0.011922
0.000000
0.000000
0.000000
0.010590
0.000000
0.000000
0.000000
0.019343
0.00000
0.00000
0.00000
Hai, Y.
Christianson, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
83.881
94.429
51.698
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H4 N 1
18.038
AMMONIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C17 H22 N2 O3
302.368
TRICHOSTATIN A
7-[4-(DIMETHYLAMINO)PHENYL]-N-HYDROXY-4,6-DIMETHYL-7-OXO-2,4-HEPTADIENAMIDE
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
C
N
90
N
O
N
91
N
C
N
92
N
O
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
Y
167
N
C
Y
168
N
N
Y
169
N
C
Y
170
N
C
Y
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
S
C
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
I
N
209
N
K
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
N
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
S
N
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
O
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
R
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
N
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
O
N
381
N
O
N
382
N
O
N
383
N
N
N
384
N
N
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
C
N
392
R
C
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
Y
162
N
sing
Y
163
N
doub
Y
164
N
doub
N
165
N
sing
Y
166
N
sing
N
167
N
sing
Y
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
Y
274
N
doub
Y
275
N
sing
Y
276
N
sing
N
277
N
sing
Y
278
N
doub
N
279
N
sing
Y
280
N
doub
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
N
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
E
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
E
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
Y
415
N
doub
Y
416
N
sing
Y
417
N
sing
N
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
doub
N
422
N
sing
Y
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
US
Nat.Chem.Biol.
1552-4469
12
741
747
10.1038/nchembio.2134
27454933
Histone deacetylase 6 structure and molecular basis of catalysis and inhibition.
2016
10.2210/pdb5eek/pdb
pdb_00005eek
100
1
CCD
2015-07-23
MARMOSAIC 325 mm CCD
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.28184
1.0
BL14-1
SSRL
1.28184
SYNCHROTRON
SSRL BEAMLINE BL14-1
40285.484
Hdac6 protein
3.5.1.98
catalytic domain 2 (UNP residues 288-646)
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
39.098
POTASSIUM ION
2
syn
non-polymer
302.368
TRICHOSTATIN A
1
syn
non-polymer
126.904
IODIDE ION
26
syn
non-polymer
18.038
AMMONIUM ION
6
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
18.015
water
376
nat
water
histone deacetylase 6
no
no
SNAGGSSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSS
EHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTAR
YAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMG
DPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESM
SMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR
SNAGGSSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSS
EHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTAR
YAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMG
DPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESM
SMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Zebrafish
sample
1
364
hdac6
7955
Danio rerio
562
Escherichia coli
Biological sequence
2.54
51.60
VAPOR DIFFUSION, SITTING DROP
7.5
0.1 M ammonium iodide, 20% PEG3350
294
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2016-07-27
1
1
2016-08-10
1
2
2016-09-07
1
3
2023-09-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_pdbx_struct_oper_list.symmetry_operation
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
N
RCSB
Y
RCSB
2015-10-23
REL
REL
ZN
ZINC ION
K
POTASSIUM ION
TSN
TRICHOSTATIN A
IOD
IODIDE ION
NH4
AMMONIUM ION
CL
CHLORIDE ION
GOL
GLYCEROL
EDO
1,2-ETHANEDIOL
HOH
water
5EEI
PDB entry 5EEI
PDB
experimental model
ZN
2001
2
ZN
ZN
2001
A
K
2002
3
K
K
2002
A
K
2003
3
K
K
2003
A
TSN
2501
4
TSN
TSN
2004
A
I
1
5
IOD
IOD
2005
A
I
8
5
IOD
IOD
2006
A
I
9
5
IOD
IOD
2007
A
I
10
5
IOD
IOD
2008
A
I
11
5
IOD
IOD
2009
A
I
12
5
IOD
IOD
2010
A
I
13
5
IOD
IOD
2011
A
I
14
5
IOD
IOD
2012
A
I
15
5
IOD
IOD
2013
A
I
16
5
IOD
IOD
2014
A
I
17
5
IOD
IOD
2015
A
I
18
5
IOD
IOD
2016
A
I
19
5
IOD
IOD
2017
A
I
20
5
IOD
IOD
2018
A
I
21
5
IOD
IOD
2019
A
I
22
5
IOD
IOD
2020
A
I
23
5
IOD
IOD
2021
A
I
24
5
IOD
IOD
2022
A
I
25
5
IOD
IOD
2023
A
I
26
5
IOD
IOD
2024
A
I
27
5
IOD
IOD
2025
A
I
28
5
IOD
IOD
2026
A
I
29
5
IOD
IOD
2027
A
NH4
34
6
NH4
NH4
2028
A
CL
35
7
CL
CL
2029
A
NH4
6
6
NH4
NH4
2030
A
NH4
2
6
NH4
NH4
2031
A
NH4
4
6
NH4
NH4
2032
A
NH4
5
6
NH4
NH4
2033
A
NH4
7
6
NH4
NH4
2034
A
I
1
5
IOD
IOD
2035
A
I
2
5
IOD
IOD
2036
A
I
3
5
IOD
IOD
2037
A
GOL
1228
8
GOL
GOL
2038
A
EDO
401
9
EDO
EDO
2039
A
EDO
402
9
EDO
EDO
2040
A
HOH
249
10
