0.014029
0.000000
0.000000
-0.000000
0.014029
0.000000
0.000000
-0.000000
0.006651
0.000000
0.000000
0.000000
Krojer, T.
Vollmar, M.
Crawley, L.
Bradley, A.R.
Szykowska, A.
Ruda, G.F.
Yang, H.
Burgess-Brown, N.
Brennan, P.
Bountra, C.
Arrowsmith, C.H.
Edwards, A.
Oppermann, U.
von Delft, F.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
71.280
71.280
150.360
C12 H12 N2 O3
232.235
2-[(furan-2-ylmethylamino)methyl]pyridine-4-carboxylic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
Y
2
N
C
Y
3
N
C
N
4
N
C
N
5
N
C
Y
6
N
C
Y
7
N
C
N
8
N
O
N
9
N
O
Y
10
N
C
Y
11
N
C
Y
12
N
N
Y
13
N
C
N
14
N
C
Y
15
N
O
Y
16
N
C
Y
17
N
C
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
N
N
31
S
C
N
32
N
C
N
33
N
O
N
34
N
C
N
35
N
O
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
C
N
49
N
C
N
50
N
N
N
51
N
C
N
52
N
N
N
53
N
N
N
54
N
O
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
N
N
71
S
C
N
72
N
C
N
73
N
O
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
N
N
78
N
O
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
N
N
88
S
C
N
89
N
C
N
90
N
O
N
91
N
C
N
92
N
C
N
93
N
O
N
94
N
O
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
R
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
S
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
S
C
N
129
N
C
N
130
N
O
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
N
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
Y
181
N
C
Y
182
N
N
Y
183
N
C
Y
184
N
C
Y
185
N
N
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
S
C
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
N
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
S
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
NI
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
O
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
S
N
345
N
O
N
346
N
O
N
347
N
O
N
348
N
O
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
R
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
N
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
ZN
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
Y
4
N
doub
N
5
N
sing
Y
6
N
doub
N
7
N
doub
N
8
N
sing
Y
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
Y
14
N
sing
Y
15
N
doub
Y
16
N
sing
Y
17
N
sing
Y
18
N
doub
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
doub
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
59
1388
1409
10.1021/acs.jmedchem.5b01635
26741168
8-Substituted Pyrido[3,4-d]pyrimidin-4(3H)-one Derivatives As Potent, Cell Permeable, KDM4 (JMJD2) and KDM5 (JARID1) Histone Lysine Demethylase Inhibitors.
2016
10.2210/pdb5f5a/pdb
pdb_00005f5a
100
1
PIXEL
2012-12-20
DECTRIS PILATUS 2M
SINGLE WAVELENGTH
M
x-ray
1
0.92000
1.0
I04-1
Diamond
0.92000
SYNCHROTRON
DIAMOND BEAMLINE I04-1
40017.348
Lysine-specific demethylase 4D
1.14.11.-
Oxidoreductase-2OG
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
58.693
NICKEL (II) ION
1
syn
non-polymer
232.235
2-[(furan-2-ylmethylamino)methyl]pyridine-4-carboxylic acid
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
13
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
18.015
water
344
nat
water
JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D
no
no
YFQSMETMKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIATPLQ
QVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNSPIYGADISGSLFDENTKQWNLGH
LGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSR
GCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEAR
VTFSMDAFVRILQPERYDLWKRGQDR
YFQSMETMKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIATPLQ
QVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNSPIYGADISGSLFDENTKQWNLGH
LGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSR
GCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEAR
VTFSMDAFVRILQPERYDLWKRGQDR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
346
KDM4D, JHDM3D, JMJD2D
9606
Homo sapiens
562
Escherichia coli
Biological sequence
pNIC28-Bsa4
1
2.39
48.46
VAPOR DIFFUSION, SITTING DROP
7.0
30% PEG3350 , 0.1M HEPES pH 7.0 , 0.25M ammonium sulfate
293
Structural Genomics Consortium
SGC
chem_comp_atom
chem_comp_bond
database_2
diffrn_radiation_wavelength
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Database references
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2015-12-16
1
1
2016-04-27
1
2
2016-09-14
1
3
2024-01-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
Y
RCSB
Y
PDBE
2015-12-04
REL
REL
1
A
O
HOH
844
6.21
ZN
ZINC ION
NI
NICKEL (II) ION
5V0
2-[(furan-2-ylmethylamino)methyl]pyridine-4-carboxylic acid
EDO
1,2-ETHANEDIOL
SO4
SULFATE ION
HOH
water
4D6Q
PDB
experimental model
ZN
342
2
ZN
ZN
401
A
NI
343
3
NI
NI
402
A
LIG
1
4
5V0
5V0
403
A
EDO
1
5
EDO
EDO
404
A
EDO
2
5
EDO
EDO
405
A
EDO
3
5
EDO
EDO
406
A
EDO
4
5
EDO
EDO
407
A
EDO
5
5
EDO
EDO
408
A
EDO
6
5
EDO
EDO
409
A
EDO
7
5
EDO
EDO
410
A
EDO
8
5
EDO
EDO
411
A
EDO
9
5
EDO
EDO
412
A
EDO
10
5
EDO
EDO
413
A
EDO
11
5
EDO
EDO
414
A
EDO
12
5
EDO
EDO
415
A
EDO
13
5
EDO
EDO
416
A
SO4
1
6
SO4
SO4
417
A
SO4
2
6
SO4
SO4
418
A
SO4
3
6
SO4
SO4
419
A
SO4
4
6
SO4
SO4
420
A
HOH
99
7
HOH
HOH
501
A
HOH
280
7
HOH
HOH
502
A
HOH
161
7
HOH
HOH
503
A
HOH
169
7
HOH
HOH
504
A
HOH
21
7
HOH
HOH
505
A
HOH
266
7
HOH
HOH
506
A
HOH
498
7
HOH
HOH
507
A
HOH
81
7
HOH
HOH
508
A
HOH
256
7
HOH
HOH
509
A
HOH
92
7
HOH
HOH
510
A
HOH
507
7
HOH
HOH
511
A
HOH
143
7
HOH
HOH
512
A
HOH
255
7
HOH
HOH
513
A
HOH
445
7
HOH
HOH
514
A
HOH
394
7
HOH
HOH
515
A
HOH
192
7
HOH
HOH
516
A
HOH
164
7
HOH
HOH
517
A
HOH
93
7
HOH
HOH
518
A
HOH
142
7
HOH
HOH
519
A
HOH
171
7
HOH
HOH
520
A
HOH
514
7
HOH
HOH
521
A
HOH
174
7
HOH
HOH
522
A
HOH
179
7
HOH
HOH
523
A
HOH
491
7
HOH
HOH
524
A
HOH
132
7
HOH
HOH
525
A
HOH
78
7
HOH
HOH
526
A
HOH
121
7
HOH
HOH
527
A
HOH
326
7
HOH
HOH
528
A
HOH
30
7
HOH
HOH
529
A
HOH
152
7
HOH
HOH
530
A
HOH
124
7
HOH
HOH
531
A
HOH
236
7
HOH
HOH
532
A
HOH
259
7
HOH
HOH
533
A
HOH
497
7
HOH
HOH
534
A
HOH
8
7
HOH
HOH
535
A
HOH
209
7
HOH
HOH
536
A
HOH
494
7
HOH
HOH
537
A
HOH
53
7
HOH
HOH
538
A
HOH
86
7
HOH
HOH
539
A
HOH
151
7
HOH
HOH
540
A
HOH
127
7
HOH
HOH
541
A
HOH
215
7
HOH
HOH
542
A
HOH
94
7
HOH
HOH
543
A
HOH
459
7
HOH
HOH
544
A
HOH
234
7
HOH
HOH
545
A
HOH
104
7
HOH
HOH
546
A
HOH
153
7
HOH
HOH
547
A
HOH
265
7
HOH
HOH
548
A
HOH
31
7
HOH
HOH
549
A
HOH
200
7
HOH
HOH
550
A
HOH
158
7
HOH
HOH
551
A
HOH
212
7
HOH
HOH
552
A
HOH
70
7
HOH
HOH
553
A
HOH
50
7
HOH
HOH
554
A
HOH
62
7
HOH
HOH
555
A
HOH
88
7
HOH
HOH
556
A
HOH
162
7
HOH
HOH
557
A
HOH
267
7
HOH
HOH
558
A
HOH
49
7
HOH
HOH
559
A
HOH
119
7
HOH
HOH
560
A
HOH
84
7
HOH
HOH
561
A
HOH
6
7
HOH
HOH
562
A
HOH
47
7
HOH
HOH
563
A
HOH
113
7
HOH
