0.026968
0.000000
0.001177
0.000000
0.015671
0.000000
0.000000
0.000000
0.019234
0.00000
0.00000
0.00000
Ambaye, N.D.
Watson, G.M.
Wilce, M.C.J.
Wilce, G.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
92.50
90.00
37.081
63.811
52.040
C5 H10 N2 O3 S
178.209
{[(2R)-2,3-diamino-3-oxopropyl]sulfanyl}acetic acid
peptide-like
C7 H15 N O3
161.199
n
(2~{S})-2-azanyl-3-butoxy-propanoic acid
L-peptide linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Sci Rep
2045-2322
6
27060
27060
10.1038/srep27060
27257138
Unexpected involvement of staple leads to redesign of selective bicyclic peptide inhibitor of Grb7.
2016
100
1
CCD
2010-10-16
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.954
1.0
MX2
Australian Synchrotron
0.954
SYNCHROTRON
AUSTRALIAN SYNCHROTRON BEAMLINE MX2
13690.711
Growth factor receptor-bound protein 7
UNP rersidues 415-532
2
man
polymer
1465.541
Bicyclic Peptide Inhibitor
2
syn
polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
18.015
water
170
nat
water
B47,Epidermal growth factor receptor GRB-7,GRB7 adapter protein
no
no
GSPASGTSLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLY
FSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL
GSPASGTSLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLY
FSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL
A,B
polypeptide(L)
no
yes
SFEGYDNSFP(73C)(48V)
SFEGYDNSFPXX
L,M
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
120
GRB7
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.04
39.73
VAPOR DIFFUSION, HANGING DROP
0.1 M bis-tris pH 5.5, 25% (w/v) PEG 3350
293
repository
Initial release
1
0
2016-06-15
N
RCSB
Y
RCSB
2015-10-23
REL
REL
PO4
PHOSPHATE ION
HOH
water
32630
synthetic construct
sample
1
12
PO4
2
3
PO4
PO4
601
A
PO4
1
3
PO4
PO4
601
B
HOH
84
4
HOH
HOH
701
A
HOH
178
4
HOH
HOH
702
A
HOH
51
4
HOH
HOH
703
A
HOH
104
4
HOH
HOH
704
A
HOH
102
4
HOH
HOH
705
A
HOH
40
4
HOH
HOH
706
A
HOH
118
4
HOH
HOH
707
A
HOH
107
4
HOH
HOH
708
A
HOH
11
4
HOH
HOH
709
A
HOH
101
4
HOH
HOH
710
A
HOH
23
4
HOH
HOH
711
A
HOH
177
4
HOH
HOH
712
A
HOH
46
4
HOH
HOH
713
A
HOH
18
4
HOH
HOH
714
A
HOH
1
4
HOH
HOH
715
A
HOH
59
4
HOH
HOH
716
A
HOH
36
4
HOH
HOH
717
A
HOH
99
4
HOH
HOH
718
A
HOH
113
4
HOH
HOH
719
A
HOH
97
4
HOH
HOH
720
A
HOH
41
4
HOH
HOH
721
A
HOH
26
4
HOH
HOH
722
A
HOH
67
4
HOH
HOH
723
A
HOH
60
4
HOH
HOH
724
A
HOH
119
4
HOH
HOH
725
A
HOH
52
4
HOH
HOH
726
A
HOH
38
4
HOH
HOH
727
A
HOH
81
4
HOH
HOH
728
A
HOH
141
4
HOH
HOH
729
A
HOH
5
4
HOH
HOH
730
A
HOH
6
4
HOH
HOH
731
A
HOH
15
4
HOH
HOH
732
A
HOH
126
4
HOH
HOH
733
A
HOH
4
4
HOH
HOH
734
A
HOH
82
4
HOH
HOH
735
A
HOH
17
4
HOH
HOH
736
A
HOH
48
4
HOH
HOH
737
A
HOH
130
4
HOH
HOH
738
A
HOH
127
4
HOH
HOH
739
A
HOH
136
4
HOH
HOH
740
A
HOH
12
4
HOH
HOH
741
A
HOH
120
4
HOH
HOH
742
A
HOH
35
4
HOH
HOH
743
A
HOH
140
4
HOH
HOH
744
A
HOH
22
4
HOH
HOH
745
