0.024405 0.000000 0.000000 0.000000 0.019425 0.000000 0.000000 0.000000 0.008805 0.000000 0.000000 0.000000 Morgunova, E. Yin, Y. Jolma, A. Popov, A. Taipale, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 40.976 51.480 113.575 C10 H16 N3 O7 P 321.224 n 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N C N 8 N O N 9 N N N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C Y 127 N C N 128 N N Y 129 N N Y 130 N C Y 131 N N Y 132 N C N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N O N 148 N P N 149 N O N 150 N O N 151 N O N 152 N C N 153 R C N 154 N O N 155 S C N 156 N O N 157 N C N 158 R C N 159 N N N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N C N 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C Y 193 N N Y 194 N C Y 195 N N Y 196 N C N 197 N C N 198 N O N 199 N N N 200 N C N 201 N N N 202 N N Y 203 N C N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N O N 219 N P N 220 N O N 221 N O N 222 N O N 223 N C N 224 R C N 225 N O N 226 S C N 227 N O N 228 N C N 229 R C N 230 N N N 231 N C N 232 N O N 233 N N N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N O N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 N C N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C Y 308 N C Y 309 N N Y 310 N C Y 311 N C Y 312 N N N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N O N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 S C N 332 N C N 333 N C N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N C N 355 N C N 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C N 376 N C N 377 N C N 378 N C N 379 N N N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C N 401 N C N 402 N S N 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C N 427 N O N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N N N 440 S C N 441 N C N 442 N O N 443 N C N 444 N C N 445 N C N 446 N O N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C N 461 N O N 462 N O N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N N N 471 S C N 472 N C N 473 N O N 474 R C N 475 N O N 476 N C N 477 N O N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N N N 488 S C N 489 N C N 490 N O N 491 N C Y 492 N C Y 493 N C Y 494 N C Y 495 N N Y 496 N C Y 497 N C Y 498 N C Y 499 N C Y 500 N C N 501 N O N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N N N 515 S C N 516 N C N 517 N O N 518 N C Y 519 N C Y 520 N C Y 521 N C Y 522 N C Y 523 N C Y 524 N C N 525 N O N 526 N O N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N N N 539 S C N 540 N C N 541 N O N 542 N C N 543 N C N 544 N C N 545 N O N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N doub N 7 N sing N 8 N sing N 9 N sing N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing