0.013523 0.007808 0.000000 0.000000 0.015615 0.000000 0.000000 0.000000 0.007777 0.000000 0.000000 0.000000 Kumar, G. White, S.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 73.946 73.946 128.584 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mn 2 54.938 MANGANESE (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 URIDINE-5'-MONOPHOSPHATE non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N MN N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 N C N 375 N N N 376 N C N 377 N C N 378 N C N 379 N O N 380 N O N 381 R C N 382 R C N 383 N O N 384 S C N 385 R C N 386 N O N 387 N O N 388 N C N 389 N O N 390 N P N 391 N O N 392 N O N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 N C N 412 N C N 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 113 3669 3674 10.1073/pnas.1519772113 26976575 Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor. 2016 10.2210/pdb5cl0/pdb pdb_00005cl0 100 1 CCD 2014-07-16 MARMOSAIC 225 mm CCD double crystal Si(220) SINGLE WAVELENGTH M x-ray 1 1.000 1.0 22-BM APS 1.000 SYNCHROTRON APS BEAMLINE 22-BM 21970.160 Polymerase acidic protein 3.1.-.- endonuclease domain (UNP residues 1-50, 73-196) 1 man polymer 54.938 MANGANESE (II) ION 2 syn non-polymer 324.181 URIDINE-5'-MONOPHOSPHATE 1 syn non-polymer 18.015 water 61 nat water no no MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDGGSKHRFEIIEGRDRIMAWTVVNSICNTTG VEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIR QEMASRSLWDSFRQSERAAAELALVPR MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDGGSKHRFEIIEGRDRIMAWTVVNSICNTTG VEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIR QEMASRSLWDSFRQSERAAAELALVPR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n swl A/California/04/2009 H1N1 sample 1 50 PA 641501 Influenza A virus 469008 Escherichia coli BL21(DE3) plasmid Biological sequence pET52b swl A/California/04/2009 H1N1 sample 51 187 PA 641501 Influenza A virus 469008 Escherichia coli BL21(DE3) plasmid Biological sequence pET52b 1 2.41 48.98 VAPOR DIFFUSION, HANGING DROP 8.5 0.2 M magnesium chloride, 5 mM manganese chloride, 0.1 M Tris, pH 8.5, 30% w/v PEG4000 291 citation pdbx_audit_support pdbx_struct_oper_list software pdbx_audit_support pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn repository Initial release Database references Database references Author supporting evidence Database references Derived calculations Refinement description Author supporting evidence Author supporting evidence Data collection