0.023607
0.000000
0.000000
0.000000
0.018252
0.000000
0.000000
0.000000
0.008929
0.000000
0.000000
0.000000
Singh, K.
Gittis, A.G.
Gitti, R.K.
Ostazesky, S.A.
Su, H.P.
Garboczi, D.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
42.360
54.790
111.990
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H7 N S
77.149
2-AMINO-ETHANETHIOL
2,3-DESHYDROLANTHIONINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C2 H6 O
46.068
ETHANOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C H4 O
32.042
METHANOL
non-polymer
C3 H8 O2
76.094
1,3-PROPANDIOL
non-polymer
C5 H12 O3
120.147
2-(2-METHOXYETHOXY)ETHANOL
PEG 6000
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H8 O
60.095
N-PROPANOL
1-PROPONOL
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Virol.
JOVIAM
0825
1098-5514
90
5020
5030
10.1128/JVI.02933-15
26937025
The Vaccinia Virus H3 Envelope Protein, a Major Target of Neutralizing Antibodies, Exhibits a Glycosyltransferase Fold and Binds UDP-Glucose.
2016
95
1
CCD
2005-07-28
ADSC QUANTUM 315
Si(111) double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
19-ID
APS
0.979
SYNCHROTRON
APS BEAMLINE 19-ID
27486.207
Envelope protein H3
1
man
polymer
77.149
2-AMINO-ETHANETHIOL
1
syn
non-polymer
120.147
2-(2-METHOXYETHOXY)ETHANOL
4
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
60.095
N-PROPANOL
1
syn
non-polymer
76.094
1,3-PROPANDIOL
2
syn
non-polymer
62.068
1,2-ETHANEDIOL
5
syn
non-polymer
46.068
ETHANOL
3
syn
non-polymer
32.042
METHANOL
6
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
91
nat
water
Ag35,Virion envelope protein p35
no
no
AKTPVIVVPVIDRLPSETFPNVHEHINDQKFDDVKDNEVMPEKRNVVVVKDDPDHYKDYAFIQWTGGNIRNDDKYTHFFS
GFCNTMCTEETKRNIARHLALWDSNFFTELENKKVEYVVIVENDNVIEDITFLRPVLKAMHDKKIDILQMREIITGNKVK
TELVMDKNHAIFTYTGGYDVSLSAYIIRVTTALNIVDEIIKSGGLSSGFYFEIARIENEMKINRQILDNAAKYVEHD
AKTPVIVVPVIDRLPSETFPNVHEHINDQKFDDVKDNEVMPEKRNVVVVKDDPDHYKDYAFIQWTGGNIRNDDKYTHFFS
GFCNTMCTEETKRNIARHLALWDSNFFTELENKKVEYVVIVENDNVIEDITFLRPVLKAMHDKKIDILQMREIITGNKVK
TELVMDKNHAIFTYTGGYDVSLSAYIIRVTTALNIVDEIIKSGGLSSGFYFEIARIENEMKINRQILDNAAKYVEHD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
VACV
Western Reserve
sample
1
237
VACWR101, H3L
10254
Vaccinia virus (strain Western Reserve)
562
Escherichia coli
Biological sequence
pNAN
1
2.36
47.97
VAPOR DIFFUSION, HANGING DROP
4.0
100 mM citric acid, 10-20% PEG 6000, 5% 1,3-propanediol and mixture of low molecular mass alcohols
298
repository
Initial release
Database references
1
0
2016-03-16
1
1
2016-05-11
N
RCSB
Y
RCSB
2015-10-30
REL
REL
DHL
2-AMINO-ETHANETHIOL
PG0
2-(2-METHOXYETHOXY)ETHANOL
GOL
GLYCEROL
POL
N-PROPANOL
PDO
1,3-PROPANDIOL
EDO
1,2-ETHANEDIOL
EOH
ETHANOL
MOH
METHANOL
MG
MAGNESIUM ION
HOH
water
AUTHORS HAVE INDICATED THAT THE SEQUENCE IN THE UNPROT ENTRY P07240 IS INCORRECT
DHL
701
2
DHL
DHL
701
A
PG0
702
3
PG0
PG0
