0.011993
0.006924
0.000000
0.000000
0.013848
0.000000
0.000000
0.000000
0.004508
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.000
90.000
120.000
83.381
83.381
221.829
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of an IcmL-like type IV secretion system protein (lpg0120) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1 at 2.65 A resolution
10.2210/pdb5cnl/pdb
pdb_00005cnl
100
1
Vertical focusing mirror; double crystal Si(111) monochromator
CCD
2015-03-25
MARMOSAIC 325 mm CCD
double crystal Si(111)
MAD
M
x-ray
1
0.95369
1.0
0.9793
1.0
0.9791
1.0
BL14-1
SSRL
0.95369,0.9793,0.9791
SYNCHROTRON
SSRL BEAMLINE BL14-1
17305.326
IcmL-like
2
man
polymer
150.173
TRIETHYLENE GLYCOL
3
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
2
syn
non-polymer
96.063
SULFATE ION
8
syn
non-polymer
18.015
water
23
nat
water
no
yes
GGPDRAQLAVWANEAIIATYTFDYKNY(MSE)QQQKEIAKYFSADGWIAYSKALNQSKLPEVVQKNAYFVNAVATEPPKL
ITLDPTHWQAI(MSE)PILVVYKNPQYEQKQNLKVVLGFTVASPGQGVRGFSVTSLQSTPISPPCQCKIEETPGNTKQGD
AKQ
GGPDRAQLAVWANEAIIATYTFDYKNYMQQQKEIAKYFSADGWIAYSKALNQSKLPEVVQKNAYFVNAVATEPPKLITLD
PTHWQAIMPILVVYKNPQYEQKQNLKVVLGFTVASPGQGVRGFSVTSLQSTPISPPCQCKIEETPGNTKQGDAKQ
A,B
JCSG-418787
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Philadelphia 1 / ATCC 33152 / DSM 7513
sample
1
155
lpg0120
272624
Legionella pneumophila subsp. pneumophila
562
Escherichia Coli
PB1
Plasmid
Biological sequence
SpeedET
1
3.22
61.75
VAPOR DIFFUSION, SITTING DROP
7.5
0.085M HEPES pH 7.5, 15% glycerol, 1.7% polyethylene glycol 400, 1.7M ammonium sulfate
293
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
citation_author
pdbx_struct_oper_list
database_2
struct_ref_seq_dif
repository
Initial release
Database references
Derived calculations
Database references
1
0
2015-08-05
1
1
2018-01-24
1
2
2023-02-01
_citation_author.name
_pdbx_struct_oper_list.symmetry_operation
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2015-07-17
REL
REL
PGE
TRIETHYLENE GLYCOL
PEG
DI(HYDROXYETHYL)ETHER
SO4
SULFATE ION
HOH
water
THE CONSTRUCT (23-176) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
PGE
201
2
PGE
PGE
201
A
PGE
202
2
PGE
PGE
202
A
PEG
204
3
PEG
PEG
203
A
PEG
205
3
PEG
PEG
204
A
SO4
206
4
SO4
SO4
205
A
SO4
207
4
SO4
SO4
206
A
SO4
211
4
SO4
SO4
207
A
SO4
212
4
SO4
SO4
208
A
SO4
213
4
SO4
SO4
209
A
PGE
203
2
PGE
PGE
201
B
SO4
208
4
SO4
SO4
202
B
SO4
209
4
SO4
SO4
203
B
SO4
210
4
SO4
SO4
204
B