Database references Derived calculations Refinement description 1 0 2016-03-16 1 1 2016-03-30 1 2 2016-04-13 1 3 2017-09-06 1 4 2017-11-22 1 5 2019-12-11 1 6 2020-01-08 1 7 2023-09-27 _citation.journal_id_CSD _pdbx_audit_support.funding_organization _pdbx_struct_oper_list.symmetry_operation _pdbx_audit_support.funding_organization _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01AI098757 United States St. Jude Children's Research Hospital (ALSAC) United States St. Jude Children's Research Hospital (ALSAC) N RCSB Y RCSB 2015-07-15 REL REL MN MANGANESE (II) ION U5P URIDINE-5'-MONOPHOSPHATE HOH water 5CCY PDB entry 5CCY PDB experimental model MN 201 2 MN MN 301 A MN 202 2 MN MN 302 A U5P 301 3 U5P U5P 303 A HOH 29 4 HOH HOH 401 A HOH 3 4 HOH HOH 402 A HOH 4 4 HOH HOH 403 A HOH 23 4 HOH HOH 404 A HOH 15 4 HOH HOH 405 A HOH 31 4 HOH HOH 406 A HOH 12 4 HOH HOH 407 A HOH 56 4 HOH HOH 408 A HOH 47 4 HOH HOH 409 A HOH 48 4 HOH HOH 410 A HOH 28 4 HOH HOH 411 A HOH 34 4 HOH HOH 412 A HOH 26 4 HOH HOH 413 A HOH 37 4 HOH HOH 414 A HOH 13 4 HOH HOH 415 A HOH 35 4 HOH HOH 416 A HOH 20 4 HOH HOH 417 A HOH 41 4 HOH HOH 418 A HOH 30 4 HOH HOH 419 A HOH 62 4 HOH HOH 420 A HOH 40 4 HOH HOH 421 A HOH 51 4 HOH HOH 422 A HOH 6 4 HOH HOH 423 A HOH 32 4 HOH HOH 424 A HOH 53 4 HOH HOH 425 A HOH 9 4 HOH HOH 426 A HOH 2 4 HOH HOH 427 A HOH 7 4 HOH HOH 428 A HOH 24 4 HOH HOH 429 A HOH 50 4 HOH HOH 430 A HOH 49 4 HOH HOH 431 A HOH 11 4 HOH HOH 432 A HOH 39 4 HOH HOH 433 A HOH 38 4 HOH HOH 434 A HOH 36 4 HOH HOH 435 A HOH 17 4 HOH HOH 436 A HOH 16 4 HOH HOH 437 A HOH 54 4 HOH HOH 438 A HOH 19 4 HOH HOH 439 A HOH 44 4 HOH HOH 440 A HOH 42 4 HOH HOH 441 A HOH 5 4 HOH HOH 442 A HOH 14 4 HOH HOH 443 A HOH 8 4 HOH HOH 444 A HOH 25 4 HOH HOH 445 A HOH 61 4 HOH HOH 446 A HOH 18 4 HOH HOH 447 A HOH 55 4 HOH HOH 448 A HOH 21 4 HOH HOH 449 A HOH 22 4 HOH HOH 450 A HOH 45 4 HOH HOH 451 A HOH 10 4 HOH HOH 452 A HOH 1 4 HOH HOH 453 A HOH 27 4 HOH HOH 454 A HOH 33 4 HOH HOH 455 A HOH 43 4 HOH HOH 456 A HOH 60 4 HOH HOH 457 A HOH 59 4 HOH HOH 458 A HOH 58 4 HOH HOH 459 A HOH 57 4 HOH HOH 460 A HOH 52 4 HOH HOH 461 A MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A ASP 3 n 3 ASP 3 A PHE 4 n 4 PHE 4 A VAL 5 n 5 VAL 5 A ARG 6 n 6 ARG 6 A GLN 7 n 7 GLN 7 A CYS 8 n 8 CYS 8 A PHE 9 n 9 PHE 9 A ASN 10 n 10 ASN 10 A PRO 11 n 11 PRO 11 A MET 12 n 12 MET 12 A ILE 13 n 13 ILE 13 A VAL 14 n 14 VAL 14 A GLU 15 n 15 GLU 15 A LEU 16 n 16 LEU 16 A ALA 17 n 17 ALA 17 A GLU 18 n 18 GLU 