0.016876 0.000000 0.000000 0.000000 0.016876 0.000000 0.000000 0.000000 0.019041 0.00000 0.00000 0.00000 Spencer, R.K. Hochbaum, A.I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 59.256 59.256 52.519 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N O N 29 N N N 30 N O N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N C N 48 N O N 49 N O N 50 N O N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N O N 61 N H N 62 N H N 63 N N N 64 S C N 65 N C N 66 N O N 67 S C N 68 N C N 69 N C N 70 N C N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N N N 86 S C N 87 N C N 88 N O N 89 N C N 90 N C N 91 N C N 92 N C N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 S C N 109 N C N 110 N O N 111 N C N 112 N C N 113 N C N 114 N C N 115 N N N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 N H N 134 N H N 135 N N N 136 S C N 137 N C N 138 N O N 139 N C Y 140 N C Y 141 N C Y 142 N C Y 143 N C Y 144 N C Y 145 N C N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 N C Y 163 N C Y 164 N C Y 165 N C Y 166 N N Y 167 N C Y 168 N C Y 169 N C Y 170 N C Y 171 N C N 172 N O N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N doub N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing Y 137 N doub Y 138 N sing Y 139 N sing N 140 N sing Y 141 N doub N 142 N sing Y 143 N doub N 144 N sing Y 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing Y 160 N doub Y 161 N sing Y 162 N sing N 163 N sing Y 164 N doub Y 165 N sing Y 166 N sing N 167 N sing Y 168 N sing Y 169 N doub N 170 N sing Y 171 N doub N 172 N sing Y 173 N sing N 174 N sing N 175 N sing N 176 N sing US Biochemistry BICHAW 0033 0006-2960 55 3214 3223 10.1021/acs.biochem.6b00201 27192036 X-ray Crystallographic Structure and Solution Behavior of an Antiparallel Coiled-Coil Hexamer Formed by de Novo Peptides. 2016 10.2210/pdb5eon/pdb pdb_00005eon 100 1 CCD 2015-10-21 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.977 1.0 5.0.1 ALS 0.977 SYNCHROTRON ALS BEAMLINE 5.0.1 3351.995 ACC-Hex 3 syn polymer 18.015 water 101 nat water no yes (ACE)ELKAIAQEFKAIAKEFKAIAWEFKAIAQK(NH2) XELKAIAQEFKAIAKEFKAIAWEFKAIAQKX A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 2.29 46.33 VAPOR DIFFUSION, HANGING DROP 7.3 0.1 M Na formate, pH 7.3, PEG 3350 29% 298 atom_site chem_comp citation database_2 entity entity_poly entity_poly_seq pdbx_entity_src_syn pdbx_poly_seq_scheme pdbx_struct_oper_list pdbx_validate_rmsd_angle pdbx_validate_rmsd_bond struct_conf struct_conn struct_ref_seq chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Database references Database references Atomic model Data collection