HOH
219
5
HOH
HOH
301
A
HOH
223
5
HOH
HOH
302
A
HOH
220
5
HOH
HOH
303
A
HOH
221
5
HOH
HOH
304
A
HOH
235
5
HOH
HOH
305
A
HOH
218
5
HOH
HOH
306
A
HOH
234
5
HOH
HOH
307
A
HOH
236
5
HOH
HOH
308
A
HOH
215
5
HOH
HOH
309
A
HOH
226
5
HOH
HOH
310
A
HOH
214
5
HOH
HOH
311
A
HOH
231
5
HOH
HOH
312
A
HOH
225
5
HOH
HOH
313
A
HOH
228
5
HOH
HOH
314
A
HOH
230
5
HOH
HOH
315
A
HOH
227
5
HOH
HOH
316
A
HOH
229
5
HOH
HOH
301
B
HOH
222
5
HOH
HOH
302
B
HOH
232
5
HOH
HOH
303
B
HOH
216
5
HOH
HOH
304
B
HOH
217
5
HOH
HOH
305
B
HOH
233
5
HOH
HOH
306
B
HOH
224
5
HOH
HOH
307
B
GLY
0
n
1
GLY
0
A
GLY
23
n
2
GLY
23
A
PRO
24
n
3
PRO
24
A
ASP
25
n
4
ASP
25
A
ARG
26
n
5
ARG
26
A
ALA
27
n
6
ALA
27
A
GLN
28
n
7
GLN
28
A
LEU
29
n
8
LEU
29
A
ALA
30
n
9
ALA
30
A
VAL
31
n
10
VAL
31
A
TRP
32
n
11
TRP
32
A
ALA
33
n
12
ALA
33
A
ASN
34
n
13
ASN
34
A
GLU
35
n
14
GLU
35
A
ALA
36
n
15
ALA
36
A
ILE
37
n
16
ILE
37
A
ILE
38
n
17
ILE
38
A
ALA
39
n
18
ALA
39
A
THR
40
n
19
THR
40
A
TYR
41
n
20
TYR
41
A
THR
42
n
21
THR
42
A
PHE
43
n
22
PHE
43
A
ASP
44
n
23
ASP
44
A
TYR
45
n
24
TYR
45
A
LYS
46
n
25
LYS
46
A
ASN
47
n
26
ASN
47
A
TYR
48
n
27
TYR
48
A
MSE
49
n
28
MSE
49
A
GLN
50
n
29
GLN
50
A
GLN
51
n
30
GLN
51
A
GLN
52
n
31
GLN
52
A
LYS
53
n
32
LYS
53
A
GLU
54
n
33
GLU
54
A
ILE
55
n
34
ILE
55
A
ALA
56
n
35
ALA
56
A
LYS
57
n
36
LYS
57
A
TYR
58
n
37
TYR
58
A
PHE
59
n
38
PHE
59
A
SER
60
n
39
SER
60
A
ALA
61
n
40
ALA
61
A
ASP
62
n
41
ASP
62
A
GLY
63
n
42
GLY
63
A
TRP
64
n
43
TRP
64
A
ILE
65
n
44
ILE
65
A
ALA
66
n
45
ALA
66
A
TYR
67
n
46
TYR
67
A
SER
68
n
47
SER
68
A
LYS
69
n
48
LYS
69
A
ALA
70
n
49
ALA
70
A
LEU
71
n
50
LEU
71
A
ASN
72
n
51
ASN
72
A
GLN
73
n
52
GLN
73
A
SER
74
n
53
SER
74
A
LYS
75
n
54
LYS
75
A
LEU
76
n
55
LEU
76
A
PRO
77
n
56
PRO
77
A
GLU
78
n
57
GLU
78
A
VAL
79
n
58
VAL
79
A
VAL
80
n
59
VAL
80
A
GLN
81
n
60
GLN
81
A
LYS
82
n
61
LYS
82
A
ASN
83
n
62
ASN
83
A
ALA
84
n
63
ALA
84
A
TYR
85
n
64
TYR
85
A
PHE
86
n
65
PHE
86
A
VAL
87
n
66
VAL
87
A
ASN
88
n
67
ASN
88
A
ALA
89
n
68
ALA
89
A
VAL
90
n
69
VAL
90
A
ALA
91
n
70
ALA
91
A
THR
92
n
71
THR
92
A
GLU
93
n
72
GLU
93
A
PRO
94
n
73
PRO
94
A
PRO
95
n
74
PRO
95
A
LYS
96
n
75
LYS
96
A
LEU
97
n
76
LEU
97
A
ILE
98
n
77
ILE
98
A
THR
99
n
78
THR
99
A
LEU
100
n
79
LEU
100
A
ASP
101
n
80
ASP
101
A
PRO
102
n
81
PRO
102
A
THR
103
n
82
THR
103
A
HIS
104
n
83
HIS
104
A
TRP
105
n
84
TRP
105
A
GLN
106
n
85
GLN
106
A
ALA
107
n
86
ALA
107
A
ILE
108
n
87
ILE
108
A
MSE
109
n
88