18 A LYS 19 n 19 LYS 19 A ALA 20 n 20 ALA 20 A MET 21 n 21 MET 21 A LYS 22 n 22 LYS 22 A GLU 23 n 23 GLU 23 A TYR 24 n 24 TYR 24 A GLY 25 n 25 GLY 25 A GLU 26 n 26 GLU 26 A ASP 27 n 27 ASP 27 A PRO 28 n 28 PRO 28 A LYS 29 n 29 LYS 29 A ILE 30 n 30 ILE 30 A GLU 31 n 31 GLU 31 A THR 32 n 32 THR 32 A ASN 33 n 33 ASN 33 A LYS 34 n 34 LYS 34 A PHE 35 n 35 PHE 35 A ALA 36 n 36 ALA 36 A ALA 37 n 37 ALA 37 A ILE 38 n 38 ILE 38 A CYS 39 n 39 CYS 39 A THR 40 n 40 THR 40 A HIS 41 n 41 HIS 41 A LEU 42 n 42 LEU 42 A GLU 43 n 43 GLU 43 A VAL 44 n 44 VAL 44 A CYS 45 n 45 CYS 45 A PHE 46 n 46 PHE 46 A MET 47 n 47 MET 47 A TYR 48 n 48 TYR 48 A SER 49 n 49 SER 49 A ASP 50 n 50 ASP 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A SER 53 n 53 SER 53 A LYS 73 n 54 LYS 73 A HIS 74 n 55 HIS 74 A ARG 75 n 56 ARG 75 A PHE 76 n 57 PHE 76 A GLU 77 n 58 GLU 77 A ILE 78 n 59 ILE 78 A ILE 79 n 60 ILE 79 A GLU 80 n 61 GLU 80 A GLY 81 n 62 GLY 81 A ARG 82 n 63 ARG 82 A ASP 83 n 64 ASP 83 A ARG 84 n 65 ARG 84 A ILE 85 n 66 ILE 85 A MET 86 n 67 MET 86 A ALA 87 n 68 ALA 87 A TRP 88 n 69 TRP 88 A THR 89 n 70 THR 89 A VAL 90 n 71 VAL 90 A VAL 91 n 72 VAL 91 A ASN 92 n 73 ASN 92 A SER 93 n 74 SER 93 A ILE 94 n 75 ILE 94 A CYS 95 n 76 CYS 95 A ASN 96 n 77 ASN 96 A THR 97 n 78 THR 97 A THR 98 n 79 THR 98 A GLY 99 n 80 GLY 99 A VAL 100 n 81 VAL 100 A GLU 101 n 82 GLU 101 A LYS 102 n 83 LYS 102 A PRO 103 n 84 PRO 103 A LYS 104 n 85 LYS 104 A PHE 105 n 86 PHE 105 A LEU 106 n 87 LEU 106 A PRO 107 n 88 PRO 107 A ASP 108 n 89 ASP 108 A LEU 109 n 90 LEU 109 A TYR 110 n 91 TYR 110 A ASP 111 n 92 ASP 111 A TYR 112 n 93 TYR 112 A LYS 113 n 94 LYS 113 A GLU 114 n 95 GLU 114 A ASN 115 n 96 ASN 115 A ARG 116 n 97 ARG 116 A PHE 117 n 98 PHE 117 A ILE 118 n 99 ILE 118 A GLU 119 n 100 GLU 119 A ILE 120 n 101 ILE 120 A GLY 121 n 102 GLY 121 A VAL 122 n 103 VAL 122 A THR 123 n 104 THR 123 A ARG 124 n 105 ARG 124 A ARG 125 n 106 ARG 125 A GLU 126 n 107 GLU 126 A VAL 127 n 108 VAL 127 A HIS 128 n 109 HIS 128 A ILE 129 n 110 ILE 129 A TYR 130 n 111 TYR 130 A TYR 131 n 112 TYR 131 A LEU 132 n 113 LEU 132 A GLU 133 n 114 GLU 133 A LYS 134 n 115 LYS 134 A ALA 135 n 116 ALA 135 A ASN 136 n 117 ASN 136 A LYS 137 n 118 LYS 137 A ILE 138 n 119 ILE 138 A LYS 139 n 120 LYS 139 A SER 140 n 121 SER 140 A GLU 141 n 122 GLU 141 A LYS 142 n 123 LYS 142 A THR 143 n 124 THR 143 A HIS 144 n 125 HIS 144 A ILE 145 n 126 ILE 145 A HIS 146 n 127 HIS 146 A ILE 147 n 128 ILE 147 A PHE 148 n 129 PHE 148 A SER 149 n 130 