0.011993 0.006924 0.000000 0.000000 0.013848 0.000000 0.000000 0.000000 0.004508 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.000 90.000 120.000 83.381 83.381 221.829 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C4 H10 O3 106.120 DI(HYDROXYETHYL)ETHER non-polymer C6 H14 O4 150.173 TRIETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of an IcmL-like type IV secretion system protein (lpg0120) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1 at 2.65 A resolution 10.2210/pdb5cnl/pdb pdb_00005cnl 100 1 Vertical focusing mirror; double crystal Si(111) monochromator CCD 2015-03-25 MARMOSAIC 325 mm CCD double crystal Si(111) MAD M x-ray 1 0.95369 1.0 0.9793 1.0 0.9791 1.0 BL14-1 SSRL 0.95369,0.9793,0.9791 SYNCHROTRON SSRL BEAMLINE BL14-1 17305.326 IcmL-like 2 man polymer 150.173 TRIETHYLENE GLYCOL 3 syn non-polymer 106.120 DI(HYDROXYETHYL)ETHER 2 syn non-polymer 96.063 SULFATE ION 8 syn non-polymer 18.015 water 23 nat water no yes GGPDRAQLAVWANEAIIATYTFDYKNY(MSE)QQQKEIAKYFSADGWIAYSKALNQSKLPEVVQKNAYFVNAVATEPPKL ITLDPTHWQAI(MSE)PILVVYKNPQYEQKQNLKVVLGFTVASPGQGVRGFSVTSLQSTPISPPCQCKIEETPGNTKQGD AKQ GGPDRAQLAVWANEAIIATYTFDYKNYMQQQKEIAKYFSADGWIAYSKALNQSKLPEVVQKNAYFVNAVATEPPKLITLD PTHWQAIMPILVVYKNPQYEQKQNLKVVLGFTVASPGQGVRGFSVTSLQSTPISPPCQCKIEETPGNTKQGDAKQ A,B JCSG-418787 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Philadelphia 1 / ATCC 33152 / DSM 7513 sample 1 155 lpg0120 272624 Legionella pneumophila subsp. pneumophila 562 Escherichia Coli PB1 Plasmid Biological sequence SpeedET 1 3.22 61.75 VAPOR DIFFUSION, SITTING DROP 7.5 0.085M HEPES pH 7.5, 15% glycerol, 1.7% polyethylene glycol 400, 1.7M ammonium sulfate 293 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative citation_author pdbx_struct_oper_list database_2 struct_ref_seq_dif repository Initial release Database references Derived calculations Database references 1 0 2015-08-05 1 1 2018-01-24 1 2 2023-02-01 _citation_author.name _pdbx_struct_oper_list.symmetry_operation _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Y RCSB Y RCSB 2015-07-17 REL REL PGE TRIETHYLENE GLYCOL PEG DI(HYDROXYETHYL)ETHER SO4 SULFATE ION HOH water THE CONSTRUCT (23-176) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. PGE 201 2 PGE PGE 201 A PGE 202 2 PGE PGE 202 A PEG 204 3 PEG PEG 203 A PEG 205 3 PEG PEG 204 A SO4 206 4 SO4 SO4 205 A SO4 207 4 SO4 SO4 206 A SO4 211 4 SO4 SO4 207 A SO4 212 4 SO4 SO4 208 A SO4 