Database references Derived calculations Non-polymer description Polymer sequence Source and taxonomy Structure summary Data collection Refinement description 1 0 2016-05-25 1 1 2016-06-01 1 2 2016-06-22 2 0 2022-12-14 2 1 2023-10-25 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.group_PDB _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _citation.journal_id_CSD _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.formula_weight _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_struct_oper_list.symmetry_operation _struct_conf.end_auth_comp_id _struct_conf.end_label_comp_id _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_end _struct_ref_seq.seq_align_end N RCSB Y RCSB 2015-11-10 REL REL 1 C O HOH 136 6.43 HOH water 32630 synthetic construct sample 1 31 5EOJ PDB experimental model HOH 59 2 HOH HOH 101 A HOH 99 2 HOH HOH 102 A HOH 46 2 HOH HOH 103 A HOH 98 2 HOH HOH 104 A HOH 4 2 HOH HOH 105 A HOH 69 2 HOH HOH 106 A HOH 55 2 HOH HOH 107 A HOH 23 2 HOH HOH 108 A HOH 91 2 HOH HOH 109 A HOH 5 2 HOH HOH 110 A HOH 6 2 HOH HOH 111 A HOH 11 2 HOH HOH 112 A HOH 83 2 HOH HOH 113 A HOH 56 2 HOH HOH 114 A HOH 94 2 HOH HOH 115 A HOH 16 2 HOH HOH 116 A HOH 39 2 HOH HOH 117 A HOH 86 2 HOH HOH 118 A HOH 40 2 HOH HOH 119 A HOH 29 2 HOH HOH 120 A HOH 101 2 HOH HOH 121 A HOH 50 2 HOH HOH 122 A HOH 63 2 HOH HOH 123 A HOH 76 2 HOH HOH 124 A HOH 53 2 HOH HOH 125 A HOH 22 2 HOH HOH 126 A HOH 24 2 HOH HOH 127 A HOH 12 2 HOH HOH 128 A HOH 90 2 HOH HOH 129 A HOH 15 2 HOH HOH 130 A HOH 43 2 HOH HOH 131 A HOH 27 2 HOH HOH 132 A HOH 36 2 HOH HOH 133 A HOH 31 2 HOH HOH 134 A HOH 61 2 HOH HOH 135 A HOH 38 2 HOH HOH 136 A HOH 92 2 HOH HOH 137 A HOH 96 2 HOH HOH 138 A HOH 44 2 HOH HOH 101 B HOH 74 2 HOH HOH 102 B HOH 100 2 HOH HOH 103 B HOH 84 2 HOH HOH 104 B HOH 35 2 HOH HOH 105 B HOH 42 2 HOH HOH 106 B HOH 51 2 HOH HOH 107 B HOH 1 2 HOH HOH 108 B HOH 82 2 HOH HOH 109 B HOH 28 2 HOH HOH 110 B HOH 65 2 HOH HOH 111 B HOH 70 2 HOH HOH 112 B HOH 89 2 HOH HOH 113 B HOH 20 2 HOH HOH 114 B HOH 2 2 HOH HOH 115 B HOH 95 2 HOH HOH 116 B HOH 30 2 HOH HOH 117 B HOH 72 2 HOH HOH 118 B HOH 14 2 HOH HOH 119 B HOH 26 2 HOH HOH 120 B HOH 93 2 HOH HOH 121 B HOH 79 2 HOH HOH 122 B HOH 64 2 HOH HOH 123 B HOH 78 2 HOH HOH 124 B HOH 49 2 HOH HOH 125 B HOH 77 2 HOH HOH 126 B HOH 52 2 HOH HOH 127 B HOH 54 2 HOH HOH 101 C HOH 88 2 HOH HOH 102 C HOH 45 2 HOH HOH 103 C HOH 73 2 HOH HOH 104 C HOH 7 2 HOH HOH 105 C HOH 33 2 HOH HOH 106 C HOH 9 2 HOH HOH 107 C HOH 81 2 HOH HOH 108 C HOH 21 2 HOH HOH 109 C HOH 25 2 HOH HOH 110 C HOH 48 2 HOH HOH 111 C HOH 85 2 HOH HOH 112 C HOH 57 2 HOH HOH 113 C