Y 131 N sing Y 132 N sing Y 133 N doub N 134 N sing Y 135 N sing Y 136 N sing Y 137 N doub N 138 N sing Y 139 N doub N 140 N sing N 141 N sing Y 142 N sing Y 143 N doub N 144 N sing Y 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing Y 204 N sing Y 205 N sing Y 206 N doub N 207 N sing Y 208 N sing N 209 N sing Y 210 N doub N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing Y 314 N sing Y 315 N doub Y 316 N doub N 317 N sing Y 318 N sing N 319 N sing Y 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing Y 422 N doub Y 423 N sing Y 424 N sing N 425 N sing Y 426 N doub N 427 N sing Y 428 N doub N 429 N sing Y 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N doub N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N doub N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N doub N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N doub N 487 N sing N 488 N sing N 489 N sing N 490 N sing Y 491 N doub Y 492 N sing Y 493 N sing N 494 N sing Y 495 N doub Y 496 N sing Y 497 N sing N 498 N sing Y 499 N sing Y 500 N doub N 501 N sing Y 502 N doub N 503 N sing Y 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N doub N 515 N sing N 516 N sing N 517 N sing N 518 N sing Y 519 N doub Y 520 N sing Y 521 N sing N 522 N sing Y 523 N doub N 524 N sing Y 525 N doub N 526 N sing Y 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N doub N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing US Science SCIEAS 0038 1095-9203 356 10.1126/science.aaj2239 28473536 Impact of cytosine methylation on DNA binding specificities of human transcription factors. 2017 10.2210/pdb5ego/pdb pdb_00005ego 100 1 PIXEL 2015-05-25 PSI PILATUS 6M Si(111) and Si (311) SINGLE WAVELENGTH M x-ray 1 0.984000 1.0 ID29 ESRF 0.984000 SYNCHROTRON ESRF BEAMLINE ID29 6756.834 Homeobox protein Meis1 UNP residues 279-333 1 man polymer 5600.653 DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*G)-3') 1 syn polymer 5458.584 DNA (5'-D(*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*TP*GP*TP*CP*AP*AP*C)-3') 1 syn polymer 7640.061 Homeobox protein Hox-B13 UNP residues 217-277 1 man polymer 18.015 water 20 nat water no no AFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM AFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM A polypeptide(L) no yes (DG)(DT)(DT)(DG)(DA)(DC)(DA)(DG)(DT)(DT)(DT)(DT)(DA)(5CM)(DG)(DA)(DG)(DG) GTTGACAGTTTTACGAGG D polydeoxyribonucleotide no yes (DC)(DC)(DT)(5CM)(DG)(DT)(DA)(DA)(DA)(DA)(DC)(DT)(DG)(DT)(DC)(DA)(DA)(DC) CCTCGTAAAACTGTCAAC E polydeoxyribonucleotide no no RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVK RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVK B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 56 MEIS1 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) Rosetta plasmid Biological sequence pETG20A Human sample 1 61 HOXB13 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) Rosetta plasmid Biological sequence pETG20A 1 2.35 47.72 VAPOR DIFFUSION, SITTING DROP 8 PEG 5000, potassium chloride, magnesium chloride, Tris, PEG 400 8 293 -2.574 1 19 D 20 E 18 -4.574 D_DG20:DC18_E 1 -7.221 -0.126 0.171 -0.332 -17.816 1 20 D 21 E 17 -8.098 D_DT21:DA17_E 2 -13.813 -0.178 0.419 -0.178 -20.556 1 20 D 22 E 16 0.621 D_DT22:DA16_E 3 -14.573 -0.338 0.102 -0.129 -22.104 1 19 D 23 E 15 0.993 D_DG23:DC15_E 4 -10.772 -0.692 -0.722 0.019 1.756 1 20 D 24 E 14 10.135 D_DA24:DT14_E 5 -6.689 0.039 -0.004 -0.082 15.577 1 19 D 25 E 13 -1.392 D_DC25:DG13_E 6 -6.907 0.477 -0.276 -0.269 16.079 1 20 D 26 E 12 -1.450 D_DA26:DT12_E 7 -17.586 0.599 0.255 -0.187 5.745 1 19 D 27 E 11 1.787 D_DG27:DC11_E 8 -13.992 -0.075 0.342 -0.194 -6.229 1 20 D 28 E 10 2.918 D_DT28:DA10_E 9 -12.949 0.232 0.433 -0.080 -7.616 1 20 D 29 E 9 -0.418 D_DT29:DA9_E 10 -16.314 0.143 0.314 -0.033 -20.150 1 20 D 30 E 8 3.721 D_DT30:DA8_E 11 -10.328 0.115 0.143 -0.186 -10.854 1 20 D 31 E 7 2.034 D_DT31:DA7_E 12 -8.310 -0.126 0.066 -0.185 -5.988 1 20 D 32 E 6 5.804 D_DA32:DT6_E 13 -17.134 0.022 0.220 -0.019 1.585 1 19 D 33 E 5 1.899 D_5CM33:DG5_E 14 -19.079 -0.225 0.162 0.155 7.152 1 19 D 34 E 4 10.281 D_DG34:5CM4_E 15 -24.950 -0.146 0.159 0.088 1.153 1 20 D 35 E 3 -3.736 D_DA35:DT3_E 16 -20.999 -0.149 -0.161 0.100 11.028 1 19 D 36 E 2 -3.457 D_DG36:DC2_E 17 -17.530 -0.033 0.578 -0.234 -7.459 1 19 D 37 E 1 1.786 D_DG37:DC1_E 18 -2.044 -0.064 -0.088 -0.019 3.804 32.092 D D 20 21 -8.328 E E 18 17 3.624 -4.588 -0.891 -1.322 DD_DG20DT21:DA17DC18_EE 1 -1.265 2.296 31.746 -1.451 1.353 3.313 31.483 D D 21 22 -7.061 E E 17 16 3.328 -3.812 -0.335 -0.663 DD_DT21DT22:DA16DA17_EE 2 4.098 -7.591 30.994 -0.493 1.400 3.559 41.269 D D 22 23 5.186 E E 16 15 3.421 3.651 0.139 1.754 DD_DT22DG23:DC15DA16_EE 3 1.114 -1.583 41.100 2.069 -0.069 2.686 31.984 D D 23 24 11.226 E E 15 14 2.839 6.088 0.335 0.332 DD_DG23DA24:DT14DC15_EE 4 -7.877 14.525 30.434 -0.352 -1.843 2.675 26.958 D D 24 25 15.788 E E 14 13 2.910 7.268 -0.942 -0.265 DD_DA24DC25:DG13DT14_EE 5 1.614 -3.506 25.928 -2.186 2.379 3.489 41.291 D D 25 26 5.642 E E 13 12 3.385 3.972 -0.697 1.050 DD_DC25DA26:DT12DG13_EE 6 -1.479 2.101 41.082 1.040 0.821 3.256 33.143 D D 26 27 7.160 E E 12 11 3.440 4.070 0.722 -0.785 DD_DA26DG27:DC11DT12_EE 7 -2.615 4.600 32.798 -2.080 -1.718 3.705 37.015 D D 27 28 -6.871 E E 11 10 3.589 -4.351 0.382 -1.101 DD_DG27DT28:DA10DC11_EE 8 1.943 -3.069 36.718 -1.080 -0.309 3.248 34.692 D D 28 29 -1.068 