0.018220 0.000000 0.000000 -0.000000 0.014577 0.000000 0.000000 -0.000000 0.010675 0.00000 0.00000 0.00000 Kolenko, P. Zahradnik, J. Zuskova, I. Cerny, J. Palyzova, A. Kyslikova, E. Schneider, B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 54.885 68.599 93.677 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US PLoS ONE 1932-6203 13 e0195299 e0195299 10.1371/journal.pone.0195299 29630677 The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form. 2018 0000-0001-7855-3690 100 1 PIXEL 2014-08-20 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.91841 1.0 14.2 BESSY 0.91841 SYNCHROTRON BESSY BEAMLINE 14.2 C-terminal pentapeptide region tightly interact with the crystal symmetry mate. FMN site is not occupied. 41141.840 Glycerol trinitrate reductase 1 man polymer 18.015 water 221 nat water no no MGSSHHHHHHSSGLVPRGSHMTKTTLFQPTSLGAITLANRIVMAPLTRNRAGAGFVPGELTAGYYAQRASAGLIISEATQ ISQQGQGYQDTPGIYTQAQIDGWKKVTAAVHKKGGRIVLQLWHVGRISHVNLQPNGGAPVAPSAIRAEVKTFVNNGFVDV SEPRALELEELAGIVDDFRKAAANSIEAGFDGVEVHGANGYLLEQFAKDGANMRTDTYGGSVENRARLMLEVTAAVAQEI GPERTGIRISPVSPANGISCSDPQTQYDYIVDKLDALGIAYIHVVEGATGGPRDVAPFDYGSLRRRFSRTYIANNGFDLE LATSHLADGRADLIAFGRPFIANPDLVERLQSGAPLAEVNAAKIFGGSAAGYTDYPRFSETTSDN MGSSHHHHHHSSGLVPRGSHMTKTTLFQPTSLGAITLANRIVMAPLTRNRAGAGFVPGELTAGYYAQRASAGLIISEATQ ISQQGQGYQDTPGIYTQAQIDGWKKVTAAVHKKGGRIVLQLWHVGRISHVNLQPNGGAPVAPSAIRAEVKTFVNNGFVDV SEPRALELEELAGIVDDFRKAAANSIEAGFDGVEVHGANGYLLEQFAKDGANMRTDTYGGSVENRARLMLEVTAAVAQEI GPERTGIRISPVSPANGISCSDPQTQYDYIVDKLDALGIAYIHVVEGATGGPRDVAPFDYGSLRRRFSRTYIANNGFDLE LATSHLADGRADLIAFGRPFIANPDLVERLQSGAPLAEVNAAKIFGGSAAGYTDYPRFSETTSDN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 385 xdpB 358 Agrobacterium tumefaciens 469008 Escherichia coli BL21(DE3) ArcticExpress Biological sequence 2.14 42.61 VAPOR DIFFUSION, HANGING DROP 8.02 50 mM tri-Lithium citrate, 32 % (w/v) PEG 3350, not buffered 281 citation citation_author pdbx_database_proc repository Initial release Data collection Database references 1 0 2016-11-23 1 1 2019-02-27 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year Czech Republic Charles University 720414 4JIC contains close homolog (57%) of glycerol trinitrate reductase with bound FMN. N RCSB Y PDBE 2015-11-11 REL REL HOH water HOH 1189 2 HOH HOH 401 A HOH 1804 2 HOH HOH 402 A HOH 1044 2 HOH HOH 403 A HOH 1028 2 HOH HOH 404 A HOH 1011 2 HOH HOH 405 A HOH 1065 2 HOH HOH 406 A HOH 1807 2 HOH HOH 407 A HOH 1527 2 HOH HOH 408 A HOH 1809 2 HOH HOH 409 A HOH 1819 2 HOH HOH 410 A HOH 1181 2 HOH HOH 411 A HOH 1184 2 HOH HOH 412 A HOH 1008 2 HOH HOH 413 A HOH 1803 2 HOH HOH 414 A HOH 1518 2 HOH HOH 415 A HOH 1510 2 HOH HOH 416 A HOH 1523 2 HOH HOH 417 A HOH 1035 2 HOH HOH 418 A HOH 1812 2 HOH HOH 419 A HOH 1185 2 HOH HOH 420 A HOH 1022 2 HOH HOH 421 A HOH 1069 2 HOH HOH 422 