HOH 3 2 HOH HOH 114 C HOH 8 2 HOH HOH 115 C HOH 62 2 HOH HOH 116 C HOH 80 2 HOH HOH 117 C HOH 32 2 HOH HOH 118 C HOH 19 2 HOH HOH 119 C HOH 17 2 HOH HOH 120 C HOH 60 2 HOH HOH 121 C HOH 10 2 HOH HOH 122 C HOH 18 2 HOH HOH 123 C HOH 37 2 HOH HOH 124 C HOH 71 2 HOH HOH 125 C HOH 75 2 HOH HOH 126 C HOH 47 2 HOH HOH 127 C HOH 87 2 HOH HOH 128 C HOH 34 2 HOH HOH 129 C HOH 41 2 HOH HOH 130 C HOH 68 2 HOH HOH 131 C HOH 58 2 HOH HOH 132 C HOH 66 2 HOH HOH 133 C HOH 13 2 HOH HOH 134 C HOH 67 2 HOH HOH 135 C HOH 97 2 HOH HOH 136 C ACE 1 n 1 ACE 1 A GLU 2 n 2 GLU 2 A LEU 3 n 3 LEU 3 A LYS 4 n 4 LYS 4 A ALA 5 n 5 ALA 5 A ILE 6 n 6 ILE 6 A ALA 7 n 7 ALA 7 A GLN 8 n 8 GLN 8 A GLU 9 n 9 GLU 9 A PHE 10 n 10 PHE 10 A LYS 11 n 11 LYS 11 A ALA 12 n 12 ALA 12 A ILE 13 n 13 ILE 13 A ALA 14 n 14 ALA 14 A LYS 15 n 15 LYS 15 A GLU 16 n 16 GLU 16 A PHE 17 n 17 PHE 17 A LYS 18 n 18 LYS 18 A ALA 19 n 19 ALA 19 A ILE 20 n 20 ILE 20 A ALA 21 n 21 ALA 21 A TRP 22 n 22 TRP 22 A GLU 23 n 23 GLU 23 A PHE 24 n 24 PHE 24 A LYS 25 n 25 LYS 25 A ALA 26 n 26 ALA 26 A ILE 27 n 27 ILE 27 A ALA 28 n 28 ALA 28 A GLN 29 n 29 GLN 29 A LYA 30 n 30 LYS 30 A LYA 30 n 31 NH2 31 A ACE 1 n 1 ACE 1 B GLU 2 n 2 GLU 2 B LEU 3 n 3 LEU 3 B LYS 4 n 4 LYS 4 B ALA 5 n 5 ALA 5 B ILE 6 n 6 ILE 6 B ALA 7 n 7 ALA 7 B GLN 8 n 8 GLN 8 B GLU 9 n 9 GLU 9 B PHE 10 n 10 PHE 10 B LYS 11 n 11 LYS 11 B ALA 12 n 12 ALA 12 B ILE 13 n 13 ILE 13 B ALA 14 n 14 ALA 14 B LYS 15 n 15 LYS 15 B GLU 16 n 16 GLU 16 B PHE 17 n 17 PHE 17 B LYS 18 n 18 LYS 18 B ALA 19 n 19 ALA 19 B ILE 20 n 20 ILE 20 B ALA 21 n 21 ALA 21 B TRP 22 n 22 TRP 22 B GLU 23 n 23 GLU 23 B PHE 24 n 24 PHE 24 B LYS 25 n 25 LYS 25 B ALA 26 n 26 ALA 26 B ILE 27 n 27 ILE 27 B ALA 28 n 28 ALA 28 B GLN 29 n 29 GLN 29 B LYA 30 n 30 LYS 30 B LYA 30 n 31 NH2 31 B ACE 1 n 1 ACE 1 C GLU 2 n 2 GLU 2 C LEU 3 n 3 LEU 3 C LYS 4 n 4 LYS 4 C ALA 5 n 5 ALA 5 C ILE 6 n 6 ILE 6 C ALA 7 n 7 ALA 7 C GLN 8 n 8 GLN 8 C GLU 9 n 9 GLU 9 C PHE 10 n 10 PHE 10 C LYS 11 n 11 LYS 11 C ALA 12 n 12 ALA 12 C ILE 13 n 13 ILE 13 C ALA 14 n 14 ALA 14 C LYS 15 n 15 LYS 15 C GLU 16 n 16 GLU 16 C PHE 17 n 17 PHE 17 C LYS 18 n 18 LYS 18 C ALA 19 n 19 ALA 19 C ILE 20 n 20 ILE 20 C ALA 21 n 21 ALA 21 C TRP 22 n 22 TRP 22 C GLU 23 n 23 GLU 23 C PHE 24 n 24 PHE 24 C LYS 25 n 25 LYS 25 C ALA 26 n 26 ALA 26 C ILE 27 n 27 ILE 27 C ALA 28 n 28 ALA 28 C GLN 29 n 29 GLN 29 C LYA 30 n 30 LYS 30 C LYA 30 n 31 NH2 31 C 2.7344 -0.8148 0.7139 3.9031 -1.2361 2.7352 -0.1420 -0.0308 -0.0174 0.0895 -0.0213 -0.2952 -0.2182 0.4651 0.1872 0.1197 -0.0222 0.0037 0.1452 0.0787 0.3041 refined -5.8328 -13.0619 1.2028 X-RAY DIFFRACTION 2.0461 