E E 10 9 3.263 -0.637 -0.380 -0.685 DD_DT28DT29:DA9DA10_EE 9 2.015 -3.381 34.630 -1.051 0.944 3.582 42.346 D D 29 30 -3.305 E E 9 8 3.541 -2.382 0.683 0.159 DD_DT29DT30:DA8DA9_EE 10 4.993 -6.930 42.000 0.486 -0.389 2.984 31.849 D D 30 31 17.286 E E 8 7 3.114 9.352 -0.553 0.046 DD_DT30DT31:DA7DA8_EE 11 0.665 -1.230 30.472 -1.544 1.124 3.053 34.120 D D 31 32 12.513 E E 7 6 3.207 7.289 0.673 -0.386 DD_DT31DA32:DT6DA7_EE 12 -0.200 0.343 33.355 -1.777 -1.178 3.078 28.640 D D 32 33 -1.185 E E 6 5 3.117 -0.585 -0.472 -0.717 DD_DA325CM33:DG5DT6_EE 13 2.539 -5.140 28.523 -1.323 1.499 3.337 34.293 D D 33 34 21.811 E E 5 4 3.322 12.569 0.332 0.617 DD_5CM33DG34:5CM4DG5_EE 14 2.168 -3.763 31.900 -1.040 -0.204 3.265 37.125 D D 34 35 4.069 E E 4 3 3.230 2.586 -1.079 -0.352 DD_DG34DA35:DT35CM4_EE 15 -2.611 4.107 36.949 -0.897 1.348 2.574 32.940 D D 35 36 20.561 E E 3 2 2.977 11.372 0.754 -0.168 DD_DA35DG36:DC2DT3_EE 16 -5.687 10.283 30.450 -2.009 -2.187 3.938 36.516 D D 36 37 -10.018 E E 2 1 3.741 -6.212 1.206 -0.554 DD_DG36DG37:DC1DC2_EE 17 6.956 -11.217 35.344 0.141 -0.777 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Data collection Database references Refinement description 1 0 2016-11-09 1 1 2017-05-17 1 2 2024-01-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession N RCSB Y PDBE 2015-10-27 REL REL HOH water 32630 synthetic construct sample 1 18 32630 synthetic construct sample 1 18 4XRM PDB experimental model HOH 1 5 HOH HOH 401 A HOH 16 5 HOH HOH 402 A HOH 20 5 HOH HOH 101 D HOH 9 5 HOH HOH 102 D HOH 15 5 HOH HOH 103 D HOH 4 5 HOH HOH 104 D HOH 12 5 HOH HOH 105 D HOH 2 5 HOH HOH 106 D HOH 19 5 HOH HOH 107 D HOH 7 5 HOH HOH 108 D HOH 3 5 HOH HOH 101 E HOH 13 5 HOH HOH 102 E HOH 18 5 HOH HOH 103 E HOH 6 5 HOH HOH 104 E HOH 11 5 HOH HOH 105 E HOH 8 5 HOH HOH 106 E HOH 10 5 HOH HOH 107 E HOH 5 5 HOH HOH 301 B HOH 17 5 HOH HOH 302 B HOH 14 5 HOH HOH 303 B ALA 278 n 1 ALA 278 A PHE 279 n 2 PHE 279 A PRO 280 n 3 PRO 280 A LYS 281 n 4 LYS 281 A VAL 282 n 5 VAL 282 A ALA 283 n 6 ALA 283 A THR 284 n 7 THR 284 A ASN 285 n 8 ASN 285 A ILE 286 n 9 ILE 286 A MET 287 n 10 MET 287 A ARG 288 n 11 ARG 288 A ALA 289 n 12 ALA 289 A TRP 290 n 13 TRP 290 A LEU 291 n 14 LEU 291 A PHE 292 n 15 PHE 292 A GLN 293 n 16 GLN 293 A HIS 294 n 17 HIS 294 A LEU 295 n 18 LEU 295 A THR 296 n 19 THR 296 A HIS 297 n 20 HIS 297 A PRO 298 n 21 PRO 298 A TYR 299 n 22 TYR 299 A PRO 300 n 23 PRO 300 A SER 301 n 24 SER 301 A GLU 302 n 25 GLU 302 A GLU 303 n 26 GLU 303 A GLN 304 n 27 GLN 304 A LYS 305 n 28 LYS 305 A LYS 306 n 29 LYS 306 A GLN 307 n 30 GLN 307 A LEU 308 n 31 LEU 308 A ALA 309 n 32 ALA 309 A GLN 310 n 33 GLN 310 A ASP 311 n 34 ASP 311 A THR 312 n 35 THR 312 A GLY 313 n 