702
A
PG0
703
3
PG0
PG0
703
A
PG0
704
3
PG0
PG0
704
A
PG0
705
3
PG0
PG0
705
A
GOL
706
4
GOL
GOL
706
A
GOL
707
4
GOL
GOL
707
A
POL
708
5
POL
POL
708
A
PDO
709
6
PDO
PDO
709
A
PDO
710
6
PDO
PDO
710
A
EDO
711
7
EDO
EDO
711
A
EDO
712
7
EDO
EDO
712
A
EDO
713
7
EDO
EDO
713
A
EDO
714
7
EDO
EDO
714
A
EDO
715
7
EDO
EDO
715
A
EOH
716
8
EOH
EOH
716
A
EOH
717
8
EOH
EOH
717
A
EOH
718
8
EOH
EOH
718
A
MOH
719
9
MOH
MOH
719
A
MOH
720
9
MOH
MOH
720
A
MOH
721
9
MOH
MOH
721
A
MOH
722
9
MOH
MOH
722
A
MOH
723
9
MOH
MOH
723
A
MOH
724
9
MOH
MOH
724
A
MG
726
10
MG
MG
725
A
HOH
559
11
HOH
HOH
801
A
HOH
537
11
HOH
HOH
802
A
HOH
560
11
HOH
HOH
803
A
HOH
558
11
HOH
HOH
804
A
HOH
555
11
HOH
HOH
805
A
HOH
591
11
HOH
HOH
806
A
HOH
586
11
HOH
HOH
807
A
HOH
583
11
HOH
HOH
808
A
HOH
540
11
HOH
HOH
809
A
HOH
511
11
HOH
HOH
810
A
HOH
527
11
HOH
HOH
811
A
HOH
509
11
HOH
HOH
812
A
HOH
571
11
HOH
HOH
813
A
HOH
587
11
HOH
HOH
814
A
HOH
524
11
HOH
HOH
815
A
HOH
514
11
HOH
HOH
816
A
HOH
539
11
HOH
HOH
817
A
HOH
552
11
HOH
HOH
818
A
HOH
562
11
HOH
HOH
819
A
HOH
581
11
HOH
HOH
820
A
HOH
504
11
HOH
HOH
821
A
HOH
515
11
HOH
HOH
822
A
HOH
567
11
HOH
HOH
823
A
HOH
534
11
HOH
HOH
824
A
HOH
561
11
HOH
HOH
825
A
HOH
588
11
HOH
HOH
826
A
HOH
518
11
HOH
HOH
827
A
HOH
506
11
HOH
HOH
828
A
HOH
578
11
HOH
HOH
829
A
HOH
501
11
HOH
HOH
830
A
HOH
564
11
HOH
HOH
831
A
HOH
549
11
HOH
HOH
832
A
HOH
551
11
HOH
HOH
833
A
HOH
523
11
HOH
HOH
834
A
HOH
550
11
HOH
HOH
835
A
HOH
556
11
HOH
HOH
836
A
HOH
545
11
HOH
HOH
837
A
HOH
538
11
HOH
HOH
838
A
HOH
536
11
HOH
HOH
839
A
HOH
563
11
HOH
HOH
840
A
HOH
535
11
HOH
HOH
841
A
HOH
530
11
HOH
HOH
842
A
HOH
532
11
HOH
HOH
843
A
HOH
573
11
HOH
HOH
844
A
HOH
553
11
HOH
HOH
845
A
HOH
502
11
HOH
HOH
846
A
HOH
510
11
HOH
HOH
847
A
HOH
520
11
HOH
HOH
848
A
HOH
508
11
HOH
HOH
849
A
HOH
557
11
HOH
HOH
850
A
HOH
565
11
HOH
HOH
851
A
HOH
533
11
HOH
HOH
852
A
HOH
589
11
HOH
HOH
853
A
HOH
582
11
HOH
HOH
854
A
HOH
505
11
HOH
HOH
855
A
HOH
543
11
HOH
HOH
856
A
HOH
574
11
HOH
HOH
857
A
HOH
517
11
HOH
HOH
858
A
HOH
516
11
HOH
HOH
859
A
HOH
507
11
HOH
HOH
860
A
HOH
547
11
HOH
HOH
861
A
HOH
568
11
HOH
HOH
862
A
HOH
519
11
HOH
HOH
863
A
HOH
575
11
HOH
HOH
864
A
HOH
513
11
HOH
HOH
865
A
HOH
528
11
HOH
HOH
866
A
HOH
503
11
HOH
HOH
867
A
HOH
576
11
HOH
HOH
868
A
HOH
572
11
HOH
HOH
869
A
HOH
521
11
HOH
HOH
870
A
HOH
544
11
HOH
HOH
871
A
HOH
566
11
HOH
HOH
872
A
HOH
579
11
HOH
HOH
873
A
HOH
548
11
HOH
HOH
874
A
HOH
541
11
HOH
HOH
875
A
HOH
525
11
HOH
HOH
876
A
HOH
584
11
HOH
HOH
877
A
HOH
512
11
HOH
HOH
878
A
HOH
577
11
HOH
HOH
879
A
HOH
531
11
HOH
HOH
880
A
HOH
569
11
HOH
HOH
881
A
HOH
580
11
HOH
HOH
882
A
HOH
522
11
HOH
HOH
883
A
HOH
570
11
HOH
HOH
884
A
HOH
554
11
HOH
HOH
885
A
HOH
590
11
HOH
HOH
886
A
HOH
546
11
HOH
HOH
887
A
HOH
542
11
HOH
HOH
888
A
HOH
529
11
HOH
HOH
889
A
HOH
585
11
HOH
HOH
890
A
HOH
526
11
