0.019348
0.000000
0.000000
-0.000000
0.016611
0.000000
0.000000
-0.000000
0.010388
0.000000
0.000000
0.000000
Chang, C.
Endres, L.
Endres, M.
SACCHETTINI, J.
JOACHIMIAK, A.
Midwest Center for Structural Genomics (MCSG)
Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MTBI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
51.684
60.202
96.268
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To Be Published
0353
Crystal structure of N-terminal domain of cytoplasmic peptidase PepQ from Mycobacterium tuberculosis H37Rv
100
1
CCD
2013-06-15
ADSC QUANTUM 315r
Si(111) double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.97924
1.0
19-ID
APS
0.97924
SYNCHROTRON
APS BEAMLINE 19-ID
13824.309
Xaa-Pro dipeptidase
2
man
polymer
18.015
water
432
nat
water
no
yes
SNARRDKLKAQIAASGLDA(MSE)LISDLINVRYLSGFSGSNGALLVFADERDAVLATDGRYRTQAASQAPDLEVAIERA
VGRYLAGRAGEAGVGKLGFESHVVTVDGLDALAGALEGKNTELVRASGTVESLREV
SNARRDKLKAQIAASGLDAMLISDLINVRYLSGFSGSNGALLVFADERDAVLATDGRYRTQAASQAPDLEVAIERAVGRY
LAGRAGEAGVGKLGFESHVVTVDGLDALAGALEGKNTELVRASGTVESLREV
A,B
MCSG-APC112005
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 25177 / H37Ra
sample
1
132
pepQ, MRA_2563
419947
Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
562
Escherichia coli
plasmid
Biological sequence
pMCSG68
1
2.72
54.74
VAPOR DIFFUSION, SITTING DROP
6.5
0.1 MBis-Tris, 20% PEG MME 5000
277
Midwest Center for Structural Genomics
MCSG
PSI:Biology
Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors
MTBI
PSI:Biology
repository
Initial release
1
0
2015-10-14
Y
RCSB
Y
RCSB
2015-09-30
REL
REL
1
B
O
HOH
428
6.05
1
B
O
HOH
429
6.16
1
B
O
HOH
430
6.33
1
B
O
HOH
431
6.34
1
B
O
HOH
432
7.09
HOH
water
HOH
328
2
HOH
HOH
201
A
HOH
449
2
HOH
HOH
202
A
HOH
29
2
HOH
HOH
203
A
HOH
309
2
HOH
HOH
204
A
HOH
265
2
HOH
HOH
205
A
HOH
357
2
HOH
HOH
206
A
HOH
460
2
HOH
HOH
207
A
HOH
361
2
HOH
HOH
208
A
HOH
347
2
HOH
HOH
209
A
HOH
228
2
HOH
HOH
210
A
HOH
202
2
HOH
HOH
211
A
HOH
72
2
HOH
HOH
212
A
HOH
176
2
HOH
HOH
213
A
HOH
369
2
HOH
HOH
214
A
HOH
352
2
HOH
HOH
215
A
HOH
260
2
HOH
HOH
216
A
HOH
109
2
HOH
HOH
217
A
HOH
223
2
HOH
HOH
218
A
HOH
69
2
HOH
HOH
219
A
HOH
130
2
HOH
HOH
220
A
HOH
459
2
HOH
HOH
221
A
HOH
101
2
HOH
HOH
222
A
HOH
2
2
HOH
HOH
223
A
HOH
104
2
HOH
HOH
224
A
HOH
261
2
HOH
HOH
225
A
HOH
24
2
HOH
HOH
226
A
HOH
76
2
HOH
HOH
227
A
HOH
99
2
HOH
HOH
228
A
HOH
46
2
HOH
HOH
229
A
HOH
209
2
HOH
HOH
230
A
HOH
348
2
HOH
HOH
231
A
HOH
125
2
HOH
HOH
232
A
HOH
39
2
HOH
HOH
233
A
HOH
133
2
HOH
HOH
234
A
HOH
458
2
HOH
HOH
235
A
HOH
208
2
HOH
HOH
236
A
HOH
329
2
HOH
HOH
237
A
HOH
77
2
HOH
HOH
238
A
HOH
34
2
HOH
HOH
239
A
HOH
286
2
HOH
HOH
240
A
HOH
17
2
HOH
HOH
241
A
HOH
4
2
HOH
HOH
242
A
HOH
377
2
HOH
HOH
243
A
HOH
23
2
HOH
HOH
244
A
HOH
267
2
HOH
HOH
245
A
HOH
412
2
HOH
HOH
246
A
HOH
105
2
HOH
HOH
247
A
HOH
408
2
HOH
HOH
248
A
HOH
33
2
HOH
HOH
249
A
HOH
227
2
HOH
HOH
250
A
HOH
418
2
HOH