SER 149 A PHE 150 n 131 PHE 150 A THR 151 n 132 THR 151 A GLY 152 n 133 GLY 152 A GLU 153 n 134 GLU 153 A GLU 154 n 135 GLU 154 A MET 155 n 136 MET 155 A ALA 156 n 137 ALA 156 A THR 157 n 138 THR 157 A LYS 158 n 139 LYS 158 A ALA 159 n 140 ALA 159 A ASP 160 n 141 ASP 160 A TYR 161 n 142 TYR 161 A THR 162 n 143 THR 162 A LEU 163 n 144 LEU 163 A ASP 164 n 145 ASP 164 A GLU 165 n 146 GLU 165 A GLU 166 n 147 GLU 166 A SER 167 n 148 SER 167 A ARG 168 n 149 ARG 168 A ALA 169 n 150 ALA 169 A ARG 170 n 151 ARG 170 A ILE 171 n 152 ILE 171 A LYS 172 n 153 LYS 172 A THR 173 n 154 THR 173 A ARG 174 n 155 ARG 174 A LEU 175 n 156 LEU 175 A PHE 176 n 157 PHE 176 A THR 177 n 158 THR 177 A ILE 178 n 159 ILE 178 A ARG 179 n 160 ARG 179 A GLN 180 n 161 GLN 180 A GLU 181 n 162 GLU 181 A MET 182 n 163 MET 182 A ALA 183 n 164 ALA 183 A SER 184 n 165 SER 184 A ARG 185 n 166 ARG 185 A SER 186 n 167 SER 186 A LEU 187 n 168 LEU 187 A TRP 188 n 169 TRP 188 A ASP 189 n 170 ASP 189 A SER 190 n 171 SER 190 A PHE 191 n 172 PHE 191 A ARG 192 n 173 ARG 192 A GLN 193 n 174 GLN 193 A SER 194 n 175 SER 194 A GLU 195 n 176 GLU 195 A ARG 196 n 177 ARG 196 A ALA 197 n 178 ALA 197 A n 179 198 A n 180 199 A n 181 200 A n 182 201 A n 183 202 A n 184 203 A n 185 204 A n 186 205 A n 187 206 A 0.1477 -0.1542 -0.0560 0.9489 0.4239 1.3118 -0.0529 0.0051 -0.0664 -0.0059 -0.0461 0.0232 0.1068 -0.0004 0.0990 0.0997 0.0004 0.0377 0.0235 -0.0165 0.0568 refined -14.2157 75.4937 14.2503 X-RAY DIFFRACTION A 1 A 178 X-RAY DIFFRACTION 1 C 301 C 301 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric 830 -18 9400 A HIS 41 A NE2 HIS 41 1_555 A MN 301 B MN MN 1_555 A ASP 108 A OD2 ASP 89 1_555 95.4 A HIS 41 A NE2 HIS 41 1_555 A MN 301 B MN MN 1_555 A GLU 119 A OE2 GLU 100 1_555 170.9 A ASP 108 A OD2 ASP 89 1_555 A MN 301 B MN MN 1_555 A GLU 119 A OE2 GLU 100 1_555 90.7 A HIS 41 A NE2 HIS 41 1_555 A MN 301 B MN MN 1_555 A ILE 120 A O ILE 101 1_555 86.9 A ASP 108 A OD2 ASP 89 1_555 A MN 301 B MN MN 1_555 A ILE 120 A O ILE 101 1_555 91.3 A GLU 119 A OE2 GLU 100 1_555 A MN 301 B MN MN 1_555 A ILE 120 A O ILE 101 1_555 86.1 A HIS 41 A NE2 HIS 41 1_555 A MN 301 B MN MN 1_555 A U5P 303 D O2P U5P 1_555 87.4 A ASP 108 A OD2 ASP 89 1_555 A MN 301 B MN MN 1_555 A U5P 303 D O2P U5P 1_555 105.1 A GLU 119 A OE2 GLU 100 1_555 A MN 301 B MN MN 1_555 A U5P 303 D O2P U5P 1_555 97.6 A ILE 120 A O ILE 101 1_555 A MN 301 B MN MN 1_555 A U5P 303 D O2P U5P 1_555 163.0 A HIS 41 A NE2 HIS 41 1_555 A MN 301 B MN MN 