0.030989 0.000000 0.000000 0.000000 0.030989 0.000000 0.000000 0.000000 0.004748 0.000000 0.000000 0.000000 Padyana, A.K. Vaidialingam, B. Hayes, D.B. Gupta, P. Franti, M. Farrow, N.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 32.270 32.270 210.602 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Acta Crystallogr.,Sect.F ACSFEN 2053-230X 72 160 164 10.1107/S2053230X16001588 26919518 Crystal structure of human GDF11. 2016 100 1 PIXEL 2015-02-06 DECTRIS PILATUS 6M double crystal Si(111) SINGLE WAVELENGTH M x-ray 1 1.00 1.0 X10SA SLS 1.00 SYNCHROTRON SLS BEAMLINE X10SA 12471.309 Growth/differentiation factor 11 UNP residues 299-407 1 man polymer 194.226 TETRAETHYLENE GLYCOL 2 syn non-polymer 18.015 water 142 nat water GDF-11, Bone morphogenetic protein 11, BMP-11 no no NLGLDCDEHSSESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGQCEYMFMQKYPHTHLVQQANPRGSAGPCCTPTKMS PINMLYFNDKQQIIYGKIPGMVVDRCGCS NLGLDCDEHSSESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGQCEYMFMQKYPHTHLVQQANPRGSAGPCCTPTKMS PINMLYFNDKQQIIYGKIPGMVVDRCGCS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 109 GDF11, BMP11 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.22 44.61 VAPOR DIFFUSION, SITTING DROP 7.5 0.18 M magnesium acetate, 0.1 M HEPES, pH 7.5, 22.5% PEG3350, 0.01 M strontium chloride 293 repository Initial release 1 0 2016-03-09 N RCSB Y RCSB 2015-10-06 REL REL PG4 TETRAETHYLENE GLYCOL HOH water PG4 990 2 PG4 PG4 201 A PG4 991 2 PG4 PG4 202 A HOH 142 3 HOH HOH 301 A HOH 117 3 HOH HOH 302 A HOH 70 3 HOH HOH 303 A HOH 78 3 HOH HOH 304 A HOH 63 3 HOH HOH 305 A HOH 85 3 HOH HOH 306 A HOH 29 3 HOH HOH 307 A HOH 9 3 HOH HOH 308 A HOH 68 3 HOH HOH 309 A HOH 5 3 HOH HOH 310 A HOH 54 3 HOH HOH 311 A HOH 52 3 HOH HOH 312 A HOH 75 3 HOH HOH 313 A HOH 25 3 HOH HOH 314 A HOH 2 3 HOH HOH 315 A HOH 59 3 HOH HOH 316 A HOH 108 3 HOH HOH 317 A HOH 96 3 HOH HOH 318 A HOH 121 3 HOH HOH 319 A HOH 133 3 HOH HOH 320 A HOH 123 3 HOH HOH 321 A HOH 90 3 HOH HOH 322 A HOH 89 3 HOH HOH 323 A HOH 3 3 HOH HOH 324 A HOH 95 3 HOH HOH 325 A HOH 21 3 HOH HOH 326 A HOH 76 3 HOH HOH 327 A HOH 49 3 HOH HOH 328 A HOH 74 3 HOH HOH 329 A HOH 82 3 HOH HOH 330 A HOH 14 3 HOH HOH 331 A HOH 50 3 HOH HOH 332 A HOH 79 3 HOH HOH 333 A HOH 112 3 HOH HOH 334 A HOH 16 3 HOH HOH 335 A HOH 27 3 HOH HOH 336 A HOH 15 3 HOH HOH 337 A HOH 