HOH
251
A
HOH
186
2
HOH
HOH
252
A
HOH
9
2
HOH
HOH
253
A
HOH
345
2
HOH
HOH
254
A
HOH
415
2
HOH
HOH
255
A
HOH
251
2
HOH
HOH
256
A
HOH
247
2
HOH
HOH
257
A
HOH
82
2
HOH
HOH
258
A
HOH
353
2
HOH
HOH
259
A
HOH
334
2
HOH
HOH
260
A
HOH
231
2
HOH
HOH
261
A
HOH
276
2
HOH
HOH
262
A
HOH
248
2
HOH
HOH
263
A
HOH
217
2
HOH
HOH
264
A
HOH
103
2
HOH
HOH
265
A
HOH
92
2
HOH
HOH
266
A
HOH
47
2
HOH
HOH
267
A
HOH
20
2
HOH
HOH
268
A
HOH
351
2
HOH
HOH
269
A
HOH
45
2
HOH
HOH
270
A
HOH
407
2
HOH
HOH
271
A
HOH
187
2
HOH
HOH
272
A
HOH
289
2
HOH
HOH
273
A
HOH
375
2
HOH
HOH
274
A
HOH
66
2
HOH
HOH
275
A
HOH
292
2
HOH
HOH
276
A
HOH
204
2
HOH
HOH
277
A
HOH
236
2
HOH
HOH
278
A
HOH
339
2
HOH
HOH
279
A
HOH
95
2
HOH
HOH
280
A
HOH
14
2
HOH
HOH
281
A
HOH
197
2
HOH
HOH
282
A
HOH
131
2
HOH
HOH
283
A
HOH
167
2
HOH
HOH
284
A
HOH
116
2
HOH
HOH
285
A
HOH
52
2
HOH
HOH
286
A
HOH
244
2
HOH
HOH
287
A
HOH
156
2
HOH
HOH
288
A
HOH
283
2
HOH
HOH
289
A
HOH
381
2
HOH
HOH
290
A
HOH
60
2
HOH
HOH
291
A
HOH
111
2
HOH
HOH
292
A
HOH
330
2
HOH
HOH
293
A
HOH
170
2
HOH
HOH
294
A
HOH
38
2
HOH
HOH
295
A
HOH
142
2
HOH
HOH
296
A
HOH
136
2
HOH
HOH
297
A
HOH
237
2
HOH
HOH
298
A
HOH
102
2
HOH
HOH
299
A
HOH
207
2
HOH
HOH
300
A
HOH
149
2
HOH
HOH
301
A
HOH
363
2
HOH
HOH
302
A
HOH
11
2
HOH
HOH
303
A
HOH
435
2
HOH
HOH
304
A
HOH
128
2
HOH
HOH
305
A
HOH
18
2
HOH
HOH
306
A
HOH
81
2
HOH
HOH
307
A
HOH
285
2
HOH
HOH
308
A
HOH
96
2
HOH
HOH
309
A
HOH
367
2
HOH
HOH
310
A
HOH
135
2
HOH
HOH
311
A
HOH
79
2
HOH
HOH
312
A
HOH
182
2
HOH
HOH
313
A
HOH
139
2
HOH
HOH
314
A
HOH
137
2
HOH
HOH
315
A
HOH
179
2
HOH
HOH
316
A
HOH
15
2
HOH
HOH
317
A
HOH
346
2
HOH
HOH
318
A
HOH
447
2
HOH
HOH
319
A
HOH
57
2
HOH
HOH
320
A
HOH
232
2
HOH
HOH
321
A
HOH
411
2
HOH
HOH
322
A
HOH
110
2
HOH
HOH
323
A
HOH
333
2
HOH
HOH
324
A
HOH
54
2
HOH
HOH
325
A
HOH
86
2
HOH
HOH
326
A
HOH
53
2
HOH
HOH
327
A
HOH
358
2
HOH
HOH
328
A
HOH
58
2
HOH
HOH
329
A
HOH
400
2
HOH
HOH
330
A
HOH
75
2
HOH
HOH
331
A
HOH
240
2
HOH
HOH
332
A
HOH
252
2
HOH
HOH
333
A
HOH
175
2
HOH
HOH
334
A
HOH
80
2
HOH
HOH
335
A
HOH
385
2
HOH
HOH
336
A
HOH
89
2
HOH
HOH
337
A
HOH
166
2
HOH
HOH
338
A
HOH
25
2
HOH
HOH
339
A
HOH
325
2
HOH
HOH
340
A
HOH
384
2
HOH
HOH
341
A
HOH
336
2
HOH
HOH
342
A
HOH
434
2
HOH
HOH
343
A
HOH
155
2
HOH
HOH
344
A
HOH
461
2
HOH
HOH
345
A
HOH
327
2
HOH
HOH
346
A
HOH
431
2
HOH
HOH
347
A
HOH
423
2
HOH
HOH
348
A
HOH
259
2
HOH
HOH
349
A
HOH
220
2
HOH
HOH
350
A
HOH
206
2
HOH
HOH
351
A
HOH
383
2
HOH
HOH
352
A
HOH
382
2
HOH
HOH
353
A
HOH
146
2
HOH
HOH
354
A
HOH
374
2
HOH
HOH
355
A
HOH
324
2
HOH
HOH
356
A
HOH
174
2
HOH
HOH
357
A
HOH
195
2
HOH
HOH
358
A
HOH
199
2
HOH
HOH
359
A
HOH
280
2
HOH
HOH
360
A
HOH
293
2
HOH
HOH
361
A
HOH
203
2
HOH
HOH
362
A
HOH
453
2
HOH
HOH
363
A
HOH
441
2
HOH
HOH
364
A
HOH
269
2
HOH
HOH
365
A
HOH
396
2
HOH
HOH
366
A
HOH
438
2
HOH
HOH
367
A
HOH
398
2
HOH
HOH
368
A
HOH
307
2
HOH
HOH
369
A
HOH
299
2
HOH
HOH
370
A
HOH
425
2
HOH
HOH
371
A
HOH
164
2