A HOH 1529 2 HOH HOH 423 A HOH 1003 2 HOH HOH 424 A HOH 1188 2 HOH HOH 425 A HOH 1068 2 HOH HOH 426 A HOH 1592 2 HOH HOH 427 A HOH 1179 2 HOH HOH 428 A HOH 1161 2 HOH HOH 429 A HOH 1005 2 HOH HOH 430 A HOH 1017 2 HOH HOH 431 A HOH 1525 2 HOH HOH 432 A HOH 1140 2 HOH HOH 433 A HOH 1521 2 HOH HOH 434 A HOH 2813 2 HOH HOH 435 A HOH 1041 2 HOH HOH 436 A HOH 1552 2 HOH HOH 437 A HOH 1070 2 HOH HOH 438 A HOH 1502 2 HOH HOH 439 A HOH 1007 2 HOH HOH 440 A HOH 1064 2 HOH HOH 441 A HOH 1190 2 HOH HOH 442 A HOH 1515 2 HOH HOH 443 A HOH 1053 2 HOH HOH 444 A HOH 1573 2 HOH HOH 445 A HOH 1006 2 HOH HOH 446 A HOH 1061 2 HOH HOH 447 A HOH 3873 2 HOH HOH 448 A HOH 1024 2 HOH HOH 449 A HOH 1826 2 HOH HOH 450 A HOH 1152 2 HOH HOH 451 A HOH 1539 2 HOH HOH 452 A HOH 1162 2 HOH HOH 453 A HOH 1520 2 HOH HOH 454 A HOH 1596 2 HOH HOH 455 A HOH 1080 2 HOH HOH 456 A HOH 1010 2 HOH HOH 457 A HOH 1088 2 HOH HOH 458 A HOH 1514 2 HOH HOH 459 A HOH 1048 2 HOH HOH 460 A HOH 1875 2 HOH HOH 461 A HOH 2816 2 HOH HOH 462 A HOH 1506 2 HOH HOH 463 A HOH 2853 2 HOH HOH 464 A HOH 1207 2 HOH HOH 465 A HOH 1038 2 HOH HOH 466 A HOH 1532 2 HOH HOH 467 A HOH 1019 2 HOH HOH 468 A HOH 1081 2 HOH HOH 469 A HOH 1503 2 HOH HOH 470 A HOH 1501 2 HOH HOH 471 A HOH 1037 2 HOH HOH 472 A HOH 1046 2 HOH HOH 473 A HOH 1042 2 HOH HOH 474 A HOH 1084 2 HOH HOH 475 A HOH 1104 2 HOH HOH 476 A HOH 1027 2 HOH HOH 477 A HOH 2878 2 HOH HOH 478 A HOH 1094 2 HOH HOH 479 A HOH 1509 2 HOH HOH 480 A HOH 1120 2 HOH HOH 481 A HOH 2885 2 HOH HOH 482 A HOH 1052 2 HOH HOH 483 A HOH 1585 2 HOH HOH 484 A HOH 2818 2 HOH HOH 485 A HOH 1032 2 HOH HOH 486 A HOH 1002 2 HOH HOH 487 A HOH 1001 2 HOH HOH 488 A HOH 1623 2 HOH HOH 489 A HOH 1197 2 HOH HOH 490 A HOH 1086 2 HOH HOH 491 A HOH 3890 2 HOH HOH 492 A HOH 1059 2 HOH HOH 493 A HOH 1050 2 HOH HOH 494 A HOH 1013 2 HOH HOH 495 A HOH 1012 2 HOH HOH 496 A HOH 1020 2 HOH HOH 497 A HOH 1095 2 HOH HOH 498 A HOH 1014 2 HOH HOH 499 A HOH 1029 2 HOH HOH 500 A HOH 1547 2 HOH HOH 501 A HOH 1040 2 HOH HOH 502 A HOH 1101 2 HOH HOH 503 A HOH 1163 2 HOH HOH 504 A HOH 1047 2 HOH HOH 505 A HOH 1139 2 HOH HOH 506 A HOH 1066 2 HOH HOH 507 A HOH 1194 2 HOH HOH 508 A HOH 1211 2 HOH HOH 509 A HOH 1090 2 HOH HOH 510 A HOH 1508 2 HOH HOH 511 A HOH 1056 2 HOH HOH 512 A HOH 1107 2 HOH HOH 513 A HOH 1083 2 HOH HOH 514 A HOH 1196 2 HOH HOH 515 A HOH 1074 2 HOH HOH 516 A HOH 3809 2 HOH HOH 517 A HOH 1847 2 HOH HOH 518 A HOH 1096 2 HOH HOH 519 A HOH 1159 2 HOH HOH 520 A HOH 1025 2 HOH HOH 521 A HOH 1009 2 HOH HOH 522 A HOH 1036 2 HOH HOH 523 A HOH 1167 2 HOH HOH 524 A HOH 1063 2 HOH HOH 525 A HOH 1883 2 HOH HOH 526 A HOH 3865 2 HOH HOH 527 A HOH 1129 2 HOH HOH 528 A HOH 1112 2 HOH HOH 529 A HOH 1018 2 HOH HOH 530 A HOH 1505 2 HOH HOH 531 A HOH 1537 2 HOH HOH 532 A HOH 1097 2 HOH HOH 533 A HOH 