36 GLY 313 A LEU 314 n 37 LEU 314 A THR 315 n 38 THR 315 A ILE 316 n 39 ILE 316 A LEU 317 n 40 LEU 317 A GLN 318 n 41 GLN 318 A VAL 319 n 42 VAL 319 A ASN 320 n 43 ASN 320 A ASN 321 n 44 ASN 321 A TRP 322 n 45 TRP 322 A PHE 323 n 46 PHE 323 A ILE 324 n 47 ILE 324 A ASN 325 n 48 ASN 325 A ALA 326 n 49 ALA 326 A ARG 327 n 50 ARG 327 A ARG 328 n 51 ARG 328 A ARG 329 n 52 ARG 329 A ILE 330 n 53 ILE 330 A VAL 331 n 54 VAL 331 A GLN 332 n 55 GLN 332 A PRO 333 n 56 PRO 333 A MET 334 n 57 MET 334 A DG 20 n 1 DG 20 D DT 21 n 2 DT 21 D DT 22 n 3 DT 22 D DG 23 n 4 DG 23 D DA 24 n 5 DA 24 D DC 25 n 6 DC 25 D DA 26 n 7 DA 26 D DG 27 n 8 DG 27 D DT 28 n 9 DT 28 D DT 29 n 10 DT 29 D DT 30 n 11 DT 30 D DT 31 n 12 DT 31 D DA 32 n 13 DA 32 D 5CM 33 n 14 5CM 33 D DG 34 n 15 DG 34 D DA 35 n 16 DA 35 D DG 36 n 17 DG 36 D DG 37 n 18 DG 37 D DC 1 n 1 DC 1 E DC 2 n 2 DC 2 E DT 3 n 3 DT 3 E 5CM 4 n 4 5CM 4 E DG 5 n 5 DG 5 E DT 6 n 6 DT 6 E DA 7 n 7 DA 7 E DA 8 n 8 DA 8 E DA 9 n 9 DA 9 E DA 10 n 10 DA 10 E DC 11 n 11 DC 11 E DT 12 n 12 DT 12 E DG 13 n 13 DG 13 E DT 14 n 14 DT 14 E DC 15 n 15 DC 15 E DA 16 n 16 DA 16 E DA 17 n 17 DA 17 E DC 18 n 18 DC 18 E ARG 217 n 1 ARG 217 B LYS 218 n 2 LYS 218 B LYS 219 n 3 LYS 219 B ARG 220 n 4 ARG 220 B ILE 221 n 5 ILE 221 B PRO 222 n 6 PRO 222 B TYR 223 n 7 TYR 223 B SER 224 n 8 SER 224 B LYS 225 n 9 LYS 225 B GLY 226 n 10 GLY 226 B GLN 227 n 11 GLN 227 B LEU 228 n 12 LEU 228 B ARG 229 n 13 ARG 229 B GLU 230 n 14 GLU 230 B LEU 231 n 15 LEU 231 B GLU 232 n 16 GLU 232 B ARG 233 n 17 ARG 233 B GLU 234 n 18 GLU 234 B TYR 235 n 19 TYR 235 B ALA 236 n 20 ALA 236 B ALA 237 n 21 ALA 237 B ASN 238 n 22 ASN 238 B LYS 239 n 23 LYS 239 B PHE 240 n 24 PHE 240 B ILE 241 n 25 ILE 241 B THR 242 n 26 THR 242 B LYS 243 n 27 LYS 243 B ASP 244 n 28 ASP 244 B LYS 245 n 29 LYS 245 B ARG 246 n 30 ARG 246 B ARG 247 n 31 ARG 247 B LYS 248 n 32 LYS 248 B ILE 249 n 33 ILE 249 B SER 250 n 34 SER 250 B ALA 251 n 35 ALA 251 B ALA 252 n 36 ALA 252 B THR 253 n 37 THR 253 B SER 254 n 38 SER 254 B LEU 255 n 39 LEU 255 B SER 256 n 40 SER 256 B GLU 257 n 41 GLU 257 B ARG 258 n 42 ARG 258 B GLN 259 n 43 GLN 259 B ILE 260 n 44 ILE 260 B THR 261 n 45 THR 261 B ILE 262 n 46 ILE 262 B TRP 263 n 47 TRP 263 B PHE 264 n 48 PHE 264 B GLN 265 n 49 GLN 265 B ASN 266 n 50 ASN 266 B ARG 267 n 51 ARG 267 B ARG 268 n 52 ARG 268 B VAL 269 n 53 VAL 269 B LYS 270 n 54 LYS 270 B GLU 271 n 55 GLU 271 B LYS 272 n 56 LYS 272 B LYS 273 n 57 LYS 273 B VAL 274 n 58 VAL 274 B LEU 275 n 59 LEU 275 B ALA 276 n 60 ALA 276 B LYS 277 n 61 LYS 277 B VAL 278 n 62 VAL 278 B LYS 279 n 63 LYS 279 B author_and_software_defined_assembly PISA 4 tetrameric 6770 -14 12080 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B