HOH
HOH
891
A
ALA
4
n
1
ALA
4
A
LYS
5
n
2
LYS
5
A
THR
6
n
3
THR
6
A
PRO
7
n
4
PRO
7
A
VAL
8
n
5
VAL
8
A
ILE
9
n
6
ILE
9
A
VAL
10
n
7
VAL
10
A
VAL
11
n
8
VAL
11
A
PRO
12
n
9
PRO
12
A
VAL
13
n
10
VAL
13
A
ILE
14
n
11
ILE
14
A
ASP
15
n
12
ASP
15
A
ARG
16
n
13
ARG
16
A
LEU
17
n
14
LEU
17
A
PRO
18
n
15
PRO
18
A
SER
19
n
16
SER
19
A
GLU
20
n
17
GLU
20
A
THR
21
n
18
THR
21
A
PHE
22
n
19
PHE
22
A
PRO
23
n
20
PRO
23
A
ASN
24
n
21
ASN
24
A
VAL
25
n
22
VAL
25
A
HIS
26
n
23
HIS
26
A
GLU
27
n
24
GLU
27
A
HIS
28
n
25
HIS
28
A
ILE
29
n
26
ILE
29
A
ASN
30
n
27
ASN
30
A
ASP
31
n
28
ASP
31
A
GLN
32
n
29
GLN
32
A
LYS
33
n
30
LYS
33
A
PHE
34
n
31
PHE
34
A
n
32
35
A
n
33
36
A
n
34
37
A
n
35
38
A
n
36
39
A
n
37
40
A
n
38
41
A
n
39
42
A
n
40
43
A
n
41
44
A
n
42
45
A
n
43
46
A
n
44
47
A
n
45
48
A
n
46
49
A
n
47
50
A
n
48
51
A
n
49
52
A
n
50
53
A
n
51
54
A
n
52
55
A
n
53
56
A
n
54
57
A
n
55
58
A
n
56
59
A
LYS
60
n
57
LYS
60
A
ASP
61
n
58
ASP
61
A
TYR
62
n
59
TYR
62
A
ALA
63
n
60
ALA
63
A
PHE
64
n
61
PHE
64
A
ILE
65
n
62
ILE
65
A
GLN
66
n
63
GLN
66
A
TRP
67
n
64
TRP
67
A
THR
68
n
65
THR
68
A
GLY
69
n
66
GLY
69
A
GLY
70
n
67
GLY
70
A
ASN
71
n
68
ASN
71
A
ILE
72
n
69
ILE
72
A
ARG
73
n
70
ARG
73
A
ASN
74
n
71
ASN
74
A
ASP
75
n
72
ASP
75
A
ASP
76
n
73
ASP
76
A
LYS
77
n
74
LYS
77
A
TYR
78
n
75
TYR
78
A
THR
79
n
76
THR
79
A
HIS
80
n
77
HIS
80
A
PHE
81
n
78
PHE
81
A
PHE
82
n
79
PHE
82
A
SER
83
n
80
SER
83
A
GLY
84
n
81
GLY
84
A
PHE
85
n
82
PHE
85
A
CYS
86
n
83
CYS
86
A
ASN
87
n
84
ASN
87
A
THR
88
n
85
THR
88
A
MET
89
n
86
MET
89
A
CYS
90
n
87
CYS
90
A
THR
91
n
88
THR
91
A
GLU
92
n
89
GLU
92
A
GLU
93
n
90
GLU
93
A
THR
94
n
91
THR
94
A
LYS
95
n
92
LYS
95
A
ARG
96
n
93
ARG
96
A
ASN
97
n
94
ASN
97
A
ILE
98
n
95
ILE
98
A
ALA
99
n
96
ALA
99
A
ARG
100
n
97
ARG
100
A
HIS
101
n
98
HIS
101
A
LEU
102
n
99
LEU
102
A
ALA
103
n
100
ALA
103
A
LEU
104
n
101
LEU
104
A
TRP
105
n
102
TRP
105
A
ASP
106
n
103
ASP
106
A
SER
107
n
104
SER
107
A
ASN
108
n
105
ASN
108
A
PHE
109
n
106
PHE
109
A
PHE
110
n
107
PHE
110
A
THR
111
n
108
THR
111
A
GLU
112
n
109
GLU
112
A
LEU
113
n
110
LEU
113
A
GLU
114
n
111
GLU
114
A
ASN
115
n
112
ASN
115
A
LYS
116
n
113
LYS
116
A
LYS
117
n
114
LYS
117
A
VAL
118
n
115
VAL
118
A
GLU
119
n
116
GLU
119
A
TYR
120
n
117
TYR
120
A
VAL
121
n
118
VAL
121
A
VAL
122
n
119
VAL
122
A
ILE
123
n
120
ILE
123
A
VAL
124
n
121
VAL
124
A
GLU
125
n
122
GLU
125
A
ASN
126
n
123
ASN
126
A
ASP
127
n
124
ASP
127
A
ASN
128
n
125
ASN
128
A
VAL
129
n
126
VAL
129
A
ILE
130
n
127
ILE
130
A
GLU
131
n
128
GLU
131
A
ASP
132
n
129
ASP
132
A
ILE
133
n
130
ILE
133
A
THR
134
n
131
THR
134
A
PHE
135
n
132
PHE
135
A
LEU
136
n
133
LEU
136
A
ARG
137
n
134
ARG
137
A
PRO
138
n
135
PRO
138
A
VAL
139
n
136
VAL
139
A
LEU
140
n
137
LEU
140
A
LYS
141
n
138
LYS
141
A
ALA
142
n
139
ALA
142
A
MET
143
n
140
MET
143
A
HIS
144
n
141
HIS
144
A
ASP
145