HOH
564
A
HOH
402
7
HOH
HOH
565
A
HOH
292
7
HOH
HOH
566
A
HOH
134
7
HOH
HOH
567
A
HOH
147
7
HOH
HOH
568
A
HOH
136
7
HOH
HOH
569
A
HOH
17
7
HOH
HOH
570
A
HOH
56
7
HOH
HOH
571
A
HOH
118
7
HOH
HOH
572
A
HOH
45
7
HOH
HOH
573
A
HOH
1
7
HOH
HOH
574
A
HOH
75
7
HOH
HOH
575
A
HOH
510
7
HOH
HOH
576
A
HOH
2
7
HOH
HOH
577
A
HOH
128
7
HOH
HOH
578
A
HOH
103
7
HOH
HOH
579
A
HOH
122
7
HOH
HOH
580
A
HOH
343
7
HOH
HOH
581
A
HOH
54
7
HOH
HOH
582
A
HOH
331
7
HOH
HOH
583
A
HOH
130
7
HOH
HOH
584
A
HOH
59
7
HOH
HOH
585
A
HOH
181
7
HOH
HOH
586
A
HOH
235
7
HOH
HOH
587
A
HOH
210
7
HOH
HOH
588
A
HOH
25
7
HOH
HOH
589
A
HOH
230
7
HOH
HOH
590
A
HOH
52
7
HOH
HOH
591
A
HOH
372
7
HOH
HOH
592
A
HOH
191
7
HOH
HOH
593
A
HOH
516
7
HOH
HOH
594
A
HOH
157
7
HOH
HOH
595
A
HOH
204
7
HOH
HOH
596
A
HOH
105
7
HOH
HOH
597
A
HOH
232
7
HOH
HOH
598
A
HOH
117
7
HOH
HOH
599
A
HOH
145
7
HOH
HOH
600
A
HOH
167
7
HOH
HOH
601
A
HOH
23
7
HOH
HOH
602
A
HOH
135
7
HOH
HOH
603
A
HOH
509
7
HOH
HOH
604
A
HOH
182
7
HOH
HOH
605
A
HOH
133
7
HOH
HOH
606
A
HOH
61
7
HOH
HOH
607
A
HOH
73
7
HOH
HOH
608
A
HOH
139
7
HOH
HOH
609
A
HOH
14
7
HOH
HOH
610
A
HOH
74
7
HOH
HOH
611
A
HOH
505
7
HOH
HOH
612
A
HOH
160
7
HOH
HOH
613
A
HOH
238
7
HOH
HOH
614
A
HOH
98
7
HOH
HOH
615
A
HOH
102
7
HOH
HOH
616
A
HOH
242
7
HOH
HOH
617
A
HOH
170
7
HOH
HOH
618
A
HOH
274
7
HOH
HOH
619
A
HOH
131
7
HOH
HOH
620
A
HOH
44
7
HOH
HOH
621
A
HOH
110
7
HOH
HOH
622
A
HOH
144
7
HOH
HOH
623
A
HOH
37
7
HOH
HOH
624
A
HOH
216
7
HOH
HOH
625
A
HOH
268
7
HOH
HOH
626
A
HOH
330
7
HOH
HOH
627
A
HOH
140
7
HOH
HOH
628
A
HOH
51
7
HOH
HOH
629
A
HOH
107
7
HOH
HOH
630
A
HOH
38
7
HOH
HOH
631
A
HOH
339
7
HOH
HOH
632
A
HOH
414
7
HOH
HOH
633
A
HOH
440
7
HOH
HOH
634
A
HOH
203
7
HOH
HOH
635
A
HOH
15
7
HOH
HOH
636
A
HOH
240
7
HOH
HOH
637
A
HOH
490
7
HOH
HOH
638
A
HOH
19
7
HOH
HOH
639
A
HOH
165
7
HOH
HOH
640
A
HOH
91
7
HOH
HOH
641
A
HOH
317
7
HOH
HOH
642
A
HOH
129
7
HOH
HOH
643
A
HOH
100
7
HOH
HOH
644
A
HOH
231
7
HOH
HOH
645
A
HOH
3
7
HOH
HOH
646
A
HOH
502
7
HOH
HOH
647
A
HOH
20
7
HOH
HOH
648
A
HOH
72
7
HOH
HOH
649
A
HOH
120
7
HOH
HOH
650
A
HOH
32
7
HOH
HOH
651
A
HOH
33
7
HOH
HOH
652
A
HOH
193
7
HOH
HOH
653
A
HOH
359
7
HOH
HOH
654
A
HOH
60
7
HOH
HOH
655
A
HOH
27
7
HOH
HOH
656
A
HOH
141
7
HOH
HOH
657
A
HOH
18
7
HOH
HOH
658
A
HOH
333
7
HOH
HOH
659
A
HOH
218
7
HOH
HOH
660
A
HOH
97
7
HOH
HOH
661
A
HOH
308
7
HOH
HOH
662
A
HOH
43
7
HOH
HOH
663
A
HOH
504
7
HOH
HOH
664
A
HOH
186
7
HOH
HOH
665
A
HOH
250
7
HOH
HOH
666
A
HOH
66
7
HOH
HOH
667
A
HOH
111
7
HOH
HOH
668
A
HOH
360
7
HOH
HOH
669
A
HOH
199
7
HOH
HOH
670
A
HOH
90
7
HOH
HOH
671
A
HOH
41
7
HOH
HOH
672
A
HOH
39
7
HOH
HOH
673
A
HOH
5
7
HOH
HOH
674
A
HOH
69
7
HOH
HOH
675
A
HOH
89
7
HOH
HOH
676
A
HOH
48
7
HOH
HOH
677
A
HOH
35
7
HOH
HOH
678
A
HOH
303
7
HOH
HOH
679
A
HOH
224
7
HOH
HOH
680
A
HOH
16
7
HOH
HOH
681
A
HOH
9
7
HOH
HOH
682
A
HOH
340
7
HOH
HOH
683
A
HOH
312
7
HOH
HOH
684
A
HOH
499
7
HOH
HOH
685
A
HOH
245
7
HOH
HOH
686
A
HOH
80
7
HOH
HOH
687
A
HOH
24
7
HOH
HOH
688
A
HOH
228
7
HOH
HOH
689
A
HOH
40
7
HOH
HOH
690
A
HOH
42
7
HOH
HOH
691
A
HOH
26
7
HOH
HOH
692
A
HOH
194
7
HOH
HOH
693
A
HOH
263
7
HOH
HOH
694
A
HOH
12
7
HOH
HOH
695
A
HOH
220
7
HOH
HOH
696
A
HOH
96
7
HOH
HOH
697
A
HOH
36
7
HOH
HOH
698
A
HOH
115
7
HOH
HOH
699
A
HOH
109
7
HOH
HOH
700
A
HOH
290
7
HOH
HOH
701
A
HOH
345
7
HOH
HOH