213 4 SO4 SO4 209 A PGE 203 2 PGE PGE 201 B SO4 208 4 SO4 SO4 202 B SO4 209 4 SO4 SO4 203 B SO4 210 4 SO4 SO4 204 B HOH 219 5 HOH HOH 301 A HOH 223 5 HOH HOH 302 A HOH 220 5 HOH HOH 303 A HOH 221 5 HOH HOH 304 A HOH 235 5 HOH HOH 305 A HOH 218 5 HOH HOH 306 A HOH 234 5 HOH HOH 307 A HOH 236 5 HOH HOH 308 A HOH 215 5 HOH HOH 309 A HOH 226 5 HOH HOH 310 A HOH 214 5 HOH HOH 311 A HOH 231 5 HOH HOH 312 A HOH 225 5 HOH HOH 313 A HOH 228 5 HOH HOH 314 A HOH 230 5 HOH HOH 315 A HOH 227 5 HOH HOH 316 A HOH 229 5 HOH HOH 301 B HOH 222 5 HOH HOH 302 B HOH 232 5 HOH HOH 303 B HOH 216 5 HOH HOH 304 B HOH 217 5 HOH HOH 305 B HOH 233 5 HOH HOH 306 B HOH 224 5 HOH HOH 307 B GLY 0 n 1 GLY 0 A GLY 23 n 2 GLY 23 A PRO 24 n 3 PRO 24 A ASP 25 n 4 ASP 25 A ARG 26 n 5 ARG 26 A ALA 27 n 6 ALA 27 A GLN 28 n 7 GLN 28 A LEU 29 n 8 LEU 29 A ALA 30 n 9 ALA 30 A VAL 31 n 10 VAL 31 A TRP 32 n 11 TRP 32 A ALA 33 n 12 ALA 33 A ASN 34 n 13 ASN 34 A GLU 35 n 14 GLU 35 A ALA 36 n 15 ALA 36 A ILE 37 n 16 ILE 37 A ILE 38 n 17 ILE 38 A ALA 39 n 18 ALA 39 A THR 40 n 19 THR 40 A TYR 41 n 20 TYR 41 A THR 42 n 21 THR 42 A PHE 43 n 22 PHE 43 A ASP 44 n 23 ASP 44 A TYR 45 n 24 TYR 45 A LYS 46 n 25 LYS 46 A ASN 47 n 26 ASN 47 A TYR 48 n 27 TYR 48 A MSE 49 n 28 MSE 49 A GLN 50 n 29 GLN 50 A GLN 51 n 30 GLN 51 A GLN 52 n 31 GLN 52 A LYS 53 n 32 LYS 53 A GLU 54 n 33 GLU 54 A ILE 55 n 34 ILE 55 A ALA 56 n 35 ALA 56 A LYS 57 n 36 LYS 57 A TYR 58 n 37 TYR 58 A PHE 59 n 38 PHE 59 A SER 60 n 39 SER 60 A ALA 61 n 40 ALA 61 A ASP 62 n 41 ASP 62 A GLY 63 n 42 GLY 63 A TRP 64 n 43 TRP 64 A ILE 65 n 44 ILE 65 A ALA 66 n 45 ALA 66 A TYR 67 n 46 TYR 67 A SER 68 n 47 SER 68 A LYS 69 n 48 LYS 69 A ALA 70 n 49 ALA 70 A LEU 71 n 50 LEU 71 A ASN 72 n 51 ASN 72 A GLN 73 n 52 GLN 73 A SER 74 n 53 SER 74 A LYS 75 n 54 LYS 75 A LEU 76 n 55 LEU 76 A PRO 77 n 56 PRO 77 A GLU 78 n 57 GLU 78 A VAL 79 n 58 VAL 79 A VAL 80 n 59 VAL 80 A GLN 81 n 60 GLN 81 A LYS 82 n 61 LYS 82 A ASN 83 n 62 ASN 83 A ALA 84 n 63 ALA 84 A TYR 85 n 64 TYR 85 A PHE 86 n 65 PHE 86 A VAL 87 n 66 VAL 87 A ASN 88 n 67 ASN 88 A ALA 89 n 68 ALA 89 A VAL 90 n 69 VAL 90 A ALA 91 n 70 ALA 91 A THR 92 n 71 THR 92 A GLU 93 n 72 GLU 93 A PRO 94 n 73 PRO 94 A PRO 95 n 74 PRO 95 A LYS 96 n 75 LYS 96 A LEU 97 n 76 LEU 97 A ILE 98 n 77 ILE 98 A THR 99 n 78 THR 99 A LEU 100 n 79 LEU 100 A ASP 101 n 80 ASP 101 A PRO 102 n 81 PRO 102 A THR 103 n 82 THR 103 A HIS 104 n 83 HIS 104 A TRP 105 n 