HOH
HOH
2101
A
HOH
262
10
HOH
HOH
2102
A
HOH
156
10
HOH
HOH
2103
A
HOH
412
10
HOH
HOH
2104
A
HOH
99
10
HOH
HOH
2105
A
HOH
205
10
HOH
HOH
2106
A
HOH
308
10
HOH
HOH
2107
A
HOH
165
10
HOH
HOH
2108
A
HOH
196
10
HOH
HOH
2109
A
HOH
354
10
HOH
HOH
2110
A
HOH
185
10
HOH
HOH
2111
A
HOH
312
10
HOH
HOH
2112
A
HOH
136
10
HOH
HOH
2113
A
HOH
30
10
HOH
HOH
2114
A
HOH
168
10
HOH
HOH
2115
A
HOH
304
10
HOH
HOH
2116
A
HOH
435
10
HOH
HOH
2117
A
HOH
243
10
HOH
HOH
2118
A
HOH
375
10
HOH
HOH
2119
A
HOH
248
10
HOH
HOH
2120
A
HOH
263
10
HOH
HOH
2121
A
HOH
320
10
HOH
HOH
2122
A
HOH
124
10
HOH
HOH
2123
A
HOH
11
10
HOH
HOH
2124
A
HOH
146
10
HOH
HOH
2125
A
HOH
342
10
HOH
HOH
2126
A
HOH
236
10
HOH
HOH
2127
A
HOH
25
10
HOH
HOH
2128
A
HOH
260
10
HOH
HOH
2129
A
HOH
228
10
HOH
HOH
2130
A
HOH
4
10
HOH
HOH
2131
A
HOH
351
10
HOH
HOH
2132
A
HOH
112
10
HOH
HOH
2133
A
HOH
400
10
HOH
HOH
2134
A
HOH
18
10
HOH
HOH
2135
A
HOH
121
10
HOH
HOH
2136
A
HOH
74
10
HOH
HOH
2137
A
HOH
9
10
HOH
HOH
2138
A
HOH
307
10
HOH
HOH
2139
A
HOH
424
10
HOH
HOH
2140
A
HOH
68
10
HOH
HOH
2141
A
HOH
104
10
HOH
HOH
2142
A
HOH
298
10
HOH
HOH
2143
A
HOH
1
10
HOH
HOH
2144
A
HOH
158
10
HOH
HOH
2145
A
HOH
69
10
HOH
HOH
2146
A
HOH
397
10
HOH
HOH
2147
A
HOH
65
10
HOH
HOH
2148
A
HOH
7
10
HOH
HOH
2149
A
HOH
52
10
HOH
HOH
2150
A
HOH
110
10
HOH
HOH
2151
A
HOH
250
10
HOH
HOH
2152
A
HOH
187
10
HOH
HOH
2153
A
HOH
219
10
HOH
HOH
2154
A
HOH
28
10
HOH
HOH
2155
A
HOH
231
10
HOH
HOH
2156
A
HOH
162
10
HOH
HOH
2157
A
HOH
8
10
HOH
HOH
2158
A
HOH
410
10
HOH
HOH
2159
A
HOH
41
10
HOH
HOH
2160
A
HOH
54
10
HOH
HOH
2161
A
HOH
118
10
HOH
HOH
2162
A
HOH
317
10
HOH
HOH
2163
A
HOH
100
10
HOH
HOH
2164
A
HOH
202
10
HOH
HOH
2165
A
HOH
101
10
HOH
HOH
2166
A
HOH
15
10
HOH
HOH
2167
A
HOH
77
10
HOH
HOH
2168
A
HOH
105
10
HOH
HOH
2169
A
HOH
48
10
HOH
HOH
2170
A
HOH
108
10
HOH
HOH
2171
A
HOH
21
10
HOH
HOH
2172
A
HOH
122
10
HOH
HOH
2173
A
HOH
82
10
HOH
HOH
2174
A
HOH
71
10
HOH
HOH
2175
A
HOH
126
10
HOH
HOH
2176
A
HOH
91
10
HOH
HOH
2177
A
HOH
70
10
HOH
HOH
2178
A
HOH
46
10
HOH
HOH
2179
A
HOH
97
10
HOH
HOH
2180
A
HOH
39
10
HOH
HOH
2181
A
HOH
297
10
HOH
HOH
2182
A
HOH
251
10
HOH
HOH
2183
A
HOH
210
10
HOH
HOH
2184
A
HOH
128
10
HOH
HOH
2185
A
HOH
47
10
HOH
HOH
2186
A
HOH
5
10
HOH
HOH
2187
A
HOH
229
10
HOH
HOH
2188
A
HOH
427
10
HOH
HOH
2189
A
HOH
287
10
HOH
HOH
2190
A
HOH
12
10
HOH
HOH
2191
A
HOH
76
10
HOH
HOH
2192
A
HOH
330
10
HOH
HOH
2193
A
HOH
153
10
HOH
HOH
2194
A
HOH
83
10
HOH
HOH
2195
A
HOH
127
10
HOH
HOH
2196
A
HOH
255
10
HOH
HOH
2197
A
HOH
392
10
HOH
HOH
2198
A
HOH
215
10
HOH
HOH
2199
A
HOH
87
10
HOH
HOH
2200
A
HOH
238
10
HOH
HOH
2201
A
HOH
66
10
HOH
HOH
2202
A
HOH
159
10
HOH
HOH
2203
A
HOH
283
10
HOH
HOH
2204
A
HOH
23
10
HOH
HOH
2205
A
HOH
17
10
HOH
HOH
2206
A
HOH
92
10
HOH
HOH
2207
A
HOH
45
10
HOH
HOH
2208
A
HOH
14
10
HOH
HOH
2209
A
HOH
177
10
HOH
HOH
2210
A
HOH
135
10
HOH
HOH
2211
A
HOH
3
10
HOH
HOH
2212
A
HOH
33
10
HOH
HOH
2213
A
HOH
384
10
HOH
HOH
2214
A
HOH
31
10
HOH
HOH
2215
A
HOH
90
10
HOH
HOH
2216
A
HOH
62
10
HOH
HOH
2217
A
HOH
133
10
HOH
HOH
2218
A
HOH
2
10
HOH
HOH
2219
A
HOH
166
10
HOH
HOH
2220
A
HOH
331
10
HOH
HOH
2221
A
HOH
19
10
HOH
HOH
2222
A
HOH
117
10
HOH
HOH
2223
A
HOH
171
10
HOH
HOH
2224
A
HOH
123
10
HOH
HOH
2225
A
HOH
385
10
HOH
HOH
2226
A
HOH
6
10
HOH
HOH
2227
A
HOH
64
10
HOH
HOH
2228
A
HOH
85
10
HOH
HOH
2229
A
HOH
24
10
HOH
HOH
2230
A
HOH
43
10
HOH
HOH
2231
A
HOH
107
10
HOH
HOH
2232
A
HOH
103
10
HOH
HOH
2233
A
HOH
141
10
HOH
HOH
2234
A
HOH
281
10
HOH
HOH
2235
A
HOH
80
10
HOH
HOH
2236
A
HOH
142
10
HOH
HOH
2237
A
HOH
192
10
HOH
HOH
2238
A
HOH
78
10
HOH
HOH
2239
A
HOH
240
10
HOH
HOH
2240
A
HOH
134
10
HOH
HOH
2241
A
HOH
16
10
HOH
HOH
2242
A
HOH
302
10
HOH
HOH
2243
A
HOH
84
10
HOH
HOH
2244
A
HOH
267
10
HOH
HOH
2245
A
HOH
314
10
HOH
HOH
2246
A
HOH
29
10
HOH
HOH
2247
A
HOH
336
10
HOH
HOH
2248
A
HOH
13
10
HOH
HOH
2249
A
HOH
295
10
HOH
HOH
2250
A
HOH
94
10
HOH
HOH
2251
A
HOH
40
10
HOH
HOH
2252
A
HOH
372
10
HOH
HOH
2253
A
HOH
56
10
HOH
HOH
2254
A
HOH
26
10
HOH
HOH
2255
A
HOH
211
10
HOH
HOH
2256
A
HOH
154
10
HOH
HOH
2257
A
HOH
259
10
HOH
HOH
2258
A
HOH
280
10
HOH
HOH
2259
A
HOH
440
10
HOH
HOH
2260
A
HOH
244
10
HOH
HOH
2261
A
HOH
42
10
HOH
HOH
2262
A
HOH
242
10
HOH
HOH
2263
A
HOH
67
10
HOH
HOH
2264
A
HOH
333
10
HOH
HOH
2265
A
HOH
408
10
HOH
HOH
2266
A
HOH
115
10
HOH
HOH
2267
A
HOH
58
10
HOH
HOH
2268
A
HOH
34
10
HOH
HOH
2269
A
HOH
32
10
HOH
HOH
2270
A
HOH
268
10
HOH
HOH
2271
A
HOH
173
10
HOH
HOH
2272
A
HOH
88
10
HOH
HOH
2273
A
HOH
10
10
HOH
HOH
2274
A
HOH
75
10
HOH
HOH
2275
A
HOH
116
10
HOH
HOH
2276
A
HOH
235
10
HOH
HOH
2277
A
HOH
218
10
HOH
HOH
2278
A
HOH
96
10
HOH
HOH
2279
A
HOH
145
10
HOH
HOH
2280
A
HOH
258
10
HOH
HOH
2281
A
HOH
337
10
HOH
HOH
2282
A
HOH
343
10
HOH
HOH
2283
A
HOH
22
10
HOH
HOH
2284
A
HOH
50
10
HOH
HOH
2285
A