HOH
HOH
372
A
HOH
183
2
HOH
HOH
373
A
HOH
296
2
HOH
HOH
374
A
HOH
241
2
HOH
HOH
375
A
HOH
354
2
HOH
HOH
376
A
HOH
318
2
HOH
HOH
377
A
HOH
399
2
HOH
HOH
378
A
HOH
294
2
HOH
HOH
379
A
HOH
401
2
HOH
HOH
380
A
HOH
173
2
HOH
HOH
381
A
HOH
144
2
HOH
HOH
382
A
HOH
310
2
HOH
HOH
383
A
HOH
274
2
HOH
HOH
384
A
HOH
422
2
HOH
HOH
385
A
HOH
300
2
HOH
HOH
386
A
HOH
145
2
HOH
HOH
387
A
HOH
451
2
HOH
HOH
388
A
HOH
271
2
HOH
HOH
389
A
HOH
143
2
HOH
HOH
390
A
HOH
297
2
HOH
HOH
391
A
HOH
239
2
HOH
HOH
392
A
HOH
464
2
HOH
HOH
393
A
HOH
404
2
HOH
HOH
394
A
HOH
424
2
HOH
HOH
395
A
HOH
316
2
HOH
HOH
396
A
HOH
249
2
HOH
HOH
397
A
HOH
141
2
HOH
HOH
398
A
HOH
303
2
HOH
HOH
399
A
HOH
282
2
HOH
HOH
400
A
HOH
466
2
HOH
HOH
201
B
HOH
410
2
HOH
HOH
202
B
HOH
26
2
HOH
HOH
203
B
HOH
194
2
HOH
HOH
204
B
HOH
326
2
HOH
HOH
205
B
HOH
270
2
HOH
HOH
206
B
HOH
73
2
HOH
HOH
207
B
HOH
196
2
HOH
HOH
208
B
HOH
152
2
HOH
HOH
209
B
HOH
238
2
HOH
HOH
210
B
HOH
178
2
HOH
HOH
211
B
HOH
78
2
HOH
HOH
212
B
HOH
12
2
HOH
HOH
213
B
HOH
158
2
HOH
HOH
214
B
HOH
344
2
HOH
HOH
215
B
HOH
44
2
HOH
HOH
216
B
HOH
93
2
HOH
HOH
217
B
HOH
198
2
HOH
HOH
218
B
HOH
359
2
HOH
HOH
219
B
HOH
48
2
HOH
HOH
220
B
HOH
193
2
HOH
HOH
221
B
HOH
120
2
HOH
HOH
222
B
HOH
180
2
HOH
HOH
223
B
HOH
49
2
HOH
HOH
224
B
HOH
35
2
HOH
HOH
225
B
HOH
63
2
HOH
HOH
226
B
HOH
222
2
HOH
HOH
227
B
HOH
70
2
HOH
HOH
228
B
HOH
350
2
HOH
HOH
229
B
HOH
151
2
HOH
HOH
230
B
HOH
61
2
HOH
HOH
231
B
HOH
184
2
HOH
HOH
232
B
HOH
245
2
HOH
HOH
233
B
HOH
379
2
HOH
HOH
234
B
HOH
114
2
HOH
HOH
235
B
HOH
56
2
HOH
HOH
236
B
HOH
281
2
HOH
HOH
237
B
HOH
224
2
HOH
HOH
238
B
HOH
218
2
HOH
HOH
239
B
HOH
119
2
HOH
HOH
240
B
HOH
64
2
HOH
HOH
241
B
HOH
106
2
HOH
HOH
242
B
HOH
138
2
HOH
HOH
243
B
HOH
177
2
HOH
HOH
244
B
HOH
181
2
HOH
HOH
245
B
HOH
6
2
HOH
HOH
246
B
HOH
28
2
HOH
HOH
247
B
HOH
42
2
HOH
HOH
248
B
HOH
107
2
HOH
HOH
249
B
HOH
1
2
HOH
HOH
250
B
HOH
100
2
HOH
HOH
251
B
HOH
165
2
HOH
HOH
252
B
HOH
74
2
HOH
HOH
253
B
HOH
62
2
HOH
HOH
254
B
HOH
279
2
HOH
HOH
255
B
HOH
192
2
HOH
HOH
256
B
HOH
448
2
HOH
HOH
257
B
HOH
8
2
HOH
HOH
258
B
HOH
27
2
HOH
HOH
259
B
HOH
433
2
HOH
HOH
260
B
HOH
287
2
HOH
HOH
261
B
HOH
312
2
HOH
HOH
262
B
HOH
91
2
HOH
HOH
263
B
HOH
30
2
HOH
HOH
264
B
HOH
387
2
HOH
HOH
265
B
HOH
277
2
HOH
HOH
266
B
HOH
242
2
HOH
HOH
267
B
HOH
19
2
HOH
HOH
268
B
HOH
162
2
HOH
HOH
269
B
HOH
214
2
HOH
HOH
270
B
HOH
67
2
HOH
HOH
271
B
HOH
129
2
HOH
HOH
272
B
HOH
370
2
HOH
HOH
273
B
HOH
36
2
HOH
HOH
274
B
HOH
406
2
HOH
HOH
275
B
HOH
121
2
HOH
HOH
276
B
HOH
212
2
HOH
HOH
277
B
HOH
43
2
HOH
HOH
278
B
HOH
32
2
HOH
HOH
279
B
HOH
168
2
HOH
HOH
280
B
HOH
85
2
HOH
HOH
281
B
HOH
134
2
HOH
HOH
282
B
HOH
140
2
HOH
HOH
283
B
HOH
59
2
HOH
HOH
284
B
HOH
55
2
HOH
HOH
285
B
HOH
201
2
HOH
HOH
286
B
HOH
409
2
HOH
HOH
287
B
HOH
37
2
HOH
HOH
288
B
HOH
233
2
HOH
HOH
289
B
HOH
160
2
HOH
HOH
290
B
HOH
436
2
HOH
HOH
291
B
HOH
127
2
HOH
HOH
292
B
HOH
445
2
HOH