84 TRP 105 A GLN 106 n 85 GLN 106 A ALA 107 n 86 ALA 107 A ILE 108 n 87 ILE 108 A MSE 109 n 88 MSE 109 A PRO 110 n 89 PRO 110 A ILE 111 n 90 ILE 111 A LEU 112 n 91 LEU 112 A VAL 113 n 92 VAL 113 A VAL 114 n 93 VAL 114 A TYR 115 n 94 TYR 115 A LYS 116 n 95 LYS 116 A ASN 117 n 96 ASN 117 A PRO 118 n 97 PRO 118 A GLN 119 n 98 GLN 119 A TYR 120 n 99 TYR 120 A GLU 121 n 100 GLU 121 A GLN 122 n 101 GLN 122 A LYS 123 n 102 LYS 123 A GLN 124 n 103 GLN 124 A ASN 125 n 104 ASN 125 A LEU 126 n 105 LEU 126 A LYS 127 n 106 LYS 127 A VAL 128 n 107 VAL 128 A VAL 129 n 108 VAL 129 A LEU 130 n 109 LEU 130 A GLY 131 n 110 GLY 131 A PHE 132 n 111 PHE 132 A THR 133 n 112 THR 133 A VAL 134 n 113 VAL 134 A ALA 135 n 114 ALA 135 A SER 136 n 115 SER 136 A PRO 137 n 116 PRO 137 A GLY 138 n 117 GLY 138 A GLN 139 n 118 GLN 139 A GLY 140 n 119 GLY 140 A VAL 141 n 120 VAL 141 A ARG 142 n 121 ARG 142 A GLY 143 n 122 GLY 143 A PHE 144 n 123 PHE 144 A SER 145 n 124 SER 145 A VAL 146 n 125 VAL 146 A THR 147 n 126 THR 147 A SER 148 n 127 SER 148 A LEU 149 n 128 LEU 149 A GLN 150 n 129 GLN 150 A SER 151 n 130 SER 151 A THR 152 n 131 THR 152 A PRO 153 n 132 PRO 153 A ILE 154 n 133 ILE 154 A SER 155 n 134 SER 155 A PRO 156 n 135 PRO 156 A PRO 157 n 136 PRO 157 A CYS 158 n 137 CYS 158 A GLN 159 n 138 GLN 159 A CYS 160 n 139 CYS 160 A n 140 161 A n 141 162 A n 142 163 A n 143 164 A n 144 165 A n 145 166 A n 146 167 A n 147 168 A n 148 169 A n 149 170 A n 150 171 A n 151 172 A n 152 173 A n 153 174 A n 154 175 A n 155 176 A n 1 0 B GLY 23 n 2 GLY 23 B PRO 24 n 3 PRO 24 B ASP 25 n 4 ASP 25 B ARG 26 n 5 ARG 26 B ALA 27 n 6 ALA 27 B GLN 28 n 7 GLN 28 B LEU 29 n 8 LEU 29 B ALA 30 n 9 ALA 30 B VAL 31 n 10 VAL 31 B TRP 32 n 11 TRP 32 B ALA 33 n 12 ALA 33 B ASN 34 n 13 ASN 34 B GLU 35 n 14 GLU 35 B ALA 36 n 15 ALA 36 B ILE 37 n 16 ILE 37 B ILE 38 n 17 ILE 38 B ALA 39 n 18 ALA 39 B THR 40 n 19 THR 40 B TYR 41 n 20 TYR 41 B THR 42 n 21 THR 42 B PHE 43 n 22 PHE 43 B ASP 44 n 23 ASP 44 B TYR 45 n 24 TYR 45 B LYS 46 n 25 LYS 46 B ASN 47 n 26 ASN 47 B TYR 48 n 27 TYR 48 B MSE 49 n 28 MSE 49 B GLN 50 n 29 GLN 50 B GLN 51 n 30 GLN 51 B GLN 52 n 31 GLN 52 B LYS 53 n 32 LYS 53 B GLU 54 n 33 GLU 54 B ILE 55 n 34 ILE 55 B ALA 56 n 35 ALA 56 B LYS 57 n 36 LYS 57 B TYR 58 n 37 TYR 58 B PHE 59 n 38 PHE 59 B SER 60 n 39 SER 60 B ALA 61 n 40 ALA 61 B ASP 62 n 41 ASP 62 B GLY 63 n 42 GLY 63 B TRP 64 n 43 TRP 64 B ILE 65 n 44 ILE 65 B ALA 66 n 45 