10 3 HOH HOH 338 A HOH 137 3 HOH HOH 339 A HOH 35 3 HOH HOH 340 A HOH 103 3 HOH HOH 341 A HOH 51 3 HOH HOH 342 A HOH 19 3 HOH HOH 343 A HOH 58 3 HOH HOH 344 A HOH 128 3 HOH HOH 345 A HOH 11 3 HOH HOH 346 A HOH 48 3 HOH HOH 347 A HOH 6 3 HOH HOH 348 A HOH 13 3 HOH HOH 349 A HOH 77 3 HOH HOH 350 A HOH 47 3 HOH HOH 351 A HOH 28 3 HOH HOH 352 A HOH 94 3 HOH HOH 353 A HOH 64 3 HOH HOH 354 A HOH 26 3 HOH HOH 355 A HOH 4 3 HOH HOH 356 A HOH 42 3 HOH HOH 357 A HOH 24 3 HOH HOH 358 A HOH 32 3 HOH HOH 359 A HOH 66 3 HOH HOH 360 A HOH 91 3 HOH HOH 361 A HOH 83 3 HOH HOH 362 A HOH 1 3 HOH HOH 363 A HOH 17 3 HOH HOH 364 A HOH 22 3 HOH HOH 365 A HOH 72 3 HOH HOH 366 A HOH 31 3 HOH HOH 367 A HOH 12 3 HOH HOH 368 A HOH 8 3 HOH HOH 369 A HOH 37 3 HOH HOH 370 A HOH 93 3 HOH HOH 371 A HOH 84 3 HOH HOH 372 A HOH 57 3 HOH HOH 373 A HOH 67 3 HOH HOH 374 A HOH 38 3 HOH HOH 375 A HOH 56 3 HOH HOH 376 A HOH 65 3 HOH HOH 377 A HOH 92 3 HOH HOH 378 A HOH 46 3 HOH HOH 379 A HOH 44 3 HOH HOH 380 A HOH 88 3 HOH HOH 381 A HOH 97 3 HOH HOH 382 A HOH 100 3 HOH HOH 383 A HOH 61 3 HOH HOH 384 A HOH 7 3 HOH HOH 385 A HOH 45 3 HOH HOH 386 A HOH 23 3 HOH HOH 387 A HOH 62 3 HOH HOH 388 A HOH 20 3 HOH HOH 389 A HOH 127 3 HOH HOH 390 A HOH 30 3 HOH HOH 391 A HOH 130 3 HOH HOH 392 A HOH 87 3 HOH HOH 393 A HOH 33 3 HOH HOH 394 A HOH 139 3 HOH HOH 395 A HOH 105 3 HOH HOH 396 A HOH 39 3 HOH HOH 397 A HOH 126 3 HOH HOH 398 A HOH 110 3 HOH HOH 399 A HOH 118 3 HOH HOH 400 A HOH 114 3 HOH HOH 401 A HOH 73 3 HOH HOH 402 A HOH 120 3 HOH HOH 403 A HOH 41 3 HOH HOH 404 A HOH 98 3 HOH HOH 405 A HOH 18 3 HOH HOH 406 A HOH 81 3 HOH HOH 407 A HOH 53 3 HOH HOH 408 A HOH 136 3 HOH HOH 409 A HOH 119 3 HOH HOH 410 A HOH 138 3 HOH HOH 411 A HOH 34 3 HOH HOH 412 A HOH 109 3 HOH HOH 413 A HOH 124 3 HOH HOH 414 A HOH 80 3 HOH HOH 415 A HOH 129 3 HOH HOH 416 A HOH 132 3 HOH HOH 417 A HOH 101 3 HOH HOH 418 A HOH 134 3 HOH HOH 419 A HOH 43 3 HOH HOH 420 A HOH 111 3 HOH HOH 421 A HOH 55 3 HOH HOH 422 A HOH 60 3 HOH HOH 423 A HOH 122 3 HOH HOH 424 A HOH 140 3 HOH HOH 425 A HOH 113 3 HOH HOH 426 A HOH 141 3 HOH HOH 427 A HOH 135 3 HOH HOH 428 A HOH 36 3 HOH HOH 429 A HOH 107 3 HOH HOH 430 A HOH 71 3 HOH HOH 431 A HOH 40 3 HOH HOH 432 A HOH 116 3 HOH HOH 433 A HOH 131 3 HOH HOH 434 A HOH 69 3 HOH HOH 435 A HOH 99 3 HOH HOH 436 A HOH 125 3 HOH HOH 437 A HOH 115 