HOH
199
10
HOH
HOH
2286
A
HOH
265
10
HOH
HOH
2287
A
HOH
53
10
HOH
HOH
2288
A
HOH
193
10
HOH
HOH
2289
A
HOH
293
10
HOH
HOH
2290
A
HOH
150
10
HOH
HOH
2291
A
HOH
86
10
HOH
HOH
2292
A
HOH
272
10
HOH
HOH
2293
A
HOH
37
10
HOH
HOH
2294
A
HOH
214
10
HOH
HOH
2295
A
HOH
206
10
HOH
HOH
2296
A
HOH
198
10
HOH
HOH
2297
A
HOH
273
10
HOH
HOH
2298
A
HOH
358
10
HOH
HOH
2299
A
HOH
399
10
HOH
HOH
2300
A
HOH
38
10
HOH
HOH
2301
A
HOH
266
10
HOH
HOH
2302
A
HOH
300
10
HOH
HOH
2303
A
HOH
178
10
HOH
HOH
2304
A
HOH
221
10
HOH
HOH
2305
A
HOH
144
10
HOH
HOH
2306
A
HOH
63
10
HOH
HOH
2307
A
HOH
184
10
HOH
HOH
2308
A
HOH
60
10
HOH
HOH
2309
A
HOH
286
10
HOH
HOH
2310
A
HOH
169
10
HOH
HOH
2311
A
HOH
387
10
HOH
HOH
2312
A
HOH
81
10
HOH
HOH
2313
A
HOH
332
10
HOH
HOH
2314
A
HOH
290
10
HOH
HOH
2315
A
HOH
51
10
HOH
HOH
2316
A
HOH
396
10
HOH
HOH
2317
A
HOH
183
10
HOH
HOH
2318
A
HOH
152
10
HOH
HOH
2319
A
HOH
73
10
HOH
HOH
2320
A
HOH
131
10
HOH
HOH
2321
A
HOH
411
10
HOH
HOH
2322
A
HOH
35
10
HOH
HOH
2323
A
HOH
125
10
HOH
HOH
2324
A
HOH
401
10
HOH
HOH
2325
A
HOH
245
10
HOH
HOH
2326
A
HOH
437
10
HOH
HOH
2327
A
HOH
36
10
HOH
HOH
2328
A
HOH
155
10
HOH
HOH
2329
A
HOH
383
10
HOH
HOH
2330
A
HOH
388
10
HOH
HOH
2331
A
HOH
59
10
HOH
HOH
2332
A
HOH
167
10
HOH
HOH
2333
A
HOH
296
10
HOH
HOH
2334
A
HOH
294
10
HOH
HOH
2335
A
HOH
182
10
HOH
HOH
2336
A
HOH
318
10
HOH
HOH
2337
A
HOH
403
10
HOH
HOH
2338
A
HOH
49
10
HOH
HOH
2339
A
HOH
139
10
HOH
HOH
2340
A
HOH
350
10
HOH
HOH
2341
A
HOH
79
10
HOH
HOH
2342
A
HOH
57
10
HOH
HOH
2343
A
HOH
274
10
HOH
HOH
2344
A
HOH
119
10
HOH
HOH
2345
A
HOH
55
10
HOH
HOH
2346
A
HOH
278
10
HOH
HOH
2347
A
HOH
93
10
HOH
HOH
2348
A
HOH
269
10
HOH
HOH
2349
A
HOH
89
10
HOH
HOH
2350
A
HOH
209
10
HOH
HOH
2351
A
HOH
432
10
HOH
HOH
2352
A
HOH
376
10
HOH
HOH
2353
A
HOH
234
10
HOH
HOH
2354
A
HOH
363
10
HOH
HOH
2355
A
HOH
140
10
HOH
HOH
2356
A
HOH
257
10
HOH
HOH
2357
A
HOH
157
10
HOH
HOH
2358
A
HOH
395
10
HOH
HOH
2359
A
HOH
200
10
HOH
HOH
2360
A
HOH
151
10
HOH
HOH
2361
A
HOH
418
10
HOH
HOH
2362
A
HOH
61
10
HOH
HOH
2363
A
HOH
426
10
HOH
HOH
2364
A
HOH
213
10
HOH
HOH
2365
A
HOH
417
10
HOH
HOH
2366
A
HOH
359
10
HOH
HOH
2367
A
HOH
232
10
HOH
HOH
2368
A
HOH
201
10
HOH
HOH
2369
A
HOH
316
10
HOH
HOH
2370
A
HOH
204
10
HOH
HOH
2371
A
HOH
441
10
HOH
HOH
2372
A
HOH
44
10
HOH
HOH
2373
A
HOH
271
10
HOH
HOH
2374
A
HOH
191
10
HOH
HOH
2375
A
HOH
423
10
HOH
HOH
2376
A
HOH
188
10
HOH
HOH
2377
A
HOH
303
10
HOH
HOH
2378
A
HOH
379
10
HOH
HOH
2379
A
HOH
325
10
HOH
HOH
2380
A
HOH
292
10
HOH
HOH
2381
A
HOH
421
10
HOH
HOH
2382
A
HOH
398
10
HOH
HOH
2383
A
HOH
407
10
HOH
HOH
2384
A
HOH
386
10
HOH
HOH
2385
A
HOH
370
10
HOH
HOH
2386
A
HOH
95
10
HOH
HOH
2387
A
HOH
439
10
HOH
HOH
2388
A
HOH
186
10
HOH
HOH
2389
A
HOH
406
10
HOH
HOH
2390
A
HOH
246
10
HOH
HOH
2391
A
HOH
373
10
HOH
HOH
2392
A
HOH
253
10
HOH
HOH
2393
A
HOH
195
10
HOH
HOH
2394
A
HOH
364
10
HOH
HOH
2395
A
HOH
222
10
HOH
HOH
2396
A
HOH
282
10
HOH
HOH
2397
A
HOH
431
10
HOH
HOH
2398
A
HOH
279
10
HOH
HOH
2399
A
HOH
224
10
HOH
HOH
2400
A
HOH
402
10
HOH
HOH
2401
A
HOH
113
10
HOH
HOH
2402
A
HOH
434
10
HOH
HOH
2403
A
HOH
425
10
HOH
HOH
2404
A
HOH
377
10
HOH
HOH
2405
A
HOH
438
10
HOH
HOH
2406
A
HOH
137
10
HOH
HOH
2407
A
HOH
170
10
HOH
HOH
2408
A
HOH
415
10
HOH
HOH
2409
A
HOH
129
10
HOH
HOH
2410
A
HOH
207
10
HOH
HOH
2411
A
HOH
380
10
HOH
HOH
2412
A
HOH
362
10
HOH
HOH
2413
A
HOH
194
10
HOH
HOH
2414
A
HOH
390
10
HOH
HOH
2415
A
HOH
163
10
HOH
HOH
2416
A
HOH
339
10
HOH
HOH
2417
A
HOH
349
10
HOH
HOH
2418
A
HOH
285
10
HOH
HOH
2419
A
HOH
327
10
HOH
HOH
2420
A
HOH
328
10
HOH
HOH
2421
A
HOH
225
10
HOH
HOH
2422
A
HOH
334
10
HOH
HOH
2423
A
HOH
393
10
HOH
HOH
2424
A
HOH
378
10
HOH
HOH
2425
A
HOH
420
10
HOH
HOH
2426
A
HOH
391
10
HOH
HOH
2427
A
HOH
371
10
HOH
HOH
2428
A
HOH
429
10
HOH
HOH
2429
A
HOH
365
10
HOH
HOH
2430
A
HOH
161
10
HOH
HOH
2431
A
HOH
409
10
HOH
HOH
2432
A
HOH
164
10
HOH
HOH
2433
A
HOH
284
10
HOH
HOH
2434
A
HOH
138
10
HOH
HOH
2435
A
HOH
179
10
HOH
HOH
2436
A
HOH
416
10
HOH
HOH
2437
A
HOH
208
10
HOH
HOH
2438
A
HOH
436
10
HOH
HOH
2439
A
HOH
291
10
HOH
HOH
2440
A
HOH
217
10
HOH
HOH
2441
A
HOH
382
10
HOH
HOH
2442
A
HOH
241
10
HOH
HOH
2443
A
HOH
256
10
HOH
HOH
2444
A
HOH
72
10
HOH
HOH
2445
A
HOH
180
10
HOH
HOH
2446
A
HOH
381
10
HOH
HOH
2447
A
HOH
227
10
HOH
HOH
2448
A
HOH
369
10
HOH
HOH
2449
A
HOH
346
10
HOH
HOH
2450
A
HOH
190
10
HOH
HOH
2451
A
HOH
311
10
HOH
HOH
2452
A
HOH
203
10
HOH
HOH
2453
A
HOH
428
10
HOH
HOH
2454
A
HOH
366
10
HOH
HOH
2455
A
HOH
239
10
HOH
HOH
2456
A
HOH
233
10
HOH
HOH
2457
A
HOH
237
10
HOH
HOH
2458
A
HOH
289
10
HOH
HOH
2459
A
HOH
319
10
HOH
HOH
2460
A
HOH
368
10
HOH
HOH
2461
A
HOH
356
10
HOH
HOH
2462
A
HOH
276
10
HOH
HOH
2463
A
HOH
223
10
HOH
HOH
2464
A
HOH
394
10
HOH
HOH
2465
A
HOH
261
10
HOH
HOH
2466
A
HOH
148
10
HOH
HOH
2467
A
HOH