ALA 66 B TYR 67 n 46 TYR 67 B SER 68 n 47 SER 68 B LYS 69 n 48 LYS 69 B ALA 70 n 49 ALA 70 B LEU 71 n 50 LEU 71 B ASN 72 n 51 ASN 72 B GLN 73 n 52 GLN 73 B SER 74 n 53 SER 74 B LYS 75 n 54 LYS 75 B LEU 76 n 55 LEU 76 B PRO 77 n 56 PRO 77 B GLU 78 n 57 GLU 78 B VAL 79 n 58 VAL 79 B VAL 80 n 59 VAL 80 B GLN 81 n 60 GLN 81 B LYS 82 n 61 LYS 82 B ASN 83 n 62 ASN 83 B ALA 84 n 63 ALA 84 B TYR 85 n 64 TYR 85 B PHE 86 n 65 PHE 86 B VAL 87 n 66 VAL 87 B ASN 88 n 67 ASN 88 B ALA 89 n 68 ALA 89 B VAL 90 n 69 VAL 90 B ALA 91 n 70 ALA 91 B THR 92 n 71 THR 92 B GLU 93 n 72 GLU 93 B PRO 94 n 73 PRO 94 B PRO 95 n 74 PRO 95 B LYS 96 n 75 LYS 96 B LEU 97 n 76 LEU 97 B ILE 98 n 77 ILE 98 B THR 99 n 78 THR 99 B LEU 100 n 79 LEU 100 B ASP 101 n 80 ASP 101 B PRO 102 n 81 PRO 102 B THR 103 n 82 THR 103 B HIS 104 n 83 HIS 104 B TRP 105 n 84 TRP 105 B GLN 106 n 85 GLN 106 B ALA 107 n 86 ALA 107 B ILE 108 n 87 ILE 108 B MSE 109 n 88 MSE 109 B PRO 110 n 89 PRO 110 B ILE 111 n 90 ILE 111 B LEU 112 n 91 LEU 112 B VAL 113 n 92 VAL 113 B VAL 114 n 93 VAL 114 B TYR 115 n 94 TYR 115 B LYS 116 n 95 LYS 116 B ASN 117 n 96 ASN 117 B PRO 118 n 97 PRO 118 B GLN 119 n 98 GLN 119 B TYR 120 n 99 TYR 120 B GLU 121 n 100 GLU 121 B GLN 122 n 101 GLN 122 B LYS 123 n 102 LYS 123 B GLN 124 n 103 GLN 124 B ASN 125 n 104 ASN 125 B LEU 126 n 105 LEU 126 B LYS 127 n 106 LYS 127 B VAL 128 n 107 VAL 128 B VAL 129 n 108 VAL 129 B LEU 130 n 109 LEU 130 B GLY 131 n 110 GLY 131 B PHE 132 n 111 PHE 132 B THR 133 n 112 THR 133 B VAL 134 n 113 VAL 134 B ALA 135 n 114 ALA 135 B SER 136 n 115 SER 136 B PRO 137 n 116 PRO 137 B GLY 138 n 117 GLY 138 B GLN 139 n 118 GLN 139 B GLY 140 n 119 GLY 140 B VAL 141 n 120 VAL 141 B ARG 142 n 121 ARG 142 B GLY 143 n 122 GLY 143 B PHE 144 n 123 PHE 144 B SER 145 n 124 SER 145 B VAL 146 n 125 VAL 146 B THR 147 n 126 THR 147 B SER 148 n 127 SER 148 B LEU 149 n 128 LEU 149 B GLN 150 n 129 GLN 150 B SER 151 n 130 SER 151 B THR 152 n 131 THR 152 B PRO 153 n 132 PRO 153 B ILE 154 n 133 ILE 154 B SER 155 n 134 SER 155 B PRO 156 n 135 PRO 156 B PRO 157 n 136 PRO 157 B CYS 158 n 137 CYS 158 B GLN 159 n 138 GLN 159 B CYS 160 n 139 CYS 160 B LYS 161 n 140 LYS 161 B n 141 162 B n 142 163 B n 143 164 B n 144 165 B n 145 166 B n 146 167 B n 147 168 B n 148 169 B n 149 170 B n 150 171 B n 151 172 B n 152 173 B n 153 174 B n 154 175 B n 155 176 B 2.1582 1.1016 -0.1285 2.2717 0.1716 2.2033 0.1916 0.1536 0.2088 0.0455 