n
142
ASP
145
A
LYS
146
n
143
LYS
146
A
LYS
147
n
144
LYS
147
A
ILE
148
n
145
ILE
148
A
ASP
149
n
146
ASP
149
A
ILE
150
n
147
ILE
150
A
LEU
151
n
148
LEU
151
A
GLN
152
n
149
GLN
152
A
MET
153
n
150
MET
153
A
ARG
154
n
151
ARG
154
A
GLU
155
n
152
GLU
155
A
ILE
156
n
153
ILE
156
A
ILE
157
n
154
ILE
157
A
THR
158
n
155
THR
158
A
GLY
159
n
156
GLY
159
A
ASN
160
n
157
ASN
160
A
LYS
161
n
158
LYS
161
A
VAL
162
n
159
VAL
162
A
LYS
163
n
160
LYS
163
A
THR
164
n
161
THR
164
A
GLU
165
n
162
GLU
165
A
LEU
166
n
163
LEU
166
A
VAL
167
n
164
VAL
167
A
MET
168
n
165
MET
168
A
ASP
169
n
166
ASP
169
A
LYS
170
n
167
LYS
170
A
ASN
171
n
168
ASN
171
A
HIS
172
n
169
HIS
172
A
ALA
173
n
170
ALA
173
A
ILE
174
n
171
ILE
174
A
PHE
175
n
172
PHE
175
A
THR
176
n
173
THR
176
A
TYR
177
n
174
TYR
177
A
THR
178
n
175
THR
178
A
GLY
179
n
176
GLY
179
A
GLY
180
n
177
GLY
180
A
TYR
181
n
178
TYR
181
A
ASP
182
n
179
ASP
182
A
VAL
183
n
180
VAL
183
A
SER
184
n
181
SER
184
A
LEU
185
n
182
LEU
185
A
SER
186
n
183
SER
186
A
ALA
187
n
184
ALA
187
A
TYR
188
n
185
TYR
188
A
ILE
189
n
186
ILE
189
A
ILE
190
n
187
ILE
190
A
ARG
191
n
188
ARG
191
A
VAL
192
n
189
VAL
192
A
THR
193
n
190
THR
193
A
THR
194
n
191
THR
194
A
ALA
195
n
192
ALA
195
A
LEU
196
n
193
LEU
196
A
ASN
197
n
194
ASN
197
A
ILE
198
n
195
ILE
198
A
VAL
199
n
196
VAL
199
A
ASP
200
n
197
ASP
200
A
GLU
201
n
198
GLU
201
A
ILE
202
n
199
ILE
202
A
ILE
203
n
200
ILE
203
A
LYS
204
n
201
LYS
204
A
SER
205
n
202
SER
205
A
GLY
206
n
203
GLY
206
A
GLY
207
n
204
GLY
207
A
LEU
208
n
205
LEU
208
A
SER
209
n
206
SER
209
A
SER
210
n
207
SER
210
A
GLY
211
n
208
GLY
211
A
PHE
212
n
209
PHE
212
A
TYR
213
n
210
TYR
213
A
PHE
214
n
211
PHE
214
A
GLU
215
n
212
GLU
215
A
ILE
216
n
213
ILE
216
A
ALA
217
n
214
ALA
217
A
ARG
218
n
215
ARG
218
A
ILE
219
n
216
ILE
219
A
GLU
220
n
217
GLU
220
A
ASN
221
n
218
ASN
221
A
GLU
222
n
219
GLU
222
A
MET
223
n
220
MET
223
A
LYS
224
n
221
LYS
224
A
ILE
225
n
222
ILE
225
A
ASN
226
n
223
ASN
226
A
ARG
227
n
224
ARG
227
A
GLN
228
n
225
GLN
228
A
ILE
229
n
226
ILE
229
A
LEU
230
n
227
LEU
230
A
ASP
231
n
228
ASP
231
A
ASN
232
n
229
ASN
232
A
ALA
233
n
230
ALA
233
A
ALA
234
n
231
ALA
234
A
LYS
235
n
232
LYS
235
A
TYR
236
n
233
TYR
236
A
VAL
237
n
234
VAL
237
A
GLU
238
n
235
GLU
238
A
HIS
239
n
236
HIS
239
A
ASP
240
n
237
ASP
240
A
author_and_software_defined_assembly
PISA
1
monomeric
A
GLU
125
A
OE1
GLU
122
1_555
A
MG
725
Z
MG
MG
1_555
A
ASP
127
A
OD1
ASP
124
1_555
102.0
A
GLU
125
A
OE1
GLU
122
1_555
A
MG
725
Z
MG
MG
1_555
A
SER
186
A
OG
SER
183
1_555
108.5
A
ASP
127
A
OD1
ASP
124
1_555
A
MG
725
Z
MG
MG
1_555
A
SER
186
A
OG
SER
183
1_555
114.0
A
GLU
125
A
OE1
GLU
122
1_555
A
MG
725
Z
MG
MG
1_555
A
PDO
710
K
O1
PDO
1_555
95.0
A
ASP
127
A
OD1
ASP
124
1_555
A
MG
725
Z
MG
MG
1_555
A
PDO
710
K
O1
PDO
1_555
136.8
A
SER
186
A
OG
SER
183
1_555
A
MG