702
A
HOH
314
7
HOH
HOH
703
A
HOH
233
7
HOH
HOH
704
A
HOH
106
7
HOH
HOH
705
A
HOH
7
7
HOH
HOH
706
A
HOH
506
7
HOH
HOH
707
A
HOH
241
7
HOH
HOH
708
A
HOH
29
7
HOH
HOH
709
A
HOH
305
7
HOH
HOH
710
A
HOH
95
7
HOH
HOH
711
A
HOH
83
7
HOH
HOH
712
A
HOH
68
7
HOH
HOH
713
A
HOH
71
7
HOH
HOH
714
A
HOH
22
7
HOH
HOH
715
A
HOH
338
7
HOH
HOH
716
A
HOH
492
7
HOH
HOH
717
A
HOH
508
7
HOH
HOH
718
A
HOH
55
7
HOH
HOH
719
A
HOH
294
7
HOH
HOH
720
A
HOH
374
7
HOH
HOH
721
A
HOH
57
7
HOH
HOH
722
A
HOH
185
7
HOH
HOH
723
A
HOH
85
7
HOH
HOH
724
A
HOH
206
7
HOH
HOH
725
A
HOH
67
7
HOH
HOH
726
A
HOH
521
7
HOH
HOH
727
A
HOH
87
7
HOH
HOH
728
A
HOH
336
7
HOH
HOH
729
A
HOH
28
7
HOH
HOH
730
A
HOH
149
7
HOH
HOH
731
A
HOH
334
7
HOH
HOH
732
A
HOH
318
7
HOH
HOH
733
A
HOH
501
7
HOH
HOH
734
A
HOH
123
7
HOH
HOH
735
A
HOH
503
7
HOH
HOH
736
A
HOH
137
7
HOH
HOH
737
A
HOH
346
7
HOH
HOH
738
A
HOH
65
7
HOH
HOH
739
A
HOH
46
7
HOH
HOH
740
A
HOH
513
7
HOH
HOH
741
A
HOH
202
7
HOH
HOH
742
A
HOH
198
7
HOH
HOH
743
A
HOH
150
7
HOH
HOH
744
A
HOH
101
7
HOH
HOH
745
A
HOH
10
7
HOH
HOH
746
A
HOH
357
7
HOH
HOH
747
A
HOH
386
7
HOH
HOH
748
A
HOH
213
7
HOH
HOH
749
A
HOH
515
7
HOH
HOH
750
A
HOH
320
7
HOH
HOH
751
A
HOH
190
7
HOH
HOH
752
A
HOH
208
7
HOH
HOH
753
A
HOH
293
7
HOH
HOH
754
A
HOH
79
7
HOH
HOH
755
A
HOH
518
7
HOH
HOH
756
A
HOH
175
7
HOH
HOH
757
A
HOH
201
7
HOH
HOH
758
A
HOH
222
7
HOH
HOH
759
A
HOH
512
7
HOH
HOH
760
A
HOH
441
7
HOH
HOH
761
A
HOH
166
7
HOH
HOH
762
A
HOH
138
7
HOH
HOH
763
A
HOH
500
7
HOH
HOH
764
A
HOH
187
7
HOH
HOH
765
A
HOH
442
7
HOH
HOH
766
A
HOH
519
7
HOH
HOH
767
A
HOH
58
7
HOH
HOH
768
A
HOH
416
7
HOH
HOH
769
A
HOH
178
7
HOH
HOH
770
A
HOH
427
7
HOH
HOH
771
A
HOH
307
7
HOH
HOH
772
A
HOH
281
7
HOH
HOH
773
A
HOH
261
7
HOH
HOH
774
A
HOH
436
7
HOH
HOH
775
A
HOH
279
7
HOH
HOH
776
A
HOH
77
7
HOH
HOH
777
A
HOH
471
7
HOH
HOH
778
A
HOH
188
7
HOH
HOH
779
A
HOH
430
7
HOH
HOH
780
A
HOH
195
7
HOH
HOH
781
A
HOH
322
7
HOH
HOH
782
A
HOH
472
7
HOH
HOH
783
A
HOH
243
7
HOH
HOH
784
A
HOH
295
7
HOH
HOH
785
A
HOH
108
7
HOH
HOH
786
A
HOH
349
7
HOH
HOH
787
A
HOH
520
7
HOH
HOH
788
A
HOH
180
7
HOH
HOH
789
A
HOH
177
7
HOH
HOH
790
A
HOH
487
7
HOH
HOH
791
A
HOH
401
7
HOH
HOH
792
A
HOH
431
7
HOH
HOH
793
A
HOH
421
7
HOH
HOH
794
A
HOH
456
7
HOH
HOH
795
A
HOH
477
7
HOH
HOH
796
A
HOH
173
7
HOH
HOH
797
A
HOH
432
7
HOH
HOH
798
A
HOH
112
7
HOH
HOH
799
A
HOH
429
7
HOH
HOH
800
A
HOH
381
7
HOH
HOH
801
A
HOH
125
7
HOH
HOH
802
A
HOH
76
7
HOH
HOH
803
A
HOH
461
7
HOH
HOH
804
A
HOH
205
7
HOH
HOH
805
A
HOH
248
7
HOH
HOH
806
A
HOH
455
7
HOH
HOH
807
A
HOH
361
7
HOH
HOH
808
A
HOH
437
7
HOH
HOH
809
A
HOH
391
7
HOH
HOH
810
A
HOH
82
7
HOH
HOH
811
A
HOH
239
7
HOH
HOH
812
A
HOH
434
7
HOH
HOH
813
A
HOH
383
7
HOH
HOH
814
A
HOH
511
7
HOH
HOH
815
A
HOH
252
7
HOH
HOH
816
A
HOH
484
7
HOH
HOH
817
A
HOH
438
7
HOH
HOH
818
A
HOH
289
7
HOH
HOH
819
A
HOH
517
7
HOH
HOH
820
A
HOH
211
7
HOH
HOH
821
A
HOH
64
7
HOH
HOH
822
A
HOH
496
7
HOH
HOH
823
A
HOH
449
7
HOH
HOH
824
A
HOH
371
7
HOH
HOH
825
A
HOH
155
7
HOH
HOH
826
A
HOH
460
7
HOH
HOH
827
A
HOH
172
7
HOH
HOH
828
A
HOH
424
7
HOH
HOH
829
A
HOH
264
7
HOH
HOH
830
A
HOH
246
7
HOH
HOH
831
A
HOH
254
7
HOH
HOH
832
A
HOH
226
7
HOH
HOH
833
A
HOH
482
7
HOH
HOH
834
A
HOH
229
7
HOH
HOH
835
A
HOH
365
7
HOH
HOH
836
A
HOH
479
7
HOH
HOH
837
A
HOH
452
7
HOH
HOH
838
A
HOH
249