0.0983 -0.2019 -0.1244 -0.2495 -0.2898 -0.0005 -0.1011 0.0054 -0.0933 0.1637 -0.0910 refined 32.0357 11.4729 14.9664 X-RAY DIFFRACTION 1.2553 0.1324 -0.4255 4.1793 -2.0265 3.2891 -0.0319 -0.0053 0.3016 0.2721 0.3877 0.5661 -0.4006 -0.3946 -0.3557 -0.0981 -0.0617 0.0957 -0.1024 0.1381 -0.0979 refined 14.6828 8.0286 31.7039 X-RAY DIFFRACTION A 0 A 160 X-RAY DIFFRACTION 1 {A|0 - 160} B 23 B 161 X-RAY DIFFRACTION 2 {B|23 - 161} author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric software_defined_assembly PISA 4 tetrameric 9030 -221 27860 A MSE 49 modified residue A MSE 28 MET A MSE 109 modified residue A MSE 88 MET B MSE 49 modified residue B MSE 28 MET B MSE 109 modified residue B MSE 88 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_665 -y+1,-x+1,-z+1/6 crystal symmetry operation 41.6905000000 72.2100641930 36.9715000000 A N PHE 43 A N PHE 22 A O VAL 87 A O VAL 66 A N ASN 88 A N ASN 67 A O VAL 114 A O VAL 93 A O HIS 104 A O HIS 83 A N LEU 100 A N LEU 79 A N PHE 43 A N PHE 22 A O VAL 87 A O VAL 66 A N ASN 88 A N ASN 67 A O VAL 114 A O VAL 93 A N ALA 107 A N ALA 86 A O LEU 130 A O LEU 109 A N VAL 129 A N VAL 108 A O GLN 150 A O GLN 129 B N PHE 43 B N PHE 22 B O VAL 87 B O VAL 66 B N ASN 88 B N ASN 67 B O VAL 114 B O VAL 93 B N ALA 107 B N ALA 86 B O LEU 130 B O LEU 109 B N VAL 129 B N VAL 108 B O GLN 150 B O GLN 129 B N LYS 96 B N LYS 75 B O ILE 108 B O ILE 87 B N ALA 107 B N ALA 86 B O LEU 130 B O LEU 109 B N LYS 123 B N LYS 102 B O CYS 158 B O CYS 137 1 A SO4 207 I SO4 1 A CG GLN 159 A CG GLN 138 1 Y 1 A CD GLN 159 A CD GLN 138 1 Y 1 A OE1 GLN 159 A OE1 GLN 138 1 Y 1 A NE2 GLN 159 A NE2 GLN 138 1 Y 1 A SG CYS 160 A SG CYS 139 1 Y 1 B CG LYS 161 B CG LYS 140 1 Y 1 B CD LYS 161 B CD LYS 140 1 Y 1 B CE LYS 161 B CE LYS 140 1 Y 1 B NZ LYS 161 B NZ LYS 140 1 Y 1 A LYS 161 A LYS 140 1 Y 1 A ILE 162 A ILE 141 1 Y 1 A GLU 163 A GLU 142 1 Y 1 A GLU 164 A GLU 143 1 Y 1 A THR 165 A THR 144 1 Y 1 A PRO 166 A PRO 145 1 Y 1 A GLY 167 A GLY 146 1 Y 1 A ASN 168 A ASN 147 1 Y 1 A THR 169 A THR 148 1 Y 1 A LYS 170 A LYS 149 1 Y 1 A GLN 171 A GLN 150 1 Y 1 A GLY 172 A GLY 151 1 Y 1 A ASP 173 A ASP 152 1 Y 1 A ALA 174 A ALA 153 1 Y 1 A LYS 175 A LYS 154 1 Y 1 A GLN 176 A GLN 155 1 Y 1 B GLY 0 B GLY 1 1 Y 1 B ILE 162 B ILE 141 1 Y 1 B GLU 163 B GLU 142 1 Y 1 B GLU 164 B GLU 143 1 Y 1 B THR 165 B THR 144 1 Y 1 B PRO 166 B PRO 145 1 Y 1 B GLY 167 B GLY 146 1 Y 1 B ASN 168 B ASN 147 1 Y 1 B THR 169 B THR 148 1 Y 1 B LYS 170 B LYS 149 1 Y 1 B GLN 171 B GLN 150 1 Y 1 B GLY 172 B GLY 151 1 Y 1 B ASP 173 B ASP 152 1 Y 1 B ALA 174 B ALA 153 1 Y 1 B LYS 175 B LYS 154 1 Y 1 B GLN 176 B GLN 155 1 Y 180.130 69.9986 34.910 -0.5014 0.0000 0.0000 -0.5014 0.0000 1.0027 0.9464 0.9328 1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. CONDITIONS. 