0.009178
0.005299
0.000000
-0.000000
0.010598
0.000000
0.000000
-0.000000
0.012087
0.000000
0.000000
0.000000
Baker, L.
Handing, K.B.
Utepbergenov, D.
Derewenda, U.
Derewenda, Z.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
0.0
90.000
0.0
120.000
0.0
108.957
0.01
108.957
0.01
82.736
0.01
850612.4
184210
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Acta Crystallogr D Struct Biol
2059-7983
72
49
58
10.1107/S2059798315021439
26894534
Molecular architecture of the nucleoprotein C-terminal domain from the Ebola and Marburg viruses.
2016
US
Acta Crystallogr. D Biol. Crystallogr.
ABCRE6
1399-0047
70
2420
2429
10.1107/S1399004714014710
25195755
The structure of the C-terminal domain of the Zaire ebolavirus nucleoprotein.
2014
10.2210/pdb5dsd/pdb
pdb_00005dsd
100
1
CCD
2014-08-14
RAYONIX MX300HE
0.50 degrees, -1.0 sec, detector distance 350.62 mm
\w scans
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.99
1.0
0.084
184210
21-ID-D
APS
0.99
SYNCHROTRON
APS BEAMLINE 21-ID-D
12267.726
Nucleoprotein
C-terminal domain (UNP residues 641-739)
1
man
polymer
92.094
GLYCEROL
2
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
112
nat
water
no
no
GAMANAQSEQSIAEMYQHILKTQGPFDAILYYHMMKEEPIIFSTSDGKEYTYPDSLEDEYPPWLSEKEAMNEDNRFITMD
GQQFYWPVMNHRNKFMAILQHHR
GAMANAQSEQSIAEMYQHILKTQGPFDAILYYHMMKEEPIIFSTSDGKEYTYPDSLEDEYPPWLSEKEAMNEDNRFITMD
GQQFYWPVMNHRNKFMAILQHHR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
103
NP, DH33_45404gpNP
565995
Bundibugyo virus
469008
Escherichia coli
BL21 (DE3) RIL
plasmid
Biological sequence
Parallel1-MBPHis
1
5.94
79
VAPOR DIFFUSION, SITTING DROP
8.5
Crystallization solution: 1.33 M LiSO4, 0.1 M Tris pH 8.5. 1:1 ratio (250 nL: 250 nL) of precipitant to protein (at a concentration of 13.9 mg/ml). 60 mcL reservoir. Protein purification buffer 50mM Tris-HCl, 150 mM NaCl; pH 7.5
293
pdbx_audit_support
pdbx_struct_oper_list
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Author supporting evidence
Derived calculations
Author supporting evidence
Data collection
Database references
Refinement description
1
0
2015-09-30
1
1
2016-03-02
1
2
2018-01-17
1
3
2020-01-01
1
4
2023-09-27
_pdbx_audit_support.funding_organization
_pdbx_struct_oper_list.symmetry_operation
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United States
Defense Threat Reduction Agency (DTRA)
HDTRA1-14-C-0006
2015-09-30
SPRSDE
The crystal structure of the C-terminal domain of Ebola (Zaire) nucleoprotein