HOH
293
B
HOH
157
2
HOH
HOH
294
B
HOH
21
2
HOH
HOH
295
B
HOH
263
2
HOH
HOH
296
B
HOH
371
2
HOH
HOH
297
B
HOH
31
2
HOH
HOH
298
B
HOH
71
2
HOH
HOH
299
B
HOH
117
2
HOH
HOH
300
B
HOH
68
2
HOH
HOH
301
B
HOH
150
2
HOH
HOH
302
B
HOH
171
2
HOH
HOH
303
B
HOH
84
2
HOH
HOH
304
B
HOH
368
2
HOH
HOH
305
B
HOH
278
2
HOH
HOH
306
B
HOH
349
2
HOH
HOH
307
B
HOH
262
2
HOH
HOH
308
B
HOH
88
2
HOH
HOH
309
B
HOH
65
2
HOH
HOH
310
B
HOH
7
2
HOH
HOH
311
B
HOH
40
2
HOH
HOH
312
B
HOH
83
2
HOH
HOH
313
B
HOH
256
2
HOH
HOH
314
B
HOH
126
2
HOH
HOH
315
B
HOH
210
2
HOH
HOH
316
B
HOH
365
2
HOH
HOH
317
B
HOH
124
2
HOH
HOH
318
B
HOH
123
2
HOH
HOH
319
B
HOH
200
2
HOH
HOH
320
B
HOH
22
2
HOH
HOH
321
B
HOH
335
2
HOH
HOH
322
B
HOH
97
2
HOH
HOH
323
B
HOH
112
2
HOH
HOH
324
B
HOH
338
2
HOH
HOH
325
B
HOH
337
2
HOH
HOH
326
B
HOH
41
2
HOH
HOH
327
B
HOH
340
2
HOH
HOH
328
B
HOH
16
2
HOH
HOH
329
B
HOH
264
2
HOH
HOH
330
B
HOH
185
2
HOH
HOH
331
B
HOH
10
2
HOH
HOH
332
B
HOH
190
2
HOH
HOH
333
B
HOH
360
2
HOH
HOH
334
B
HOH
221
2
HOH
HOH
335
B
HOH
205
2
HOH
HOH
336
B
HOH
216
2
HOH
HOH
337
B
HOH
153
2
HOH
HOH
338
B
HOH
13
2
HOH
HOH
339
B
HOH
154
2
HOH
HOH
340
B
HOH
332
2
HOH
HOH
341
B
HOH
366
2
HOH
HOH
342
B
HOH
275
2
HOH
HOH
343
B
HOH
115
2
HOH
HOH
344
B
HOH
94
2
HOH
HOH
345
B
HOH
420
2
HOH
HOH
346
B
HOH
268
2
HOH
HOH
347
B
HOH
317
2
HOH
HOH
348
B
HOH
302
2
HOH
HOH
349
B
HOH
243
2
HOH
HOH
350
B
HOH
419
2
HOH
HOH
351
B
HOH
5
2
HOH
HOH
352
B
HOH
463
2
HOH
HOH
353
B
HOH
342
2
HOH
HOH
354
B
HOH
98
2
HOH
HOH
355
B
HOH
290
2
HOH
HOH
356
B
HOH
234
2
HOH
HOH
357
B
HOH
311
2
HOH
HOH
358
B
HOH
343
2
HOH
HOH
359
B
HOH
291
2
HOH
HOH
360
B
HOH
376
2
HOH
HOH
361
B
HOH
172
2
HOH
HOH
362
B
HOH
356
2
HOH
HOH
363
B
HOH
118
2
HOH
HOH
364
B
HOH
211
2
HOH
HOH
365
B
HOH
450
2
HOH
HOH
366
B
HOH
301
2
HOH
HOH
367
B
HOH
432
2
HOH
HOH
368
B
HOH
392
2
HOH
HOH
369
B
HOH
225
2
HOH
HOH
370
B
HOH
452
2
HOH
HOH
371
B
HOH
298
2
HOH
HOH
372
B
HOH
388
2
HOH
HOH
373
B
HOH
391
2
HOH
HOH
374
B
HOH
440
2
HOH
HOH
375
B
HOH
389
2
HOH
HOH
376
B
HOH
390
2
HOH
HOH
377
B
HOH
364
2
HOH
HOH
378
B
HOH
439
2
HOH
HOH
379
B
HOH
266
2
HOH
HOH
380
B
HOH
191
2
HOH
HOH
381
B
HOH
308
2
HOH
HOH
382
B
HOH
215
2
HOH
HOH
383
B
HOH
456
2
HOH
HOH
384
B
HOH
188
2
HOH
HOH
385
B
HOH
122
2
HOH
HOH
386
B
HOH
255
2
HOH
HOH
387
B
HOH
148
2
HOH
HOH
388
B
HOH
113
2
HOH
HOH
389
B
HOH
378
2
HOH
HOH
390
B
HOH
257
2
HOH
HOH
391
B
HOH
395
2
HOH
HOH
392
B
HOH
457
2
HOH
HOH
393
B
HOH
132
2
HOH
HOH
394
B
HOH
159
2
HOH
HOH
395
B
HOH
3
2
HOH
HOH
396
B
HOH
235
2
HOH
HOH
397
B
HOH
295
2
HOH
HOH
398
B
HOH
258
2
HOH
HOH
399
B
HOH
219
2
HOH
HOH
400
B
HOH
305
2
HOH
HOH
401
B
HOH
230
2
HOH
HOH
402
B
HOH
313
2
HOH
HOH
403
B
HOH
380
2
HOH
HOH
404
B
HOH
254
2
HOH
HOH
405
B
HOH
314
2
HOH
HOH
406
B
HOH
465
2
HOH
HOH
407
B
HOH
272
2
HOH
HOH
408
B
HOH
446
2
HOH
HOH
409
B
HOH
163
2
HOH
HOH
410
B
HOH
51
2
HOH
HOH
411
B
HOH
250
2
HOH
HOH
412
B
HOH
161
2
HOH
HOH
413
B
HOH