725
Z
MG
MG
1_555
A
PDO
710
K
O1
PDO
1_555
97.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
30
A
N
ASN
27
A
O
GLN
66
A
O
GLN
63
A
O
ILE
65
A
O
ILE
62
A
N
VAL
10
A
N
VAL
7
A
N
ILE
9
A
N
ILE
6
A
O
VAL
122
A
O
VAL
119
A
N
ILE
123
A
N
ILE
120
A
O
TYR
188
A
O
TYR
185
A
O
ILE
189
A
O
ILE
186
A
N
LEU
151
A
N
LEU
148
A
N
GLN
152
A
N
GLN
149
A
O
GLN
228
A
O
GLN
225
A
O
ILE
229
A
O
ILE
226
A
N
TYR
177
A
N
TYR
174
A
O
ILE
174
A
O
ILE
171
A
N
LEU
166
A
N
LEU
163
A
N
VAL
129
A
N
VAL
126
A
O
GLU
238
A
O
GLU
235
1
A
CG
HIS
28
A
CG
HIS
25
1
Y
1
A
ND1
HIS
28
A
ND1
HIS
25
1
Y
1
A
CD2
HIS
28
A
CD2
HIS
25
1
Y
1
A
CE1
HIS
28
A
CE1
HIS
25
1
Y
1
A
NE2
HIS
28
A
NE2
HIS
25
1
Y
1
A
CG
PHE
34
A
CG
PHE
31
1
Y
1
A
CD1
PHE
34
A
CD1
PHE
31
1
Y
1
A
CD2
PHE
34
A
CD2
PHE
31
1
Y
1
A
CE1
PHE
34
A
CE1
PHE
31
1
Y
1
A
CE2
PHE
34
A
CE2
PHE
31
1
Y
1
A
CZ
PHE
34
A
CZ
PHE
31
1
Y
1
A
CG
LYS
60
A
CG
LYS
57
1
Y
1
A
CD
LYS
60
A
CD
LYS
57
1
Y
1
A
CE
LYS
60
A
CE
LYS
57
1
Y
1
A
NZ
LYS
60
A
NZ
LYS
57
1
Y
1
A
CB
ILE
72
A
CB
ILE
69
1
Y
1
A
CG1
ILE
72
A
CG1
ILE
69
1
Y
1
A
CG2
ILE
72
A
CG2
ILE
69
1
Y
1
A
CD1
ILE
72
A
CD1
ILE
69
1
Y
1
A
CB
ARG
73
A
CB
ARG
70
1
Y
1
A
CG
ARG
73
A
CG
ARG
70
1
Y
1
A
CD
ARG
73
A
CD
ARG
70
1
Y
1
A
NE
ARG
73
A
NE
ARG
70
1
Y
1
A
CZ
ARG
73
A
CZ
ARG
70
1
Y
1
A
NH1
ARG
73
A
NH1
ARG
70
1
Y
1
A
NH2
ARG
73
A
NH2
ARG
70
1
Y
1
A
CB
ASN
74
A
CB
ASN
71
1
Y
1
A
CG
ASN
74
A
CG
ASN
71
1
Y
1
A
OD1
ASN
74
A
OD1
ASN
71
1
Y
1
A
ND2
ASN
74
A
ND2
ASN
71
1
Y
1
A
CB
ASP
75
A
CB
ASP
72
1
Y
1
A
CG
ASP
75
A
CG
ASP
72
1
Y
1
A
OD1
ASP
75
A
OD1
ASP
72
1
Y
1
A
OD2
ASP
75
A
OD2
ASP
72
1
Y
1
A
CB
ASP
76
A
CB
ASP
73
1
Y
1
A
CG
ASP
76
A
CG
ASP
73
1
Y
1
A
OD1
ASP
76
A
OD1
ASP
73
1
Y
1
A
OD2
ASP
76
A
OD2
ASP
73
1
Y
1
A
CB
LYS
77
A
CB
LYS
74
1
Y
1
A
CG
LYS
77
A
CG
LYS
74
1
Y
1
A
CD
LYS
77
A
CD
LYS
74
1
Y
1
A
CE
LYS
77
A
CE
LYS
74
1
Y
1
A
NZ
LYS
77
A
NZ
LYS
74
1
Y
1
A
CG
PHE
85
A
CG
PHE
82
1
Y
1
A
CD1
PHE
85
A
CD1
PHE
82
1
Y
1
A
CD2
PHE
85
A
CD2
PHE
82
1
Y
1
A
CE1
PHE
85
A
CE1
PHE
82
1
Y
1
A
CE2
PHE
85
A
CE2
PHE
82
1
Y
1
A
CZ
PHE
85
A
CZ
PHE
82
1
Y
1
A
CB
CYS
86
A
CB
CYS
83
1
Y
1
A
SG
CYS
86
A
SG
CYS
83
1
Y
1
A
CB
ASN
87
A
CB
ASN
84
1
Y
1
A
CG
ASN
87
A
CG
ASN
84
1
Y
1
A
OD1
ASN
87
A
OD1
ASN
84
1
Y
1
A
ND2
ASN
87
A
ND2
ASN
84
1
Y
1
A
OG1
THR
88
A
OG1
THR
85
1
Y
1
A
CG2
THR
88
A
CG2
THR
85
1
Y
1
A
CG
GLU
92
A
CG
GLU
89
1
Y
1
A
CD
GLU
92
A
CD
GLU
89
1
Y
1
A
OE1
GLU
92
A
OE1
GLU
89
1
Y
1
A
OE2
GLU
92
A
OE2
GLU
89
1
Y
1
A
CG
GLU
93
A
CG
GLU
90
1
Y
1
A
CD
GLU
93
A
CD
GLU
90
1
Y
1
A
OE1
GLU
93
A
OE1
GLU
90
1
Y
1
A
OE2
GLU
93
A
OE2
GLU
90
1
Y
1
A
CG
ARG
96
A
CG
ARG
93
1
Y
1
A
CD
ARG
96
A
CD
ARG
93
1
Y
1
A
NE
ARG
96
A
NE
ARG
93
1
Y
1
A
CZ
ARG
96
A
CZ
ARG
93
1
Y
1
A
NH1
ARG
96
A
NH1
ARG
93
1
Y
1
A
NH2
ARG
96
A
NH2
ARG
93
1
Y
1
A
CG
LYS
116
A
CG
LYS
113
1
Y
1
A
CD
LYS
116
A
CD
LYS
113
1
Y
1
A
CE
LYS
116
A
CE
LYS
113
1
Y
1
A
NZ
LYS
116
A