The crystal structure of the C-terminal domain of Ebola (Zaire) nucleoprotein
N
RCSB
Y
RCSB
2015-09-17
REL
REL
GOL
GLYCEROL
CL
CHLORIDE ION
HOH
water
4QB0
PDB
experimental model
GOL
1
2
GOL
GOL
801
A
GOL
4
2
GOL
GOL
802
A
CL
1
3
CL
CL
803
A
HOH
173
4
HOH
HOH
901
A
HOH
164
4
HOH
HOH
902
A
HOH
41
4
HOH
HOH
903
A
HOH
178
4
HOH
HOH
904
A
HOH
107
4
HOH
HOH
905
A
HOH
58
4
HOH
HOH
906
A
HOH
162
4
HOH
HOH
907
A
HOH
160
4
HOH
HOH
908
A
HOH
99
4
HOH
HOH
909
A
HOH
49
4
HOH
HOH
910
A
HOH
35
4
HOH
HOH
911
A
HOH
138
4
HOH
HOH
912
A
HOH
47
4
HOH
HOH
913
A
HOH
4
4
HOH
HOH
914
A
HOH
144
4
HOH
HOH
915
A
HOH
90
4
HOH
HOH
916
A
HOH
25
4
HOH
HOH
917
A
HOH
18
4
HOH
HOH
918
A
HOH
92
4
HOH
HOH
919
A
HOH
141
4
HOH
HOH
920
A
HOH
2
4
HOH
HOH
921
A
HOH
97
4
HOH
HOH
922
A
HOH
48
4
HOH
HOH
923
A
HOH
17
4
HOH
HOH
924
A
HOH
91
4
HOH
HOH
925
A
HOH
156
4
HOH
HOH
926
A
HOH
16
4
HOH
HOH
927
A
HOH
184
4
HOH
HOH
928
A
HOH
10
4
HOH
HOH
929
A
HOH
151
4
HOH
HOH
930
A
HOH
5
4
HOH
HOH
931
A
HOH
136
4
HOH
HOH
932
A
HOH
176
4
HOH
HOH
933
A
HOH
135
4
HOH
HOH
934
A
HOH
161
4
HOH
HOH
935
A
HOH
187
4
HOH
HOH
936
A
HOH
12
4
HOH
HOH
937
A
HOH
143
4
HOH
HOH
938
A
HOH
31
4
HOH
HOH
939
A
HOH
59
4
HOH
HOH
940
A
HOH
189
4
HOH
HOH
941
A
HOH
152
4
HOH
HOH
942
A
HOH
86
4
HOH
HOH
943
A
HOH
8
4
HOH
HOH
944
A
HOH
159
4
HOH
HOH
945
A
HOH
175
4
HOH
HOH
946
A
HOH
32
4
HOH
HOH
947
A
HOH
157
4
HOH
HOH
948
A
HOH
163
4
HOH
HOH
949
A
HOH
102
4
HOH
HOH
950
A
HOH
67
4
HOH
HOH
951
A
HOH
80
4
HOH
HOH
952
A
HOH
105
4
HOH
HOH
953
A
HOH
181
4
HOH
HOH
954
A
HOH
167
4
HOH
HOH
955
A
HOH
110
4
HOH
HOH
956
A
HOH
73
4
HOH
HOH
957
A
HOH
171
4
HOH
HOH
958
A
HOH
158
4
HOH
HOH
959
A
HOH
186
4
HOH
HOH
960
A
HOH
30
4
HOH
HOH
961
A
HOH
191
4
HOH
HOH
962
A
HOH
170
4
HOH
HOH
963
A
HOH
168
4
HOH
HOH
964
A
HOH
53
4
HOH
HOH
965
A
HOH
147
4
HOH
HOH
966
A
HOH
149
4
HOH
HOH
967
A
HOH
154
4
HOH
HOH
968
A
HOH
19
4
HOH
HOH
969
A
HOH
174
4
HOH
HOH
970
A
HOH
95
4
HOH
HOH
971
A
HOH
193
4
HOH
HOH
972
A
HOH
52
4
HOH
HOH
973
A
HOH
183
4
HOH
HOH
974
A
HOH
57
4
HOH
HOH
975
A
HOH
46
4
HOH
HOH
976
A
HOH
172
4
HOH
HOH
977
A
HOH
179
4
HOH
HOH
978
A
HOH
88
4
HOH
HOH
979
A
HOH
130
4
HOH
HOH
980
A
HOH
192
4
HOH
HOH
981
A
HOH
165
4
HOH
HOH
982
A
HOH
26
4
HOH
HOH
983
A
HOH
134
4
HOH
HOH
984
A
HOH
71
4
HOH
HOH
985
A
HOH
188
4
HOH
HOH
986
A
HOH
129
4
HOH
HOH
987
A
HOH
94
4
HOH
HOH
988
A
HOH
103
4
HOH
HOH
989
A
HOH
150
4
HOH
HOH
990
A
HOH
177
4
HOH