3. PEG AND SO4 MODELED WERE PRESENT IN CRYO CONDITION. 4. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 5. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS). 0.2194 0.1917 0.1930 2.6500 29.018 690 13863 4.9800 98.8900 1.000 0.500 RANDOM 1 THROUGHOUT 0.000 MAD 0.401 2.6500 29.018 23 2287 84 0 2180 1026 SINUSOIDAL 2.000 57 HARMONIC 2.000 314 HARMONIC 5.000 2311 HARMONIC 20.000 297 SEMIHARMONIC 5.000 2691 SEMIHARMONIC 4.000 0.010 2311 HARMONIC 2.000 1.150 3142 HARMONIC 2.000 3.170 2.970 0.2056 0.2216 0.2206 2.8600 148 2635 2783 7 5.3200 98.8900 2.65 29.018 5CNL 13863 13863 0.041 0.155 0.149 1 4.786 14.600 194866 14.100 99.200 1.357 1.310 2.650 2.720 0.6 14456 995 0.352 1.357 1.310 1 2.300 14.500 99.000 1.118 1.079 2.720 2.790 0.7 14044 975 0.290 1.118 1.079 2.800 14.400 99.000 1.013 0.978 2.790 2.870 0.8 13724 945 0.262 1.013 0.978 3.000 14.500 99.200 0.740 0.715 2.870 2.960 1.1 13153 912 0.192 0.740 0.715 4.100 14.400 99.200 0.598 0.578 2.960 3.060 1.3 12832 887 0.155 0.598 0.578 5.100 14.500 99.200 0.466 0.450 3.060 3.170 1.7 12278 859 0.122 0.466 0.450 6.400 14.300 99.000 0.386 0.373 3.170 3.290 2.1 12043 845 0.101 0.386 0.373 7.600 14.300 99.600 0.270 0.261 3.290 3.420 3.0 11522 802 0.070 0.270 0.261 10.600 14.400 99.400 0.203 0.196 3.420 3.570 4.0 11087 781 0.053 0.203 0.196 13.400 14.200 99.400 0.171 0.165 3.570 3.750 4.6 10723 752 0.045 0.171 0.165 15.800 14.300 99.300 0.135 0.130 3.750 3.950 5.8 10079 716 0.036 0.135 0.130 19.500 14.100 99.400 0.107 0.103 3.950 4.190 7.1 9545 685 0.028 0.107 0.103 23.300 13.900 99.400 0.090 0.086 4.190 4.480 8.3 8923 634 0.024 0.090 0.086 28.100 14.100 99.400 0.075 0.073 4.480 4.840 9.9 8451 615 0.020 0.075 0.073 31.000 13.700 99.600 0.082 0.079 4.840 5.300 8.6 7660 559 0.022 0.082 0.079 28.700 13.700 99.500 0.091 0.088 5.300 5.930 8.2 6992 514 0.024 0.091 0.088 26.300 13.600 99.500 0.086 0.083 5.930 6.840 8.6 6195 463 0.023 0.086 0.083 28.200 13.400 99.400 0.065 0.062 6.840 8.380 10.3 5181 409 0.018 0.065 0.062 34.100 12.700 99.800 0.049 0.047 8.380 11.850 11.8 3928 325 0.014 0.049 