A
HOH
155
4
HOH
HOH
746
A
HOH
56
4
HOH
HOH
747
A
HOH
31
4
HOH
HOH
748
A
HOH
10
4
HOH
HOH
749
A
HOH
134
4
HOH
HOH
750
A
HOH
30
4
HOH
HOH
751
A
HOH
182
4
HOH
HOH
752
A
HOH
181
4
HOH
HOH
753
A
HOH
94
4
HOH
HOH
754
A
HOH
157
4
HOH
HOH
755
A
HOH
77
4
HOH
HOH
756
A
HOH
100
4
HOH
HOH
757
A
HOH
172
4
HOH
HOH
758
A
HOH
27
4
HOH
HOH
759
A
HOH
75
4
HOH
HOH
760
A
HOH
111
4
HOH
HOH
761
A
HOH
105
4
HOH
HOH
762
A
HOH
183
4
HOH
HOH
763
A
HOH
174
4
HOH
HOH
764
A
HOH
153
4
HOH
HOH
765
A
HOH
116
4
HOH
HOH
766
A
HOH
128
4
HOH
HOH
767
A
HOH
91
4
HOH
HOH
768
A
HOH
131
4
HOH
HOH
769
A
HOH
112
4
HOH
HOH
770
A
HOH
152
4
HOH
HOH
771
A
HOH
58
4
HOH
HOH
772
A
HOH
29
4
HOH
HOH
773
A
HOH
163
4
HOH
HOH
774
A
HOH
85
4
HOH
HOH
775
A
HOH
180
4
HOH
HOH
776
A
HOH
137
4
HOH
HOH
777
A
HOH
144
4
HOH
HOH
778
A
HOH
45
4
HOH
HOH
779
A
HOH
114
4
HOH
HOH
780
A
HOH
167
4
HOH
HOH
701
B
HOH
65
4
HOH
HOH
702
B
HOH
185
4
HOH
HOH
703
B
HOH
76
4
HOH
HOH
704
B
HOH
64
4
HOH
HOH
705
B
HOH
115
4
HOH
HOH
706
B
HOH
34
4
HOH
HOH
707
B
HOH
24
4
HOH
HOH
708
B
HOH
179
4
HOH
HOH
709
B
HOH
123
4
HOH
HOH
710
B
HOH
96
4
HOH
HOH
711
B
HOH
68
4
HOH
HOH
712
B
HOH
78
4
HOH
HOH
713
B
HOH
37
4
HOH
HOH
714
B
HOH
55
4
HOH
HOH
715
B
HOH
149
4
HOH
HOH
716
B
HOH
3
4
HOH
HOH
717
B
HOH
125
4
HOH
HOH
718
B
HOH
16
4
HOH
HOH
719
B
HOH
54
4
HOH
HOH
720
B
HOH
57
4
HOH
HOH
721
B
HOH
2
4
HOH
HOH
722
B
HOH
13
4
HOH
HOH
723
B
HOH
98
4
HOH
HOH
724
B
HOH
21
4
HOH
HOH
725
B
HOH
49
4
HOH
HOH
726
B
HOH
70
4
HOH
HOH
727
B
HOH
160
4
HOH
HOH
728
B
HOH
86
4
HOH
HOH
729
B
HOH
39
4
HOH
HOH
730
B
HOH
14
4
HOH
HOH
731
B
HOH
9
4
HOH
HOH
732
B
HOH
69
4
HOH
HOH
733
B
HOH
173
4
HOH
HOH
734
B
HOH
53
4
HOH
HOH
735
B
HOH
8
4
HOH
HOH
736
B
HOH
151
4
HOH
HOH
737
B
HOH
28
4
HOH
HOH
738
B
HOH
20
4
HOH
HOH
739
B
HOH
25
4
HOH
HOH
740
B
HOH
33
4
HOH
HOH
741
B
HOH
146
4
HOH
HOH
742
B
HOH
132
4
HOH
HOH
743
B
HOH
19
4
HOH
HOH
744
B
HOH
71
4
HOH
HOH
745
B
HOH
50
4
HOH
HOH
746
B
HOH
74
4
HOH
HOH
747
B
HOH
142
4
HOH
HOH
748
B
HOH
44
4
HOH
HOH
749
B
HOH
79
4
HOH
HOH
750
B
HOH
121
4
HOH
HOH
751
B
HOH
147
4
HOH
HOH
752
B
HOH
61
4
HOH
HOH
753
B
HOH
32
4
HOH
HOH
754
B
HOH
108
4
HOH
HOH
755
B
HOH
95
4
HOH
HOH
756
B
HOH
156
4
HOH
HOH
757
B
HOH
166
4
HOH
HOH
758
B
HOH
135
4
HOH
HOH
759
B
HOH
80
4
HOH
HOH
760
B
HOH
164
4
HOH
HOH
761
B
HOH
47
4
HOH
HOH
762
B
HOH
184
4
HOH
HOH
763
B
HOH
92
4
HOH
HOH
764
B
HOH
168
4
HOH
HOH
765
B
HOH
93
4
HOH
HOH
766
B
HOH
66
4
HOH
HOH
767
B
HOH
150
4
HOH
HOH
768
B
HOH
89
4
HOH
HOH
769
B
HOH
42
4
HOH
HOH
101
L
HOH
87
4
HOH
HOH
102
L
HOH
158
4
HOH
HOH
103
L
HOH
169
4
HOH
HOH
104
L
HOH
117
4
HOH
HOH
105
L
HOH
7
4
HOH
HOH
106
L
HOH
83
4
HOH
HOH
107
L
HOH
73
4
HOH
HOH
108
L
HOH
148
4
HOH
HOH
109
L
HOH
103
4
HOH
HOH
110
L
HOH
133
4
HOH
HOH
111
L
HOH
62
4
HOH
HOH
112
L
HOH
106
4
HOH
HOH
101
M
HOH
63
4
HOH
HOH
102
M
HOH
72
4
HOH
HOH
103
M
HOH
129
4
HOH
HOH