7
HOH
HOH
839
A
HOH
439
7
HOH
HOH
840
A
HOH
176
7
HOH
HOH
841
A
HOH
453
7
HOH
HOH
842
A
HOH
444
7
HOH
HOH
843
A
HOH
447
7
HOH
HOH
844
A
n
1
-3
A
n
2
-2
A
n
3
-1
A
n
4
0
A
n
5
1
A
n
6
2
A
n
7
3
A
n
8
4
A
n
9
5
A
n
10
6
A
n
11
7
A
n
12
8
A
n
13
9
A
n
14
10
A
ALA
11
n
15
ALA
11
A
GLN
12
n
16
GLN
12
A
ASN
13
n
17
ASN
13
A
PRO
14
n
18
PRO
14
A
ASN
15
n
19
ASN
15
A
CYS
16
n
20
CYS
16
A
ASN
17
n
21
ASN
17
A
ILE
18
n
22
ILE
18
A
MET
19
n
23
MET
19
A
ILE
20
n
24
ILE
20
A
PHE
21
n
25
PHE
21
A
HIS
22
n
26
HIS
22
A
PRO
23
n
27
PRO
23
A
THR
24
n
28
THR
24
A
LYS
25
n
29
LYS
25
A
GLU
26
n
30
GLU
26
A
GLU
27
n
31
GLU
27
A
PHE
28
n
32
PHE
28
A
ASN
29
n
33
ASN
29
A
ASP
30
n
34
ASP
30
A
PHE
31
n
35
PHE
31
A
ASP
32
n
36
ASP
32
A
LYS
33
n
37
LYS
33
A
TYR
34
n
38
TYR
34
A
ILE
35
n
39
ILE
35
A
ALA
36
n
40
ALA
36
A
TYR
37
n
41
TYR
37
A
MET
38
n
42
MET
38
A
GLU
39
n
43
GLU
39
A
SER
40
n
44
SER
40
A
GLN
41
n
45
GLN
41
A
GLY
42
n
46
GLY
42
A
ALA
43
n
47
ALA
43
A
HIS
44
n
48
HIS
44
A
ARG
45
n
49
ARG
45
A
ALA
46
n
50
ALA
46
A
GLY
47
n
51
GLY
47
A
LEU
48
n
52
LEU
48
A
ALA
49
n
53
ALA
49
A
LYS
50
n
54
LYS
50
A
ILE
51
n
55
ILE
51
A
ILE
52
n
56
ILE
52
A
PRO
53
n
57
PRO
53
A
PRO
54
n
58
PRO
54
A
LYS
55
n
59
LYS
55
A
GLU
56
n
60
GLU
56
A
TRP
57
n
61
TRP
57
A
LYS
58
n
62
LYS
58
A
ALA
59
n
63
ALA
59
A
ARG
60
n
64
ARG
60
A
GLU
61
n
65
GLU
61
A
THR
62
n
66
THR
62
A
TYR
63
n
67
TYR
63
A
ASP
64
n
68
ASP
64
A
ASN
65
n
69
ASN
65
A
ILE
66
n
70
ILE
66
A
SER
67
n
71
SER
67
A
GLU
68
n
72
GLU
68
A
ILE
69
n
73
ILE
69
A
LEU
70
n
74
LEU
70
A
ILE
71
n
75
ILE
71
A
ALA
72
n
76
ALA
72
A
THR
73
n
77
THR
73
A
PRO
74
n
78
PRO
74
A
LEU
75
n
79
LEU
75
A
GLN
76
n
80
GLN
76
A
GLN
77
n
81
GLN
77
A
VAL
78
n
82
VAL
78
A
ALA
79
n
83
ALA
79
A
SER
80
n
84
SER
80
A
GLY
81
n
85
GLY
81
A
ARG
82
n
86
ARG
82
A
ALA
83
n
87
ALA
83
A
GLY
84
n
88
GLY
84
A
VAL
85
n
89
VAL
85
A
PHE
86
n
90
PHE
86
A
THR
87
n
91
THR
87
A
GLN
88
n
92
GLN
88
A
TYR
89
n
93
TYR
89
A
HIS
90
n
94
HIS
90
A
LYS
91
n
95
LYS
91
A
LYS
92
n
96
LYS
92
A
LYS
93
n
97
LYS
93
A
LYS
94
n
98
LYS
94
A
ALA
95
n
99
ALA
95
A
MET
96
n
100
MET
96
A
THR
97
n
101
THR
97
A
VAL
98
n
102
VAL
98
A
GLY
99
n
103
GLY
99
A
GLU
100
n
104
GLU
100
A
TYR
101
n
105
TYR
101
A
ARG
102
n
106
ARG
102
A
HIS
103
n
107
HIS
103
A
LEU
104
n
108
LEU
104
A
ALA
105
n
109
ALA
105
A
ASN
106
n
110
ASN
106
A
SER
107
n
111
SER
107
A
LYS
108
n
112
LYS
108
A
LYS
109
n
113
LYS
109
A
TYR
110
n
114
TYR
110
A
GLN
111
n
115
GLN
111
A
THR
112
n
116
THR
112
A
PRO
113
n
117
PRO
113
A
PRO
114
n
118
PRO
114
A
HIS
115
n
119
HIS
115
A
GLN
116
n
120
GLN
116
A
ASN
117
n
121
ASN
117
A
PHE
118
n
122
PHE
118
A
GLU
119
n
123
GLU
119
A
ASP
120
n
124
ASP
120
A
LEU
121
n
125
LEU
121
A
GLU
122
n
126
GLU
122
A
ARG
123
n
127
ARG
123
A
LYS
124
n
128
LYS
124
A
TYR
125
n
129
TYR
125
A
TRP
126
n
130
TRP
126
A
LYS
127
n
131
LYS
127
A
ASN
128
n
132
ASN
128
A
ARG
129
n
133
ARG
129
A
ILE
130
n
134
ILE
130
A
TYR
131
n
135
TYR
131
A
ASN
132
n
136
ASN
132
A
SER
133
n
137
SER
133
A
PRO
134
n
138
PRO
134
A
ILE
135
n
139
ILE
135
A
TYR
136
n
140
TYR
136
A
GLY
137
n
141
GLY
137
A
ALA
138
n
142
ALA
138
A
ASP
139
n
143
ASP
139
A
ILE
140
n
144
ILE
140
A
SER
141
n
145
SER
141
A
GLY
142
n
146
GLY
142
A
SER
143
n
147
SER
143
A
LEU
144
n
148
LEU
144
A
PHE
145
n
149
PHE
145
A
ASP
146
n
150
ASP
146