1_555 A U5P 303 D O1P U5P 1_555 88.7 A ASP 108 A OD2 ASP 89 1_555 A MN 301 B MN MN 1_555 A U5P 303 D O1P U5P 1_555 171.2 A GLU 119 A OE2 GLU 100 1_555 A MN 301 B MN MN 1_555 A U5P 303 D O1P U5P 1_555 86.2 A ILE 120 A O ILE 101 1_555 A MN 301 B MN MN 1_555 A U5P 303 D O1P U5P 1_555 96.6 A U5P 303 D O2P U5P 1_555 A MN 301 B MN MN 1_555 A U5P 303 D O1P U5P 1_555 67.2 A GLU 80 A OE2 GLU 61 1_555 A MN 302 C MN MN 1_555 A ASP 108 A OD1 ASP 89 1_555 86.8 A GLU 80 A OE2 GLU 61 1_555 A MN 302 C MN MN 1_555 A U5P 303 D O2P U5P 1_555 93.3 A ASP 108 A OD1 ASP 89 1_555 A MN 302 C MN MN 1_555 A U5P 303 D O2P U5P 1_555 92.3 A GLU 80 A OE2 GLU 61 1_555 A MN 302 C MN MN 1_555 A HOH 402 E O HOH 1_555 174.8 A ASP 108 A OD1 ASP 89 1_555 A MN 302 C MN MN 1_555 A HOH 402 E O HOH 1_555 90.7 A U5P 303 D O2P U5P 1_555 A MN 302 C MN MN 1_555 A HOH 402 E O HOH 1_555 91.3 A GLU 80 A OE2 GLU 61 1_555 A MN 302 C MN MN 1_555 A HOH 427 E O HOH 1_555 86.7 A ASP 108 A OD1 ASP 89 1_555 A MN 302 C MN MN 1_555 A HOH 427 E O HOH 1_555 88.8 A U5P 303 D O2P U5P 1_555 A MN 302 C MN MN 1_555 A HOH 427 E O HOH 1_555 178.9 A HOH 402 E O HOH 1_555 A MN 302 C MN MN 1_555 A HOH 427 E O HOH 1_555 88.8 A GLU 80 A OE2 GLU 61 1_555 A MN 302 C MN MN 1_555 A HOH 453 E O HOH 1_555 93.4 A ASP 108 A OD1 ASP 89 1_555 A MN 302 C MN MN 1_555 A HOH 453 E O HOH 1_555 171.8 A U5P 303 D O2P U5P 1_555 A MN 302 C MN MN 1_555 A HOH 453 E O HOH 1_555 95.8 A HOH 402 E O HOH 1_555 A MN 302 C MN MN 1_555 A HOH 453 E O HOH 1_555 88.5 A HOH 427 E O HOH 1_555 A MN 302 C MN MN 1_555 A HOH 453 E O HOH 1_555 83.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 77 A N GLU 58 A O TYR 110 A O TYR 91 A N ASP 111 A N ASP 92 A O ARG 116 A O ARG 97 A N GLU 119 A N GLU 100 A O HIS 144 A O HIS 125 A N ILE 147 A N ILE 128 A O MET 155 A O MET 136 1 A CG LYS 104 A CG LYS 85 1 Y 1 A CD LYS 104 A CD LYS 85 1 Y 1 A CE LYS 104 A CE LYS 85 1 Y 1 A NZ LYS 104 A NZ LYS 85 1 Y 1 A CG GLU 141 A CG GLU 122 1 Y 1 A CD GLU 141 A CD GLU 122 1 Y 1 A OE1 GLU 141 A OE1 GLU 122 1 Y 1 A OE2 GLU 141 A OE2 GLU 122 1 Y 1 A CG LYS 142 A CG LYS 123 1 Y 1 A CD LYS 142 A CD LYS 123 1 Y 1 A CE LYS 142 A CE LYS 123 1 Y 1 A NZ LYS 142 A NZ LYS 123 1 Y 1 A CG GLU 166 A CG GLU 147 1 Y 1 A CD GLU 166 A CD GLU 147 1 Y 1 A OE1 GLU 166 A OE1 GLU 147 1 Y 1 A OE2 GLU 166 A OE2 GLU 147 1 Y 1 A ALA 198 A ALA 179 1 Y 1 A ALA 199 A ALA 180 1 Y 1 A GLU 200 A GLU 181 1 Y 1 A LEU 201 A LEU 182 1 Y 1 A ALA 202 A ALA 183 1 Y 1 A LEU 203 A LEU 184 1 Y 1 A VAL 204 A VAL 