NZ
LYS
113
1
Y
1
A
CD
LYS
141
A
CD
LYS
138
1
Y
1
A
CE
LYS
141
A
CE
LYS
138
1
Y
1
A
NZ
LYS
141
A
NZ
LYS
138
1
Y
1
A
CG
GLU
238
A
CG
GLU
235
1
Y
1
A
CD
GLU
238
A
CD
GLU
235
1
Y
1
A
OE1
GLU
238
A
OE1
GLU
235
1
Y
1
A
OE2
GLU
238
A
OE2
GLU
235
1
Y
1
A
CG
ASP
240
A
CG
ASP
237
1
Y
1
A
OD1
ASP
240
A
OD1
ASP
237
1
Y
1
A
OD2
ASP
240
A
OD2
ASP
237
1
Y
1
A
ASP
35
A
ASP
32
1
Y
1
A
ASP
36
A
ASP
33
1
Y
1
A
VAL
37
A
VAL
34
1
Y
1
A
LYS
38
A
LYS
35
1
Y
1
A
ASP
39
A
ASP
36
1
Y
1
A
ASN
40
A
ASN
37
1
Y
1
A
GLU
41
A
GLU
38
1
Y
1
A
VAL
42
A
VAL
39
1
Y
1
A
MET
43
A
MET
40
1
Y
1
A
PRO
44
A
PRO
41
1
Y
1
A
GLU
45
A
GLU
42
1
Y
1
A
LYS
46
A
LYS
43
1
Y
1
A
ARG
47
A
ARG
44
1
Y
1
A
ASN
48
A
ASN
45
1
Y
1
A
VAL
49
A
VAL
46
1
Y
1
A
VAL
50
A
VAL
47
1
Y
1
A
VAL
51
A
VAL
48
1
Y
1
A
VAL
52
A
VAL
49
1
Y
1
A
LYS
53
A
LYS
50
1
Y
1
A
ASP
54
A
ASP
51
1
Y
1
A
ASP
55
A
ASP
52
1
Y
1
A
PRO
56
A
PRO
53
1
Y
1
A
ASP
57
A
ASP
54
1
Y
1
A
HIS
58
A
HIS
55
1
Y
1
A
TYR
59
A
TYR
56
1
Y
1
A
A
C5
C1
PG0
POL
704
708
1.68
1
A
GLU
27
-144.89
-155.75
1
A
GLN
32
-172.65
140.85
1
A
ILE
72
-39.96
-90.64
1
A
ASP
75
-153.62
44.96
1
A
PHE
85
-93.61
-104.95
1
A
CYS
86
68.19
-134.03
1
A
ASN
87
-72.48
-132.06
1
A
LYS
170
38.85
-109.56
1
A
ASP
182
-142.40
31.82
1
A
SER
209
-125.37
-64.00
97.010
33.3324
11.640
0.2400
0.1973
0.2007
1.9000
49.2160
1668
19545
21213
7.8600
99.8100
0.2500
1
THROUGHOUT
1.350
MAD
23.2600
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
1.9000
49.2160
91
1840
41.10
38.37
105
0
1644
212
0.008
1765
1.089
2340
0.040
264
0.005
291
12.369
611
0.3116
0.2871
1.9560
156
1590
1746
12
100.0000
0.3277
0.2608
2.0191
153
1585
1738
12
100.0000
0.2954
0.2223
2.0913
125
1602
1727
12
100.0000
0.2554
0.2151
2.1750
127
1601
1728
12
100.0000
0.2285
0.2015
2.2740
149
1591
1740
12
100.0000
0.2229
0.1940
2.3939
122
1654
1776
12
100.0000
0.2492
0.1965
2.5439
115
1624
1739
12
100.0000
0.2292
0.2099
2.7403
139
1636
1775
12
100.0000
0.2406
0.2018
3.0160
139
1632
1771
12
100.0000
0.2678
0.1870
3.4524
149
1621
1770
12
100.0000
0.2012
0.1655
4.3492
143
1660
1803
12
100.0000
0.2274
0.1984
49.2321
151
1749
1900
12
99.0000
1.90
49.22
5EJ0
21213
0
-3.0
0.059
1
18.54
4.79
99.81
1
refinement
PHENIX
data extraction
PDB_EXTRACT
3.15
data reduction
XDS
data scaling
XDS
phasing
CNS
Envelope protein H3
The vaccinia virus H3 envelope protein, a major target of neutralizing antibodies, exhibits a glycosyltransferase fold and binds UDP-Glucose
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
7
N
N
7
N
N
7
N
N
7
N
N
7
N
N
8
N
N
8
N
N
8
N
N
9
N
N
9
N
N
9
N
N
9
N
N
9
N
N
9
N
N
10
N
N
11
N
N
A
LEU
17
A
LEU
14
HELX_P
A
THR
21
A
THR
18
5
AA1
5
A
TYR
78
A
TYR
75
HELX_P
A
PHE
82
A
PHE
79
5
AA2
5
A
THR
91
A
THR
88
HELX_P
A
ASP
106
A
ASP
103
1
AA3
16
A
SER
107
A
SER
104
HELX_P
A
LYS
116
A
LYS
113
1
AA4
10
A
ASP
132
A
ASP
129
HELX_P
A
THR
134
A
THR
131
5
AA5