216
10
HOH
HOH
2468
A
HOH
277
10
HOH
HOH
2469
A
HOH
430
10
HOH
HOH
2470
A
HOH
132
10
HOH
HOH
2471
A
HOH
326
10
HOH
HOH
2472
A
HOH
102
10
HOH
HOH
2473
A
HOH
367
10
HOH
HOH
2474
A
HOH
355
10
HOH
HOH
2475
A
HOH
174
10
HOH
HOH
2476
A
n
1
435
A
n
2
436
A
n
3
437
A
n
4
438
A
n
5
439
A
n
6
440
A
SER
441
n
7
SER
441
A
PRO
442
n
8
PRO
442
A
ILE
443
n
9
ILE
443
A
THR
444
n
10
THR
444
A
GLY
445
n
11
GLY
445
A
LEU
446
n
12
LEU
446
A
VAL
447
n
13
VAL
447
A
TYR
448
n
14
TYR
448
A
ASP
449
n
15
ASP
449
A
GLN
450
n
16
GLN
450
A
ARG
451
n
17
ARG
451
A
MET
452
n
18
MET
452
A
MET
453
n
19
MET
453
A
LEU
454
n
20
LEU
454
A
HIS
455
n
21
HIS
455
A
HIS
456
n
22
HIS
456
A
ASN
457
n
23
ASN
457
A
MET
458
n
24
MET
458
A
TRP
459
n
25
TRP
459
A
ASP
460
n
26
ASP
460
A
SER
461
n
27
SER
461
A
HIS
462
n
28
HIS
462
A
HIS
463
n
29
HIS
463
A
PRO
464
n
30
PRO
464
A
GLU
465
n
31
GLU
465
A
LEU
466
n
32
LEU
466
A
PRO
467
n
33
PRO
467
A
GLN
468
n
34
GLN
468
A
ARG
469
n
35
ARG
469
A
ILE
470
n
36
ILE
470
A
SER
471
n
37
SER
471
A
ARG
472
n
38
ARG
472
A
ILE
473
n
39
ILE
473
A
PHE
474
n
40
PHE
474
A
SER
475
n
41
SER
475
A
ARG
476
n
42
ARG
476
A
HIS
477
n
43
HIS
477
A
GLU
478
n
44
GLU
478
A
GLU
479
n
45
GLU
479
A
LEU
480
n
46
LEU
480
A
ARG
481
n
47
ARG
481
A
LEU
482
n
48
LEU
482
A
LEU
483
n
49
LEU
483
A
SER
484
n
50
SER
484
A
ARG
485
n
51
ARG
485
A
CYS
486
n
52
CYS
486
A
HIS
487
n
53
HIS
487
A
ARG
488
n
54
ARG
488
A
ILE
489
n
55
ILE
489
A
PRO
490
n
56
PRO
490
A
ALA
491
n
57
ALA
491
A
ARG
492
n
58
ARG
492
A
LEU
493
n
59
LEU
493
A
ALA
494
n
60
ALA
494
A
THR
495
n
61
THR
495
A
GLU
496
n
62
GLU
496
A
GLU
497
n
63
GLU
497
A
GLU
498
n
64
GLU
498
A
LEU
499
n
65
LEU
499
A
ALA
500
n
66
ALA
500
A
LEU
501
n
67
LEU
501
A
CYS
502
n
68
CYS
502
A
HIS
503
n
69
HIS
503
A
SER
504
n
70
SER
504
A
SER
505
n
71
SER
505
A
LYS
506
n
72
LYS
506
A
HIS
507
n
73
HIS
507
A
ILE
508
n
74
ILE
508
A
SER
509
n
75
SER
509
A
ILE
510
n
76
ILE
510
A
ILE
511
n
77
ILE
511
A
LYS
512
n
78
LYS
512
A
SER
513
n
79
SER
513
A
SER
514
n
80
SER
514
A
GLU
515
n
81
GLU
515
A
HIS
516
n
82
HIS
516
A
MET
517
n
83
MET
517
A
LYS
518
n
84
LYS
518
A
PRO
519
n
85
PRO
519
A
ARG
520
n
86
ARG
520
A
ASP
521
n
87
ASP
521
A
LEU
522
n
88
LEU
522
A
ASN
523
n
89
ASN
523
A
ARG
524
n
90
ARG
524
A
LEU
525
n
91
LEU
525
A
GLY
526
n
92
GLY
526
A
ASP
527
n
93
ASP
527
A
GLU
528
n
94
GLU
528
A
TYR
529
n
95
TYR
529
A
ASN
530
n
96
ASN
530
A
SER
531
n
97
SER
531
A
ILE
532
n
98
ILE
532
A
PHE
533
n
99
PHE
533
A
ILE
534
n
100
ILE
534
A
SER
535
n
101
SER
535
A
ASN
536
n
102
ASN
536
A
GLU
537
n
103
GLU
537
A
SER
538
n
104
SER
538
A
TYR
539
n
105
TYR
539
A
THR
540
n
106
THR
540
A
CYS
541
n
107
CYS
541
A
ALA
542
n
108
ALA
542
A
LEU
543
n
109
LEU
543
A
LEU
544
n
110
LEU
544
A
ALA
545
n
111
ALA
545
A
ALA
546
n
112
ALA
546
A
GLY
547
n
113
GLY
547
A
SER
548
n
114
SER
548
A
CYS
549
n
115
CYS
549
A
PHE
550
n
116
PHE
550
A
ASN
551
n
117
ASN
551
A
SER
552
n
118
SER
552
A
ALA
553
n
119
ALA
553
A
GLN
554
n
120
GLN
554
A
ALA
555
n
121
ALA
555
A
ILE
556
n
122
ILE
556
A
LEU
557
n
123
LEU
557
A
THR
558
n
124
THR
558
A
GLY
559
n
125
GLY
559
A
GLN
560
n
126
GLN
560
A
VAL
561
n
127
VAL
561
A
ARG
562
n
128
ARG
562
A
ASN
563
n
129
ASN
563
A
ALA
564
n
130
ALA
564
A
VAL
565
n
131
VAL
565
A
ALA
566
n
132
ALA
566
A
ILE
567
n
133
ILE
567
A
VAL
568
n
134
VAL
568
A
ARG
569
n
135
ARG
569
A
PRO
570
n
136
PRO
570
A
PRO
571
n
137
PRO
571
A
GLY
572
n
138
GLY
572
A
HIS
573
n
139
HIS
573
A
HIS
574
n
140
HIS
574
A
ALA
575
n
141
ALA
575
A
GLU
576
n
142
GLU
576
A
LYS
577
n
143
LYS
577
A
ASP
578
n
144
ASP
578
A
THR
579
n
145
THR
579
A
ALA
580
n
146
ALA
580
A
CYS
581
n
147
CYS
581
A
GLY
582
n
148
GLY
582
A
PHE
583
n
149
PHE
583
A
CYS
584
n
150
CYS
584
A
PHE
585
n
151
PHE
585
A
PHE
586
n
152
PHE
586
A
ASN
587
n
153
ASN
587
A
THR
588
n
154
THR
588
A
ALA
589
n
155
ALA
589
A
ALA
590
n
156
ALA
590
A
LEU
591
n
157
LEU
591
A
THR
592
n
158
THR
592
A
ALA
593
n
159
ALA
593
A
ARG
594
n
160
ARG
594
A
TYR
595
n
161
TYR
595
A
ALA
596
n
162
ALA
596
A
GLN
597
n
163
GLN
597
A
SER
598
n
164
SER
598
A
ILE
599
n
165
ILE
599
A
THR
600
n
166
THR
600
A
ARG
601
n
167
ARG
601
A
GLU
602
n
168
GLU
602
A
SER
603
n
169
SER
603
A
LEU
604
n
170
LEU
604
A
ARG
605
n
171
ARG
605
A
VAL
606
n
172
VAL
606
A
LEU
607
n
173
LEU
607
A
ILE
608
n
174
ILE
608
A
VAL
609
n
175
VAL
609
A
ASP
610
n
176
ASP
610
A
TRP
611
n
177
TRP
611
A
ASP
612
n
178
ASP
612
A
VAL
613
n
179
VAL
613
A
HIS
614
n
180
HIS
614
A
HIS
615
n
181
HIS
615
A
GLY
616
n
182
GLY
616
A
ASN
617
n
183
ASN
617
A
GLY
618
n
184
GLY
618
A
THR
619
n
185
THR
619
A
GLN
620
n
186
GLN
620
A
HIS
621
n
187
HIS
621
A
ILE
622
n
188
ILE
622
A
PHE
623
n
189
PHE
623
A
GLU
624
n
190
GLU
624
A
GLU
625
n
191
GLU
625
A
ASP
626
n
192
ASP
626
A
ASP
627
n
193
ASP
627
A
SER
628
n
194
SER
628
A
VAL
629