MSE
109
A
PRO
110
n
89
PRO
110
A
ILE
111
n
90
ILE
111
A
LEU
112
n
91
LEU
112
A
VAL
113
n
92
VAL
113
A
VAL
114
n
93
VAL
114
A
TYR
115
n
94
TYR
115
A
LYS
116
n
95
LYS
116
A
ASN
117
n
96
ASN
117
A
PRO
118
n
97
PRO
118
A
GLN
119
n
98
GLN
119
A
TYR
120
n
99
TYR
120
A
GLU
121
n
100
GLU
121
A
GLN
122
n
101
GLN
122
A
LYS
123
n
102
LYS
123
A
GLN
124
n
103
GLN
124
A
ASN
125
n
104
ASN
125
A
LEU
126
n
105
LEU
126
A
LYS
127
n
106
LYS
127
A
VAL
128
n
107
VAL
128
A
VAL
129
n
108
VAL
129
A
LEU
130
n
109
LEU
130
A
GLY
131
n
110
GLY
131
A
PHE
132
n
111
PHE
132
A
THR
133
n
112
THR
133
A
VAL
134
n
113
VAL
134
A
ALA
135
n
114
ALA
135
A
SER
136
n
115
SER
136
A
PRO
137
n
116
PRO
137
A
GLY
138
n
117
GLY
138
A
GLN
139
n
118
GLN
139
A
GLY
140
n
119
GLY
140
A
VAL
141
n
120
VAL
141
A
ARG
142
n
121
ARG
142
A
GLY
143
n
122
GLY
143
A
PHE
144
n
123
PHE
144
A
SER
145
n
124
SER
145
A
VAL
146
n
125
VAL
146
A
THR
147
n
126
THR
147
A
SER
148
n
127
SER
148
A
LEU
149
n
128
LEU
149
A
GLN
150
n
129
GLN
150
A
SER
151
n
130
SER
151
A
THR
152
n
131
THR
152
A
PRO
153
n
132
PRO
153
A
ILE
154
n
133
ILE
154
A
SER
155
n
134
SER
155
A
PRO
156
n
135
PRO
156
A
PRO
157
n
136
PRO
157
A
CYS
158
n
137
CYS
158
A
GLN
159
n
138
GLN
159
A
CYS
160
n
139
CYS
160
A
n
140
161
A
n
141
162
A
n
142
163
A
n
143
164
A
n
144
165
A
n
145
166
A
n
146
167
A
n
147
168
A
n
148
169
A
n
149
170
A
n
150
171
A
n
151
172
A
n
152
173
A
n
153
174
A
n
154
175
A
n
155
176
A
n
1
0
B
GLY
23
n
2
GLY
23
B
PRO
24
n
3
PRO
24
B
ASP
25
n
4
ASP
25
B
ARG
26
n
5
ARG
26
B
ALA
27
n
6
ALA
27
B
GLN
28
n
7
GLN
28
B
LEU
29
n
8
LEU
29
B
ALA
30
n
9
ALA
30
B
VAL
31
n
10
VAL
31
B
TRP
32
n
11
TRP
32
B
ALA
33
n
12
ALA
33
B
ASN
34
n
13
ASN
34
B
GLU
35
n
14
GLU
35
B
ALA
36
n
15
ALA
36
B
ILE
37
n
16
ILE
37
B
ILE
38
n
17
ILE
38
B
ALA
39
n
18
ALA
39
B
THR
40
n
19
THR
40
B
TYR
41
n
20
TYR
41
B
THR
42
n
21
THR
42
B
PHE
43
n
22
PHE
43
B
ASP
44
n
23
ASP
44
B
TYR
45
n
24
TYR
45
B
LYS
46
n
25
LYS
46
B
ASN
47
n
26
ASN
47
B
TYR
48
n
27
TYR
48
B
MSE
49
n
28
MSE
49
B
GLN
50
n
29
GLN
50
B
GLN
51
n
30
GLN
51
B
GLN
52
n
31
GLN
52
B
LYS
53
n
32
LYS
53
B
GLU
54
n
33
GLU
54
B
ILE
55
n
34
ILE
55
B
ALA
56
n
35
ALA
56
B
LYS
57
n
36
LYS
57
B
TYR
58
n
37
TYR
58
B
PHE
59
n
38
PHE
59
B
SER
60
n
39
SER
60
B
ALA
61
n
40
ALA
61
B
ASP
62
n
41
ASP
62
B
GLY
63
n
42
GLY
63
B
TRP
64
n
43
TRP
64
B
ILE
65
n
44
ILE
65
B
ALA
66
n
45
ALA
66
B
TYR
67
n
46
TYR
67
B
SER
68
n
47
SER
68
B
LYS
69
n
48
LYS
69
B