1183 2 HOH HOH 534 A HOH 1856 2 HOH HOH 535 A HOH 1030 2 HOH HOH 536 A HOH 1597 2 HOH HOH 537 A HOH 1049 2 HOH HOH 538 A HOH 1198 2 HOH HOH 539 A HOH 1519 2 HOH HOH 540 A HOH 2862 2 HOH HOH 541 A HOH 1528 2 HOH HOH 542 A HOH 1526 2 HOH HOH 543 A HOH 1191 2 HOH HOH 544 A HOH 1079 2 HOH HOH 545 A HOH 1571 2 HOH HOH 546 A HOH 1124 2 HOH HOH 547 A HOH 1524 2 HOH HOH 548 A HOH 1015 2 HOH HOH 549 A HOH 1151 2 HOH HOH 550 A HOH 1880 2 HOH HOH 551 A HOH 1085 2 HOH HOH 552 A HOH 1067 2 HOH HOH 553 A HOH 1147 2 HOH HOH 554 A HOH 1210 2 HOH HOH 555 A HOH 1121 2 HOH HOH 556 A HOH 3894 2 HOH HOH 557 A HOH 1106 2 HOH HOH 558 A HOH 2894 2 HOH HOH 559 A HOH 1593 2 HOH HOH 560 A HOH 1625 2 HOH HOH 561 A HOH 1534 2 HOH HOH 562 A HOH 1536 2 HOH HOH 563 A HOH 1130 2 HOH HOH 564 A HOH 1568 2 HOH HOH 565 A HOH 1075 2 HOH HOH 566 A HOH 1100 2 HOH HOH 567 A HOH 1200 2 HOH HOH 568 A HOH 1601 2 HOH HOH 569 A HOH 1906 2 HOH HOH 570 A HOH 1110 2 HOH HOH 571 A HOH 2851 2 HOH HOH 572 A HOH 1055 2 HOH HOH 573 A HOH 1535 2 HOH HOH 574 A HOH 1186 2 HOH HOH 575 A HOH 1157 2 HOH HOH 576 A HOH 2884 2 HOH HOH 577 A HOH 1867 2 HOH HOH 578 A HOH 1099 2 HOH HOH 579 A HOH 1182 2 HOH HOH 580 A HOH 1887 2 HOH HOH 581 A HOH 1168 2 HOH HOH 582 A HOH 1051 2 HOH HOH 583 A HOH 1138 2 HOH HOH 584 A HOH 2837 2 HOH HOH 585 A HOH 1204 2 HOH HOH 586 A HOH 1576 2 HOH HOH 587 A HOH 1558 2 HOH HOH 588 A HOH 1889 2 HOH HOH 589 A HOH 1815 2 HOH HOH 590 A HOH 1180 2 HOH HOH 591 A HOH 1203 2 HOH HOH 592 A HOH 1146 2 HOH HOH 593 A HOH 2829 2 HOH HOH 594 A HOH 1202 2 HOH HOH 595 A HOH 2865 2 HOH HOH 596 A HOH 1587 2 HOH HOH 597 A HOH 1057 2 HOH HOH 598 A HOH 1565 2 HOH HOH 599 A HOH 1206 2 HOH HOH 600 A HOH 1187 2 HOH HOH 601 A HOH 3895 2 HOH HOH 602 A HOH 1054 2 HOH HOH 603 A HOH 1193 2 HOH HOH 604 A HOH 1862 2 HOH HOH 605 A HOH 1866 2 HOH HOH 606 A HOH 1205 2 HOH HOH 607 A HOH 1123 2 HOH HOH 608 A HOH 1548 2 HOH HOH 609 A HOH 1192 2 HOH HOH 610 A HOH 1209 2 HOH HOH 611 A HOH 1136 2 HOH HOH 612 A HOH 1195 2 HOH HOH 613 A HOH 1624 2 HOH HOH 614 A HOH 1199 2 HOH HOH 615 A HOH 1627 2 HOH HOH 616 A HOH 1895 2 HOH HOH 617 A HOH 1614 2 HOH HOH 618 A HOH 2909 2 HOH HOH 619 A HOH 1208 2 HOH HOH 620 A HOH 1062 2 HOH HOH 621 A n 1 -19 A n 2 -18 A n 3 -17 A n 4 -16 A n 5 -15 A n 6 -14 A n 7 -13 A n 8 -12 A n 9 -11 A n 10 -10 A n 11 -9 A n 12 -8 A n 13 -7 A n 14 -6 A n 15 -5 A n 16 -4 A n 17 -3 A n 18 -2 A n 19 -1 A n 20 0 A n 21 1 A n 22 2 A n 23 3 A n 24 4 A THR 5 n 25 THR 5 A LEU 6 n 26 LEU 6 A PHE 7 n 27 PHE 7 A GLN 8 n 28 GLN 8 A PRO 9 n 29 PRO 9 A THR 10 n 30 THR 10 A SER 11 n 31 SER 11 A LEU 12 n 32 LEU 12 A GLY 13 n 33 GLY 13 A ALA 14 n 34 ALA 14 A ILE 15 n 35 ILE 15 A THR 16 n 36 THR 16 A LEU 17 n 37 LEU 17 A ALA 18 n 38 ALA 18 A ASN 19 n 39 ASN 19 A ARG 20 n 40 ARG 20 A ILE 21 n 41 ILE 21 A VAL 22 