104
M
HOH
122
4
HOH
HOH
105
M
HOH
165
4
HOH
HOH
106
M
HOH
90
4
HOH
HOH
107
M
HOH
161
4
HOH
HOH
108
M
HOH
145
4
HOH
HOH
109
M
n
1
413
A
n
2
414
A
n
3
415
A
n
4
416
A
n
5
417
A
n
6
418
A
n
7
419
A
n
8
420
A
n
9
421
A
n
10
422
A
n
11
423
A
n
12
424
A
n
13
425
A
HIS
426
n
14
HIS
426
A
ARG
427
n
15
ARG
427
A
THR
428
n
16
THR
428
A
GLN
429
n
17
GLN
429
A
LEU
430
n
18
LEU
430
A
TRP
431
n
19
TRP
431
A
PHE
432
n
20
PHE
432
A
HIS
433
n
21
HIS
433
A
GLY
434
n
22
GLY
434
A
ARG
435
n
23
ARG
435
A
ILE
436
n
24
ILE
436
A
SER
437
n
25
SER
437
A
ARG
438
n
26
ARG
438
A
GLU
439
n
27
GLU
439
A
GLU
440
n
28
GLU
440
A
SER
441
n
29
SER
441
A
GLN
442
n
30
GLN
442
A
ARG
443
n
31
ARG
443
A
LEU
444
n
32
LEU
444
A
ILE
445
n
33
ILE
445
A
GLY
446
n
34
GLY
446
A
GLN
447
n
35
GLN
447
A
GLN
448
n
36
GLN
448
A
GLY
449
n
37
GLY
449
A
LEU
450
n
38
LEU
450
A
VAL
451
n
39
VAL
451
A
ASP
452
n
40
ASP
452
A
GLY
453
n
41
GLY
453
A
LEU
454
n
42
LEU
454
A
PHE
455
n
43
PHE
455
A
LEU
456
n
44
LEU
456
A
VAL
457
n
45
VAL
457
A
ARG
458
n
46
ARG
458
A
GLU
459
n
47
GLU
459
A
SER
460
n
48
SER
460
A
GLN
461
n
49
GLN
461
A
ARG
462
n
50
ARG
462
A
ASN
463
n
51
ASN
463
A
PRO
464
n
52
PRO
464
A
GLN
465
n
53
GLN
465
A
GLY
466
n
54
GLY
466
A
PHE
467
n
55
PHE
467
A
VAL
468
n
56
VAL
468
A
LEU
469
n
57
LEU
469
A
SER
470
n
58
SER
470
A
LEU
471
n
59
LEU
471
A
CYS
472
n
60
CYS
472
A
HIS
473
n
61
HIS
473
A
LEU
474
n
62
LEU
474
A
GLN
475
n
63
GLN
475
A
LYS
476
n
64
LYS
476
A
VAL
477
n
65
VAL
477
A
LYS
478
n
66
LYS
478
A
HIS
479
n
67
HIS
479
A
TYR
480
n
68
TYR
480
A
LEU
481
n
69
LEU
481
A
ILE
482
n
70
ILE
482
A
LEU
483
n
71
LEU
483
A
PRO
484
n
72
PRO
484
A
SER
485
n
73
SER
485
A
GLU
486
n
74
GLU
486
A
GLU
487
n
75
GLU
487
A
GLU
488
n
76
GLU
488
A
GLY
489
n
77
GLY
489
A
ARG
490
n
78
ARG
490
A
LEU
491
n
79
LEU
491
A
TYR
492
n
80
TYR
492
A
PHE
493
n
81
PHE
493
A
SER
494
n
82
SER
494
A
MET
495
n
83
MET
495
A
ASP
496
n
84
ASP
496
A
ASP
497
n
85
ASP
497
A
GLY
498
n
86
GLY
498
A
GLN
499
n
87
GLN
499
A
THR
500
n
88
THR
500
A
ARG
501
n
89
ARG
501
A
PHE
502
n
90
PHE
502
A
THR
503
n
91
THR
503
A
ASP
504
n
92
ASP
504
A
LEU
505
n
93
LEU
505
A
LEU
506
n
94
LEU
506
A
GLN
507
n
95
GLN
507
A
LEU
508
n
96
LEU
508
A
VAL
509
n
97
VAL
509
A
GLU
510
n
98
GLU
510
A
PHE
511
n
99
PHE
511
A
HIS
512
n
100
HIS
512
A
GLN
513
n
101
GLN
513
A
LEU
514
n
102
LEU
514
A
ASN
515
n
103
ASN
515
A
ARG
516
n
104
ARG
516
A
GLY
517
n
105
GLY
517
A
ILE
518
n
106
ILE
518
A
LEU
519
n
107
LEU
519
A
PRO
520
n
108
PRO
520
A
CYS
521
n
109
CYS
521
A
LEU
522
n
110
LEU
522
A
LEU
523
n
111
LEU
523
A
ARG
524
n
112
ARG
524
A
HIS
525
n
113
HIS
525
A
CYS
526
n
114
CYS
526
A
CYS
527
n
115
CYS
527
A
THR
528
n
116
THR
528
A
n
117
529
A
n
118
530
A
n
119
531
A
n
120
532
A
n
1
413
B
n
2
414
B
n
3
415
B
n
4
416
B
n
5
417
B
n
6
418
B
n
7
419
B
n
8
420
B
n
9
421
B
n
10
422
B
n
11
423
B
ALA