ALA
70
n
49
ALA
70
B
LEU
71
n
50
LEU
71
B
ASN
72
n
51
ASN
72
B
GLN
73
n
52
GLN
73
B
SER
74
n
53
SER
74
B
LYS
75
n
54
LYS
75
B
LEU
76
n
55
LEU
76
B
PRO
77
n
56
PRO
77
B
GLU
78
n
57
GLU
78
B
VAL
79
n
58
VAL
79
B
VAL
80
n
59
VAL
80
B
GLN
81
n
60
GLN
81
B
LYS
82
n
61
LYS
82
B
ASN
83
n
62
ASN
83
B
ALA
84
n
63
ALA
84
B
TYR
85
n
64
TYR
85
B
PHE
86
n
65
PHE
86
B
VAL
87
n
66
VAL
87
B
ASN
88
n
67
ASN
88
B
ALA
89
n
68
ALA
89
B
VAL
90
n
69
VAL
90
B
ALA
91
n
70
ALA
91
B
THR
92
n
71
THR
92
B
GLU
93
n
72
GLU
93
B
PRO
94
n
73
PRO
94
B
PRO
95
n
74
PRO
95
B
LYS
96
n
75
LYS
96
B
LEU
97
n
76
LEU
97
B
ILE
98
n
77
ILE
98
B
THR
99
n
78
THR
99
B
LEU
100
n
79
LEU
100
B
ASP
101
n
80
ASP
101
B
PRO
102
n
81
PRO
102
B
THR
103
n
82
THR
103
B
HIS
104
n
83
HIS
104
B
TRP
105
n
84
TRP
105
B
GLN
106
n
85
GLN
106
B
ALA
107
n
86
ALA
107
B
ILE
108
n
87
ILE
108
B
MSE
109
n
88
MSE
109
B
PRO
110
n
89
PRO
110
B
ILE
111
n
90
ILE
111
B
LEU
112
n
91
LEU
112
B
VAL
113
n
92
VAL
113
B
VAL
114
n
93
VAL
114
B
TYR
115
n
94
TYR
115
B
LYS
116
n
95
LYS
116
B
ASN
117
n
96
ASN
117
B
PRO
118
n
97
PRO
118
B
GLN
119
n
98
GLN
119
B
TYR
120
n
99
TYR
120
B
GLU
121
n
100
GLU
121
B
GLN
122
n
101
GLN
122
B
LYS
123
n
102
LYS
123
B
GLN
124
n
103
GLN
124
B
ASN
125
n
104
ASN
125
B
LEU
126
n
105
LEU
126
B
LYS
127
n
106
LYS
127
B
VAL
128
n
107
VAL
128
B
VAL
129
n
108
VAL
129
B
LEU
130
n
109
LEU
130
B
GLY
131
n
110
GLY
131
B
PHE
132
n
111
PHE
132
B
THR
133
n
112
THR
133
B
VAL
134
n
113
VAL
134
B
ALA
135
n
114
ALA
135
B
SER
136
n
115
SER
136
B
PRO
137
n
116
PRO
137
B
GLY
138
n
117
GLY
138
B
GLN
139
n
118
GLN
139
B
GLY
140
n
119
GLY
140
B
VAL
141
n
120
VAL
141
B
ARG
142
n
121
ARG
142
B
GLY
143
n
122
GLY
143
B
PHE
144
n
123
PHE
144
B
SER
145
n
124
SER
145
B
VAL
146
n
125
VAL
146
B
THR
147
n
126
THR
147
B
SER
148
n
127
SER
148
B
LEU
149
n
128
LEU
149
B
GLN
150
n
129
GLN
150
B
SER
151
n
130
SER
151
B
THR
152
n
131
THR
152
B
PRO
153
n
132
PRO
153
B
ILE
154
n
133
ILE
154
B
SER
155
n
134
SER
155
B
PRO
156
n
135
PRO
156
B
PRO
157
n
136
PRO
157
B
CYS
158
n
137
CYS
158
B
GLN
159
n
138
GLN
159
B
CYS
160
n
139
CYS
160
B
LYS
161
n
140
LYS
161
B
n
141
162
B
n
142
163
B
n
143
164
B
n
144
165
B
n
145
166
B
n
146
167
B
n
147
168
B
n
148
169
B
n
149
170
B
n
150
171
B
n
151
172
B
n
152
173
B
n
153
174
B
n
154
175
B
n
155
176
B
2.1582
1.1016
-0.1285
2.2717
0.1716
2.2033
0.1916
0.1536
0.2088
0.0455
0.0983
-0.2019
-0.1244
-0.2495
-0.2898
-0.0005