n 42 VAL 22 A MET 23 n 43 MET 23 A ALA 24 n 44 ALA 24 A PRO 25 n 45 PRO 25 A LEU 26 n 46 LEU 26 A THR 27 n 47 THR 27 A ARG 28 n 48 ARG 28 A ASN 29 n 49 ASN 29 A ARG 30 n 50 ARG 30 A ALA 31 n 51 ALA 31 A GLY 32 n 52 GLY 32 A ALA 33 n 53 ALA 33 A GLY 34 n 54 GLY 34 A PHE 35 n 55 PHE 35 A VAL 36 n 56 VAL 36 A PRO 37 n 57 PRO 37 A GLY 38 n 58 GLY 38 A GLU 39 n 59 GLU 39 A LEU 40 n 60 LEU 40 A THR 41 n 61 THR 41 A ALA 42 n 62 ALA 42 A GLY 43 n 63 GLY 43 A TYR 44 n 64 TYR 44 A TYR 45 n 65 TYR 45 A ALA 46 n 66 ALA 46 A GLN 47 n 67 GLN 47 A ARG 48 n 68 ARG 48 A ALA 49 n 69 ALA 49 A SER 50 n 70 SER 50 A ALA 51 n 71 ALA 51 A GLY 52 n 72 GLY 52 A LEU 53 n 73 LEU 53 A ILE 54 n 74 ILE 54 A ILE 55 n 75 ILE 55 A SER 56 n 76 SER 56 A GLU 57 n 77 GLU 57 A ALA 58 n 78 ALA 58 A THR 59 n 79 THR 59 A GLN 60 n 80 GLN 60 A ILE 61 n 81 ILE 61 A SER 62 n 82 SER 62 A GLN 63 n 83 GLN 63 A GLN 64 n 84 GLN 64 A GLY 65 n 85 GLY 65 A GLN 66 n 86 GLN 66 A GLY 67 n 87 GLY 67 A TYR 68 n 88 TYR 68 A GLN 69 n 89 GLN 69 A ASP 70 n 90 ASP 70 A THR 71 n 91 THR 71 A PRO 72 n 92 PRO 72 A GLY 73 n 93 GLY 73 A ILE 74 n 94 ILE 74 A TYR 75 n 95 TYR 75 A THR 76 n 96 THR 76 A GLN 77 n 97 GLN 77 A ALA 78 n 98 ALA 78 A GLN 79 n 99 GLN 79 A ILE 80 n 100 ILE 80 A ASP 81 n 101 ASP 81 A GLY 82 n 102 GLY 82 A TRP 83 n 103 TRP 83 A LYS 84 n 104 LYS 84 A LYS 85 n 105 LYS 85 A VAL 86 n 106 VAL 86 A THR 87 n 107 THR 87 A ALA 88 n 108 ALA 88 A ALA 89 n 109 ALA 89 A VAL 90 n 110 VAL 90 A HIS 91 n 111 HIS 91 A LYS 92 n 112 LYS 92 A LYS 93 n 113 LYS 93 A GLY 94 n 114 GLY 94 A GLY 95 n 115 GLY 95 A ARG 96 n 116 ARG 96 A ILE 97 n 117 ILE 97 A VAL 98 n 118 VAL 98 A LEU 99 n 119 LEU 99 A GLN 100 n 120 GLN 100 A LEU 101 n 121 LEU 101 A TRP 102 n 122 TRP 102 A HIS 103 n 123 HIS 103 A VAL 104 n 124 VAL 104 A GLY 105 n 125 GLY 105 A ARG 106 n 126 ARG 106 A ILE 107 n 127 ILE 107 A SER 108 n 128 SER 108 A HIS 109 n 129 HIS 109 A VAL 110 n 130 VAL 110 A ASN 111 n 131 ASN 111 A LEU 112 n 132 LEU 112 A GLN 113 n 133 GLN 113 A PRO 114 n 134 PRO 114 A ASN 115 n 135 ASN 115 A GLY 116 n 136 GLY 116 A GLY 117 n 137 GLY 117 A ALA 118 n 138 ALA 118 A PRO 119 n 139 PRO 119 A VAL 120 n 140 VAL 120 A ALA 121 n 141 ALA 121 A PRO 122 n 142 PRO 122 A SER 123 n 143 SER 123 A ALA 124 n 144 ALA 124 A ILE 125 n 145 ILE 125 A ARG 126 n 146 ARG 126 A ALA 127 n 147 ALA 127 A GLU 128 n 148 GLU 128 A VAL 129 n 149 VAL 129 A LYS 130 n 150 LYS 130 A THR 131 n 151 THR 131 A PHE 132 n 152 PHE 132 A VAL 133 n 153 VAL 133 A ASN 134 n 154 ASN 134 A ASN 135 n 155 ASN 135 A GLY 136 n 156 GLY 136 A PHE 137 n 157 PHE 137 A VAL 138 n 158 VAL 138 A ASP 139 n 159 ASP 139 A VAL 140 n 160 VAL 140 A SER 141 n 161 SER 141 A GLU 142 n 162 GLU 142 A PRO 143 n 163 PRO 143 A ARG 144 n 164 ARG 144 A ALA 145 n 165 ALA 145 A LEU 146 n 166 LEU 146 A GLU 