3 HOH HOH 438 A HOH 86 3 HOH HOH 439 A HOH 102 3 HOH HOH 440 A HOH 104 3 HOH HOH 441 A HOH 106 3 HOH HOH 442 A n 1 1 A LEU 2 n 2 LEU 2 A GLY 3 n 3 GLY 3 A LEU 4 n 4 LEU 4 A ASP 5 n 5 ASP 5 A CYS 6 n 6 CYS 6 A ASP 7 n 7 ASP 7 A GLU 8 n 8 GLU 8 A HIS 9 n 9 HIS 9 A SER 10 n 10 SER 10 A SER 11 n 11 SER 11 A GLU 12 n 12 GLU 12 A SER 13 n 13 SER 13 A ARG 14 n 14 ARG 14 A CYS 15 n 15 CYS 15 A CYS 16 n 16 CYS 16 A ARG 17 n 17 ARG 17 A TYR 18 n 18 TYR 18 A PRO 19 n 19 PRO 19 A LEU 20 n 20 LEU 20 A THR 21 n 21 THR 21 A VAL 22 n 22 VAL 22 A ASP 23 n 23 ASP 23 A PHE 24 n 24 PHE 24 A GLU 25 n 25 GLU 25 A ALA 26 n 26 ALA 26 A PHE 27 n 27 PHE 27 A GLY 28 n 28 GLY 28 A TRP 29 n 29 TRP 29 A ASP 30 n 30 ASP 30 A TRP 31 n 31 TRP 31 A ILE 32 n 32 ILE 32 A ILE 33 n 33 ILE 33 A ALA 34 n 34 ALA 34 A PRO 35 n 35 PRO 35 A LYS 36 n 36 LYS 36 A ARG 37 n 37 ARG 37 A TYR 38 n 38 TYR 38 A LYS 39 n 39 LYS 39 A ALA 40 n 40 ALA 40 A ASN 41 n 41 ASN 41 A TYR 42 n 42 TYR 42 A CYS 43 n 43 CYS 43 A SER 44 n 44 SER 44 A GLY 45 n 45 GLY 45 A GLN 46 n 46 GLN 46 A CYS 47 n 47 CYS 47 A GLU 48 n 48 GLU 48 A TYR 49 n 49 TYR 49 A MET 50 n 50 MET 50 A PHE 51 n 51 PHE 51 A MET 52 n 52 MET 52 A GLN 53 n 53 GLN 53 A LYS 54 n 54 LYS 54 A TYR 55 n 55 TYR 55 A PRO 56 n 56 PRO 56 A HIS 57 n 57 HIS 57 A THR 58 n 58 THR 58 A HIS 59 n 59 HIS 59 A LEU 60 n 60 LEU 60 A VAL 61 n 61 VAL 61 A GLN 62 n 62 GLN 62 A GLN 63 n 63 GLN 63 A ALA 64 n 64 ALA 64 A ASN 65 n 65 ASN 65 A PRO 66 n 66 PRO 66 A ARG 67 n 67 ARG 67 A GLY 68 n 68 GLY 68 A SER 69 n 69 SER 69 A ALA 70 n 70 ALA 70 A GLY 71 n 71 GLY 71 A PRO 72 n 72 PRO 72 A CYS 73 n 73 CYS 73 A CYS 74 n 74 CYS 74 A THR 75 n 75 THR 75 A PRO 76 n 76 PRO 76 A THR 77 n 77 THR 77 A LYS 78 n 78 LYS 78 A MET 79 n 79 MET 79 A SER 80 n 80 SER 80 A PRO 81 n 81 PRO 81 A ILE 82 n 82 ILE 82 A ASN 83 n 83 ASN 83 A MET 84 n 84 MET 84 A LEU 85 n 85 LEU 85 A TYR 86 n 86 TYR 86 A PHE 87 n 87 PHE 87 A ASN 88 n 88 ASN 88 A ASP 89 n 89 ASP 89 A LYS 90 n 90 LYS 90 A GLN 91 n 91 GLN 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A ILE 94 n 94 ILE 94 A TYR 95 n 95 TYR 95 A GLY 96 n 96 GLY 96 A LYS 97 n 97 LYS 97 A ILE 98 n 98 ILE 98 A PRO 99 n 99 PRO 99 A GLY 100 n 100 GLY 100 A MET 101 n 101 MET 101 A VAL 102 n 102 VAL 102 A VAL 103 n 103 VAL 103 A ASP 104 n 104 ASP 104 A ARG 105 n 105 ARG 105 A CYS 106 n 106 CYS 106 A