421
2
HOH
HOH
414
B
HOH
397
2
HOH
HOH
415
B
HOH
169
2
HOH
HOH
416
B
HOH
462
2
HOH
HOH
417
B
HOH
108
2
HOH
HOH
418
B
HOH
405
2
HOH
HOH
419
B
HOH
403
2
HOH
HOH
420
B
HOH
393
2
HOH
HOH
421
B
HOH
253
2
HOH
HOH
422
B
HOH
226
2
HOH
HOH
423
B
HOH
147
2
HOH
HOH
424
B
HOH
323
2
HOH
HOH
425
B
HOH
304
2
HOH
HOH
426
B
HOH
306
2
HOH
HOH
427
B
HOH
315
2
HOH
HOH
428
B
HOH
213
2
HOH
HOH
429
B
HOH
373
2
HOH
HOH
430
B
HOH
229
2
HOH
HOH
431
B
HOH
430
2
HOH
HOH
432
B
n
1
3
A
ASN
4
n
2
ASN
4
A
ALA
5
n
3
ALA
5
A
ARG
6
n
4
ARG
6
A
ARG
7
n
5
ARG
7
A
ASP
8
n
6
ASP
8
A
LYS
9
n
7
LYS
9
A
LEU
10
n
8
LEU
10
A
LYS
11
n
9
LYS
11
A
ALA
12
n
10
ALA
12
A
GLN
13
n
11
GLN
13
A
ILE
14
n
12
ILE
14
A
ALA
15
n
13
ALA
15
A
ALA
16
n
14
ALA
16
A
SER
17
n
15
SER
17
A
GLY
18
n
16
GLY
18
A
LEU
19
n
17
LEU
19
A
ASP
20
n
18
ASP
20
A
ALA
21
n
19
ALA
21
A
MSE
22
n
20
MSE
22
A
LEU
23
n
21
LEU
23
A
ILE
24
n
22
ILE
24
A
SER
25
n
23
SER
25
A
ASP
26
n
24
ASP
26
A
LEU
27
n
25
LEU
27
A
ILE
28
n
26
ILE
28
A
ASN
29
n
27
ASN
29
A
VAL
30
n
28
VAL
30
A
ARG
31
n
29
ARG
31
A
TYR
32
n
30
TYR
32
A
LEU
33
n
31
LEU
33
A
SER
34
n
32
SER
34
A
GLY
35
n
33
GLY
35
A
PHE
36
n
34
PHE
36
A
SER
37
n
35
SER
37
A
GLY
38
n
36
GLY
38
A
SER
39
n
37
SER
39
A
ASN
40
n
38
ASN
40
A
GLY
41
n
39
GLY
41
A
ALA
42
n
40
ALA
42
A
LEU
43
n
41
LEU
43
A
LEU
44
n
42
LEU
44
A
VAL
45
n
43
VAL
45
A
PHE
46
n
44
PHE
46
A
ALA
47
n
45
ALA
47
A
ASP
48
n
46
ASP
48
A
GLU
49
n
47
GLU
49
A
ARG
50
n
48
ARG
50
A
ASP
51
n
49
ASP
51
A
ALA
52
n
50
ALA
52
A
VAL
53
n
51
VAL
53
A
LEU
54
n
52
LEU
54
A
ALA
55
n
53
ALA
55
A
THR
56
n
54
THR
56
A
ASP
57
n
55
ASP
57
A
GLY
58
n
56
GLY
58
A
ARG
59
n
57
ARG
59
A
TYR
60
n
58
TYR
60
A
ARG
61
n
59
ARG
61
A
THR
62
n
60
THR
62
A
GLN
63
n
61
GLN
63
A
ALA
64
n
62
ALA
64
A
ALA
65
n
63
ALA
65
A
SER
66
n
64
SER
66
A
GLN
67
n
65
GLN
67
A
ALA
68
n
66
ALA
68
A
PRO
69
n
67
PRO
69
A
ASP
70
n
68
ASP
70
A
LEU
71
n
69
LEU
71
A
GLU
72
n
70
GLU
72
A
VAL
73
n
71
VAL
73
A
ALA
74
n
72
ALA
74
A
ILE
75
n
73
ILE
75
A
GLU
76
n
74
GLU
76
A
ARG
77
n
75
ARG
77
A
ALA
78
n
76
ALA
78
A
VAL
79
n
77
VAL
79
A
GLY
80
n
78
GLY
80
A
ARG
81
n
79
ARG
81
A
TYR
82
n
80
TYR
82
A
LEU
83
n
81
LEU
83
A
ALA
84
n
82
ALA
84
A
GLY
85
n
83
GLY
85
A
ARG
86
n
84
ARG
86
A
ALA
87
n
85
ALA
87
A
GLY
88
n
86
GLY
88
A
GLU
89
n
87
GLU
89
A
ALA
90
n
88
ALA
90
A
GLY
91
n
89
GLY
91
A
VAL
92
n
90
VAL
92
A
GLY
93
n
91
GLY
93
A
LYS
94
n
92
LYS
94
A
LEU
95
n
93
LEU
95
A
GLY
96
n
94
GLY
96
A
PHE
97
n
95
PHE
97
A
GLU
98
n
96
GLU
98
A
SER
99
n
97
SER
99
A
HIS
100
n
98
HIS
100
A
VAL
101
n
99
VAL
101
A
VAL
102
n
100
VAL
102
A
THR
103
n
101
THR
103
A
VAL
104
n
102
VAL
104
A
ASP
105
n
103
ASP
105
A
GLY
106
n
104
GLY
106
A
LEU
107
n
105
LEU
107
A
ASP
108
n
106
ASP
108
A
ALA
109
n
107
ALA
109
A
LEU
110
n
108
LEU
110
A
ALA
111
n
109
ALA
111
A
GLY
112
n
110
GLY
112
A
ALA
113
n
111
ALA
113
A
LEU
114
n
112
LEU
114
A
GLU
115
n
113
GLU
115
A
GLY
116
n
114
GLY
116
A
LYS
117
n