147 n 167 GLU 147 A LEU 148 n 168 LEU 148 A GLU 149 n 169 GLU 149 A GLU 150 n 170 GLU 150 A LEU 151 n 171 LEU 151 A ALA 152 n 172 ALA 152 A GLY 153 n 173 GLY 153 A ILE 154 n 174 ILE 154 A VAL 155 n 175 VAL 155 A ASP 156 n 176 ASP 156 A ASP 157 n 177 ASP 157 A PHE 158 n 178 PHE 158 A ARG 159 n 179 ARG 159 A LYS 160 n 180 LYS 160 A ALA 161 n 181 ALA 161 A ALA 162 n 182 ALA 162 A ALA 163 n 183 ALA 163 A ASN 164 n 184 ASN 164 A SER 165 n 185 SER 165 A ILE 166 n 186 ILE 166 A GLU 167 n 187 GLU 167 A ALA 168 n 188 ALA 168 A GLY 169 n 189 GLY 169 A PHE 170 n 190 PHE 170 A ASP 171 n 191 ASP 171 A GLY 172 n 192 GLY 172 A VAL 173 n 193 VAL 173 A GLU 174 n 194 GLU 174 A VAL 175 n 195 VAL 175 A HIS 176 n 196 HIS 176 A GLY 177 n 197 GLY 177 A ALA 178 n 198 ALA 178 A ASN 179 n 199 ASN 179 A GLY 180 n 200 GLY 180 A TYR 181 n 201 TYR 181 A LEU 182 n 202 LEU 182 A LEU 183 n 203 LEU 183 A GLU 184 n 204 GLU 184 A GLN 185 n 205 GLN 185 A PHE 186 n 206 PHE 186 A ALA 187 n 207 ALA 187 A LYS 188 n 208 LYS 188 A ASP 189 n 209 ASP 189 A GLY 190 n 210 GLY 190 A ALA 191 n 211 ALA 191 A ASN 192 n 212 ASN 192 A MET 193 n 213 MET 193 A ARG 194 n 214 ARG 194 A THR 195 n 215 THR 195 A ASP 196 n 216 ASP 196 A THR 197 n 217 THR 197 A TYR 198 n 218 TYR 198 A GLY 199 n 219 GLY 199 A GLY 200 n 220 GLY 200 A SER 201 n 221 SER 201 A VAL 202 n 222 VAL 202 A GLU 203 n 223 GLU 203 A ASN 204 n 224 ASN 204 A ARG 205 n 225 ARG 205 A ALA 206 n 226 ALA 206 A ARG 207 n 227 ARG 207 A LEU 208 n 228 LEU 208 A MET 209 n 229 MET 209 A LEU 210 n 230 LEU 210 A GLU 211 n 231 GLU 211 A VAL 212 n 232 VAL 212 A THR 213 n 233 THR 213 A ALA 214 n 234 ALA 214 A ALA 215 n 235 ALA 215 A VAL 216 n 236 VAL 216 A ALA 217 n 237 ALA 217 A GLN 218 n 238 GLN 218 A GLU 219 n 239 GLU 219 A ILE 220 n 240 ILE 220 A GLY 221 n 241 GLY 221 A PRO 222 n 242 PRO 222 A GLU 223 n 243 GLU 223 A ARG 224 n 244 ARG 224 A THR 225 n 245 THR 225 A GLY 226 n 246 GLY 226 A ILE 227 n 247 ILE 227 A ARG 228 n 248 ARG 228 A ILE 229 n 249 ILE 229 A SER 230 n 250 SER 230 A PRO 231 n 251 PRO 231 A VAL 232 n 252 VAL 232 A SER 233 n 253 SER 233 A PRO 234 n 254 PRO 234 A ALA 235 n 255 ALA 235 A ASN 236 n 256 ASN 236 A GLY 237 n 257 GLY 237 A ILE 238 n 258 ILE 238 A SER 239 n 259 SER 239 A CYS 240 n 260 CYS 240 A SER 241 n 261 SER 241 A ASP 242 n 262 ASP 242 A PRO 243 n 263 PRO 243 A GLN 244 n 264 GLN 244 A THR 245 n 265 THR 245 A GLN 246 n 266 GLN 246 A TYR 247 n 267 TYR 247 A ASP 248 n 268 ASP 248 A TYR 249 n 269 TYR 249 A ILE 250 n 270 ILE 250 A VAL 251 n 271 VAL 251 A ASP 252 n 272 ASP 252 A LYS 253 n 273 LYS 253 A LEU 254 n 274 LEU 254 A ASP 255 n 275 ASP 255 A ALA 256 n 276 ALA 256 A LEU 257 n 277 LEU 257 A GLY 258 n 278 GLY 258 A ILE 259 n 279 ILE 259 A ALA 260 n 280 ALA 260 A TYR 261 n 281 TYR 261 A ILE 262 n 282 ILE 262 A