424
n
12
ALA
424
B
ILE
425
n
13
ILE
425
B
HIS
426
n
14
HIS
426
B
ARG
427
n
15
ARG
427
B
THR
428
n
16
THR
428
B
GLN
429
n
17
GLN
429
B
LEU
430
n
18
LEU
430
B
TRP
431
n
19
TRP
431
B
PHE
432
n
20
PHE
432
B
HIS
433
n
21
HIS
433
B
GLY
434
n
22
GLY
434
B
ARG
435
n
23
ARG
435
B
ILE
436
n
24
ILE
436
B
SER
437
n
25
SER
437
B
ARG
438
n
26
ARG
438
B
GLU
439
n
27
GLU
439
B
GLU
440
n
28
GLU
440
B
SER
441
n
29
SER
441
B
GLN
442
n
30
GLN
442
B
ARG
443
n
31
ARG
443
B
LEU
444
n
32
LEU
444
B
ILE
445
n
33
ILE
445
B
GLY
446
n
34
GLY
446
B
GLN
447
n
35
GLN
447
B
GLN
448
n
36
GLN
448
B
GLY
449
n
37
GLY
449
B
LEU
450
n
38
LEU
450
B
VAL
451
n
39
VAL
451
B
ASP
452
n
40
ASP
452
B
GLY
453
n
41
GLY
453
B
LEU
454
n
42
LEU
454
B
PHE
455
n
43
PHE
455
B
LEU
456
n
44
LEU
456
B
VAL
457
n
45
VAL
457
B
ARG
458
n
46
ARG
458
B
GLU
459
n
47
GLU
459
B
SER
460
n
48
SER
460
B
GLN
461
n
49
GLN
461
B
ARG
462
n
50
ARG
462
B
ASN
463
n
51
ASN
463
B
PRO
464
n
52
PRO
464
B
GLN
465
n
53
GLN
465
B
GLY
466
n
54
GLY
466
B
PHE
467
n
55
PHE
467
B
VAL
468
n
56
VAL
468
B
LEU
469
n
57
LEU
469
B
SER
470
n
58
SER
470
B
LEU
471
n
59
LEU
471
B
CYS
472
n
60
CYS
472
B
HIS
473
n
61
HIS
473
B
LEU
474
n
62
LEU
474
B
GLN
475
n
63
GLN
475
B
LYS
476
n
64
LYS
476
B
VAL
477
n
65
VAL
477
B
LYS
478
n
66
LYS
478
B
HIS
479
n
67
HIS
479
B
TYR
480
n
68
TYR
480
B
LEU
481
n
69
LEU
481
B
ILE
482
n
70
ILE
482
B
LEU
483
n
71
LEU
483
B
PRO
484
n
72
PRO
484
B
SER
485
n
73
SER
485
B
GLU
486
n
74
GLU
486
B
GLU
487
n
75
GLU
487
B
GLU
488
n
76
GLU
488
B
GLY
489
n
77
GLY
489
B
ARG
490
n
78
ARG
490
B
LEU
491
n
79
LEU
491
B
TYR
492
n
80
TYR
492
B
PHE
493
n
81
PHE
493
B
SER
494
n
82
SER
494
B
MET
495
n
83
MET
495
B
ASP
496
n
84
ASP
496
B
ASP
497
n
85
ASP
497
B
GLY
498
n
86
GLY
498
B
GLN
499
n
87
GLN
499
B
THR
500
n
88
THR
500
B
ARG
501
n
89
ARG
501
B
PHE
502
n
90
PHE
502
B
THR
503
n
91
THR
503
B
ASP
504
n
92
ASP
504
B
LEU
505
n
93
LEU
505
B
LEU
506
n
94
LEU
506
B
GLN
507
n
95
GLN
507
B
LEU
508
n
96
LEU
508
B
VAL
509
n
97
VAL
509
B
GLU
510
n
98
GLU
510
B
PHE
511
n
99
PHE
511
B
HIS
512
n
100
HIS
512
B
GLN
513
n
101
GLN
513
B
LEU
514
n
102
LEU
514
B
ASN
515
n
103
ASN
515
B
ARG
516
n
104
ARG
516
B
GLY
517
n
105
GLY
517
B
ILE
518
n
106
ILE
518
B
LEU
519
n
107
LEU
519
B
PRO
520
n
108
PRO
520
B
CYS
521
n
109
CYS
521
B
LEU
522
n
110
LEU
522
B
LEU
523
n
111
LEU
523
B
ARG
524
n
112
ARG
524
B
HIS
525
n
113
HIS
525
B
CYS
526
n
114
CYS
526
B
CYS
527
n
115
CYS
527
B
n
116
528
B
n
117
529
B
n
118
530
B
n
119
531
B
n
120
532
B
SER
1
n
1
SER
1
L
PHE
2
n
2
PHE
2
L
GLU
3
n
3
GLU
3
L
GLY
4
n
4
GLY
4
L
TYR
5
n
5
TYR
5
L
ASP
6
n
6
ASP
6
L
ASN
7
n
7
ASN
7
L
SER
8
n
8
SER
8
L
PHE
9
n
9
PHE
9
L
PRO
10
n
10
PRO
10
L
73C
11
n
11
73C
11
L
48V
12
n
12
48V
12
L
SER
1
n
1
SER
1
M
PHE
2
n
2
PHE
2
M
GLU
3
n
3
GLU
3
M
GLY
4
n
4
GLY
4
M
TYR
5
n
5
TYR
5
M
ASP
6
n
6
ASP
6
M
ASN
7
n