n
195
VAL
629
A
LEU
630
n
196
LEU
630
A
TYR
631
n
197
TYR
631
A
ILE
632
n
198
ILE
632
A
SER
633
n
199
SER
633
A
LEU
634
n
200
LEU
634
A
HIS
635
n
201
HIS
635
A
ARG
636
n
202
ARG
636
A
TYR
637
n
203
TYR
637
A
GLU
638
n
204
GLU
638
A
ASP
639
n
205
ASP
639
A
GLY
640
n
206
GLY
640
A
ALA
641
n
207
ALA
641
A
PHE
642
n
208
PHE
642
A
PHE
643
n
209
PHE
643
A
PRO
644
n
210
PRO
644
A
ASN
645
n
211
ASN
645
A
SER
646
n
212
SER
646
A
GLU
647
n
213
GLU
647
A
ASP
648
n
214
ASP
648
A
ALA
649
n
215
ALA
649
A
ASN
650
n
216
ASN
650
A
TYR
651
n
217
TYR
651
A
ASP
652
n
218
ASP
652
A
LYS
653
n
219
LYS
653
A
VAL
654
n
220
VAL
654
A
GLY
655
n
221
GLY
655
A
LEU
656
n
222
LEU
656
A
GLY
657
n
223
GLY
657
A
LYS
658
n
224
LYS
658
A
GLY
659
n
225
GLY
659
A
ARG
660
n
226
ARG
660
A
GLY
661
n
227
GLY
661
A
TYR
662
n
228
TYR
662
A
ASN
663
n
229
ASN
663
A
VAL
664
n
230
VAL
664
A
ASN
665
n
231
ASN
665
A
ILE
666
n
232
ILE
666
A
PRO
667
n
233
PRO
667
A
TRP
668
n
234
TRP
668
A
ASN
669
n
235
ASN
669
A
GLY
670
n
236
GLY
670
A
GLY
671
n
237
GLY
671
A
LYS
672
n
238
LYS
672
A
MET
673
n
239
MET
673
A
GLY
674
n
240
GLY
674
A
ASP
675
n
241
ASP
675
A
PRO
676
n
242
PRO
676
A
GLU
677
n
243
GLU
677
A
TYR
678
n
244
TYR
678
A
MET
679
n
245
MET
679
A
ALA
680
n
246
ALA
680
A
ALA
681
n
247
ALA
681
A
PHE
682
n
248
PHE
682
A
HIS
683
n
249
HIS
683
A
HIS
684
n
250
HIS
684
A
LEU
685
n
251
LEU
685
A
VAL
686
n
252
VAL
686
A
MET
687
n
253
MET
687
A
PRO
688
n
254
PRO
688
A
ILE
689
n
255
ILE
689
A
ALA
690
n
256
ALA
690
A
ARG
691
n
257
ARG
691
A
GLU
692
n
258
GLU
692
A
PHE
693
n
259
PHE
693
A
ALA
694
n
260
ALA
694
A
PRO
695
n
261
PRO
695
A
GLU
696
n
262
GLU
696
A
LEU
697
n
263
LEU
697
A
VAL
698
n
264
VAL
698
A
LEU
699
n
265
LEU
699
A
VAL
700
n
266
VAL
700
A
SER
701
n
267
SER
701
A
ALA
702
n
268
ALA
702
A
GLY
703
n
269
GLY
703
A
PHE
704
n
270
PHE
704
A
ASP
705
n
271
ASP
705
A
ALA
706
n
272
ALA
706
A
ALA
707
n
273
ALA
707
A
ARG
708
n
274
ARG
708
A
GLY
709
n
275
GLY
709
A
ASP
710
n
276
ASP
710
A
PRO
711
n
277
PRO
711
A
LEU
712
n
278
LEU
712
A
GLY
713
n
279
GLY
713
A
GLY
714
n
280
GLY
714
A
PHE
715
n
281
PHE
715
A
GLN
716
n
282
GLN
716
A
VAL
717
n
283
VAL
717
A
THR
718
n
284
THR
718
A
PRO
719
n
285
PRO
719
A
GLU
720
n
286
GLU
720
A
GLY
721
n
287
GLY
721
A
TYR
722
n
288
TYR
722
A
ALA
723
n
289
ALA
723
A
HIS
724
n
290
HIS
724
A
LEU
725
n
291
LEU
725
A
THR
726
n
292
THR
726
A
HIS
727
n
293
HIS
727
A
GLN
728
n
294
GLN
728
A
LEU
729
n
295
LEU
729
A
MET
730
n
296
MET
730
A
SER
731
n
297
SER
731
A
LEU
732
n
298
LEU
732
A
ALA
733
n
299
ALA
733
A
ALA
734
n
300
ALA
734
A
GLY
735
n
301
GLY
735
A
ARG
736
n
302
ARG
736
A
VAL
737
n
303
VAL
737
A
LEU
738
n
304
LEU
738
A
ILE
739
n
305
ILE
739
A
ILE
740
n
306
ILE
740
A
LEU
741
n
307
LEU
741
A
GLU
742
n
308
GLU
742
A
GLY
743
n
309
GLY
743
A
GLY
744
n
310
GLY
744
A
TYR
745
n
311
TYR
745
A
ASN
746
n
312
ASN
746
A
LEU
747
n
313
LEU
747
A
THR
748
n
314
THR
748
A
SER
749
n
315
SER
749
A
ILE
750
n
316
ILE
750
A
SER
751
n
317
SER
751
A
GLU
752
n
318
GLU
752
A
SER
753
n
319
SER
753
A
MET
754
n
320
MET
754
A
SER
755
n
321
SER
755
A
MET
756
n
322
MET
756
A
CYS
757
n
323
CYS
757
A
THR
758
n
324
THR
758
A
SER
759
n
325
SER
759
A
MET
760
n
326
MET
760
A
LEU
761
n
327
LEU
761
A
LEU
762
n
328
LEU
762
A
GLY
763
n
329
GLY
763
A
ASP
764
n
330
ASP
764
A
SER
765
n
331
SER
765
A
PRO
766
n
332
PRO
766
A
PRO
767
n
333
PRO
767
A
SER
768
n
334
SER
768
A
LEU
769
n
335
LEU
769
A
n
336
770
A
n
337
771
A
LEU
772
n
338
LEU
772
A
THR
773
n
339
THR
773
A
PRO
774
n
340
PRO
774
A
LEU
775
n
341
LEU
775
A
LYS
776
n
342
LYS
776
A
THR
777
n
343
THR
777
A
SER
778
n
344
SER
778
A
ALA
779
n
345
ALA
779
A
THR
780
n
346
THR
780
A
VAL
781
n
347
VAL
781
A
SER
782
n
348
SER
782
A
ILE
783
n
349
ILE
783
A
ASN
784
n
350
ASN
784
A
ASN
785
n
351
ASN
785
A
VAL
786
n
352
VAL
786
A
LEU
787
n
353
LEU
787
A
ARG
788
n
354
ARG
788
A
ALA
789
n
355
ALA
789
A
HIS
790
n
356
HIS
790
A
ALA
791
n
357
ALA
791
A
PRO
792
n
358
PRO
792
A
PHE
793
n
359
PHE
793
A
TRP
794
n
360
TRP
794
A
SER
795
n
361
SER
795
A
SER
796
n
362
SER
796
A
LEU
797
n
363
LEU
797
A
ARG
798
n
364
ARG
798
A
author_and_software_defined_assembly
PISA
1
monomeric
6410
-46
13080
A
ASP
610
A
O
ASP
176
1_555
A
K
2002
C
K
K
1_555
A
ASP
610
A
OD1
ASP
176
1_555
71.6
A
ASP
610
A
O
ASP
176
1_555
A
K
2002
C
K
K
1_555
A
ASP
612
A
O
ASP
178
1_555
100.1
A
ASP
610
A
OD1
ASP
176
1_555
A
K
2002
C
K
K
1_555
A
ASP
612
A
O
ASP
178
1_555
97.6
A
ASP
610
A
O
ASP
176
1_555
A
K
2002
C
K
K
1_555
A
HIS
614
A
O
HIS
180
1_555
165.2
A
ASP
610
A
OD1
ASP
176
1_555
A
K
2002
C
K
K
1_555
A
HIS
614
A
O
HIS
180
1_555
93.9
A
ASP
612
A
O
ASP
178
1_555
A
K
2002
C
K
K
1_555
A
HIS
614
A
O
HIS
180
1_555
78.7
A
ASP
610
A
O
ASP
176
1_555
A
K
2002
C
K
K
1_555
A
SER
633
A
OG
SER
199
1_555
85.5
A
ASP
610
A
OD1