HIS 263 n 283 HIS 263 A VAL 264 n 284 VAL 264 A VAL 265 n 285 VAL 265 A GLU 266 n 286 GLU 266 A n 287 267 A n 288 268 A n 289 269 A n 290 270 A n 291 271 A n 292 272 A n 293 273 A n 294 274 A n 295 275 A n 296 276 A PRO 277 n 297 PRO 277 A PHE 278 n 298 PHE 278 A ASP 279 n 299 ASP 279 A TYR 280 n 300 TYR 280 A GLY 281 n 301 GLY 281 A SER 282 n 302 SER 282 A LEU 283 n 303 LEU 283 A ARG 284 n 304 ARG 284 A ARG 285 n 305 ARG 285 A ARG 286 n 306 ARG 286 A PHE 287 n 307 PHE 287 A SER 288 n 308 SER 288 A ARG 289 n 309 ARG 289 A THR 290 n 310 THR 290 A TYR 291 n 311 TYR 291 A ILE 292 n 312 ILE 292 A ALA 293 n 313 ALA 293 A ASN 294 n 314 ASN 294 A n 315 295 A n 316 296 A n 317 297 A ASP 298 n 318 ASP 298 A LEU 299 n 319 LEU 299 A GLU 300 n 320 GLU 300 A LEU 301 n 321 LEU 301 A ALA 302 n 322 ALA 302 A THR 303 n 323 THR 303 A SER 304 n 324 SER 304 A HIS 305 n 325 HIS 305 A LEU 306 n 326 LEU 306 A ALA 307 n 327 ALA 307 A ASP 308 n 328 ASP 308 A GLY 309 n 329 GLY 309 A ARG 310 n 330 ARG 310 A ALA 311 n 331 ALA 311 A ASP 312 n 332 ASP 312 A LEU 313 n 333 LEU 313 A ILE 314 n 334 ILE 314 A ALA 315 n 335 ALA 315 A PHE 316 n 336 PHE 316 A GLY 317 n 337 GLY 317 A ARG 318 n 338 ARG 318 A PRO 319 n 339 PRO 319 A PHE 320 n 340 PHE 320 A ILE 321 n 341 ILE 321 A ALA 322 n 342 ALA 322 A ASN 323 n 343 ASN 323 A PRO 324 n 344 PRO 324 A ASP 325 n 345 ASP 325 A LEU 326 n 346 LEU 326 A VAL 327 n 347 VAL 327 A GLU 328 n 348 GLU 328 A ARG 329 n 349 ARG 329 A LEU 330 n 350 LEU 330 A GLN 331 n 351 GLN 331 A SER 332 n 352 SER 332 A GLY 333 n 353 GLY 333 A ALA 334 n 354 ALA 334 A PRO 335 n 355 PRO 335 A LEU 336 n 356 LEU 336 A ALA 337 n 357 ALA 337 A GLU 338 n 358 GLU 338 A VAL 339 n 359 VAL 339 A ASN 340 n 360 ASN 340 A ALA 341 n 361 ALA 341 A ALA 342 n 362 ALA 342 A LYS 343 n 363 LYS 343 A ILE 344 n 364 ILE 344 A PHE 345 n 365 PHE 345 A GLY 346 n 366 GLY 346 A GLY 347 n 367 GLY 347 A SER 348 n 368 SER 348 A ALA 349 n 369 ALA 349 A ALA 350 n 370 ALA 350 A GLY 351 n 371 GLY 351 A TYR 352 n 372 TYR 352 A THR 353 n 373 THR 353 A ASP 354 n 374 ASP 354 A TYR 355 n 375 TYR 355 A PRO 356 n 376 PRO 356 A ARG 357 n 377 ARG 357 A PHE 358 n 378 PHE 358 A SER 359 n 379 SER 359 A GLU 360 n 380 GLU 360 A THR 361 n 381 THR 361 A THR 362 n 382 THR 362 A SER 363 n 383 SER 363 A ASP 364 n 384 ASP 364 A ASN 365 n 385 ASN 365 A author_and_software_defined_assembly PISA 1 monomeric 0 0 13850 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 10 A N THR 30 A O LEU 17 A O LEU 37 A N THR 59 A N THR 79 A O TRP 102 A O TRP 122 A N LEU 99 A N LEU 119 A O GLU 174 A O GLU 194 A N VAL 175 A N VAL 195 A O GLY 226 A O GLY 246 A N ILE 229 A N ILE 249 A O HIS 263 A O HIS 283 A N ILE 262 A N ILE 282 A O ILE 292 A O ILE 312 A N ALA 293 A N ALA 313 A O ALA 315 A O ALA 335 A O ILE 314 A O ILE 334 A N