A
GLU
147
n
151
GLU
147
A
ASN
148
n
152
ASN
148
A
THR
149
n
153
THR
149
A
LYS
150
n
154
LYS
150
A
GLN
151
n
155
GLN
151
A
TRP
152
n
156
TRP
152
A
ASN
153
n
157
ASN
153
A
LEU
154
n
158
LEU
154
A
GLY
155
n
159
GLY
155
A
HIS
156
n
160
HIS
156
A
LEU
157
n
161
LEU
157
A
GLY
158
n
162
GLY
158
A
THR
159
n
163
THR
159
A
ILE
160
n
164
ILE
160
A
GLN
161
n
165
GLN
161
A
ASP
162
n
166
ASP
162
A
LEU
163
n
167
LEU
163
A
LEU
164
n
168
LEU
164
A
GLU
165
n
169
GLU
165
A
LYS
166
n
170
LYS
166
A
GLU
167
n
171
GLU
167
A
CYS
168
n
172
CYS
168
A
GLY
169
n
173
GLY
169
A
VAL
170
n
174
VAL
170
A
VAL
171
n
175
VAL
171
A
ILE
172
n
176
ILE
172
A
GLU
173
n
177
GLU
173
A
GLY
174
n
178
GLY
174
A
VAL
175
n
179
VAL
175
A
ASN
176
n
180
ASN
176
A
THR
177
n
181
THR
177
A
PRO
178
n
182
PRO
178
A
TYR
179
n
183
TYR
179
A
LEU
180
n
184
LEU
180
A
TYR
181
n
185
TYR
181
A
PHE
182
n
186
PHE
182
A
GLY
183
n
187
GLY
183
A
MET
184
n
188
MET
184
A
TRP
185
n
189
TRP
185
A
LYS
186
n
190
LYS
186
A
THR
187
n
191
THR
187
A
THR
188
n
192
THR
188
A
PHE
189
n
193
PHE
189
A
ALA
190
n
194
ALA
190
A
TRP
191
n
195
TRP
191
A
HIS
192
n
196
HIS
192
A
THR
193
n
197
THR
193
A
GLU
194
n
198
GLU
194
A
ASP
195
n
199
ASP
195
A
MET
196
n
200
MET
196
A
ASP
197
n
201
ASP
197
A
LEU
198
n
202
LEU
198
A
TYR
199
n
203
TYR
199
A
SER
200
n
204
SER
200
A
ILE
201
n
205
ILE
201
A
ASN
202
n
206
ASN
202
A
TYR
203
n
207
TYR
203
A
LEU
204
n
208
LEU
204
A
HIS
205
n
209
HIS
205
A
LEU
206
n
210
LEU
206
A
GLY
207
n
211
GLY
207
A
GLU
208
n
212
GLU
208
A
PRO
209
n
213
PRO
209
A
LYS
210
n
214
LYS
210
A
THR
211
n
215
THR
211
A
TRP
212
n
216
TRP
212
A
TYR
213
n
217
TYR
213
A
VAL
214
n
218
VAL
214
A
VAL
215
n
219
VAL
215
A
PRO
216
n
220
PRO
216
A
PRO
217
n
221
PRO
217
A
GLU
218
n
222
GLU
218
A
HIS
219
n
223
HIS
219
A
GLY
220
n
224
GLY
220
A
GLN
221
n
225
GLN
221
A
ARG
222
n
226
ARG
222
A
LEU
223
n
227
LEU
223
A
GLU
224
n
228
GLU
224
A
ARG
225
n
229
ARG
225
A
LEU
226
n
230
LEU
226
A
ALA
227
n
231
ALA
227
A
ARG
228
n
232
ARG
228
A
GLU
229
n
233
GLU
229
A
LEU
230
n
234
LEU
230
A
PHE
231
n
235
PHE
231
A
PRO
232
n
236
PRO
232
A
GLY
233
n
237
GLY
233
A
SER
234
n
238
SER
234
A
SER
235
n
239
SER
235
A
ARG
236
n
240
ARG
236
A
GLY
237
n
241
GLY
237
A
CYS
238
n
242
CYS
238
A
GLY
239
n
243
GLY
239
A
ALA
240
n
244
ALA
240
A
PHE
241
n
245
PHE
241
A
LEU
242
n
246
LEU
242
A
ARG
243
n
247
ARG
243
A
HIS
244
n
248
HIS
244
A
LYS
245
n
249
LYS
245
A
VAL
246
n
250
VAL
246
A
ALA
247
n
251
ALA
247
A
LEU
248
n
252
LEU
248
A
ILE
249
n
253
ILE
249
A
SER
250
n
254
SER
250
A
PRO
251
n
255
PRO
251
A
THR
252
n
256
THR
252
A
VAL
253
n
257
VAL
253
A
LEU
254
n
258
LEU
254
A
LYS
255
n
259
LYS
255
A
GLU
256
n
260
GLU
256
A
ASN
257
n
261
ASN
257
A
GLY
258
n
262
GLY
258
A
ILE
259
n
263
ILE
259
A
PRO
260
n
264
PRO
260
A
PHE
261
n
265
PHE
261
A
ASN
262
n
266
ASN
262
A
ARG
263
n
267
ARG
263
A
ILE
264
n
268
ILE
264
A
THR
265
n
269
THR
265
A
GLN
266
n
270
GLN
266
A
GLU
267
n
271
GLU
267
A
ALA
268
n
272
ALA
268
A
GLY
269
n
273
GLY
269
A
GLU
270
n
274
GLU
270
A
PHE
271
n
275
PHE
271
A
MET
272
n
276
MET
272
A
VAL
273
n
277
VAL
273
A
THR
274
n
278
THR
274
A
PHE
275
n
279
PHE
275
A
PRO
276
n
280
PRO
276
A
TYR
277
n
281
TYR
277
A
GLY
278
n
282
GLY
278
A
TYR
279
n
283
TYR
279
A
HIS
280
n
284
HIS
280
A
ALA
281
n
285
ALA
281
A
GLY
282
n
286