0.047 41.800 12.100 99.700 0.043 0.041 11.850 29.018 14.3 2050 190 0.013 0.043 0.041 36.800 10.800 93.000 data extraction PDB_EXTRACT 3.10 data reduction MOSFLM data scaling SCALA 3.3.20 phasing SHARP phasing SHELX refinement BUSTER 2.10.2 phasing SHELXD Crystal structure of an IcmL-like type IV secretion system protein (lpg0120) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1 at 2.65 A resolution 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 2 N N 4 N N 4 N N 4 N N 5 N N 5 N N A ASP 25 A ASP 4 HELX_P A TYR 41 A TYR 20 1 AA1 17 A ASN 47 A ASN 26 HELX_P A ALA 56 A ALA 35 1 AA2 10 A LYS 57 A LYS 36 HELX_P A PHE 59 A PHE 38 5 AA3 3 A SER 60 A SER 39 HELX_P A SER 74 A SER 53 1 AA4 15 A LYS 75 A LYS 54 HELX_P A ASN 83 A ASN 62 1 AA5 9 B ASP 25 B ASP 4 HELX_P B TYR 41 B TYR 20 1 AA6 17 B ASN 47 B ASN 26 HELX_P B ALA 56 B ALA 35 1 AA7 10 B LYS 57 B LYS 36 HELX_P B PHE 59 B PHE 38 5 AA8 3 B SER 60 B SER 39 HELX_P B SER 74 B SER 53 1 AA9 15 B LYS 75 B LYS 54 HELX_P B ASN 83 B ASN 62 1 AB1 9 covale 1.350 both A TYR 48 A C TYR 27 1_555 A MSE 49 A N MSE 28 1_555 covale 1.344 both A MSE 49 A C MSE 28 1_555 A GLN 50 A N GLN 29 1_555 covale 1.333 both A ILE 108 A C ILE 87 1_555 A MSE 109 A N MSE 88 1_555 covale 1.354 both A MSE 109 A C MSE 88 1_555 A PRO 110 A N PRO 89 1_555 covale 1.340 both B TYR 48 B C TYR 27 1_555 B MSE 49 B N MSE 28 1_555 covale 1.345 both B MSE 49 B C MSE 28 1_555 B GLN 50 B N GLN 29 1_555 covale 1.335 both B ILE 108 B C ILE 87 1_555 B MSE 109 B N MSE 88 1_555 covale 1.361 both B MSE 109 B C MSE 88 1_555 B PRO 110 B N PRO 89 1_555 PROTEIN TRANSPORT type IV secretion system, protein transport, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY Q5ZZ91_LEGPH UNP 1 23 Q5ZZ91 GPDRAQLAVWANEAIIATYTFDYKNYMQQQKEIAKYFSADGWIAYSKALNQSKLPEVVQKNAYFVNAVATEPPKLITLDP THWQAIMPILVVYKNPQYEQKQNLKVVLGFTVASPGQGVRGFSVTSLQSTPISPPCQCKIEETPGNTKQGDAKQ 23 176 5CNL 23 176 Q5ZZ91 A 1 2 155 23 176 5CNL 23 176 Q5ZZ91 B 1 2 155 1 expression tag GLY 0 5CNL A Q5ZZ91 UNP 1 2 expression tag GLY 0 5CNL B Q5ZZ91 UNP 1 4 5 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 43 A PHE 22 A ASP 44 A ASP 23 A PHE 86 A PHE 65 A ALA 91 A ALA 70 A HIS 104 A HIS 83 A LYS 116 A LYS 95 A LYS 96 A LYS 75 A ASP 101 A ASP 80 A PHE 43 A PHE 22 A ASP 44 A ASP 23 A PHE 86 A PHE 65 A ALA 91 A ALA 70 A HIS 104 A HIS 83 A LYS 116 A LYS 95 A GLU 121 A GLU 100 A VAL 134 A VAL 113 A PHE 144 A PHE 123 A ILE 154 A