OE2 NH1 GLU ARG 232 267 1.76 1 D D OP2 O DG HOH 23 101 1.95 1 2.33 0.30 108.30 110.63 D D D O4' C1' N1 DC DC DC 25 25 25 N 1 3.00 0.30 108.30 111.30 D D D O4' C1' N9 DG DG DG 36 36 36 N 1 2.70 0.30 108.30 111.00 D D D O4' C1' N9 DG DG DG 37 37 37 N 1 3.45 0.30 108.30 111.75 E E E O4' C1' N9 DA DA DA 8 8 8 N 1 2.88 0.30 108.30 111.18 E E E O4' C1' N9 DA DA DA 17 17 17 N 1 B LYS 219 -34.01 135.61 1 B LEU 275 -65.61 83.89 1 B ALA 276 -176.12 74.79 1 B LYS 277 64.94 120.55 164.570 70.1019 49.360 0.2648 0.2279 0.2296 2.5400 38.5440 379 7835 8214 4.6100 97.8300 0.5100 random 1 THROUGHOUT 1.350 MOLECULAR REPLACEMENT 35.4500 0.9000 1.1100 4XRM ML FLAT BULK SOLVENT MODEL 2.5400 38.5440 20 1770 60.53 0 737 1013 156 0.006 1855 1.065 2644 0.040 290 0.005 209 27.895 746 0.4971 0.3921 2.9076 130 2555 98.0000 2.54 40 5EGO 8290 0.048 1 15.5 4.2 98.7 0.761 2.54 2.63 1.6 1 4.2 98.8 data scaling Aimless refinement PHENIX data extraction PDB_EXTRACT 3.15 data reduction XDS phasing PHASER HOXB13-MEIS1 heterodimer bound to methylated DNA 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N A PRO 280 A PRO 3 HELX_P A HIS 294 A HIS 17 1 AA1 15 A SER 301 A SER 24 HELX_P A GLY 313 A GLY 36 1 AA2 13 A THR 315 A THR 38 HELX_P A ILE 330 A ILE 53 1 AA3 16 B SER 224 D SER 8 HELX_P B ALA 236 D ALA 20 1 AA4 13 B THR 242 D THR 26 HELX_P B SER 254 D SER 38 1 AA5 13 B SER 256 D SER 40 HELX_P B LYS 273 D LYS 57 1 AA6 18 covale 1.536 both D DA 32 B O3' DA 13 1_555 D 5CM 33 B P 5CM 14 1_555 covale 1.600 both D 5CM 33 B O3' 5CM 14 1_555 D DG 34 B P DG 15 1_555 covale 1.600 both E DT 3 C O3' DT 3 1_555 E 5CM 4 C P 5CM 4 1_555 covale 1.600 both E 5CM 4 C O3' 5CM 4 1_555 E DG 5 C P DG 5 1_555 hydrog WATSON-CRICK D DG 20 B N1 DG 1 1_555 E DC 18 C N3 DC 18 1_555 hydrog WATSON-CRICK D DG 20 B N2 DG 1 1_555 E DC 18 C O2 DC 18 1_555 hydrog WATSON-CRICK D DG 20 B O6 DG 1 1_555 E DC 18 C N4 DC 18 1_555 hydrog WATSON-CRICK D DT 21 B N3 DT 2 1_555 E DA 17 C N1 DA 17 1_555 hydrog WATSON-CRICK D DT 21 B O4 DT 2 1_555 E DA 17 C N6 DA 17 1_555 hydrog WATSON-CRICK D DT 22 B N3 DT 3 1_555 E DA 16 C N1 DA 16 1_555 hydrog WATSON-CRICK D DT 22 B O4 DT 3 1_555 E DA 16 C N6 DA 16 1_555 hydrog WATSON-CRICK D DG 23 B N1 DG 4 1_555 E DC 15 C N3 DC 15 1_555 hydrog WATSON-CRICK D DG 23 B N2 DG 4 1_555 E DC 15 C O2 DC 15 1_555 hydrog WATSON-CRICK D DG 23 B O6 DG 4 1_555 E DC 15 C N4 DC 15 1_555 hydrog WATSON-CRICK D DA 24 B N1 DA 5 1_555 E DT 14 C N3 DT 14 1_555 hydrog WATSON-CRICK D DA 24 B N6 DA 5 1_555 E DT 14 C O4 DT 14 1_555 hydrog WATSON-CRICK D DC 25 B N3 DC 6 1_555 E DG 13 C N1 DG 13 1_555 hydrog WATSON-CRICK D DC 25 B N4 DC 6 1_555 E DG 13 C O6 DG 13 1_555 hydrog WATSON-CRICK D DC 25 B