GLY
282
A
PHE
283
n
287
PHE
283
A
ASN
284
n
288
ASN
284
A
HIS
285
n
289
HIS
285
A
GLY
286
n
290
GLY
286
A
PHE
287
n
291
PHE
287
A
ASN
288
n
292
ASN
288
A
CYS
289
n
293
CYS
289
A
ALA
290
n
294
ALA
290
A
GLU
291
n
295
GLU
291
A
ALA
292
n
296
ALA
292
A
ILE
293
n
297
ILE
293
A
ASN
294
n
298
ASN
294
A
PHE
295
n
299
PHE
295
A
ALA
296
n
300
ALA
296
A
THR
297
n
301
THR
297
A
PRO
298
n
302
PRO
298
A
ARG
299
n
303
ARG
299
A
TRP
300
n
304
TRP
300
A
ILE
301
n
305
ILE
301
A
ASP
302
n
306
ASP
302
A
TYR
303
n
307
TYR
303
A
GLY
304
n
308
GLY
304
A
LYS
305
n
309
LYS
305
A
MET
306
n
310
MET
306
A
ALA
307
n
311
ALA
307
A
SER
308
n
312
SER
308
A
GLN
309
n
313
GLN
309
A
CYS
310
n
314
CYS
310
A
SER
311
n
315
SER
311
A
CYS
312
n
316
CYS
312
A
GLY
313
n
317
GLY
313
A
GLU
314
n
318
GLU
314
A
ALA
315
n
319
ALA
315
A
ARG
316
n
320
ARG
316
A
VAL
317
n
321
VAL
317
A
THR
318
n
322
THR
318
A
PHE
319
n
323
PHE
319
A
SER
320
n
324
SER
320
A
MET
321
n
325
MET
321
A
ASP
322
n
326
ASP
322
A
ALA
323
n
327
ALA
323
A
PHE
324
n
328
PHE
324
A
VAL
325
n
329
VAL
325
A
ARG
326
n
330
ARG
326
A
ILE
327
n
331
ILE
327
A
LEU
328
n
332
LEU
328
A
GLN
329
n
333
GLN
329
A
PRO
330
n
334
PRO
330
A
GLU
331
n
335
GLU
331
A
ARG
332
n
336
ARG
332
A
TYR
333
n
337
TYR
333
A
ASP
334
n
338
ASP
334
A
LEU
335
n
339
LEU
335
A
TRP
336
n
340
TRP
336
A
LYS
337
n
341
LYS
337
A
ARG
338
n
342
ARG
338
A
GLY
339
n
343
GLY
339
A
GLN
340
n
344
GLN
340
A
n
345
341
A
n
346
342
A
software_defined_assembly
PISA
1
monomeric
3370
-24
14660
A
HIS
192
A
NE2
HIS
196
1_555
A
NI
402
C
NI
NI
1_555
A
GLU
194
A
OE2
GLU
198
1_555
101.4
A
HIS
192
A
NE2
HIS
196
1_555
A
NI
402
C
NI
NI
1_555
A
HIS
280
A
NE2
HIS
284
1_555
84.0
A
GLU
194
A
OE2
GLU
198
1_555
A
NI
402
C
NI
NI
1_555
A
HIS
280
A
NE2
HIS
284
1_555
90.2
A
HIS
192
A
NE2
HIS
196
1_555
A
NI
402
C
NI
NI
1_555
A
5V0
403
D
N1
5V0
1_555
96.0
A
GLU
194
A
OE2
GLU
198
1_555
A
NI
402
C
NI
NI
1_555
A
5V0
403
D
N1
5V0
1_555
91.6
A
HIS
280
A
NE2
HIS
284
1_555
A
NI
402
C
NI
NI
1_555
A
5V0
403
D
N1
5V0
1_555
178.3
A
HIS
192
A
NE2
HIS
196
1_555
A
NI
402
C
NI
NI
1_555
A
5V0
403
D
N
5V0
1_555
94.8
A
GLU
194
A
OE2
GLU
198
1_555
A
NI
402
C
NI
NI
1_555
A
5V0
403
D
N
5V0
1_555
160.9
A
HIS
280
A
NE2
HIS
284
1_555
A
NI
402
C
NI
NI
1_555
A
5V0
403
D
N
5V0
1_555
101.7
A
5V0
403
D
N1
5V0
1_555
A
NI
402
C
NI
NI
1_555
A
5V0
403
D
N
5V0
1_555
76.6
A
HIS
192
A
NE2
HIS
196
1_555
A
NI
402
C
NI
NI
1_555
A
HOH
529
V
O
HOH
1_555
166.7
A
GLU
194
A
OE2
GLU
198
1_555
A
NI
402
C
NI
NI
1_555
A
HOH
529
V
O
HOH
1_555
88.9
A
HIS
280
A
NE2
HIS
284
1_555
A
NI
402
C
NI
NI
1_555
A
HOH
529
V
O
HOH
1_555
87.7
A
5V0
403
D
N1
5V0
1_555
A
NI
402
C
NI
NI
1_555
A
HOH
529
V
O
HOH
1_555
92.0
A
5V0
403
D
N
5V0
1_555
A
NI
402
C
NI
NI
1_555
A
HOH
529
V
O
HOH
1_555
76.8
A
CYS
238
A
SG
CYS
242
1_555
A
ZN
401
B
ZN
ZN
1_555
A
HIS
244
A
NE2
HIS
248
1_555
110.1
A
CYS
238
A
SG
CYS
242
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
310
A
SG
CYS
314
1_555
117.5
A
HIS
244
A
NE2
HIS
248
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
310
A
SG
CYS
314
1_555
108.6
A
CYS
238
A
SG
CYS
242
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
312
A
SG
CYS
316
1_555
114.0
A
HIS
244
A
NE2
HIS
248
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
312
A
SG
CYS
316
1_555
99.0
A
CYS
310
A
SG
CYS
314