115
LYS
117
A
ASN
118
n
116
ASN
118
A
THR
119
n
117
THR
119
A
GLU
120
n
118
GLU
120
A
LEU
121
n
119
LEU
121
A
VAL
122
n
120
VAL
122
A
ARG
123
n
121
ARG
123
A
ALA
124
n
122
ALA
124
A
SER
125
n
123
SER
125
A
GLY
126
n
124
GLY
126
A
THR
127
n
125
THR
127
A
VAL
128
n
126
VAL
128
A
GLU
129
n
127
GLU
129
A
SER
130
n
128
SER
130
A
LEU
131
n
129
LEU
131
A
ARG
132
n
130
ARG
132
A
GLU
133
n
131
GLU
133
A
n
132
134
A
ALA
3
n
1
SER
3
B
ASN
4
n
2
ASN
4
B
ALA
5
n
3
ALA
5
B
ARG
6
n
4
ARG
6
B
ARG
7
n
5
ARG
7
B
ASP
8
n
6
ASP
8
B
LYS
9
n
7
LYS
9
B
LEU
10
n
8
LEU
10
B
LYS
11
n
9
LYS
11
B
ALA
12
n
10
ALA
12
B
GLN
13
n
11
GLN
13
B
ILE
14
n
12
ILE
14
B
ALA
15
n
13
ALA
15
B
ALA
16
n
14
ALA
16
B
SER
17
n
15
SER
17
B
GLY
18
n
16
GLY
18
B
LEU
19
n
17
LEU
19
B
ASP
20
n
18
ASP
20
B
ALA
21
n
19
ALA
21
B
MSE
22
n
20
MSE
22
B
LEU
23
n
21
LEU
23
B
ILE
24
n
22
ILE
24
B
SER
25
n
23
SER
25
B
ASP
26
n
24
ASP
26
B
LEU
27
n
25
LEU
27
B
ILE
28
n
26
ILE
28
B
ASN
29
n
27
ASN
29
B
VAL
30
n
28
VAL
30
B
ARG
31
n
29
ARG
31
B
TYR
32
n
30
TYR
32
B
LEU
33
n
31
LEU
33
B
SER
34
n
32
SER
34
B
GLY
35
n
33
GLY
35
B
PHE
36
n
34
PHE
36
B
SER
37
n
35
SER
37
B
GLY
38
n
36
GLY
38
B
SER
39
n
37
SER
39
B
ASN
40
n
38
ASN
40
B
GLY
41
n
39
GLY
41
B
ALA
42
n
40
ALA
42
B
LEU
43
n
41
LEU
43
B
LEU
44
n
42
LEU
44
B
VAL
45
n
43
VAL
45
B
PHE
46
n
44
PHE
46
B
ALA
47
n
45
ALA
47
B
ASP
48
n
46
ASP
48
B
GLU
49
n
47
GLU
49
B
ARG
50
n
48
ARG
50
B
ASP
51
n
49
ASP
51
B
ALA
52
n
50
ALA
52
B
VAL
53
n
51
VAL
53
B
LEU
54
n
52
LEU
54
B
ALA
55
n
53
ALA
55
B
THR
56
n
54
THR
56
B
ASP
57
n
55
ASP
57
B
GLY
58
n
56
GLY
58
B
ARG
59
n
57
ARG
59
B
TYR
60
n
58
TYR
60
B
ARG
61
n
59
ARG
61
B
THR
62
n
60
THR
62
B
GLN
63
n
61
GLN
63
B
ALA
64
n
62
ALA
64
B
ALA
65
n
63
ALA
65
B
SER
66
n
64
SER
66
B
GLN
67
n
65
GLN
67
B
ALA
68
n
66
ALA
68
B
PRO
69
n
67
PRO
69
B
ASP
70
n
68
ASP
70
B
LEU
71
n
69
LEU
71
B
GLU
72
n
70
GLU
72
B
VAL
73
n
71
VAL
73
B
ALA
74
n
72
ALA
74
B
ILE
75
n
73
ILE
75
B
GLU
76
n
74
GLU
76
B
ARG
77
n
75
ARG
77
B
ALA
78
n
76
ALA
78
B
VAL
79
n
77
VAL
79
B
GLY
80
n
78
GLY
80
B
ARG
81
n
79
ARG
81
B
TYR
82
n
80
TYR
82
B
LEU
83
n
81
LEU
83
B
ALA
84
n
82
ALA
84
B
GLY
85
n
83
GLY
85
B
ARG
86
n
84
ARG
86
B
ALA
87
n
85
ALA
87
B
GLY
88
n
86
GLY
88
B
GLU
89
n
87
GLU
89
B
ALA
90
n
88
ALA
90
B
GLY
91
n
89
GLY
91
B
VAL
92
n
90
VAL
92
B
GLY
93
n
91
GLY
93
B
LYS
94
n
92
LYS
94
B
LEU
95
n
93
LEU
95
B
GLY
96
n
94
GLY
96
B
PHE
97
n
95
PHE
97
B
GLU
98
n
96
GLU
98
B
SER
99
n
97
SER
99
B
HIS
100
n
98
HIS
100
B
VAL
101
n
99
VAL
101
B
VAL
102
n
100
VAL
102
B
THR
103
n
101
THR
103
B
VAL
104
n
102
VAL
104
B
ASP
105
n
103
ASP
105
B
GLY
106
n
104
GLY
106
B
LEU
107
n
105
LEU
107
B
ASP
108
n
106
ASP
108
B
ALA
109
n
107
ALA
109
B
LEU
110
n
108
LEU
110
B
ALA
111
n
109
ALA
111
B
GLY
112
n
110
GLY
112
B
ALA
113
n
111
ALA
113
B
LEU
114
n
112
LEU
114
B
GLU
115
n
113
GLU
115
B
GLY
116
n
114
GLY
116
B
LYS
117
n
115
LYS
117
B
ASN
118
n
116
ASN