-0.1011
0.0054
-0.0933
0.1637
-0.0910
refined
32.0357
11.4729
14.9664
X-RAY DIFFRACTION
1.2553
0.1324
-0.4255
4.1793
-2.0265
3.2891
-0.0319
-0.0053
0.3016
0.2721
0.3877
0.5661
-0.4006
-0.3946
-0.3557
-0.0981
-0.0617
0.0957
-0.1024
0.1381
-0.0979
refined
14.6828
8.0286
31.7039
X-RAY DIFFRACTION
A
0
A
160
X-RAY DIFFRACTION
1
{A|0 - 160}
B
23
B
161
X-RAY DIFFRACTION
2
{B|23 - 161}
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
4
tetrameric
9030
-221
27860
A
MSE
49
modified residue
A
MSE
28
MET
A
MSE
109
modified residue
A
MSE
88
MET
B
MSE
49
modified residue
B
MSE
28
MET
B
MSE
109
modified residue
B
MSE
88
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/6
crystal symmetry operation
41.6905000000
72.2100641930
36.9715000000
A
N
PHE
43
A
N
PHE
22
A
O
VAL
87
A
O
VAL
66
A
N
ASN
88
A
N
ASN
67
A
O
VAL
114
A
O
VAL
93
A
O
HIS
104
A
O
HIS
83
A
N
LEU
100
A
N
LEU
79
A
N
PHE
43
A
N
PHE
22
A
O
VAL
87
A
O
VAL
66
A
N
ASN
88
A
N
ASN
67
A
O
VAL
114
A
O
VAL
93
A
N
ALA
107
A
N
ALA
86
A
O
LEU
130
A
O
LEU
109
A
N
VAL
129
A
N
VAL
108
A
O
GLN
150
A
O
GLN
129
B
N
PHE
43
B
N
PHE
22
B
O
VAL
87
B
O
VAL
66
B
N
ASN
88
B
N
ASN
67
B
O
VAL
114
B
O
VAL
93
B
N
ALA
107
B
N
ALA
86
B
O
LEU
130
B
O
LEU
109
B
N
VAL
129
B
N
VAL
108
B
O
GLN
150
B
O
GLN
129
B
N
LYS
96
B
N
LYS
75
B
O
ILE
108
B
O
ILE
87
B
N
ALA
107
B
N
ALA
86
B
O
LEU
130
B
O
LEU
109
B
N
LYS
123
B
N
LYS
102
B
O
CYS
158
B
O
CYS
137
1
A
SO4
207
I
SO4
1
A
CG
GLN
159
A
CG
GLN
138
1
Y
1
A
CD
GLN
159
A
CD
GLN
138
1
Y
1
A
OE1
GLN
159
A
OE1
GLN
138
1
Y
1
A
NE2
GLN
159
A
NE2
GLN
138
1
Y
1
A
SG
CYS
160
A
SG
CYS
139
1
Y
1
B
CG
LYS
161
B
CG
LYS
140
1
Y
1
B
CD
LYS
161
B
CD
LYS
140
1
Y
1
B
CE
LYS
161
B
CE
LYS
140
1
Y
1
B
NZ
LYS
161
B
NZ
LYS
140
1
Y
1
A
LYS
161
A
LYS
140
1
Y
1
A
ILE
162
A
ILE
141
1
Y
1
A
GLU
163
A
GLU
142
1
Y
1
A
GLU
164
A
GLU
143
1
Y
1
A
THR
165
A
THR
144
1
Y
1
A
PRO
166
A
PRO
145
1
Y
1
A
GLY
167
A
GLY
146
1
Y
1
A
ASN
168
A
ASN
147
1
Y
1
A
THR
169
A
THR
148
1
Y
1
A
LYS
170
A
LYS
149
1
Y
1
A
GLN
171
A
GLN
150
1
Y
1
A
GLY
172
A
GLY
151
1
Y
1
A
ASP
173
A
ASP
152
1
Y
1
A
ALA
174
A
ALA
153
1
Y
1
A
LYS
175
A
LYS
154
1
Y
1
A
GLN
176
A
GLN
155
1
Y
1
B
GLY
0
B
GLY
1
1
Y
1
B
ILE
162
B
ILE
141
1
Y
1
B
GLU
163
B
GLU
142
1
Y
1
B
GLU
164
B
GLU
143
1
Y
1
B
THR
165
B
THR
144
1
Y
1
B
PRO
166
B
PRO
145
1
Y
1
B
GLY
167
B
GLY
146
1
Y
1
B
ASN
168
B
ASN
147
1
Y
1
B
THR
169
B
THR
148
1
Y
1
B
LYS
170
B
LYS
149
1
Y
1
B
GLN
171
B
GLN
150
1
Y
1
B
GLY