3
A
PHE
135
A
PHE
132
HELX_P
A
LYS
146
A
LYS
143
1
AA6
12
A
VAL
192
A
VAL
189
HELX_P
A
SER
205
A
SER
202
1
AA7
14
A
GLY
211
A
GLY
208
HELX_P
A
MET
223
A
MET
220
1
AA8
13
A
ASN
232
A
ASN
229
HELX_P
A
TYR
236
A
TYR
233
5
AA9
5
disulf
2.257
A
CYS
90
A
SG
CYS
87
1_555
A
DHL
701
B
SG
DHL
1_555
metalc
2.623
A
GLU
125
A
OE1
GLU
122
1_555
A
MG
725
Z
MG
MG
1_555
metalc
2.651
A
ASP
127
A
OD1
ASP
124
1_555
A
MG
725
Z
MG
MG
1_555
metalc
2.586
A
SER
186
A
OG
SER
183
1_555
A
MG
725
Z
MG
MG
1_555
metalc
2.923
A
PDO
710
K
O1
PDO
1_555
A
MG
725
Z
MG
MG
1_555
VIRAL PROTEIN
H3, vaccinia virus, poxvirus, glycosyl transferase, VIRAL PROTEIN
H3_VACCW
UNP
1
4
P07240
AKTPVIVVPVIDRLPSETFPNVHEHINDQKFDDVKDNEVMPEKRNVVVVKDDPDHYKDYAFIQWTGGNIRNDDKYTHFFS
GFCNTMCTEETKRNIARHLALWDSNFFTELENKKVEYVVIVENDNVIEDITFLRPVLKAMHDKKIDILQMREIITGNKVK
TELVMDKNHAIFTYTGGYDVSLSAYIIRVTTELNIVDEIIKSGGLSSGFYFEIARIENEMKINRQILDNAAKYVEHD
4
240
5EJ0
4
240
P07240
A
1
1
237
1
GLU
see remark 999
ALA
195
5EJ0
A
P07240
UNP
195
192
9
2
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ASN
30
A
ASN
27
A
GLN
32
A
GLN
29
A
TYR
62
A
TYR
59
A
TRP
67
A
TRP
64
A
THR
6
A
THR
3
A
VAL
11
A
VAL
8
A
TYR
120
A
TYR
117
A
GLU
125
A
GLU
122
A
ALA
187
A
ALA
184
A
ARG
191
A
ARG
188
A
ILE
150
A
ILE
147
A
GLN
152
A
GLN
149
A
ARG
227
A
ARG
224
A
LEU
230
A
LEU
227
A
HIS
172
A
HIS
169
A
THR
178
A
THR
175
A
THR
164
A
THR
161
A
ASP
169
A
ASP
166
A
ASN
128
A
ASN
125
A
VAL
129
A
VAL
126
A
GLU
238
A
GLU
235
A
HIS
239
A
HIS
236
binding site for residue DHL A 701
A
DHL
701
Software
7
binding site for residue PG0 A 702
A
PG0
702
Software
6
binding site for residue PG0 A 703
A
PG0
703
Software
6
binding site for residue PG0 A 704
A
PG0
704
Software
8
binding site for residue PG0 A 705
A
PG0
705
Software
9
binding site for residue GOL A 706
A
GOL
706
Software
7
binding site for residue GOL A 707
A
GOL
707
Software
8
binding site for residue POL A 708
A
POL
708
Software
5
binding site for residue PDO A 709
A
PDO
709
Software
3
binding site for residue PDO A 710
A
PDO
710
Software
8
binding site for residue EDO A 711
A
EDO
711
Software
7
binding site for residue EDO A 712
A
EDO
712
Software
5
binding site for residue EDO A 713
A
EDO
713
Software
3
binding site for residue EDO A 714
A
EDO
714
Software
8
binding site for residue EDO A 715
A
EDO
715
Software
2
binding site for residue EOH A 716
A
EOH
716
Software
6
binding site for residue EOH A 717
A
EOH
717
Software
5
binding site for residue EOH A 718
A
EOH
718
Software
8
binding site for residue MG A 725
A
MG
725
Software
5
A
SER
83
A
SER
80
7
1_555
A
GLY
84
A
GLY
81
7
1_555
A
PHE
85
A
PHE
82
7
1_555
A
MET
89
A
MET
86
7
1_555
A
CYS
90
A
CYS
87
7
1_555
A
LYS
95
A
LYS
92
7
1_555
A
SER
209
A
SER
206
7
1_555
A
GLY
211
A
GLY
208
6
1_555
A
PHE
212
A
PHE
209
6
1_555
A
TYR
213
A
TYR
210
6
1_555
A
PHE
214
A
PHE
211
6
1_555