7
ASN
7
M
SER
8
n
8
SER
8
M
PHE
9
n
9
PHE
9
M
PRO
10
n
10
PRO
10
M
73C
11
n
11
73C
11
M
48V
12
n
12
48V
12
M
1.8619
-1.5009
0.4704
7.7919
3.0604
5.7627
-0.1983
-0.2358
0.1726
-0.0579
0.1836
-1.1743
0.2774
0.9601
-0.1446
0.1831
0.1800
0.0914
0.5545
0.0330
0.4458
refined
18.1557
-2.0809
7.9530
X-RAY DIFFRACTION
3.3378
-2.4345
-2.7972
8.1568
-0.8875
3.6893
0.1372
-0.1760
-0.7263
-0.4408
-0.0743
-0.1781
1.5714
1.0384
-0.1462
0.4409
0.1748
0.0615
0.2710
0.0140
0.3900
refined
10.7086
-13.3248
8.8526
X-RAY DIFFRACTION
2.6036
0.1350
-0.7337
3.2664
-0.7761
7.0062
-0.1151
0.0452
-0.1568
-0.2552
-0.0481
-0.1900
0.5577
0.3759
0.1797
0.1946
0.0649
0.0384
0.2102
-0.0101
0.2132
refined
7.1891
-3.0350
7.0155
X-RAY DIFFRACTION
4.1705
0.6232
-0.3746
4.6344
0.8214
4.8736
0.0221
0.0137
0.0520
-0.0950
-0.0131
-0.2222
-0.0557
0.4634
0.0249
0.1122
0.0222
0.0033
0.1911
-0.0075
0.1911
refined
7.4937
6.9424
10.3358
X-RAY DIFFRACTION
1.8668
0.6975
-1.1171
5.6496
1.8519
6.0533
-0.1133
-0.1120
0.0006
0.7542
0.0228
-1.3151
0.1129
1.0456
0.0506
0.2665
-0.0847
-0.1223
0.4992
0.0260
0.4798
refined
17.7517
27.7843
20.3536
X-RAY DIFFRACTION
3.6495
2.3412
1.7538
4.8170
2.0576
5.5515
-0.0604
0.1890
0.3816
0.0905
0.0848
-0.3475
-0.9943
0.8408
-0.1006
0.3680
-0.1318
-0.0334
0.2348
0.0140
0.3455
refined
9.3235
38.4874
14.6037
X-RAY DIFFRACTION
3.5618
-0.4234
0.1290
2.9213
0.0268
5.3585
-0.0404
-0.3420
0.1636
0.4512
-0.0597
-0.2484
-0.3062
0.3502
0.0802
0.2956
-0.0667
-0.0646
0.2040
-0.0137
0.2283
refined
7.2816
30.7283
21.2349
X-RAY DIFFRACTION
5.2739
-1.0139
-0.0234
9.6336
-2.3911
6.3570
-0.0133
-0.2280
-0.2815
0.1804
0.0041
0.2092
0.2916
-0.0163
-0.1951
0.2142
-0.0144
-0.0150
0.1890
-0.0247
0.1571
refined
3.7041
25.2451
22.6619
X-RAY DIFFRACTION
4.6490
-0.5476
0.7136
5.3270
-0.0949
6.6206
-0.0438
-0.0670
-0.0401
0.1465
-0.0276
-0.2866
0.0872
0.3331
0.0470
0.1339
-0.0207
-0.0045
0.1559
-0.0162
0.1979
refined
7.0079
19.6643
16.3816
X-RAY DIFFRACTION
3.7200
-3.6560
0.4428
8.5612
2.9240
2.3247
-0.0217
-0.0254
-0.2087
-0.1698
-0.1518
0.8309
0.5120
-0.6177
0.2019
0.2303
-0.0330
-0.0043
0.2365
-0.0122
0.2685
refined
-2.7112
-1.6130
2.6823
X-RAY DIFFRACTION
5.2280
1.0339
-1.9316
5.9046
3.0433
2.7715
0.0582
0.1705
0.1436
0.0744
-0.1835
0.6259
-0.7473
-0.6710
0.2043
0.2400
0.0417
0.0031
0.2143
-0.0123
0.2149
refined
-3.7942
28.2722
23.0136
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 426 through 437 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 438 through 447 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 448 through 487 )
X-RAY DIFFRACTION
4
chain 'A' and (resid 488 through 528 )
X-RAY DIFFRACTION
5
chain 'B' and (resid 424 through 437 )
X-RAY DIFFRACTION
6
chain 'B' and (resid 438 through 454 )
X-RAY DIFFRACTION
7
chain 'B' and (resid 455 through 475 )
X-RAY DIFFRACTION
8