VAL 22 A N VAL 42 A N MET 23 A N MET 43 A O ILE 55 A O ILE 75 A N ILE 54 A N ILE 74 A O VAL 98 A O VAL 118 A N GLY 32 A N GLY 52 A O VAL 36 A O VAL 56 A N ALA 121 A N ALA 141 A O ARG 144 A O ARG 164 A N THR 131 A N THR 151 A O VAL 138 A O VAL 158 1 A MET -19 A MET 1 1 Y 1 A GLY -18 A GLY 2 1 Y 1 A SER -17 A SER 3 1 Y 1 A SER -16 A SER 4 1 Y 1 A HIS -15 A HIS 5 1 Y 1 A HIS -14 A HIS 6 1 Y 1 A HIS -13 A HIS 7 1 Y 1 A HIS -12 A HIS 8 1 Y 1 A HIS -11 A HIS 9 1 Y 1 A HIS -10 A HIS 10 1 Y 1 A SER -9 A SER 11 1 Y 1 A SER -8 A SER 12 1 Y 1 A GLY -7 A GLY 13 1 Y 1 A LEU -6 A LEU 14 1 Y 1 A VAL -5 A VAL 15 1 Y 1 A PRO -4 A PRO 16 1 Y 1 A ARG -3 A ARG 17 1 Y 1 A GLY -2 A GLY 18 1 Y 1 A SER -1 A SER 19 1 Y 1 A HIS 0 A HIS 20 1 Y 1 A MET 1 A MET 21 1 Y 1 A THR 2 A THR 22 1 Y 1 A LYS 3 A LYS 23 1 Y 1 A THR 4 A THR 24 1 Y 1 A GLY 267 A GLY 287 1 Y 1 A ALA 268 A ALA 288 1 Y 1 A THR 269 A THR 289 1 Y 1 A GLY 270 A GLY 290 1 Y 1 A GLY 271 A GLY 291 1 Y 1 A PRO 272 A PRO 292 1 Y 1 A ARG 273 A ARG 293 1 Y 1 A ASP 274 A ASP 294 1 Y 1 A VAL 275 A VAL 295 1 Y 1 A ALA 276 A ALA 296 1 Y 1 A ASN 295 A ASN 315 1 Y 1 A GLY 296 A GLY 316 1 Y 1 A PHE 297 A PHE 317 1 Y 1 A ALA 33 -31.54 134.07 1 A ILE 74 -144.08 34.80 1 A ASP 242 -151.70 83.49 1 A ARG 289 -107.03 -153.52 1 A ASP 325 -95.90 30.17 1 A SER 348 -118.52 -165.44 1 A TYR 352 -131.50 -75.28 1 A GLU 360 -104.42 44.79 37 -2.16 0.00 -0.00 4.62 -0.00 -2.45 0.951 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.262 0.198 0.20091 2.10 47.36 20126 5.0 94.01 5.784 0.136 Random selection 1 THROUGHOUT MOLECULAR REPLACEMENT 0.246 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.10 47.36 221 2853 0 0 2632 0.011 0.019 2682 0.001 0.020 2537 1.417 1.952 3642 0.810 3.000 5806 6.388 5.000 345 37.922 23.760 125 15.685 15.000 412 17.458 15.000 22 0.076 0.200 406 0.006 0.021 3134 0.001 0.020 632 2.077 3.555 1389 2.077 3.555 1388 3.307 5.316 1731 3.306 5.316 1732 2.178 3.741 1293 2.176 3.741 1293 3.578 5.527 1911 5.605 28.679 3264 5.508 28.535 3204 0.326 0.312 2.150 64 1243 4.9 83.78 20 2.10 47.36 5EPD 21254 20170 0.068 1 13.0 3.7 94 0.358 2.10 2.16 2.1 1 3.4 86.6 refinement REFMAC 5.8.0073 data reduction XDS data scaling Aimless phasing BALBES Glycerol trinitrate reductase Crystal structure of Glycerol Trinitrate Reductase XdpB from Agrobacterium sp. R89-1 (Apo form) 1 N N 2 N N A ALA 33 A ALA 53 HELX_P A PHE 35 A PHE 55 5 AA1 3 A LEU 40 A LEU 60 HELX_P A GLN 47 A GLN 67 1 AA2 8 A THR 76 A THR 96 HELX_P A LYS 93 A LYS 113 1 AA3 18 A HIS 109 A HIS 129 HELX_P A GLY 117 A GLY 137 5 AA4 9 A GLU 147 A GLU 167 HELX_P A GLU 149 A GLU 169 5 AA5 3 A GLU 150 A GLU 170 HELX_P A ALA 168 A ALA 188 1 AA6 19 A TYR 181 A TYR 201 HELX_P A LYS 188 A LYS 208 1 AA7 8 A SER 201 A SER 221 HELX_P A ALA 206 A ALA 226 1 AA8 6 A ALA 206 A ALA 