172
B
GLY
151
1
Y
1
B
ASP
173
B
ASP
152
1
Y
1
B
ALA
174
B
ALA
153
1
Y
1
B
LYS
175
B
LYS
154
1
Y
1
B
GLN
176
B
GLN
155
1
Y
180.130
69.9986
34.910
-0.5014
0.0000
0.0000
-0.5014
0.0000
1.0027
0.9464
0.9328
1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. CONDITIONS. 3. PEG AND SO4 MODELED WERE PRESENT IN CRYO CONDITION. 4. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 5. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS).
0.2194
0.1917
0.1930
2.6500
29.018
690
13863
4.9800
98.8900
1.000
0.500
RANDOM
1
THROUGHOUT
0.000
MAD
0.401
2.6500
29.018
23
2287
84
0
2180
1026
SINUSOIDAL
2.000
57
HARMONIC
2.000
314
HARMONIC
5.000
2311
HARMONIC
20.000
297
SEMIHARMONIC
5.000
2691
SEMIHARMONIC
4.000
0.010
2311
HARMONIC
2.000
1.150
3142
HARMONIC
2.000
3.170
2.970
0.2056
0.2216
0.2206
2.8600
148
2635
2783
7
5.3200
98.8900
2.65
29.018
5CNL
13863
13863
0.041
0.155
0.149
1
4.786
14.600
194866
14.100
99.200
1.357
1.310
2.650
2.720
0.6
14456
995
0.352
1.357
1.310
1
2.300
14.500
99.000
1.118
1.079
2.720
2.790
0.7
14044
975
0.290
1.118
1.079
2.800
14.400
99.000
1.013
0.978
2.790
2.870
0.8
13724
945
0.262
1.013
0.978
3.000
14.500
99.200
0.740
0.715
2.870
2.960
1.1
13153
912
0.192
0.740
0.715
4.100
14.400
99.200
0.598
0.578
2.960
3.060
1.3
12832
887
0.155
0.598
0.578
5.100
14.500
99.200
0.466
0.450
3.060
3.170
1.7
12278
859
0.122
0.466
0.450
6.400
14.300
99.000
0.386
0.373
3.170
3.290
2.1
12043
845
0.101
0.386
0.373
7.600
14.300
99.600
0.270
0.261
3.290
3.420
3.0
11522
802
0.070
0.270
0.261
10.600
14.400
99.400
0.203
0.196
3.420
3.570
4.0
11087
781
0.053
0.203
0.196
13.400
14.200
99.400
0.171
0.165
3.570
3.750
4.6
10723
752
0.045
0.171
0.165
15.800
14.300
99.300
0.135
0.130
3.750
3.950
5.8
10079
716
0.036
0.135
0.130
19.500
14.100
99.400
0.107
0.103
3.950
4.190
7.1
9545
685
0.028
0.107
0.103
23.300
13.900
99.400
0.090
0.086
4.190
4.480
8.3
8923
634
0.024
0.090
0.086
28.100
14.100
99.400
0.075
0.073
4.480
4.840
9.9
8451
615
0.020
0.075
0.073
31.000
13.700
99.600
0.082
0.079
4.840
5.300
8.6
7660
559
0.022
0.082
0.079
28.700
13.700
99.500
0.091
0.088
5.300
5.930
8.2
6992
514
0.024
0.091
0.088
26.300
13.600
99.500
0.086
0.083
5.930
6.840
8.6
6195
463
0.023
0.086
0.083
28.200
13.400
99.400
0.065
0.062
6.840
8.380
10.3
5181
409
0.018
0.065
0.062
34.100
12.700
99.800
0.049
0.047
8.380
11.850
11.8
3928
325
0.014
0.049
0.047
41.800
12.100
99.700
0.043
0.041
11.850
29.018
14.3
2050