HOH
991
A
HOH
28
4
HOH
HOH
992
A
HOH
146
4
HOH
HOH
993
A
HOH
180
4
HOH
HOH
994
A
HOH
166
4
HOH
HOH
995
A
HOH
117
4
HOH
HOH
996
A
HOH
145
4
HOH
HOH
997
A
HOH
182
4
HOH
HOH
998
A
HOH
100
4
HOH
HOH
999
A
HOH
153
4
HOH
HOH
1000
A
HOH
21
4
HOH
HOH
1001
A
HOH
140
4
HOH
HOH
1002
A
HOH
190
4
HOH
HOH
1003
A
HOH
120
4
HOH
HOH
1004
A
HOH
137
4
HOH
HOH
1005
A
HOH
142
4
HOH
HOH
1006
A
HOH
62
4
HOH
HOH
1007
A
HOH
106
4
HOH
HOH
1008
A
HOH
185
4
HOH
HOH
1009
A
HOH
39
4
HOH
HOH
1010
A
HOH
155
4
HOH
HOH
1011
A
HOH
169
4
HOH
HOH
1012
A
GLY
637
n
1
GLY
637
A
ALA
638
n
2
ALA
638
A
MET
639
n
3
MET
639
A
ALA
640
n
4
ALA
640
A
ASN
641
n
5
ASN
641
A
ALA
642
n
6
ALA
642
A
GLN
643
n
7
GLN
643
A
SER
644
n
8
SER
644
A
GLU
645
n
9
GLU
645
A
GLN
646
n
10
GLN
646
A
SER
647
n
11
SER
647
A
ILE
648
n
12
ILE
648
A
ALA
649
n
13
ALA
649
A
GLU
650
n
14
GLU
650
A
MET
651
n
15
MET
651
A
TYR
652
n
16
TYR
652
A
GLN
653
n
17
GLN
653
A
HIS
654
n
18
HIS
654
A
ILE
655
n
19
ILE
655
A
LEU
656
n
20
LEU
656
A
LYS
657
n
21
LYS
657
A
THR
658
n
22
THR
658
A
GLN
659
n
23
GLN
659
A
GLY
660
n
24
GLY
660
A
PRO
661
n
25
PRO
661
A
PHE
662
n
26
PHE
662
A
ASP
663
n
27
ASP
663
A
ALA
664
n
28
ALA
664
A
ILE
665
n
29
ILE
665
A
LEU
666
n
30
LEU
666
A
TYR
667
n
31
TYR
667
A
TYR
668
n
32
TYR
668
A
HIS
669
n
33
HIS
669
A
MET
670
n
34
MET
670
A
MET
671
n
35
MET
671
A
LYS
672
n
36
LYS
672
A
GLU
673
n
37
GLU
673
A
GLU
674
n
38
GLU
674
A
PRO
675
n
39
PRO
675
A
ILE
676
n
40
ILE
676
A
ILE
677
n
41
ILE
677
A
PHE
678
n
42
PHE
678
A
SER
679
n
43
SER
679
A
THR
680
n
44
THR
680
A
SER
681
n
45
SER
681
A
ASP
682
n
46
ASP
682
A
GLY
683
n
47
GLY
683
A
LYS
684
n
48
LYS
684
A
GLU
685
n
49
GLU
685
A
TYR
686
n
50
TYR
686
A
THR
687
n
51
THR
687
A
TYR
688
n
52
TYR
688
A
PRO
689
n
53
PRO
689
A
ASP
690
n
54
ASP
690
A
SER
691
n
55
SER
691
A
LEU
692
n
56
LEU
692
A
GLU
693
n
57
GLU
693
A
ASP
694
n
58
ASP
694
A
GLU
695
n
59
GLU
695
A
TYR
696
n
60
TYR
696
A
PRO
697
n
61
PRO
697
A
PRO
698
n
62
PRO
698
A
TRP
699
n
63
TRP
699
A
LEU
700
n
64
LEU
700
A
SER
701
n
65
SER
701
A
GLU
702
n
66
GLU
702
A
LYS
703
n
67
LYS
703
A
GLU
704
n
68
GLU
704
A
ALA
705
n
69
ALA
705
A
MET
706
n
70
MET
706
A
ASN
707
n
71
ASN
707
A
GLU
708
n
72
GLU
708
A
ASP
709
n
73
ASP
709
A
ASN
710
n
74
ASN
710
A
ARG
711
n
75
ARG
711
A
PHE
712
n
76
PHE
712
A
ILE
713
n
77
ILE
713
A
THR
714
n
78
THR
714
A
MET
715
n
79
MET
715
A
ASP
716
n
80
ASP
716
A
GLY
717
n
81
GLY
717
A
GLN
718
n
82
GLN
718
A
GLN
719
n