ASP
176
1_555
A
K
2002
C
K
K
1_555
A
SER
633
A
OG
SER
199
1_555
109.5
A
ASP
612
A
O
ASP
178
1_555
A
K
2002
C
K
K
1_555
A
SER
633
A
OG
SER
199
1_555
152.7
A
HIS
614
A
O
HIS
180
1_555
A
K
2002
C
K
K
1_555
A
SER
633
A
OG
SER
199
1_555
102.3
A
ASP
610
A
O
ASP
176
1_555
A
K
2002
C
K
K
1_555
A
LEU
634
A
O
LEU
200
1_555
78.2
A
ASP
610
A
OD1
ASP
176
1_555
A
K
2002
C
K
K
1_555
A
LEU
634
A
O
LEU
200
1_555
144.4
A
ASP
612
A
O
ASP
178
1_555
A
K
2002
C
K
K
1_555
A
LEU
634
A
O
LEU
200
1_555
69.5
A
HIS
614
A
O
HIS
180
1_555
A
K
2002
C
K
K
1_555
A
LEU
634
A
O
LEU
200
1_555
114.5
A
SER
633
A
OG
SER
199
1_555
A
K
2002
C
K
K
1_555
A
LEU
634
A
O
LEU
200
1_555
85.8
A
ASP
612
A
OD1
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
ASP
612
A
OD2
ASP
178
1_555
53.2
A
ASP
612
A
OD1
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
HIS
614
A
ND1
HIS
180
1_555
102.2
A
ASP
612
A
OD2
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
HIS
614
A
ND1
HIS
180
1_555
155.2
A
ASP
612
A
OD1
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
ASP
705
A
OD2
ASP
271
1_555
106.0
A
ASP
612
A
OD2
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
ASP
705
A
OD2
ASP
271
1_555
87.9
A
HIS
614
A
ND1
HIS
180
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
ASP
705
A
OD2
ASP
271
1_555
97.1
A
ASP
612
A
OD1
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O2
TSN
1_555
161.2
A
ASP
612
A
OD2
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O2
TSN
1_555
114.5
A
HIS
614
A
ND1
HIS
180
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O2
TSN
1_555
90.1
A
ASP
705
A
OD2
ASP
271
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O2
TSN
1_555
86.2
A
ASP
612
A
OD1
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O1
TSN
1_555
87.0
A
ASP
612
A
OD2
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O1
TSN
1_555
81.9
A
HIS
614
A
ND1
HIS
180
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O1
TSN
1_555
102.2
A
ASP
705
A
OD2
ASP
271
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O1
TSN
1_555
153.9
A
TSN
2004
E
O2
TSN
1_555
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O1
TSN
1_555
76.5
A
PHE
623
A
O
PHE
189
1_555
A
K
2003
D
K
K
1_555
A
ASP
626
A
O
ASP
192
1_555
73.4
A
PHE
623
A
O
PHE
189
1_555
A
K
2003
D
K
K
1_555
A
VAL
629
A
O
VAL
195
1_555
115.2
A
ASP
626
A
O
ASP
192
1_555
A
K
2003
D
K
K
1_555
A
VAL
629
A
O
VAL
195
1_555
73.0
A
PHE
623
A
O
PHE
189
1_555
A
K
2003
D
K
K
1_555
A
TYR
662
A
O
TYR
228
1_555
160.2
A
ASP
626
A
O
ASP
192
1_555
A
K
2003
D
K
K
1_555
A
TYR
662
A
O
TYR
228
1_555
111.8
A
VAL
629
A
O
VAL
195
1_555
A
K
2003
D
K
K
1_555
A
TYR
662
A
O
TYR
228
1_555
84.3
A
PHE
623
A
O
PHE
189
1_555
A
K
2003
D
K
K
1_555
A
HOH
2131
PA
O
HOH
1_555
81.5
A
ASP
626
A
O
ASP
192
1_555
A
K
2003
D
K
K
1_555
A
HOH
2131
PA
O
HOH
1_555
82.4
A
VAL
629
A
O
VAL
195
1_555
A
K
2003
D
K
K
1_555
A
HOH
2131
PA
O
HOH
1_555
143.6
A
TYR
662
A
O
TYR
228
1_555
A
K
2003
D
K
K
1_555
A
HOH
2131
PA
O
HOH
1_555
80.4
A
PHE
623
A
O
PHE
189
1_555
A
K
2003
D
K
K
1_555
A
HOH
2219
PA
O
HOH
1_555
72.2
A
ASP
626
A
O
ASP
192
1_555
A
K
2003
D
K
K
1_555
A
HOH
2219
PA
O
HOH
1_555
144.4
A
VAL
629
A
O
VAL
195
1_555
A
K
2003
D
K
K
1_555
A
HOH
2219
PA
O
HOH
1_555
131.0
A
TYR
662
A
O
TYR
228
1_555
A
K
2003
D
K
K
1_555
A
HOH
2219
PA
O
HOH
1_555
98.0
A
HOH
2131
PA
O
HOH
1_555
A
K
2003
D
K
K
1_555
A
HOH
2219
PA
O
HOH
1_555
84.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
HIS
487
A
O
HIS
53
A
N
THR
444
A
N
THR
10
A
N
GLY
445
A
N
GLY
11
A
O
ASN
563
A
O
ASN
129
A
N
ALA
566
A
N
ALA
132
A
O
ILE
739
A
O
ILE
305
A
O
LEU
738
A
O
LEU
304
A
N
VAL
700
A
N
VAL
266
A
O
LEU
699
A
O
LEU
265
A
N
LEU
607
A
N
LEU
173
A
N
ASP
610
A
N
ASP
176
A
O
ILE
632
A
O
ILE
198
A
N
TYR
631
A
N
TYR
197
A
O
VAL
664
A
O
VAL
230
1
A
IOD
2007
H
IOD
1
A
OG
SER
441
A
OG
SER
7
1
Y
1
A
SER
435
A
SER
1
1
Y
1
A
ASN
436
A
ASN
2
1
Y
1
A
ALA
437
A
ALA
3
1
Y
1
A
GLY
438
A
GLY
4
1
Y
1
A
GLY
439
A
GLY
5
1
Y
1
A
SER
440
A
SER
6
1
Y
1
A
ASP
770
A
ASP
336
1
Y
1
A
HIS
771
A
HIS
337
1
Y
1
A
A
I
O
IOD
HOH
2026
2234
2.18
A
1
A
THR
600
-129.21
-88.71
1
A
TYR
637
-128.99
-51.43
1
A
LYS
672
B
58.89
91.55
1
A
LEU
685
-123.31
-61.90
1
A
GLU
742
-111.63
-112.95
0.1631
0.1295
0.1313
1.590
44.011
2843
55910
5.08
99.95
0.12
1
FREE R-VALUE
1.35
MOLECULAR REPLACEMENT
14.40
0.90
1.11
PDB entry 5EEI
ML
FLAT BULK SOLVENT MODEL
1.590
44.011
376
3225
72
0
2777
0.009
2948
1.296
4005
14.413
1086
0.056
433
0.007
526
0.2064
0.1349
1.6177
128
2622
100.00
0.1722
0.1221
1.6472
139
2628
100.00
0.1695
0.1176
1.6788
122
2615
100.00
0.1668
0.1192
1.7131
127
2624
100.00
0.1620
0.1136
1.7504
148
2636
100.00
0.1786
0.1113
1.7911
139
2627
100.00
0.1525
0.1090
1.8359
137
2606
100.00
0.1509
0.1109
1.8855
153
2617
100.00
0.1498
0.1116
1.9410
124
2635
100.00
0.1472
0.1072