190
0.013
0.043
0.041
36.800
10.800
93.000
data extraction
PDB_EXTRACT
3.10
data reduction
MOSFLM
data scaling
SCALA
3.3.20
phasing
SHARP
phasing
SHELX
refinement
BUSTER
2.10.2
phasing
SHELXD
Crystal structure of an IcmL-like type IV secretion system protein (lpg0120) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1 at 2.65 A resolution
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
2
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
ASP
25
A
ASP
4
HELX_P
A
TYR
41
A
TYR
20
1
AA1
17
A
ASN
47
A
ASN
26
HELX_P
A
ALA
56
A
ALA
35
1
AA2
10
A
LYS
57
A
LYS
36
HELX_P
A
PHE
59
A
PHE
38
5
AA3
3
A
SER
60
A
SER
39
HELX_P
A
SER
74
A
SER
53
1
AA4
15
A
LYS
75
A
LYS
54
HELX_P
A
ASN
83
A
ASN
62
1
AA5
9
B
ASP
25
B
ASP
4
HELX_P
B
TYR
41
B
TYR
20
1
AA6
17
B
ASN
47
B
ASN
26
HELX_P
B
ALA
56
B
ALA
35
1
AA7
10
B
LYS
57
B
LYS
36
HELX_P
B
PHE
59
B
PHE
38
5
AA8
3
B
SER
60
B
SER
39
HELX_P
B
SER
74
B
SER
53
1
AA9
15
B
LYS
75
B
LYS
54
HELX_P
B
ASN
83
B
ASN
62
1
AB1
9
covale
1.350
both
A
TYR
48
A
C
TYR
27
1_555
A
MSE
49
A
N
MSE
28
1_555
covale
1.344
both
A
MSE
49
A
C
MSE
28
1_555
A
GLN
50
A
N
GLN
29
1_555
covale
1.333
both
A
ILE
108
A
C
ILE
87
1_555
A
MSE
109
A
N
MSE
88
1_555
covale
1.354
both
A
MSE
109
A
C
MSE
88
1_555
A
PRO
110
A
N
PRO
89
1_555
covale
1.340
both
B
TYR
48
B
C
TYR
27
1_555
B
MSE
49
B
N
MSE
28
1_555
covale
1.345
both
B
MSE
49
B
C
MSE
28
1_555
B
GLN
50
B
N
GLN
29
1_555
covale
1.335
both
B
ILE
108
B
C
ILE
87
1_555
B
MSE
109
B
N
MSE
88
1_555
covale
1.361
both
B
MSE
109
B
C
MSE
88
1_555
B
PRO
110
B
N
PRO
89
1_555
PROTEIN TRANSPORT
type IV secretion system, protein transport, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY
Q5ZZ91_LEGPH
UNP
1
23
Q5ZZ91
GPDRAQLAVWANEAIIATYTFDYKNYMQQQKEIAKYFSADGWIAYSKALNQSKLPEVVQKNAYFVNAVATEPPKLITLDP
THWQAIMPILVVYKNPQYEQKQNLKVVLGFTVASPGQGVRGFSVTSLQSTPISPPCQCKIEETPGNTKQGDAKQ
23
176
5CNL
23
176
Q5ZZ91
A
1
2
155
23
176
5CNL
23
176
Q5ZZ91
B
1
2
155
1
expression tag
GLY
0
5CNL
A
Q5ZZ91
UNP
1
2
expression tag
GLY
0
5CNL
B
Q5ZZ91
UNP
1
4
5
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
43
A
PHE
22
A
ASP
44
A
ASP
23
A
PHE
86
A
PHE
65
A
ALA
91
A
ALA
70
A
HIS
104
A
HIS
83
A
LYS
116
A
LYS
95
A
LYS
96
A
LYS
75
A
ASP
101
A
ASP
80
A
PHE
43
A
PHE
22
A
ASP
44
A
ASP
23
A
PHE
86
A
PHE
65
A
ALA
91
A
ALA
70
A
HIS
104
A
HIS
83
A
LYS
116
A
LYS
95
A
GLU
121
A
GLU
100
A
VAL
134
A
VAL
113
A
PHE
144
A
PHE
123
A
ILE
154
A
ILE
133
B
PHE
43
B
PHE