chain 'B' and (resid 476 through 487 )
X-RAY DIFFRACTION
9
chain 'B' and (resid 488 through 527 )
X-RAY DIFFRACTION
10
chain 'L' and (resid 1 through 10 )
X-RAY DIFFRACTION
11
chain 'M' and (resid 1 through 10 )
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
1190
-9
6190
1180
-8
6220
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
492
A
O
TYR
80
A
N
SER
485
A
N
SER
73
A
O
ILE
482
A
O
ILE
70
A
N
PHE
467
A
N
PHE
55
A
O
CYS
472
A
O
CYS
60
A
N
LEU
454
A
N
LEU
42
A
N
PHE
455
A
N
PHE
43
A
O
HIS
525
A
O
HIS
113
B
O
TYR
492
B
O
TYR
80
B
N
SER
485
B
N
SER
73
B
O
ILE
482
B
O
ILE
70
B
N
PHE
467
B
N
PHE
55
B
O
CYS
472
B
O
CYS
60
B
N
LEU
454
B
N
LEU
42
B
N
PHE
455
B
N
PHE
43
B
O
HIS
525
B
O
HIS
113
1
A
CG
HIS
426
A
CG
HIS
14
1
Y
1
A
ND1
HIS
426
A
ND1
HIS
14
1
Y
1
A
CD2
HIS
426
A
CD2
HIS
14
1
Y
1
A
CE1
HIS
426
A
CE1
HIS
14
1
Y
1
A
NE2
HIS
426
A
NE2
HIS
14
1
Y
1
A
CG
ARG
427
A
CG
ARG
15
1
Y
1
A
CD
ARG
427
A
CD
ARG
15
1
Y
1
A
NE
ARG
427
A
NE
ARG
15
1
Y
1
A
CZ
ARG
427
A
CZ
ARG
15
1
Y
1
A
NH1
ARG
427
A
NH1
ARG
15
1
Y
1
A
NH2
ARG
427
A
NH2
ARG
15
1
Y
1
A
CG
ARG
435
A
CG
ARG
23
1
Y
1
A
CD
ARG
435
A
CD
ARG
23
1
Y
1
A
NE
ARG
435
A
NE
ARG
23
1
Y
1
A
CZ
ARG
435
A
CZ
ARG
23
1
Y
1
A
NH1
ARG
435
A
NH1
ARG
23
1
Y
1
A
NH2
ARG
435
A
NH2
ARG
23
1
Y
1
A
CG
GLU
486
A
CG
GLU
74
1
Y
1
A
CD
GLU
486
A
CD
GLU
74
1
Y
1
A
OE1
GLU
486
A
OE1
GLU
74
1
Y
1
A
OE2
GLU
486
A
OE2
GLU
74
1
Y
1
A
CG
GLU
488
A
CG
GLU
76
1
Y
1
A
CD
GLU
488
A
CD
GLU
76
1
Y
1
A
OE1
GLU
488
A
OE1
GLU
76
1
Y
1
A
OE2
GLU
488
A
OE2
GLU
76
1
Y
1
A
CG
ARG
490
A
CG
ARG
78
1
Y
1
A
CD
ARG
490
A
CD
ARG
78
1
Y
1
A
NE
ARG
490
A
NE
ARG
78
1
Y
1
A
CZ
ARG
490
A
CZ
ARG
78
1
Y
1
A
NH1
ARG
490
A
NH1
ARG
78
1
Y
1
A
NH2
ARG
490
A
NH2
ARG
78
1
Y
1
B
CG
ARG
427
B
CG
ARG
15
1
Y
1
B
CD
ARG
427
B
CD
ARG
15
1
Y
1
B
NE
ARG
427
B
NE
ARG
15
1
Y
1
B
CZ
ARG
427
B
CZ
ARG
15
1
Y
1
B
NH1
ARG
427
B
NH1
ARG
15
1
Y
1
B
NH2
ARG
427
B
NH2
ARG
15
1
Y
1
B
CG
ARG
435
B
CG
ARG
23
1
Y
1
B
CD
ARG
435
B
CD
ARG
23
1
Y
1
B
NE
ARG
435
B
NE
ARG
23
1
Y
1
B
CZ
ARG
435
B
CZ
ARG
23
1
Y
1
B
NH1
ARG
435
B
NH1
ARG
23
1
Y
1
B
NH2
ARG
435
B
NH2
ARG
23
1
Y
1
B
CG
GLU
486
B
CG
GLU
74
1
Y
1
B
CD
GLU
486
B
CD
GLU
74
1
Y
1
B
OE1
GLU
486
B
OE1
GLU
74
1
Y
1
B
OE2
GLU
486
B
OE2
GLU
74
1
Y
1
B
CG
GLU
488
B
CG
GLU
76
1
Y
1
B
CD
GLU
488
B
CD
GLU
76
1
Y
1
B
OE1
GLU
488
B
OE1
GLU
76
1
Y
1
B
OE2
GLU
488
B
OE2
GLU
76
1
Y
1
B
CG
ARG
490
B
CG
ARG
78
1
Y
1
B
CD
ARG
490
B
CD
ARG
78
1
Y
1
B
NE
ARG
490
B
NE
ARG
78
1
Y
1
B
CZ
ARG
490
B
CZ
ARG
78
1
Y
1
B
NH1
ARG
490
B
NH1
ARG
78
1
Y
1
B
NH2
ARG
490
B
NH2
ARG
78
1
Y
1
L
N
73C
11
C
N
73C
11
1
Y
1
L
CA
73C
11
C
CA
73C
11
1
Y
1
L
C
73C
11
C
C
73C
11
1
Y
1
L
O
73C
11
C
O
73C
11
1
Y
1
L
CB
73C
11
C
CB
73C
11
1
Y
1
M
N
73C
11
D
N
73C
11
1
Y
1
M
CA
73C
11
D
CA
73C
11
1
Y
1
M
C
73C
11
D
C
73C
11
1
Y
1
M
O
73C
11
D
O
73C
11
1
Y
1
M
CB
73C
11
D
CB
73C
11
1
Y