118
B
THR
119
n
117
THR
119
B
GLU
120
n
118
GLU
120
B
LEU
121
n
119
LEU
121
B
VAL
122
n
120
VAL
122
B
ARG
123
n
121
ARG
123
B
ALA
124
n
122
ALA
124
B
SER
125
n
123
SER
125
B
GLY
126
n
124
GLY
126
B
THR
127
n
125
THR
127
B
VAL
128
n
126
VAL
128
B
GLU
129
n
127
GLU
129
B
SER
130
n
128
SER
130
B
LEU
131
n
129
LEU
131
B
ARG
132
n
130
ARG
132
B
n
131
133
B
n
132
134
B
software_defined_assembly
PISA
2
dimeric
860
-2
12360
A
MSE
22
modified residue
A
MSE
20
MET
B
MSE
22
modified residue
B
MSE
20
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
72
A
O
GLU
70
A
N
LEU
54
A
N
LEU
52
A
O
VAL
53
A
O
VAL
51
A
N
LEU
44
A
N
LEU
42
A
O
LEU
43
A
O
LEU
41
A
N
ILE
24
A
N
ILE
22
A
N
LEU
23
A
N
LEU
21
A
O
GLY
96
A
O
GLY
94
A
N
LEU
95
A
N
LEU
93
A
O
GLU
120
A
O
GLU
118
B
O
ALA
74
B
O
ALA
72
B
N
LEU
54
B
N
LEU
52
B
O
ALA
55
B
O
ALA
53
B
N
ALA
42
B
N
ALA
40
B
O
LEU
43
B
O
LEU
41
B
N
ILE
24
B
N
ILE
22
B
N
ALA
21
B
N
ALA
19
B
O
GLY
96
B
O
GLY
94
B
N
LEU
95
B
N
LEU
93
B
O
GLU
120
B
O
GLU
118
1
B
OG
SER
3
B
OG
SER
1
1
Y
1
A
SER
3
A
SER
1
1
Y
1
A
VAL
134
A
VAL
132
1
Y
1
B
GLU
133
B
GLU
131
1
Y
1
B
VAL
134
B
VAL
132
1
Y
1
B
B
O
O
HOH
HOH
278
326
2.11
1
B
B
NH1
O
ARG
HOH
77
201
2.18
B
1
-3.45
0.50
120.30
116.85
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
86
86
86
N
1
A
ALA
124
-142.23
25.79
1
B
ASN
118
B
-99.22
46.01
73.000
17.1230
5.260
0.2400
-0.0000
0.0000
0.1000
0.0000
-0.3500
0.9690
0.9490
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.1863
0.1380
0.1404
1.7000
30.1200
1654
31058
5.1000
97.2300
3.6330
0.0550
RANDOM
1
THROUGHOUT
0.000
SAD
0.1220
0.0910
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD WITH PHASES
MASK
1.7000
30.1200
432
2336
32.14
0
0
1904
260
0.008
0.019
1989
0.001
0.020
1955
1.236
1.975
2691
0.712
3.000
4457
4.789
5.000
272
31.315
22.889
90
11.242
15.000
328
15.845
15.000
25
0.075
0.200
311
0.005
0.020
2367
0.002
0.020
462
2.658
3.000
3944
27.774
5.000
125
7.238
5.000
4230
0.2490
0.1640
1.7470
82
1772
1854
20
75.8900
1.700
50.000
5E2C
33012
0.060
0.025
0.066
0.830
1
27.058
11.800
212022
6.400
98.500
0.389
1.700
1.730
1431
0.870
0.233
0.456
0.650
1
3.400
0
86.700
0.310
1.730
1.760
1507
0.913
0.177
0.359
0.638
1
3.700
0
91.100
0.299
1.760
1.790
1578
0.908
0.162
0.342
0.670
1
4.000
0
96.300
0.268
1.790
1.830
1602
0.937
0.136
0.302
0.696
1
4.600
0
97.900
0.230
1.830
1.870
1641
0.972
0.107
0.254
0.726
1
5.400
0
99.900
0.204
1.870
1.910
1671
0.972
0.089
0.223
0.929
1
6.300
0
100.000
0.174
1.910
1.960
1637
0.982
0.071
0.188
0.814
1
7.000
0
100.000
0.131
1.960
2.020
1664
0.990
0.052
0.141
0.749
1
7.300
0
100.000
0.112
2.020
2.070
1669
0.992
0.044
0.121
0.759
1
7.300
0
100.000
0.093
2.070
2.140
1654
0.992
0.037
0.101
0.741
1
7.300
0
100.000
0.091
2.140
2.220
1672
0.994
0.036
0.098
0.815
1
7.300
0
100.000
0.085
2.220
2.310
1652
0.993
0.034
0.091
0.996
1
7.300
0
100.000
0.062
2.310
2.410
1651
0.996
0.025
0.067
0.735