226 HELX_P A GLY 221 A GLY 241 1 AA9 16 A ASP 242 A ASP 262 HELX_P A LEU 257 A LEU 277 1 AB1 16 A ASP 279 A ASP 299 HELX_P A PHE 287 A PHE 307 1 AB2 9 A LEU 299 A LEU 319 HELX_P A ASP 308 A ASP 328 1 AB3 10 A GLY 317 A GLY 337 HELX_P A ASN 323 A ASN 343 1 AB4 7 A ASP 325 A ASP 345 HELX_P A GLY 333 A GLY 353 1 AB5 9 A ASN 340 A ASN 360 HELX_P A ILE 344 A ILE 364 5 AB6 5 A ARG 357 A ARG 377 HELX_P A THR 361 A THR 381 5 AB7 5 OXIDORECCTASE Old Yellow Enzyme family TIM barrel fold GTN Reductase Xenobiotic degradation, OXIDORECCTASE A0A0A0VDJ9_RHIRD UNP 1 1 A0A0A0VDJ9 MTKTTLFQPTSLGAITLANRIVMAPLTRNRAGAGFVPGELTAGYYAQRASAGLIISEATQISQQGQGYQDTPGIYTQAQI DGWKKVTAAVHKKGGRIVLQLWHVGRISHVNLQPNGGAPVAPSAIRAEVKTFVNNGFVDVSEPRALELEELAGIVDDFRK AAANSIEAGFDGVEVHGANGYLLEQFAKDGANMRTDTYGGSVENRARLMLEVTAAVAQEIGPERTGIRISPVSPANGISC SDPQTQYDYIVDKLDALGIAYIHVVEGATGGPRDVAPFDYGSLRRRFSRTYIANNGFDLELATSHLADGRADLIAFGRPF IANPDLVERLQSGAPLAEVNAAKIFGGSAAGYTDYPRFSETTSDN 1 365 5EPD 1 365 A0A0A0VDJ9 A 1 21 385 1 initiating methionine MET -19 5EPD A A0A0A0VDJ9 UNP 1 1 expression tag GLY -18 5EPD A A0A0A0VDJ9 UNP 2 1 expression tag SER -17 5EPD A A0A0A0VDJ9 UNP 3 1 expression tag SER -16 5EPD A A0A0A0VDJ9 UNP 4 1 expression tag HIS -15 5EPD A A0A0A0VDJ9 UNP 5 1 expression tag HIS -14 5EPD A A0A0A0VDJ9 UNP 6 1 expression tag HIS -13 5EPD A A0A0A0VDJ9 UNP 7 1 expression tag HIS -12 5EPD A A0A0A0VDJ9 UNP 8 1 expression tag HIS -11 5EPD A A0A0A0VDJ9 UNP 9 1 expression tag HIS -10 5EPD A A0A0A0VDJ9 UNP 10 1 expression tag SER -9 5EPD A A0A0A0VDJ9 UNP 11 1 expression tag SER -8 5EPD A A0A0A0VDJ9 UNP 12 1 expression tag GLY -7 5EPD A A0A0A0VDJ9 UNP 13 1 expression tag LEU -6 5EPD A A0A0A0VDJ9 UNP 14 1 expression tag VAL -5 5EPD A A0A0A0VDJ9 UNP 15 1 expression tag PRO -4 5EPD A A0A0A0VDJ9 UNP 16 1 expression tag ARG -3 5EPD A A0A0A0VDJ9 UNP 17 1 expression tag GLY -2 5EPD A A0A0A0VDJ9 UNP 18 1 expression tag SER -1 5EPD A A0A0A0VDJ9 UNP 19 1 expression tag HIS 0 5EPD A A0A0A0VDJ9 UNP 20 2 10 2 2 2 anti-parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel anti-parallel parallel anti-parallel A THR 10 A THR 30 A SER 11 A SER 31 A THR 16 A THR 36 A LEU 17 A LEU 37 A THR 59 A THR 79 A GLN 60 A GLN 80 A ILE 97 A ILE 117 A TRP 102 A TRP 122 A VAL 173 A VAL 193 A HIS 176 A HIS 196 A THR 225 A THR 245 A ILE 229 A ILE 249 A TYR 261 A TYR 281 A VAL 265 A VAL 285 A THR 290 A THR 310 A ASN 294 A ASN 314 A LEU 313 A LEU 333 A PHE 316 A PHE 336 A ILE 21 A ILE 41 A MET 23 A MET 43 A LEU 53 A LEU 73 A ILE 55 A ILE 75 A ILE 97 A ILE 117 A TRP 102 A TRP 122 A ALA 31 A ALA 51 A GLY 32 A GLY 52 A VAL 36 A VAL 56 A PRO 37 A PRO 57 A VAL 120 A VAL 140 A ALA 121 A ALA 141 A ARG 144 A ARG 164 A ALA 145 A ALA 165 A LYS 130 A LYS 150 A VAL 133 A VAL 153 A GLY 136 A GLY 156 A ASP 139 A ASP 159 19 P 21 21 21