GLY 107 n 107 GLY 107 A CYS 108 n 108 CYS 108 A SER 109 n 109 SER 109 A 8.6683 0.3998 -1.1651 4.0924 2.4977 4.3231 -0.0871 -0.0722 0.2818 0.0964 0.0257 0.1562 -0.0531 -0.1571 0.0740 0.1597 -0.0088 -0.0088 0.2267 -0.0083 0.2010 refined -12.5462 10.3126 0.1914 X-RAY DIFFRACTION 0.9798 0.1082 1.1947 0.8058 0.0546 2.3442 -0.0653 -0.0830 -0.0432 0.0851 0.0268 0.0342 -0.0754 -0.2483 0.0566 0.1721 0.0090 0.0088 0.1846 -0.0086 0.1711 refined -2.8216 10.3041 17.2877 X-RAY DIFFRACTION 4.2064 -2.2203 -2.1194 1.8083 -0.7625 7.0763 0.1496 0.5172 0.2497 -0.1666 -0.0955 0.2121 0.3081 -0.6204 -0.0211 0.1940 -0.0166 0.0019 0.2418 -0.0245 0.2041 refined -2.5747 5.4170 -8.9335 X-RAY DIFFRACTION 1.7741 -1.0187 -1.0599 0.8982 1.7247 5.1103 -0.0413 0.1065 -0.2618 0.1514 -0.0525 0.2177 0.4909 -0.2691 0.0609 0.1995 -0.0247 0.0011 0.1926 0.0017 0.2186 refined 1.6731 -0.0841 -8.5855 X-RAY DIFFRACTION 1.3122 0.7450 2.5274 0.8953 1.7525 6.3240 0.0150 0.0981 -0.0326 0.1068 0.0863 -0.1006 -0.0240 0.2953 -0.0882 0.1861 -0.0093 -0.0041 0.1783 -0.0154 0.1919 refined 8.3951 12.9746 17.0806 X-RAY DIFFRACTION A 0 A 0 X-RAY DIFFRACTION 1 chain 'A' and (resid 2 through 15 ) A 0 A 0 X-RAY DIFFRACTION 2 chain 'A' and (resid 16 through 44 ) A 0 A 0 X-RAY DIFFRACTION 3 chain 'A' and (resid 45 through 55 ) A 0 A 0 X-RAY DIFFRACTION 4 chain 'A' and (resid 56 through 78 ) A 0 A 0 X-RAY DIFFRACTION 5 chain 'A' and (resid 79 through 109 ) author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 18 A N TYR 18 A O TYR 42 A O TYR 42 A N VAL 22 A N VAL 22 A O TYR 38 A O TYR 38 A N ALA 34 A N ALA 34 A O LEU 85 A O LEU 85 A N ILE 82 A N ILE 82 A O ILE 98 A O ILE 98 1 A HOH 309 D HOH 1 A HOH 389 D HOH 1 A ASN 1 A ASN 1 1 Y 1 A ASN 41 71.05 170.68 1 A MET 50 69.96 -4.00 94.260 28.5419 14.570 0.2071 0.1880 0.1890 1.5000 22.8180 880 16683 17563 5.0100 92.0500 0.1700 RANDOM 1 FREE R-VALUE 1.330 MOLECULAR REPLACEMENT 23.7200 0.9000 1.1100 homology model ML FLAT BULK SOLVENT MODEL 1.5000 22.8180 142 1027 46.73 38.56 26 0 859 108 0.006 961 1.058 1293 0.074 126 0.006 171 13.487 367 0.2968 0.2779 1.5937 141 2678 2819 6 91.0000 0.2678 0.2465 1.7167 144 2738 2882 6 93.0000 0.2400 0.2420 1.8894 144 2725 2869 6 92.0000 0.2414 0.2014 2.1627 150 2845 2995 6 95.0000 0.2267 0.1959 2.7240 151 2864 3015 6 94.0000 0.1670 0.1554 22.8208 150 2833 2983 6 87.0000 