2.0036
129
2674
100.00
0.1514
0.1144
2.0752
144
2615
100.00
0.1679
0.1231
2.1583
137
2649
100.00
0.1548
0.1207
2.2566
149
2638
100.00
0.1567
0.1192
2.3755
135
2654
100.00
0.1749
0.1307
2.5243
147
2666
100.00
0.1530
0.1353
2.7192
163
2654
100.00
0.1685
0.1413
2.9928
143
2660
100.00
0.1743
0.1477
3.4257
169
2672
100.00
0.1627
0.1305
4.3155
156
2724
100.00
0.1619
0.1559
44.0274
154
2851
100.00
1.59
50.0
5EEK
56038
55924
0.061
1
23.7
2.5
100
0.33
1.59
1.69
4.3
1
2.4
100
refinement
PHENIX
1.8.3_1479
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with trichostatin A
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
7
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
5
N
N
5
N
N
5
N
N
8
N
N
9
N
N
9
N
N
10
N
N
A
ASP
449
A
ASP
15
HELX_P
A
HIS
455
A
HIS
21
5
AA1
7
A
PRO
467
A
PRO
33
HELX_P
A
LEU
480
A
LEU
46
1
AA2
14
A
LEU
482
A
LEU
48
HELX_P
A
CYS
486
A
CYS
52
5
AA3
5
A
THR
495
A
THR
61
HELX_P
A
ALA
500
A
ALA
66
1
AA4
6
A
SER
504
A
SER
70
HELX_P
A
SER
514
A
SER
80
1
AA5
11
A
GLU
515
A
GLU
81
HELX_P
A
MET
517
A
MET
83
5
AA6
3
A
LYS
518
A
LYS
84
HELX_P
A
GLU
528
A
GLU
94
1
AA7
11
A
GLU
537
A
GLU
103
HELX_P
A
THR
558
A
THR
124
1
AA8
22
A
ASN
587
A
ASN
153
HELX_P
A
ILE
599
A
ILE
165
1
AA9
13
A
GLY
616
A
GLY
182
HELX_P
A
GLU
624
A
GLU
190
1
AB1
9
A
GLU
638
A
GLU
204
HELX_P
A
ALA
641
A
ALA
207
5
AB2
4
A
SER
646
A
SER
212
HELX_P
A
ASN
650
A
ASN
216
5
AB3
5
A
LEU
656
A
LEU
222
HELX_P
A
ARG
660
A
ARG
226
5
AB4
5
A
GLY
674
A
GLY
240
HELX_P
A
LEU
685
A
LEU
251
1
AB5
12
A
LEU
685
A
LEU
251
HELX_P
A
ALA
694
A
ALA
260
1
AB6
10
A
THR
718
A
THR
284
HELX_P
A
MET
730
A
MET
296
1
AB7
13
A
SER
731
A
SER
297
HELX_P
A
GLY
735
A
GLY
301
5
AB8
5
A
ASN
746
A
ASN
312
HELX_P
A
LEU
762
A
LEU
328
1
AB9
17
A
LYS
776
A
LYS
342
HELX_P
A
ALA
791
A
ALA
357
1
AC1
16
A
TRP
794
A
TRP
360
HELX_P
A
ARG
798
A
ARG
364
5
AC2
5
metalc
2.810
A
ASP
610
A
O
ASP
176
1_555
A
K
2002
C
K
K
1_555
metalc
2.596
A
ASP
610
A
OD1
ASP
176
1_555
A
K
2002
C
K
K
1_555
metalc
1.976
A
ASP
612
A
OD1
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
metalc
2.691
A
ASP
612
A
OD2
ASP
178
1_555
A
ZN
2001
B
ZN
ZN
1_555
metalc
2.540
A
ASP
612
A
O
ASP
178
1_555
A
K
2002
C
K
K
1_555
metalc
2.095
A
HIS
614
A
ND1
HIS
180
1_555
A
ZN
2001
B
ZN
ZN
1_555
metalc
2.698
A
HIS
614
A
O
HIS
180
1_555
A
K
2002
C
K
K
1_555
metalc
2.787
A
PHE
623
A
O
PHE
189
1_555
A
K
2003
D
K
K
1_555
metalc
3.181
A
ASP
626
A
O
ASP
192
1_555
A
K
2003
D
K
K
1_555
metalc
2.786
A
VAL
629
A
O
VAL
195
1_555
A
K
2003
D
K
K
1_555
metalc
2.722
A
SER
633
A
OG
SER
199
1_555
A
K
2002
C
K
K
1_555
metalc
2.616
A
LEU
634
A
O
LEU
200
1_555
A
K
2002
C
K
K
1_555
metalc
2.923
A
TYR
662
A
O
TYR
228
1_555
A
K
2003
D
K
K
1_555
metalc
1.963
A
ASP
705
A
OD2
ASP
271
1_555
A
ZN
2001
B
ZN
ZN
1_555
metalc
2.392
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O2
TSN
1_555
metalc
2.170
A
ZN
2001
B
ZN
ZN
1_555
A
TSN
2004
E
O1
TSN
1_555
metalc
2.806
A
K
2003
D
K
K
1_555
A
HOH
2131
PA
O
HOH
1_555
metalc
2.919
A
K
2003
D
K
K
1_555
A
HOH
2219
PA
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
HYDROLASE-HYDROLASE INHIBITOR complex
A
ARG
569
A
ARG
135
1
A
PRO
570
A
PRO
136
-4.30
A
PHE
643
A
PHE
209
1
A
PRO
644
A
PRO
210
7.20
A7YT55_DANRE
UNP
1
288
A7YT55
SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKP
RDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSI
TRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYM
AAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTS
MLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR
288
646
5EEK
440
798
A7YT55
A
1
6
364
1
expression tag
SER
435
5EEK
A
A7YT55
UNP
1
1
expression tag
ASN
436
5EEK
A
A7YT55
UNP
2
1
expression tag
ALA
437
5EEK
A
A7YT55
UNP
3
1
expression tag
GLY
438
5EEK
A
A7YT55
UNP
4
1
expression tag
GLY
439
5EEK
A
A7YT55
UNP
5
8
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
HIS
487
A
HIS
53
A
ARG
488
A
ARG
54
A
THR
444
A
THR
10
A
VAL
447
A
VAL
13
A
ASN
563
A
ASN
129
A
ALA
566
A
ALA
132
A
VAL
737
A
VAL
303
A
LEU
741
A
LEU
307
A
LEU
697
A
LEU
263
A
ALA
702
A
ALA
268
A
VAL
606
A
VAL
172
A
ASP
610
A
ASP
176
A
VAL
629
A
VAL
195
A
ARG
636
A
ARG
202
A
ASN
663
A
ASN
229
A
TRP
668
A
TRP
234
binding site for residue ZN A 2001
A
ZN
2001
Software
4
binding site for residue K A 2002
A
K
2002
Software
5
binding site for residue K A 2003
A
K
2003
Software
6
binding site for residue TSN A 2004
A
TSN
2004
Software
14
binding site for residue IOD A 2005
A
IOD
2005
Software
2
binding site for residue IOD A 2006
A
IOD
2006
Software
4
binding site for residue IOD A 2007
A
IOD
2007
Software
2
binding site for residue IOD A 2010
A
IOD
2010
Software
1
binding site for residue IOD A 2011
A
IOD
2011
Software
3
binding site for residue IOD A 2012
A
IOD
2012
Software
4
binding site for residue IOD A 2013