O2 DC 6 1_555 E DG 13 C N2 DG 13 1_555 hydrog WATSON-CRICK D DA 26 B N1 DA 7 1_555 E DT 12 C N3 DT 12 1_555 hydrog WATSON-CRICK D DA 26 B N6 DA 7 1_555 E DT 12 C O4 DT 12 1_555 hydrog WATSON-CRICK D DG 27 B N1 DG 8 1_555 E DC 11 C N3 DC 11 1_555 hydrog WATSON-CRICK D DG 27 B N2 DG 8 1_555 E DC 11 C O2 DC 11 1_555 hydrog WATSON-CRICK D DG 27 B O6 DG 8 1_555 E DC 11 C N4 DC 11 1_555 hydrog WATSON-CRICK D DT 28 B N3 DT 9 1_555 E DA 10 C N1 DA 10 1_555 hydrog WATSON-CRICK D DT 28 B O4 DT 9 1_555 E DA 10 C N6 DA 10 1_555 hydrog WATSON-CRICK D DT 29 B N3 DT 10 1_555 E DA 9 C N1 DA 9 1_555 hydrog WATSON-CRICK D DT 29 B O4 DT 10 1_555 E DA 9 C N6 DA 9 1_555 hydrog WATSON-CRICK D DT 30 B N3 DT 11 1_555 E DA 8 C N1 DA 8 1_555 hydrog WATSON-CRICK D DT 30 B O4 DT 11 1_555 E DA 8 C N6 DA 8 1_555 hydrog WATSON-CRICK D DT 31 B N3 DT 12 1_555 E DA 7 C N1 DA 7 1_555 hydrog WATSON-CRICK D DT 31 B O4 DT 12 1_555 E DA 7 C N6 DA 7 1_555 hydrog WATSON-CRICK D DA 32 B N1 DA 13 1_555 E DT 6 C N3 DT 6 1_555 hydrog WATSON-CRICK D DA 32 B N6 DA 13 1_555 E DT 6 C O4 DT 6 1_555 hydrog WATSON-CRICK D 5CM 33 B N3 5CM 14 1_555 E DG 5 C N1 DG 5 1_555 hydrog WATSON-CRICK D 5CM 33 B N4 5CM 14 1_555 E DG 5 C O6 DG 5 1_555 hydrog WATSON-CRICK D 5CM 33 B O2 5CM 14 1_555 E DG 5 C N2 DG 5 1_555 hydrog WATSON-CRICK D DG 34 B N1 DG 15 1_555 E 5CM 4 C N3 5CM 4 1_555 hydrog WATSON-CRICK D DG 34 B N2 DG 15 1_555 E 5CM 4 C O2 5CM 4 1_555 hydrog WATSON-CRICK D DG 34 B O6 DG 15 1_555 E 5CM 4 C N4 5CM 4 1_555 hydrog WATSON-CRICK D DA 35 B N1 DA 16 1_555 E DT 3 C N3 DT 3 1_555 hydrog WATSON-CRICK D DA 35 B N6 DA 16 1_555 E DT 3 C O4 DT 3 1_555 hydrog WATSON-CRICK D DG 36 B N1 DG 17 1_555 E DC 2 C N3 DC 2 1_555 hydrog WATSON-CRICK D DG 36 B N2 DG 17 1_555 E DC 2 C O2 DC 2 1_555 hydrog WATSON-CRICK D DG 36 B O6 DG 17 1_555 E DC 2 C N4 DC 2 1_555 hydrog WATSON-CRICK D DG 37 B N1 DG 18 1_555 E DC 1 C N3 DC 1 1_555 hydrog WATSON-CRICK D DG 37 B N2 DG 18 1_555 E DC 1 C O2 DC 1 1_555 hydrog WATSON-CRICK D DG 37 B O6 DG 18 1_555 E DC 1 C N4 DC 1 1_555 TRANSCRIPTION transcription factor, heterodimer, complex, bound to DNA, transcription B ALA 276 D ALA 60 1 B LYS 277 D LYS 61 18.25 MEIS1_HUMAN UNP 1 279 O00470 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 5EGO PDB 2 1 5EGO 5EGO PDB 3 1 5EGO HXB13_HUMAN UNP 4 217 Q92826 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAK 279 333 5EGO 279 333 O00470 A 1 2 56 20 37 5EGO 20 37 5EGO D 2 1 18 1 18 5EGO 1 18 5EGO E 3 1 18 217 277 5EGO 217 277 Q92826 B 4 1 61 1 expression tag ALA 278 5EGO A O00470 UNP 1 1 expression tag MET 334 5EGO A O00470 UNP 57 4 expression tag VAL 278 5EGO B Q92826 UNP 62 4 expression tag LYS 279 5EGO B Q92826 UNP 63 19 P 21 21 21