20.500 1.500 22.820 5E4G 17599 0.056 1.140 1 9.400 56267 3.110 1548 92.300 0.560 1.500 1.550 1.900 5275 1701 1.390 1 3.010 157 91.800 0.486 1.550 1.620 2.400 5755 1722 1.400 1 3.240 174 92.100 0.381 1.620 1.690 2.900 5718 1735 1.280 1 3.190 192 93.700 0.317 1.690 1.780 3.500 5450 1722 1.320 1 3.090 126 93.300 0.215 1.780 1.890 5.100 5407 1720 1.250 1 3.030 196 91.200 0.150 1.890 2.040 6.900 5804 1778 1.100 1 3.160 182 95.200 0.106 2.040 2.240 9.500 5682 1801 0.990 1 3.090 125 95.500 0.082 2.240 2.560 11.600 5721 1818 0.920 1 3.080 115 93.900 0.056 2.560 3.230 17.300 5779 1839 0.850 1 3.100 87 93.400 0.034 3.230 22.820 31.700 5676 1763 0.900 1 3.110 194 83.400 refinement PHENIX data extraction PDB_EXTRACT 3.15 data reduction d*TREK data scaling d*TREK phasing PHASER Growth/differentiation factor 11 Crystal structure of human growth differentiation factor 11 (GDF-11) 1 N N 2 N N 2 N N 3 N N A PRO 56 A PRO 56 HELX_P A ASN 65 A ASN 65 1 AA1 10 disulf 2.045 B A CYS 6 A SG CYS 6 1_555 A CYS 16 A SG CYS 16 1_555 disulf 2.022 A A CYS 6 A SG CYS 6 1_555 A CYS 16 A SG CYS 16 1_555 disulf 2.049 A CYS 15 A SG CYS 15 1_555 A CYS 74 A SG CYS 74 1_555 disulf 2.004 A CYS 43 A SG CYS 43 1_555 A CYS 106 A SG CYS 106 1_555 disulf 2.045 A CYS 47 A SG CYS 47 1_555 A CYS 108 A SG CYS 108 1_555 disulf 2.156 B B A CYS 73 A SG CYS 73 1_555 A CYS 73 A SG CYS 73 7_555 HORMONE Bone morphogenetic protein 11, BMP-11, GDF 11, HORMONE, growth factor A ALA 34 A ALA 34 1 A PRO 35 A PRO 35 -4.63 GDF11_HUMAN UNP 1 299 O95390 NLGLDCDEHSSESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGQCEYMFMQKYPHTHLVQQANPRGSAGPCCTPTKMS PINMLYFNDKQQIIYGKIPGMVVDRCGCS 299 407 5E4G 1 109 O95390 A 1 1 109 2 2 3 anti-parallel anti-parallel anti-parallel anti-parallel A CYS 16 A CYS 16 A TYR 18 A TYR 18 A TYR 42 A TYR 42 A SER 44 A SER 44 A THR 21 A THR 21 A ASP 23 A ASP 23 A ARG 37 A ARG 37 A LYS 39 A LYS 39 A ILE 32 A ILE 32 A ALA 34 A ALA 34 A CYS 73 A CYS 73 A PHE 87 A PHE 87 A ILE 93 A ILE 93 A SER 109 A SER 109 binding site for residue PG4 A 201 A PG4 201 Software 4 binding site for residue PG4 A 202 A PG4 202 Software 4 A HIS 59 A HIS 59 4 3_555 A TYR 86 A TYR 86 4 5_555 A ILE 93 A ILE 93 4 1_555 A HOH 345 D HOH 4 1_555 A ASN 83 A ASN 83 4 1_555 A PHE 87 A PHE 87 4 5_555 A ASN 88 A ASN 88 4 5_555 A TYR 95 A TYR 95 4 1_555 92 P 41 21 2