A
IOD
2013
Software
1
binding site for residue IOD A 2015
A
IOD
2015
Software
3
binding site for residue IOD A 2017
A
IOD
2017
Software
3
binding site for residue IOD A 2018
A
IOD
2018
Software
2
binding site for residue IOD A 2019
A
IOD
2019
Software
1
binding site for residue IOD A 2020
A
IOD
2020
Software
6
binding site for residue IOD A 2022
A
IOD
2022
Software
3
binding site for residue IOD A 2026
A
IOD
2026
Software
6
binding site for residue IOD A 2027
A
IOD
2027
Software
2
binding site for residue NH4 A 2028
A
NH4
2028
Software
2
binding site for residue CL A 2029
A
CL
2029
Software
3
binding site for residue NH4 A 2030
A
NH4
2030
Software
4
binding site for residue NH4 A 2031
A
NH4
2031
Software
5
binding site for residue NH4 A 2032
A
NH4
2032
Software
2
binding site for residue NH4 A 2033
A
NH4
2033
Software
4
binding site for residue NH4 A 2034
A
NH4
2034
Software
2
binding site for residue IOD A 2035
A
IOD
2035
Software
1
binding site for residue IOD A 2036
A
IOD
2036
Software
2
binding site for residue IOD A 2037
A
IOD
2037
Software
2
binding site for residue GOL A 2038
A
GOL
2038
Software
6
binding site for residue EDO A 2039
A
EDO
2039
Software
3
binding site for residue EDO A 2040
A
EDO
2040
Software
8
binding site for residues IOD A 2008 and IOD A 2009
A
IOD
2008
Software
3
binding site for residues IOD A 2023 and IOD A 2024
A
IOD
2023
Software
3
A
ASP
612
A
ASP
178
4
1_555
A
HIS
614
A
HIS
180
4
1_555
A
ASP
705
A
ASP
271
4
1_555
A
TSN
2004
E
TSN
4
1_555
A
ASP
610
A
ASP
176
5
1_555
A
ASP
612
A
ASP
178
5
1_555
A
HIS
614
A
HIS
180
5
1_555
A
SER
633
A
SER
199
5
1_555
A
LEU
634
A
LEU
200
5
1_555
A
PHE
623
A
PHE
189
6
1_555
A
ASP
626
A
ASP
192
6
1_555
A
VAL
629
A
VAL
195
6
1_555
A
TYR
662
A
TYR
228
6
1_555
A
HOH
2131
PA
HOH
6
1_555
A
HOH
2219
PA
HOH
6
1_555
A
HIS
463
A
HIS
29
14
1_555
A
PRO
464
A
PRO
30
14
1_555
A
HIS
573
A
HIS
139
14
1_555
A
HIS
574
A
HIS
140
14
1_555
A
PHE
583
A
PHE
149
14
1_555
A
ASP
612
A
ASP
178
14
1_555
A
HIS
614
A
HIS
180
14
1_555
A
PHE
643
A
PHE
209
14
1_555
A
ASP
705
A
ASP
271
14
1_555
A
LEU
712
A
LEU
278
14
1_555
A
TYR
745
A
TYR
311
14
1_555
A
ZN
2001
B
ZN
14
1_555
A
GOL
2038
MA
GOL
14
1_555
A
HOH
2309
PA
HOH
14
1_555
A
GLY
655
A
GLY
221
2
1_555
A
NH4
2031
FA
NH4
2
1_555
A
LYS
518
A
LYS
84
4
1_555
A
PRO
519
A
PRO
85
4
1_555
A
ARG
520
A
ARG
86
4
1_555
A
NH4
2030
EA
NH4
4
1_555
A
TRP
459
A
TRP
25
2
1_555
A
TRP
459
A
TRP
25
2
2_565
A
GLY
657
A
GLY
223
1
1_555
A
HIS
724
A
HIS
290
3
1_555
A
HIS
727
A
HIS
293
3
1_555
A
GLN
728
A
GLN
294
3
1_555
A
ALA
694
A
ALA
260
4
1_555
A
PRO
695
A
PRO
261
4
1_555
A
ALA
733
A
ALA
299
4
1_555
A
NH4
2032
GA
NH4
4
1_555
A
ARG
708
A
ARG
274
1
1_555
A
PHE
643
A
PHE
209
3
1_555
A
HOH
2198
PA
HOH
3
4_555
A
HOH
2389
PA
HOH
3
1_555
A
SER
778
A
SER
344
3
1_555
A
HOH
2422
PA
HOH
3
1_555
A
HOH
2424
PA
HOH
3
1_555
A
HIS
463
A
HIS
29
2
1_555
A
HOH
2130
PA
HOH
2
2_565
A
GLN
450
A
GLN
16
1
1_555
A
GLU
478
A
GLU
44
6
1_555
A
ARG
481
A
ARG
47
6
1_555
A
LEU
483
A
LEU
49
6
1_555
A
SER
484
A
SER
50
6
1_555
A
NH4
2033
HA
NH4
6
1_555
A
HOH
2435
PA
HOH
6
1_555
A
ARG
451
A
ARG
17
3
1_555
A
NH4
2028
CA
NH4
3
1_555
A
HOH
2316
PA
HOH
3
1_555
A
SER
513
A
SER
79
6
3_445
A
ARG
691
A
ARG
257
6
1_555
A
CL
2029
DA
CL
6
3_445
A
HOH
2234
PA
HOH
6
1_555
A
HOH
2269
PA
HOH
6
3_445
A
HOH
2280
PA
HOH
6
1_555
A
LYS
776
A
LYS
342
2
1_555
A
THR
777
A
THR
343
2
1_555
A
ARG
451
A
ARG
17
2
1_555
A
IOD
2022
W
IOD
2
1_555
A
LYS
512
A
LYS
78
3
1_555
A
HIS
516
A
HIS
82
3
1_555
A
IOD
2026
AA
IOD
3
3_455
A
TRP
459
A
TRP
25
4
2_565
A
LYS
518
A
LYS
84
4
1_555
A
IOD
2006
G
IOD
4
1_555
A
HOH
2184
PA
HOH
4
1_555
A
GLN
620
A
GLN
186
5
1_555
A
HIS
621
A
HIS
187
5
1_555
A
GLU
624
A
GLU
190
5
1_555
A
IOD
2005
F
IOD
5
1_555
A
HOH
2113
PA
HOH
5
1_555
A
ARG
691
A
ARG
257
2
1_555
A
IOD
2012
M
IOD
2
1_555
A
ARG
481
A
ARG
47
4
1_555
A
SER
484
A
SER
50
4
1_555
A
PRO
792
A
PRO
358
4
1_554
A
IOD
2020
U
IOD
4
1_555
A
ASN
784
A
ASN
350
2
1_555
A
IOD
2035
JA
IOD
2
1_555
A
NH4
2034
IA
NH4
1
1_555
A
PRO
774
A
PRO
340
2
1_555
A
LEU
775
A
LEU
341
2
1_555
A
HIS
487
A
HIS
53
2
1_555
A
GLN
560
A
GLN
126
2
1_555
A
ARG
601
A
ARG
167
6
4_555
A
ARG
605
A
ARG
171
6
4_555
A
GLU
696
A
GLU
262
6
4_555
A
TSN
2004
E
TSN
6
1_555
A
HOH
2318
PA
HOH
6
4_555
A
HOH
2327
PA
HOH
6
1_555
A
TYR
529
A
TYR
95
3
1_555
A
SER
531
A
SER
97
3
1_555
A
HOH
2245
PA
HOH
3
1_555
A
TYR
448
A
TYR
14
8
1_555
A
ASP
449
A
ASP
15
8
1_555
A
GLN
450
A
GLN
16
8
1_555
A
PHE
474
A
PHE
40
8
1_555
A
ARG
488
A
ARG
54
8
1_555
A
HOH
2101
PA
HOH
8
1_555
A
HOH
2106
PA
HOH
8
1_555
A
HOH
2360
PA
HOH
8
1_555
A
SER
603
A
SER
169
3
4_555
A
PRO
711
A
PRO
277
3
1_555
A
HOH
2433
PA
HOH
3
4_555
A
SER
505
A
SER
71
3
1_555
A
LYS
506
A
LYS
72
3
1_555
A
HOH
2400
PA
HOH
3
3_455
18
P 21 21 2