1
7.300
0
100.000
0.058
2.410
2.540
1680
0.996
0.023
0.062
0.739
1
7.300
0
100.000
0.051
2.540
2.700
1679
0.996
0.020
0.055
0.713
1
7.300
0
100.000
0.047
2.700
2.910
1684
0.997
0.019
0.050
0.709
1
7.200
0
100.000
0.045
2.910
3.200
1699
0.996
0.018
0.048
0.780
1
7.200
0
100.000
0.050
3.200
3.660
1697
0.996
0.020
0.054
1.147
1
7.000
0
100.000
0.050
3.660
4.610
1733
0.995
0.021
0.054
1.229
1
6.900
0
99.900
0.045
4.610
50.000
1811
0.992
0.019
0.049
1.001
1
6.400
0
98.400
data scaling
SCALEPACK
refinement
REFMAC
5.7.0029
data extraction
PDB_EXTRACT
3.15
data reduction
HKL-3000
phasing
HKL-3000
data collection
SBC-Collect
Xaa-Pro dipeptidase
Crystal structure of N-terminal domain of cytoplasmic peptidase PepQ from Mycobacterium tuberculosis H37Rv
1
N
N
1
N
N
2
N
N
2
N
N
A
ASN
4
A
ASN
2
HELX_P
A
SER
17
A
SER
15
1
AA1
14
A
ASP
26
A
ASP
24
HELX_P
A
GLY
35
A
GLY
33
1
AA2
10
A
ASP
57
A
ASP
55
HELX_P
A
ARG
59
A
ARG
57
5
AA3
3
A
TYR
60
A
TYR
58
HELX_P
A
ALA
68
A
ALA
66
1
AA4
9
A
ALA
78
A
ALA
76
HELX_P
A
ALA
90
A
ALA
88
1
AA5
13
A
THR
103
A
THR
101
HELX_P
A
LEU
114
A
LEU
112
1
AA6
12
A
VAL
128
A
VAL
126
HELX_P
A
ARG
132
A
ARG
130
5
AA7
5
B
ASN
4
B
ASN
2
HELX_P
B
SER
17
B
SER
15
1
AA8
14
B
ASP
26
B
ASP
24
HELX_P
B
GLY
35
B
GLY
33
1
AA9
10
B
ASP
57
B
ASP
55
HELX_P
B
ARG
59
B
ARG
57
5
AB1
3
B
TYR
60
B
TYR
58
HELX_P
B
ALA
68
B
ALA
66
1
AB2
9
B
ALA
78
B
ALA
76
HELX_P
B
ALA
90
B
ALA
88
1
AB3
13
B
THR
103
B
THR
101
HELX_P
B
LEU
114
B
LEU
112
1
AB4
12
B
THR
127
B
THR
125
HELX_P
B
ARG
132
B
ARG
130
5
AB5
6
covale
1.326
both
A
ALA
21
A
C
ALA
19
1_555
A
MSE
22
A
N
MSE
20
1_555
covale
1.321
both
A
MSE
22
A
C
MSE
20
1_555
A
LEU
23
A
N
LEU
21
1_555
covale
1.324
both
B
ALA
21
B
C
ALA
19
1_555
B
MSE
22
B
N
MSE
20
1_555
covale
1.319
both
B
MSE
22
B
C
MSE
20
1_555
B
LEU
23
B
N
LEU
21
1_555
HYDROLASE
Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors, MTBI, HYDROLASE
A5U5N4_MYCTA
UNP
1
6
A5U5N4
RRDKLKAQIAASGLDAMLISDLINVRYLSGFSGSNGALLVFADERDAVLATDGRYRTQAASQAPDLEVAIERAVGRYLAG
RAGEAGVGKLGFESHVVTVDGLDALAGALEGKNTELVRASGTVESLREV
6
134
5E2C
6
134
A5U5N4
A
1
4
132
6
134
5E2C
6
134
A5U5N4
B
1
4
132
1
expression tag
SER
3
5E2C
A
A5U5N4
UNP
1
1
expression tag
ASN
4
5E2C
A
A5U5N4
UNP
2
1
expression tag
ALA
5
5E2C
A
A5U5N4
UNP
3
2
expression tag
SER
3
5E2C
B
A5U5N4
UNP
1
2
expression tag
ASN
4
5E2C
B
A5U5N4
UNP
2
2
expression tag
ALA
5
5E2C
B
A5U5N4
UNP
3
6
6
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
A
GLU
72
A
GLU
70
A
ILE
75
A
ILE
73
A
VAL
53
A
VAL
51
A
THR
56
A
THR
54
A
ALA
42
A
ALA
40
A
PHE
46
A
PHE
44
A
ALA
21
A
ALA
19
A
ILE
24
A
ILE
22
A
LYS
94
A
LYS
92
A
PHE
97
A
PHE
95
A
GLU
120
A
GLU
118
A
ARG
123
A
ARG
121
B
GLU
72
B
GLU
70
B
ILE
75
B
ILE
73
B
VAL
53
B
VAL
51
B
THR
56
B
THR
54
B
ALA
42
B
ALA
40
B
PHE
46
B
PHE
44
B
ALA
21
B
ALA
19
B
ILE
24
B
ILE
22
B
LYS
94
B
LYS
92
B
PHE
97
B
PHE
95
B
GLU
120
B
GLU
118
B
ARG
123
B
ARG
121
19
P 21 21 21