185 1 Y 1 A PRO 205 A PRO 186 1 Y 1 A ARG 206 A ARG 187 1 Y 1 A A OE2 ND1 GLU HIS 126 128 2.14 1 A ARG 125 -99.83 -112.76 1 A LYS 139 61.79 -26.50 1 A THR 162 71.16 -58.94 93.080 44.1920 24.560 -0.6600 -0.3300 0.0000 -0.6600 0.0000 2.1400 0.9580 0.9470 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2411 0.1915 0.1938 2.2200 50.00 522 10308 4.8000 99.9000 12.0280 0.1530 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.2640 0.2110 0.8000 0.8000 1.2000 PDB entry 5CCY MAXIMUM LIKELIHOOD MASK 2.2200 50.00 61 1542 57.11 44.03 23 0 1458 178 0.012 0.019 1510 0.002 0.020 1406 1.483 1.957 2033 0.956 3.000 3234 5.742 5.000 177 36.406 23.026 76 14.256 15.000 275 16.968 15.000 14 0.090 0.200 218 0.006 0.020 1671 0.001 0.020 365 1.653 3.516 711 1.651 3.514 710 2.726 5.267 887 0.3660 0.2490 2.2800 44 724 768 20 99.6100 2.220 50.000 5CL0 10855 0.098 0.027 0.094 1.216 1 31.943 8.300 153418 14.100 99.800 0.981 2.220 2.300 1053 0.875 0.264 1.147 1 14.000 0 99.900 0.758 2.300 2.390 1051 0.901 0.202 0.785 1.142 1 14.500 0 100.000 0.563 2.390 2.500 1042 0.944 0.150 0.583 1.144 1 14.500 0 100.000 0.395 2.500 2.630 1069 0.973 0.106 0.409 1.188 1 14.500 0 100.000 0.281 2.630 2.800 1059 0.985 0.075 0.291 1.172 1 14.400 0 100.000 0.183 2.800 3.010 1070 0.994 0.049 0.190 1.215 1 14.400 0 100.000 0.117 3.010 3.320 1079 0.997 0.031 0.121 1.218 1 14.300 0 100.000 0.068 3.320 3.800 1096 0.999 0.018 0.071 1.386 1 14.100 0 100.000 0.058 3.800 4.780 1124 0.999 0.016 0.060 1.310 1 13.900 0 99.900 0.035 4.780 50.000 1212 1.000 0.010 0.037 1.228 1 12.800 0 98.700 refinement REFMAC 5.8.0123 data collection SERGUI data scaling HKL-2000 phasing PHASER data extraction PDB_EXTRACT 3.15 data reduction HKL-2000 2009 H1N1 PA endonuclease in complex with rUMP 1 N N 2 N N 2 N N 3 N N 4 N N A MET 1 A MET 1 HELX_P A PHE 9 A PHE 9 1 AA1 9 A ASN 10 A ASN 10 HELX_P A TYR 24 A TYR 24 1 AA2 15 A GLU 31 A GLU 31 HELX_P A GLY 51 A GLY 51 1 AA3 21 A ASP 83 A ASP 64 HELX_P A GLY 99 A GLY 80 1 AA4 17 A GLU 126 A GLU 107 HELX_P A LYS 139 A LYS 120 1 AA5 14 A LYS 158 A LYS 139 HELX_P A ASP 160 A ASP 141 5 AA6 3 A ASP 164 A ASP 145 HELX_P A ARG 185 A ARG 166 1 AA7 22 A LEU 187 A LEU 168 HELX_P A GLN 193 A GLN 174 1 AA8 7 metalc 2.336 A HIS 41 A NE2 HIS 41 1_555 A MN 301 B MN MN 1_555 metalc 2.126 A GLU 80 A OE2 GLU 61 1_555 A MN 302 C MN MN 1_555 metalc 2.194 A ASP 108 A OD2 ASP 89 1_555 A MN 301 B MN MN 1_555 metalc 2.175 A ASP 108 A OD1 ASP 89 1_555 A MN 302 C MN MN 1_555 metalc 2.132 A