83
GLN
719
A
PHE
720
n
84
PHE
720
A
TYR
721
n
85
TYR
721
A
TRP
722
n
86
TRP
722
A
PRO
723
n
87
PRO
723
A
VAL
724
n
88
VAL
724
A
MET
725
n
89
MET
725
A
ASN
726
n
90
ASN
726
A
HIS
727
n
91
HIS
727
A
ARG
728
n
92
ARG
728
A
ASN
729
n
93
ASN
729
A
LYS
730
n
94
LYS
730
A
PHE
731
n
95
PHE
731
A
MET
732
n
96
MET
732
A
ALA
733
n
97
ALA
733
A
ILE
734
n
98
ILE
734
A
LEU
735
n
99
LEU
735
A
GLN
736
n
100
GLN
736
A
HIS
737
n
101
HIS
737
A
HIS
738
n
102
HIS
738
A
ARG
739
n
103
ARG
739
A
6.9694
-4.8245
-5.6534
10.9071
6.1529
22.4559
-0.2281
-0.0362
-0.5299
0.8334
-0.3809
0.7254
1.9299
-1.4008
0.6090
0.8102
-0.1367
0.0481
0.6334
-0.0990
0.0736
refined
-8.6520
66.0300
27.4230
X-RAY DIFFRACTION
5.2256
0.8350
-0.3475
13.2604
5.3052
6.0221
-0.0726
0.2498
-0.3232
-0.0731
-0.2151
0.6502
0.0341
-0.6076
0.2877
0.4049
0.0005
-0.0096
0.4396
-0.0658
0.0621
refined
-4.8680
57.1170
13.5580
X-RAY DIFFRACTION
3.4309
0.3435
2.0397
8.3868
0.2650
6.5105
-0.1390
0.0581
-0.5016
0.0040
-0.0394
0.1470
-0.2002
0.0832
0.1784
0.5052
-0.0008
-0.0070
0.4583
-0.0344
0.1231
refined
3.4450
55.9580
17.4600
X-RAY DIFFRACTION
4.0368
-2.6128
-1.7662
9.6449
2.1589
4.7331
-0.6915
-0.2001
-0.4183
0.6160
0.1832
0.3146
0.2982
-0.1934
0.5083
0.4192
0.0425
0.1337
0.4413
0.0155
0.0845
refined
5.8880
46.0570
24.5100
X-RAY DIFFRACTION
12.2717
-3.0546
-6.4357
9.0614
-0.4431
15.8036
-0.7594
-0.7271
-1.3264
0.7681
0.3045
0.2732
1.0297
0.1933
0.4548
0.4757
0.0380
0.3090
0.2858
0.0511
0.3764
refined
12.6620
31.1950
22.9920
X-RAY DIFFRACTION
5.5817
-5.3055
-0.7765
6.6894
1.0737
5.6811
-0.1280
0.6475
-1.0672
-0.2807
-0.2164
0.9318
0.2186
-0.4450
0.3445
0.5341
-0.1077
0.2018
0.4981
-0.1408
0.3339
refined
8.4510
38.7780
14.9760
X-RAY DIFFRACTION
A
637
A
645
X-RAY DIFFRACTION
1
A
646
A
661
X-RAY DIFFRACTION
2
A
662
A
671
X-RAY DIFFRACTION
3
A
672
A
698
X-RAY DIFFRACTION
4
A
699
A
715
X-RAY DIFFRACTION
5
A
716
A
739
X-RAY DIFFRACTION
6
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
2910
-35
12490
2050
-32
13350
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/3
crystal symmetry operation
54.4785000000
94.3595299201
27.5786666667
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_565
x,x-y+1,-z+2/3
crystal symmetry operation
-54.4785000000
94.3595299201
55.1573333333
A
N
ILE
676
A
N
ILE
40
A
O
TYR
688
A
O
TYR
52
A
N
ILE
713
A
N
ILE
77
A
O
PHE
720
A
O
PHE
84
1
A
ALA
638
-59.24
171.85
243.890
81.7800
46.220
0.6800
0.3400
0.0000