1
A
GLY
413
A
GLY
1
1
Y
1
A
SER
414
A
SER
2
1
Y
1
A
PRO
415
A
PRO
3
1
Y
1
A
ALA
416
A
ALA
4
1
Y
1
A
SER
417
A
SER
5
1
Y
1
A
GLY
418
A
GLY
6
1
Y
1
A
THR
419
A
THR
7
1
Y
1
A
SER
420
A
SER
8
1
Y
1
A
LEU
421
A
LEU
9
1
Y
1
A
SER
422
A
SER
10
1
Y
1
A
ALA
423
A
ALA
11
1
Y
1
A
ALA
424
A
ALA
12
1
Y
1
A
ILE
425
A
ILE
13
1
Y
1
A
ARG
529
A
ARG
117
1
Y
1
A
VAL
530
A
VAL
118
1
Y
1
A
ALA
531
A
ALA
119
1
Y
1
A
LEU
532
A
LEU
120
1
Y
1
B
GLY
413
B
GLY
1
1
Y
1
B
SER
414
B
SER
2
1
Y
1
B
PRO
415
B
PRO
3
1
Y
1
B
ALA
416
B
ALA
4
1
Y
1
B
SER
417
B
SER
5
1
Y
1
B
GLY
418
B
GLY
6
1
Y
1
B
THR
419
B
THR
7
1
Y
1
B
SER
420
B
SER
8
1
Y
1
B
LEU
421
B
LEU
9
1
Y
1
B
SER
422
B
SER
10
1
Y
1
B
ALA
423
B
ALA
11
1
Y
1
B
THR
528
B
THR
116
1
Y
1
B
ARG
529
B
ARG
117
1
Y
1
B
VAL
530
B
VAL
118
1
Y
1
B
ALA
531
B
ALA
119
1
Y
1
B
LEU
532
B
LEU
120
1
Y
1
B
B
O
O
HOH
HOH
714
718
2.17
1
A
L
O
O
HOH
HOH
752
109
2.17
1
M
M
CB
C4
SER
73C
1
11
2.18
1
A
ASP
496
-141.09
41.23
0.1961
0.1734
0.1746
1.600
40.306
1604
31909
5.03
99.64
0.14
1
FREE R-VALUE
1.35
24.08
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.600
40.306
170
2027
10
0
1847
0.005
1904
0.935
2563
13.143
687
0.037
274
0.005
331
0.2994
0.2889
1.6517
147
2725
100.00
0.2915
0.2422
1.7107
155
2733
100.00
0.2780
0.2113
1.7792
147
2748
99.00
0.2485
0.1995
1.8602
160
2729
100.00
0.2184
0.1719
1.9583
125
2767
100.00
0.1875
0.1731
2.0810
136
2762
100.00
0.2211
0.1734
2.2416
144
2763
100.00
0.1897
0.1757
2.4672
121
2794
100.00
0.1915
0.1841
2.8241
138
2765
100.00
0.2025
0.1660
3.5578
158
2758
100.00
0.1629
0.1512
40.3185
173
2761
98.00
1.600
40.310
5EEQ
31961
1
99.8
refinement
PHENIX
1.9_1692
data extraction
PDB_EXTRACT
3.15
data reduction
XDS
data scaling
SCALA
phasing
MOLREP
Growth factor receptor-bound protein 7, Bicyclic Peptide Inhibitor
Grb7 SH2 with the G7-B1 bicyclic peptide inhibitor
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
SER
437
A
SER
25
HELX_P
A
GLN
448
A
GLN
36
1
AA1
12
A
ASP
504
A
ASP
92
HELX_P
A
GLN
513
A
GLN
101
1
AA2
10
B
ALA
424
B
ALA
12
HELX_P
B
GLN
429
B
GLN
17
5
AA3
6
B
SER
437
B
SER
25
HELX_P
B
GLN
448
B
GLN
36
1
AA4
12
B
ASP
504
B
ASP
92
HELX_P
B
GLN
513
B
GLN
101
1
AA5
10
covale
1.320
both
L
SER
1
C
N
SER
1
1_555
L
48V
12
C
C09
48V
12
1_555
covale
1.324
none
L
SER
1
C
OG
SER
1
1_555
L
73C
11
C
C4
73C
11
1_555
covale
1.329
none
L
SER
8
C
OG
SER
8
1_555
L
73C
11
C
C1
73C
11
1_555
covale
1.320
one
L
PRO
10
C
C
PRO
10
1_555
L
48V
12
C
N01
48V
12
1_555
covale
1.312
both
M
SER
1
D
N
SER
1
1_555
M
48V
12
D
C09
48V
12
1_555
covale
1.321
none
M
SER
1
D
OG
SER
1
1_555
M
73C
11
D
C4
73C
11
1_555
covale
1.325
none
M
SER
8
D
OG
SER
8
1_555
M
73C
11
D
C1
73C
11
1_555
covale
1.317
one
M
PRO
10
D
C
PRO
10
1_555
M
48V
12
D
N01
48V
12
1_555
Signaling Protein/Inhibitor
staple, SH2, inhibitor, Signaling Protein-Inhibitor complex
L
PHE
9
