
502
C
ZN
ZN
1_555
metalc
2.334
A
CYS
266
A
SG
CYS
266
1_555
A
ZN
502
C
ZN
ZN
1_555
TRANSFERASE/TRANSFERASE Inhibitor
protein-inhibitor complex, methyltransferase, epigenetics, drug discovery, TRANSFERASE-TRANSFERASE Inhibitor complex
A
LYS
94
A
LYS
94
1
A
PRO
95
A
PRO
95
6.12
SMYD3_HUMAN
UNP
1
1
Q9H7B4
MEPLKVEKFATAKRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAW
PDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQ
DASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYL
DMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERL
PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM
RVTHGREHSLIEDLILLLEECDANIRAS
1
428
5CCM
1
428
Q9H7B4
A
1
1
428
1
LYS
conflict
ASN
13
5CCM
A
Q9H7B4
UNP
13
13
2
3
3
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
VAL
6
A
VAL
6
A
ALA
10
A
ALA
10
A
ASN
16
A
ASN
16
A
ALA
20
A
ALA
20
A
LEU
29
A
LEU
29
A
SER
33
A
SER
33
A
HIS
220
A
HIS
220
A
ALA
225
A
ALA
225
A
CYS
212
A
CYS
212
A
ASN
217
A
ASN
217
A
ALA
37
A
ALA
37
A
VAL
40
A
VAL
40
A
GLU
192
A
GLU
192
A
LEU
197
A
LEU
197
A
SER
182
A
SER
182
A
CYS
186
A
CYS
186
A
MET
60
A
MET
60
A
ARG
61
A
ARG
61
A
LYS
69
A
LYS
69
A
TYR
70
A
TYR
70
A
ASN
205
A
ASN
205
A
HIS
206
A
HIS
206
A
THR
236
A
THR
236
A
ILE
237
A
ILE
237
binding site for residue ZN A 501
A
ZN
501
Software
4
binding site for residue ZN A 502
A
ZN
502
Software
4
binding site for residue ZN A 503
A
ZN
503
Software
4
binding site for residue SAM A 504
A
SAM
504
Software
22
binding site for residue 4ZX A 505
A
4ZX
505
Software
23
A
CYS
49
A
CYS
49
4
1_555
A
CYS
52
A
CYS
52
4
1_555
A
CYS
71
A
CYS
71
4
1_555
A
CYS
75
A
CYS
75
4
1_555
A
CYS
208
A
CYS
208
4
1_555
A
CYS
261
A
CYS
261
4
1_555
A
CYS
263
A
CYS
263
4
1_555
A
CYS
266
A
CYS
266
4
1_555
A
CYS
62
A
CYS
62
4
1_555
A
CYS
65
A
CYS
65
4
1_555
A
HIS
83
A
HIS
83
4
1_555
A
CYS
87
A
CYS
87
4
1_555
A
ARG
14
A
ARG
14
22
1_555
A
GLY
15
A
GLY
15
22
1_555
A
ASN
16
A
ASN
16
22
1_555
A
TYR
124
A
TYR
124
22
1_555
A
ASN
132
A
ASN
132
22
1_555
A
ASN
181
A
ASN
181
22
1_555
A
SER
202
A
SER
202
22
1_555
A
LEU
203
A
LEU
203
22
1_555
A
LEU
204
A
LEU
204
22
1_555
A
ASN
205
A
ASN
205
22
1_555
A
HIS
206
A
HIS
206
22
1_555
A
TYR
239
A
TYR
239
22
1_555
A
TYR
257
A
TYR
257
22
1_555
A
PHE
259
A
PHE
259
22
1_555
A
4ZX
505
F
4ZX
22
1_555
A
HOH
605
G
HOH
22
1_555
A
HOH
644
G
HOH
22
1_555
A
HOH
645
G
HOH
22
1_555
A
HOH
659
G
HOH
22
1_555
A
HOH
660
G
HOH
22
1_555
A
HOH
669
G
HOH
22
1_555
A
HOH
688
G
HOH
22
1_555
A
CYS
180
A
CYS
180
23
1_555
A
ASN
181
A
ASN
181
23
1_555
A
SER
182
A
SER
182
23
1_555
A
PHE
183
A
PHE
183
23
1_555
A
THR
184
A
THR
184
23
1_555
A
CYS
186
A
CYS
186
23
1_555
A
MET
190
A
MET
190
23
1_555
A
GLU
192
A
GLU
192
23
1_555
A
SER
202
A
SER
202
23
1_555
A
ILE
214
A
ILE
214
23
1_555
A
ILE
237
A
ILE
237
23
1_555
A
CYS
238
A
CYS
238
23
1_555
A
TYR
239
A
TYR
239
23
1_555
A
LEU
240
A
LEU
240
23
1_555
A
ASP
241
A
ASP
241
23
1_555
A
TYR
257
A
TYR
257
23
1_555
A
GLU
294
A
GLU
294
23
1_555
A
LYS
329
A
LYS
329
23
1_555
A
ASP
332
A
ASP
332
23
1_555
A
CYS
333
A
CYS
333
23
1_555
A
VAL
368
A
VAL
368
23
1_555
A
SAM
504
E
SAM
23
1_555
A
HOH
641
G
HOH
23
1_555
19
P 21 21 21