A
HOH
802
AA
HOH
6
1_555
A
HOH
886
AA
HOH
6
1_555
A
PRO
12
A
PRO
9
6
1_555
A
ARG
16
A
ARG
13
6
1_555
A
GLN
66
A
GLN
63
6
1_555
A
THR
68
A
THR
65
6
1_555
A
ASN
71
A
ASN
68
6
1_555
A
HOH
817
AA
HOH
6
1_555
A
GLU
201
A
GLU
198
8
4_466
A
LYS
204
A
LYS
201
8
4_466
A
GLY
211
A
GLY
208
8
1_555
A
PHE
214
A
PHE
211
8
1_555
A
MET
223
A
MET
220
8
4_466
A
POL
708
I
POL
8
1_555
A
HOH
802
AA
HOH
8
1_555
A
HOH
853
AA
HOH
8
1_555
A
ASP
149
A
ASP
146
9
1_555
A
THR
194
A
THR
191
9
1_555
A
SER
210
A
SER
207
9
4_566
A
MET
223
A
MET
220
9
1_555
A
LYS
224
A
LYS
221
9
1_555
A
ILE
225
A
ILE
222
9
1_555
A
GOL
706
G
GOL
9
1_555
A
POL
708
I
POL
9
4_566
A
HOH
838
AA
HOH
9
4_566
A
CYS
86
A
CYS
83
7
4_566
A
ARG
191
A
ARG
188
7
1_555
A
THR
193
A
THR
190
7
1_555
A
SER
209
A
SER
206
7
4_566
A
SER
210
A
SER
207
7
4_566
A
PG0
705
F
PG0
7
1_555
A
HOH
866
AA
HOH
7
1_555
A
TRP
105
A
TRP
102
8
1_555
A
ILE
150
A
ILE
147
8
1_555
A
GLN
152
A
GLN
149
8
1_555
A
SER
184
A
SER
181
8
1_555
A
LEU
185
A
LEU
182
8
1_555
A
TYR
188
A
TYR
185
8
1_555
A
GLU
220
A
GLU
217
8
1_555
A
ARG
227
A
ARG
224
8
1_555
A
SER
210
A
SER
207
5
1_555
A
MET
223
A
MET
220
5
4_466
A
PG0
704
E
PG0
5
1_555
A
PG0
705
F
PG0
5
4_466
A
HOH
838
AA
HOH
5
1_555
A
ASN
221
A
ASN
218
3
1_555
A
GLU
222
A
GLU
219
3
1_555
A
LYS
224
A
LYS
221
3
1_555
A
ASN
97
A
ASN
94
8
1_555
A
GLU
125
A
GLU
122
8
1_555
A
ARG
154
A
ARG
151
8
1_555
A
SER
186
A
SER
183
8
1_555
A
HIS
239
A
HIS
236
8
1_555
A
MG
725
Z
MG
8
1_555
A
HOH
832
AA
HOH
8
1_555
A
HOH
845
AA
HOH
8
1_555
A
ILE
157
A
ILE
154
7
1_555
A
GLY
180
A
GLY
177
7
1_555
A
TYR
181
A
TYR
178
7
1_555
A
ILE
203
A
ILE
200
7
4_466
A
LYS
204
A
LYS
201
7
4_466
A
HOH
831
AA
HOH
7
1_555
A
HOH
862
AA
HOH
7
1_555
A
ASN
24
A
ASN
21
5
1_555
A
GLU
131
A
GLU
128
5
1_555
A
ASP
132
A
ASP
129
5
1_555
A
HOH
812
AA
HOH
5
1_555
A
HOH
824
AA
HOH
5
1_555
A
GLY
84
A
GLY
81
3
1_555
A
GLY
206
A
GLY
203
3
1_555
A
HOH
801
AA
HOH
3
1_555
A
TYR
181
A
TYR
178
8
1_555
A
ASP
182
A
ASP
179
8
1_555
A
VAL
183
A
VAL
180
8
1_555
A
LYS
204
A
LYS
201
8
4_466
A
TYR
213
A
TYR
210
8
1_555
A
PHE
214
A
PHE
211
8
1_555
A
HOH
802
AA
HOH
8
1_555
A
HOH
867
AA
HOH
8
1_555
A
ASP
61
A
ASP
58
2
1_555
A
HOH
818
AA
HOH
2
1_555
A
THR
178
A
THR
175
6
1_555
A
ILE
225
A
ILE
222
6
1_555
A
ASN
226
A
ASN
223
6
1_555
A
ARG
227
A
ARG
224
6
1_555
A
EOH
718
S
EOH
6
1_555
A
HOH
803
AA
HOH
6
1_555
A
LYS
33
A
LYS
30
5
1_555
A
THR
68
A
THR
65
5
1_555
A
GLY
69
A
GLY
66
5
1_555
A
ASN
74
A
ASN
71
5
1_555
A
TYR
78
A
TYR
75
5
1_555
A
GLY
180
A
GLY
177
8
1_555
A
ALA
217
A
ALA
214
8
1_555
A
GLU
220
A
GLU
217
8
1_555
A
ASN
221
A
ASN
218
8
1_555
A
ARG
227
A
ARG
224
8
1_555
A
EOH
716
Q
EOH
8
1_555
A
HOH
803
AA
HOH
8
1_555
A
HOH
839
AA
HOH
8
1_555
A
GLU
125
A
GLU
122
5
1_555
A
ASP
127
A
ASP
124
5
1_555
A
SER
186
A
SER
183
5
1_555
A
HIS
239
A
HIS
236
5
1_555
A
PDO
710
K
PDO
5
1_555
19
P 21 21 21