1.0153 -1.7698 2.3988 -0.9162 4.2903 -0.1391 -0.0756 -0.2397 0.2952 0.0855 -0.0450 0.1419 0.3185 0.1623 0.1216 0.0368 0.0207 0.1394 0.0674 0.3210 refined -7.8566 -19.8851 -1.9469 X-RAY DIFFRACTION 3.3639 -0.5468 -1.6926 1.7908 1.3831 2.6650 0.0285 0.1676 -0.1743 0.1873 0.1442 0.0167 0.5308 -0.2473 0.1296 0.1830 -0.0141 -0.0120 0.1175 0.0651 0.3187 refined -17.4300 -22.7320 1.2605 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'B' and (resid 2 through 29 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 2 through 29 ) X-RAY DIFFRACTION 3 chain 'C' and (resid 2 through 29 ) author_and_software_defined_assembly PISA 6 hexameric 11130 -110 10220 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 C HOH 119 F HOH 1 A A HZ2 O LYS HOH 18 102 1.58 1 A B O O HOH HOH 136 107 2.14 1 A A O O HOH HOH 107 114 2.19 1 12.92 2.00 110.40 123.32 A A A CB CA C LYS LYS LYS 30 30 30 N 1 A A N CA LYS LYS 30 30 -0.157 0.020 1.459 1.302 N 1 B B N CA LYS LYS 30 30 -0.156 0.020 1.459 1.303 N 1 C C N CA LYS LYS 30 30 -0.154 0.020 1.459 1.305 N 0.2217 0.1980 0.2003 1.696 32.754 1080 10797 10.00 99.53 0.15 1 FREE R-VALUE 1.37 MOLECULAR REPLACEMENT 21.89 0.90 1.11 5EOJ ML FLAT BULK SOLVENT MODEL 1.696 32.754 101 818 0 0 717 0.002 786 0.389 1054 19.116 476 0.035 107 0.001 134 0.2813 0.2523 1.7735 127 1145 97.00 0.2676 0.2241 1.8670 133 1195 100.00 0.2447 0.2430 1.9839 133 1199 100.00 0.2233 0.1927 2.1371 133 1196 100.00 0.2278 0.1837 2.3521 134 1203 100.00 0.2078 0.1806 2.6923 136 1224 100.00 0.1902 0.1802 3.3915 137 1235 100.00 0.2345 0.2095 32.7597 147 1320 99.00 1.696 32.754 5EON 10805 0.01 1 31.70 2 100 0.19 1.696 1.757 3.42 1 1.9 96 refinement PHENIX (1.10.1_2155: ???) data reduction XDS data scaling Aimless phasing PHASER Crystal structure of a de novo antiparallel coiled-coil hexamer - ACC-Hex 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N A GLU 2 A GLU 2 HELX_P A LYS 30 A LYS 30 1 AA1 29 B GLU 2 B GLU 2 HELX_P B GLN 29 B GLN 29 1 AA2 28 C GLU 2 C GLU 2 HELX_P C LYS 30 C LYS 30 1 AA3 29 covale 1.331 both A ACE 1 A C ACE 1 1_555 A GLU 2 A N GLU 2 1_555 covale 1.447 both A LYS 30 A C LYS 30 1_555 A NH2 31 A N NH2 31 1_555 covale 1.330 both B ACE 1 B C ACE 1 1_555 B GLU 2 B N GLU 2 1_555 covale 1.447 both B LYS 30 B C LYS 30 1_555 B NH2 31 B N NH2 31 1_555 covale 1.331 both C ACE 1 C C ACE 1 1_555 C GLU 2 C N GLU 2 1_555 covale 1.448 both C LYS 30 C C LYS 30 1_555 C NH2 31 C N NH2 31 1_555 DE NOVO PROTEIN hexamer, coiled-coil, antiparallel, DE NOVO PROTEIN 5EON PDB 1 1 5EON 1 31 5EON 1 31 5EON A 1 1 31 1 31 5EON 1 31 5EON B 1 1 31 1 31 5EON 1 31 5EON C 1 1 31 94 P 42 21 2