C
PHE
9
1
L
PRO
10
C
PRO
10
1.67
M
PHE
9
D
PHE
9
1
M
PRO
10
D
PRO
10
0.66
GRB7_HUMAN
UNP
1
415
Q14451
PASGTSLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFS
MDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL
5EEQ
PDB
2
1
5EEQ
415
532
5EEQ
415
532
Q14451
A
1
3
120
415
532
5EEQ
415
532
Q14451
B
1
3
120
1
12
5EEQ
1
12
5EEQ
L
2
1
12
1
12
5EEQ
1
12
5EEQ
M
2
1
12
1
expression tag
GLY
413
5EEQ
A
Q14451
UNP
1
1
expression tag
SER
414
5EEQ
A
Q14451
UNP
2
2
expression tag
GLY
413
5EEQ
B
Q14451
UNP
1
2
expression tag
SER
414
5EEQ
B
Q14451
UNP
2
5
5
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
ARG
490
A
ARG
78
A
SER
494
A
SER
82
A
LYS
476
A
LYS
64
A
GLU
487
A
GLU
75
A
PHE
467
A
PHE
55
A
HIS
473
A
HIS
61
A
LEU
454
A
LEU
42
A
GLU
459
A
GLU
47
A
HIS
525
A
HIS
113
A
CYS
526
A
CYS
114
B
ARG
490
B
ARG
78
B
SER
494
B
SER
82
B
LYS
476
B
LYS
64
B
GLU
487
B
GLU
75
B
PHE
467
B
PHE
55
B
HIS
473
B
HIS
61
B
LEU
454
B
LEU
42
B
GLU
459
B
GLU
47
B
HIS
525
B
HIS
113
B
CYS
526
B
CYS
114
binding site for residue PO4 A 601
A
PO4
601
Software
8
binding site for residue PO4 B 601
B
PO4
601
Software
8
binding site for Ligand residues 48V L 12 through PRO L 10 bound to SER L 1
Software
6
binding site for Ligand 73C L 11 bound to SER L 1
L
73C
11
Software
5
binding site for Ligand 73C L 11 bound to SER L 8
L
73C
11
Software
5
binding site for Ligand 73C M 11 bound to SER M 1
M
73C
11
Software
5
binding site for Ligand residues 48V M 12 through PRO M 10 bound to SER M 1
Software
7
binding site for Ligand 73C M 11 bound to SER M 8
M
73C
11
Software
5
A
ARG
438
A
ARG
26
8
1_555
A
ARG
458
A
ARG
46
8
1_555
A
SER
460
A
SER
48
8
1_555
A
GLN
461
A
GLN
49
8
1_555
A
ARG
462
A
ARG
50
8
1_555
A
HOH
703
G
HOH
8
1_555
A
HOH
724
G
HOH
8
1_555
L
TYR
5
C
TYR
5
8
1_555
B
ARG
438
B
ARG
26
8
1_555
B
ARG
458
B
ARG
46
8
1_555
B
SER
460
B
SER
48
8
1_555
B
GLN
461
B
GLN
49
8
1_555
B
ARG
462
B
ARG
50
8
1_555
B
HOH
704
H
HOH
8
1_555
B
HOH
721
H
HOH
8
1_555
M
TYR
5
D
TYR
5
8
1_555
L
SER
1
C
SER
1
6
1_555
L
PHE
2
C
PHE
2
6
1_555
L
ASN
7
C
ASN
7
6
1_555
L
SER
8
C
SER
8
6
1_555
L
PHE
9
C
PHE
9
6
1_555
L
HOH
105
I
HOH
6
1_555
A
MET
495
A
MET
83
5
1_555
A
ASP
496
A
ASP
84
5
1_555
L
SER
1
C
SER
1
5
1_555
L
PHE
2
C
PHE
2
5
1_555
L
SER
8
C
SER
8
5
1_555
A
MET
495
A
MET
83
5
1_555
A
ASP
496
A
ASP
84
5
1_555
L
SER
1
C
SER
1
5
1_555
L
PHE
2
C
PHE
2
5
1_555
L
SER
8
C
SER
8
5
1_555
B
MET
495
B
MET
83
5
1_555
B
ASP
496
B
ASP
84
5
1_555
M
SER
1
D
SER
1
5
1_555
M
PHE
2
D
PHE
2
5
1_555
M
SER
8
D
SER
8
5
1_555
B
ARG
427
B
ARG
15
7
1_455
B
THR
428
B
THR
16
7
1_455
M
SER
1
D
SER
1
7
1_555
M
PHE
2
D
PHE
2
7
1_555
M
ASN
7
D
ASN
7
7
1_555
M
SER
8
D
SER
8
7
1_555
M
PHE
9
D
PHE
9
7
1_555
B
MET
495
B
MET
83
5
1_555
B
ASP
496
B
ASP
84
5
1_555
M
SER
1
D
SER
1
5
1_555
M
PHE
2
D
PHE
2
5
1_555
M
SER
8
D
SER
8
5
1_555
4
P 1 21 1