0.6800
-0.0000
-2.2000
0.9700
0.9640
U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2025
0.1676
0.1692
2.3100
80.0
604
11792
4.9000
94.0400
0.2071
0.1698
0.8163
9.7100
0.1170
0.1436
0.1412
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1440
0.1410
0.8000
0.8000
1.2000
4QB0
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.3100
80.0
113
987
115.80
79.01
13
0
861
103
0.008
0.019
908
0.001
0.020
806
1.253
1.936
1225
0.899
3.000
1866
5.678
5.000
104
40.102
24.902
51
13.360
15.000
153
10.807
15.000
3
0.071
0.200
119
0.005
0.021
1027
0.001
0.020
222
13.696
3.935
413
13.629
3.925
412
14.363
5.917
515
0.3120
0.2780
2.3720
27
534
561
20
59.4900
2.30
80.00
5DSD
12398
0.084
1
31.340
20.3
14.8
94.3
0.432
2.30
2.38
1.9
0.432
1
7.1
64.7
data extraction
PDB_EXTRACT
3.15
refinement
REFMAC
5.8.0103
data collection
SBC-Collect
phasing
HKL-3000
data scaling
SCALEPACK
model building
PHENIX
data reduction
HKL-3000
model building
Coot
The crystal structure of the C-terminal domain of Ebola (Bundibugyo) nucleoprotein
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
SER
644
A
SER
8
HELX_P
A
GLN
659
A
GLN
23
1
AA1
16
A
GLY
660
A
GLY
24
HELX_P
A
GLU
673
A
GLU
37
1
AA2
14
A
PRO
689
A
PRO
53
HELX_P
A
GLU
693
A
GLU
57
5
AA3
5
A
LYS
703
A
LYS
67
HELX_P
A
ASN
710
A
ASN
74
5
AA4
8
A
PRO
723
A
PRO
87
HELX_P
A
MET
725
A
MET
89
5
AA5
3
A
ASN
726
A
ASN
90
HELX_P
A
HIS
738
A
HIS
102
1
AA6
13
VIRAL PROTEIN
viral protein, Filoviridae
A
TYR
688
A
TYR
52
1
A
PRO
689
A
PRO
53
3.93
B8XCM7_9MONO
UNP
1
641
B8XCM7
NAQSEQSIAEMYQHILKTQGPFDAILYYHMMKEEPIIFSTSDGKEYTYPDSLEDEYPPWLSEKEAMNEDNRFITMDGQQF
YWPVMNHRNKFMAILQHHR
641
739
5DSD
641
739
B8XCM7
A
1
5
103
1
expression tag
GLY
637
5DSD
A
B8XCM7
UNP
1
1
expression tag
ALA
638
5DSD
A
B8XCM7
UNP
2
1
expression tag
MET
639
5DSD
A
B8XCM7
UNP
3
1
expression tag
ALA
640
5DSD
A
B8XCM7
UNP
4
2
2
anti-parallel
anti-parallel
A
ILE
676
A
ILE
40
A
SER
679
A
SER
43
A
GLU
685
A
GLU
49
A
TYR
688
A
TYR
52
A
PHE
712
A
PHE
76
A
THR
714
A
THR
78
A
GLN
719
A
GLN
83
A
TYR
721
A
TYR
85
binding site for residue GOL A 801
A
GOL
801
Software
2
binding site for residue GOL A 802
A
GOL
802
Software
5
binding site for residue CL A 803
A
CL
803
Software
1
A
LYS
703
A
LYS
67
2
1_555
A
ASN
707
A
ASN
71
2
1_555
A
ASN
726
A
ASN
90
5
1_555
A
ARG
728
A
ARG
92
5
1_555
A
HOH
927
E
HOH
5
1_555
A
HOH
936
E
HOH
5
1_555
A
HOH
1009
E
HOH
5
1_555
A
SER
679
A
SER
43
1
12_565
181
P 64 2 2