GLU 119 A OE2 GLU 100 1_555 A MN 301 B MN MN 1_555 metalc 2.192 A ILE 120 A O ILE 101 1_555 A MN 301 B MN MN 1_555 metalc 2.305 A MN 301 B MN MN 1_555 A U5P 303 D O2P U5P 1_555 metalc 2.281 A MN 301 B MN MN 1_555 A U5P 303 D O1P U5P 1_555 metalc 2.084 A MN 302 C MN MN 1_555 A U5P 303 D O2P U5P 1_555 metalc 2.153 A MN 302 C MN MN 1_555 A HOH 402 E O HOH 1_555 metalc 2.326 A MN 302 C MN MN 1_555 A HOH 427 E O HOH 1_555 metalc 2.120 A MN 302 C MN MN 1_555 A HOH 453 E O HOH 1_555 VIRAL PROTEIN influenza, resistance, endonuclease inhibitor, viral protein C3W5S0_I09A0 UNP 1 1 C3W5S0 MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSD C3W5S0_I09A0 UNP 1 73 C3W5S0 KHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTG EEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSER 1 50 5CL0 1 50 C3W5S0 A 1 1 50 73 196 5CL0 73 196 C3W5S0 A 2 54 177 1 linker GLY 51 5CL0 A C3W5S0 UNP 51 1 linker GLY 52 5CL0 A C3W5S0 UNP 52 1 linker SER 53 5CL0 A C3W5S0 UNP 53 2 expression tag ALA 197 5CL0 A C3W5S0 UNP 178 2 expression tag ALA 198 5CL0 A C3W5S0 UNP 179 2 expression tag ALA 199 5CL0 A C3W5S0 UNP 180 2 expression tag GLU 200 5CL0 A C3W5S0 UNP 181 2 expression tag LEU 201 5CL0 A C3W5S0 UNP 182 2 expression tag ALA 202 5CL0 A C3W5S0 UNP 183 2 expression tag LEU 203 5CL0 A C3W5S0 UNP 184 2 expression tag VAL 204 5CL0 A C3W5S0 UNP 185 2 expression tag PRO 205 5CL0 A C3W5S0 UNP 186 2 expression tag ARG 206 5CL0 A C3W5S0 UNP 187 5 anti-parallel anti-parallel parallel anti-parallel A PHE 76 A PHE 57 A ILE 78 A ILE 59 A LEU 109 A LEU 90 A ASP 111 A ASP 92 A ARG 116 A ARG 97 A THR 123 A THR 104 A HIS 144 A HIS 125 A SER 149 A SER 130 A GLU 154 A GLU 135 A ALA 156 A ALA 137 binding site for residue MN A 301 A MN 301 Software 5 binding site for residue MN A 302 A MN 302 Software 6 binding site for residue U5P A 303 A U5P 303 Software 13 A HIS 41 A HIS 41 5 1_555 A ASP 108 A ASP 89 5 1_555 A GLU 119 A GLU 100 5 1_555 A ILE 120 A ILE 101 5 1_555 A U5P 303 D U5P 5 1_555 A GLU 80 A GLU 61 6 1_555 A ASP 108 A ASP 89 6 1_555 A U5P 303 D U5P 6 1_555 A HOH 402 E HOH 6 1_555 A HOH 427 E HOH 6 1_555 A HOH 453 E HOH 6 1_555 A TYR 24 A TYR 24 13 1_555 A LYS 34 A LYS 34 13 1_555 A HIS 41 A HIS 41 13 1_555 A GLU 80 A GLU 61 13 1_555 A ASP 108 A ASP 89 13 1_555 A GLU 119 A GLU 100 13 1_555 A ILE 120 A ILE 101 13 1_555 A LYS 134 A LYS 115 13 1_555 A MN 301 B MN 13 1_555 A MN 302 C MN 13 1_555 A HOH 402 E HOH 13 1_555 A HOH 403 E HOH 13 1_555 A HOH 442 E HOH 13 1_555 181 P 64 2 2