ILE 133 B PHE 43 B PHE 22 B ASP 44 B ASP 23 B PHE 86 B PHE 65 B ALA 91 B ALA 70 B HIS 104 B HIS 83 B LYS 116 B LYS 95 B GLU 121 B GLU 100 B VAL 134 B VAL 113 B PHE 144 B PHE 123 B PRO 153 B PRO 132 B LYS 96 B LYS 75 B ASP 101 B ASP 80 B HIS 104 B HIS 83 B LYS 116 B LYS 95 B GLU 121 B GLU 100 B VAL 134 B VAL 113 B CYS 158 B CYS 137 B CYS 160 B CYS 139 binding site for residue PGE A 201 A PGE 201 Software 3 binding site for residue PGE A 202 A PGE 202 Software 3 binding site for residue PEG A 203 A PEG 203 Software 8 binding site for residue PEG A 204 A PEG 204 Software 5 binding site for residue SO4 A 205 A SO4 205 Software 3 binding site for residue SO4 A 206 A SO4 206 Software 2 binding site for residue SO4 A 207 A SO4 207 Software 4 binding site for residue SO4 A 208 A SO4 208 Software 5 binding site for residue SO4 A 209 A SO4 209 Software 3 binding site for residue PGE B 201 B PGE 201 Software 4 binding site for residue SO4 B 202 B SO4 202 Software 3 binding site for residue SO4 B 203 B SO4 203 Software 3 binding site for residue SO4 B 204 B SO4 204 Software 4 A TYR 41 A TYR 20 3 1_555 A LEU 149 A LEU 128 3 1_555 A SER 151 A SER 130 3 1_555 A ASN 34 A ASN 13 3 1_555 A ALA 89 A ALA 68 3 1_555 B THR 92 B THR 71 3 1_555 A SER 60 A SER 39 8 1_555 A ALA 61 A ALA 40 8 1_555 A ASP 62 A ASP 41 8 1_555 A SER 136 A SER 115 8 1_555 A SER 136 A SER 115 8 8_555 A PRO 137 A PRO 116 8 8_555 A GLN 139 A GLN 118 8 1_555 A SER 145 A SER 124 8 1_555 A LEU 76 A LEU 55 5 1_555 A TYR 115 A TYR 94 5 1_555 A GLN 122 A GLN 101 5 1_555 A GLN 122 A GLN 101 5 10_665 A GLN 124 A GLN 103 5 1_555 A ILE 98 A ILE 77 3 1_555 A THR 99 A THR 78 3 1_555 A SO4 209 K SO4 3 1_555 A GLY 140 A GLY 119 2 1_555 A ARG 142 A ARG 121 2 1_555 A ILE 154 A ILE 133 4 10_665 A ILE 154 A ILE 133 4 1_555 A SER 155 A SER 134 4 1_555 A SER 155 A SER 134 4 10_665 A TYR 48 A TYR 27 5 1_555 A GLN 52 A GLN 31 5 1_555 A SER 68 A SER 47 5 1_555 A LEU 71 A LEU 50 5 1_555 A ASN 72 A ASN 51 5 1_555 A ARG 26 A ARG 5 3 1_555 A LEU 97 A LEU 76 3 1_555 A SO4 205 G SO4 3 1_555 B ARG 26 B ARG 5 4 1_555 B LEU 97 B LEU 76 4 1_555 B THR 99 B THR 78 4 1_555 B SO4 203 N SO4 4 1_555 B ARG 26 B ARG 5 3 1_555 B LYS 96 B LYS 75 3 1_555 B LEU 97 B LEU 76 3 1_555 B ASP 25 B ASP 4 3 1_555 B ARG 26 B ARG 5 3 1_555 B PGE 201 L PGE 3 1_555 B ALA 70 B ALA 49 4 1_555 B LEU 149 B LEU 128 4 1_555 B GLN 150 B GLN 129 4 1_555 B SER 151 B SER 130 4 1_555 179 P 65 2 2