22
B
ASP
44
B
ASP
23
B
PHE
86
B
PHE
65
B
ALA
91
B
ALA
70
B
HIS
104
B
HIS
83
B
LYS
116
B
LYS
95
B
GLU
121
B
GLU
100
B
VAL
134
B
VAL
113
B
PHE
144
B
PHE
123
B
PRO
153
B
PRO
132
B
LYS
96
B
LYS
75
B
ASP
101
B
ASP
80
B
HIS
104
B
HIS
83
B
LYS
116
B
LYS
95
B
GLU
121
B
GLU
100
B
VAL
134
B
VAL
113
B
CYS
158
B
CYS
137
B
CYS
160
B
CYS
139
binding site for residue PGE A 201
A
PGE
201
Software
3
binding site for residue PGE A 202
A
PGE
202
Software
3
binding site for residue PEG A 203
A
PEG
203
Software
8
binding site for residue PEG A 204
A
PEG
204
Software
5
binding site for residue SO4 A 205
A
SO4
205
Software
3
binding site for residue SO4 A 206
A
SO4
206
Software
2
binding site for residue SO4 A 207
A
SO4
207
Software
4
binding site for residue SO4 A 208
A
SO4
208
Software
5
binding site for residue SO4 A 209
A
SO4
209
Software
3
binding site for residue PGE B 201
B
PGE
201
Software
4
binding site for residue SO4 B 202
B
SO4
202
Software
3
binding site for residue SO4 B 203
B
SO4
203
Software
3
binding site for residue SO4 B 204
B
SO4
204
Software
4
A
TYR
41
A
TYR
20
3
1_555
A
LEU
149
A
LEU
128
3
1_555
A
SER
151
A
SER
130
3
1_555
A
ASN
34
A
ASN
13
3
1_555
A
ALA
89
A
ALA
68
3
1_555
B
THR
92
B
THR
71
3
1_555
A
SER
60
A
SER
39
8
1_555
A
ALA
61
A
ALA
40
8
1_555
A
ASP
62
A
ASP
41
8
1_555
A
SER
136
A
SER
115
8
1_555
A
SER
136
A
SER
115
8
8_555
A
PRO
137
A
PRO
116
8
8_555
A
GLN
139
A
GLN
118
8
1_555
A
SER
145
A
SER
124
8
1_555
A
LEU
76
A
LEU
55
5
1_555
A
TYR
115
A
TYR
94
5
1_555
A
GLN
122
A
GLN
101
5
1_555
A
GLN
122
A
GLN
101
5
10_665
A
GLN
124
A
GLN
103
5
1_555
A
ILE
98
A
ILE
77
3
1_555
A
THR
99
A
THR
78
3
1_555
A
SO4
209
K
SO4
3
1_555
A
GLY
140
A
GLY
119
2
1_555
A
ARG
142
A
ARG
121
2
1_555
A
ILE
154
A
ILE
133
4
10_665
A
ILE
154
A
ILE
133
4
1_555
A
SER
155
A
SER
134
4
1_555
A
SER
155
A
SER
134
4
10_665
A
TYR
48
A
TYR
27
5
1_555
A
GLN
52
A
GLN
31
5
1_555
A
SER
68
A
SER
47
5
1_555
A
LEU
71
A
LEU
50
5
1_555
A
ASN
72
A
ASN
51
5
1_555
A
ARG
26
A
ARG
5
3
1_555
A
LEU
97
A
LEU
76
3
1_555
A
SO4
205
G
SO4
3
1_555
B
ARG
26
B
ARG
5
4
1_555
B
LEU
97
B
LEU
76
4
1_555
B
THR
99
B
THR
78
4
1_555
B
SO4
203
N
SO4
4
1_555
B
ARG
26
B
ARG
5
3
1_555
B
LYS
96
B
LYS
75
3
1_555
B
LEU
97
B
LEU
76
3
1_555
B
ASP
25
B
ASP
4
3
1_555
B
ARG
26
B
ARG
5
3
1_555
B
PGE
201
L
PGE
3
1_555
B
ALA
70
B
ALA
49
4
1_555
B
LEU
149
B
LEU
128
4
1_555
B
GLN
150
B
GLN
129
4
1_555
B
SER
151
B
SER
130
4
1_555
179
P 65 2 2