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
312
A
SG
CYS
316
1_555
106.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
21
A
N
PHE
25
A
O
LYS
50
A
O
LYS
54
A
N
ILE
51
A
N
ILE
55
A
O
PHE
271
A
O
PHE
275
A
O
MET
272
A
O
MET
276
A
N
ASN
202
A
N
ASN
206
A
N
TYR
203
A
N
TYR
207
A
O
GLU
291
A
O
GLU
295
A
O
ALA
290
A
O
ALA
294
A
N
TYR
181
A
N
TYR
185
A
O
PHE
182
A
O
PHE
186
A
N
GLY
137
A
N
GLY
141
A
O
TYR
136
A
O
TYR
140
A
N
LEU
75
A
N
LEU
79
A
N
GLN
76
A
N
GLN
80
A
O
LYS
91
A
O
LYS
95
A
N
PHE
86
A
N
PHE
90
A
O
LEU
248
A
O
LEU
252
A
N
ILE
71
A
N
ILE
75
A
O
MET
96
A
O
MET
100
A
N
HIS
192
A
N
HIS
196
A
O
HIS
280
A
O
HIS
284
A
O
ALA
281
A
O
ALA
285
A
N
TYR
213
A
N
TYR
217
A
N
LYS
210
A
N
LYS
214
A
O
GLN
266
A
O
GLN
270
1
A
CG
LYS
94
A
CG
LYS
98
1
Y
1
A
CD
LYS
94
A
CD
LYS
98
1
Y
1
A
CE
LYS
94
A
CE
LYS
98
1
Y
1
A
NZ
LYS
94
A
NZ
LYS
98
1
Y
1
A
CD
GLU
119
A
CD
GLU
123
1
Y
1
A
OE1
GLU
119
A
OE1
GLU
123
1
Y
1
A
OE2
GLU
119
A
OE2
GLU
123
1
Y
1
A
CG
LYS
166
A
CG
LYS
170
1
Y
1
A
CD
LYS
166
A
CD
LYS
170
1
Y
1
A
CE
LYS
166
A
CE
LYS
170
1
Y
1
A
NZ
LYS
166
A
NZ
LYS
170
1
Y
1
A
NE
ARG
225
A
NE
ARG
229
1
Y
1
A
CZ
ARG
225
A
CZ
ARG
229
1
Y
1
A
NH1
ARG
225
A
NH1
ARG
229
1
Y
1
A
NH2
ARG
225
A
NH2
ARG
229
1
Y
1
A
CG
ARG
316
A
CG
ARG
320
1
Y
1
A
CD
ARG
316
A
CD
ARG
320
1
Y
1
A
NE
ARG
316
A
NE
ARG
320
1
Y
1
A
CZ
ARG
316
A
CZ
ARG
320
1
Y
1
A
NH1
ARG
316
A
NH1
ARG
320
1
Y
1
A
NH2
ARG
316
A
NH2
ARG
320
1
Y
1
A
CG
PHE
319
A
CG
PHE
323
1
Y
1
A
CD1
PHE
319
A
CD1
PHE
323
1
Y
1
A
CD2
PHE
319
A
CD2
PHE
323
1
Y
1
A
CE1
PHE
319
A
CE1
PHE
323
1
Y
1
A
CE2
PHE
319
A
CE2
PHE
323
1
Y
1
A
CZ
PHE
319
A
CZ
PHE
323
1
Y
1
A
CG
ARG
338
A
CG
ARG
342
1
Y
1
A
CD
ARG
338
A
CD
ARG
342
1
Y
1
A
NE
ARG
338
A
NE
ARG
342
1
Y
1
A
CZ
ARG
338
A
CZ
ARG
342
1
Y
1
A
NH1
ARG
338
A
NH1
ARG
342
1
Y
1
A
NH2
ARG
338
A
NH2
ARG
342
1
Y
1
A
CG
GLN
340
A
CG
GLN
344
1
Y
1
A
CD
GLN
340
A
CD
GLN
344
1
Y
1
A
OE1
GLN
340
A
OE1
GLN
344
1
Y
1
A
NE2
GLN
340
A
NE2
GLN
344
1
Y
1
A
TYR
-3
A
TYR
1
1
Y
1
A
PHE
-2
A
PHE
2
1
Y
1
A
GLN
-1
A
GLN
3
1
Y
1
A
SER
0
A
SER
4
1
Y
1
A
MET
1
A
MET
5
1
Y
1
A
GLU
2
A
GLU
6
1
Y
1
A
THR
3
A
THR
7
1
Y
1
A
MET
4
A
MET
8
1
Y
1
A
LYS
5
A
LYS
9
1
Y
1
A
SER
6
A
SER
10
1
Y
1
A
LYS
7
A
LYS
11
1
Y
1
A
ALA
8
A
ALA
12
1
Y
1
A
ASN
9
A
ASN
13
1
Y
1
A
CYS
10
A
CYS
14
1
Y
1
A
ASP
341
A
ASP
345
1
Y
1
A
ARG
342
A
ARG
346
1
Y
1
-11.05
1.80
110.60
99.55
A
A
A
N
CA
CB
ASN
ASN
ASN
176
176
176
N
1
A
LYS
186
77.24
-6.90
1
A
MET
196
59.69
19.84
102.880
19.0750
6.270
0.3100
-0.0000
-0.0000
0.3100
-0.0000
-0.6200
0.9740
0.9640
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.1647
0.1311
0.1328
1.4100
50.4
3769
71618
5.0000
99.9100
1.5020
0.0270
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.0520
0.0500
0.8000
0.8000
1.2000
4D6Q
MAXIMUM LIKELIHOOD
MASK
1.4100
50.4
344
3085
31.53
35.78
91
0
2650
330
0.012
0.019
3001
0.002
0.020
2735
1.532
1.940
4076
0.990
2.993
6302
6.287
5.000
372
35.893
23.706
143
11.962
15.000
474
22.831
15.000
16
0.101
0.200
407
0.008
0.021
3492
0.002
0.020
754
1.610
1.593
1425
1.610
1.594
1426
2.137
2.399
1816
1.734
3.000
5736
36.731
5.000
103
9.883
5.000
5891
0.2020
0.1540
1.4470
289
5183
5472
20
99.8000
1.410
50.400
5F5A
75484
0.998
0.083
0.024
1
18.600
986424
13.100
100.000
0.722
1.410
1.450
3.700
70255
5477
0.901
0.207
1
12.800
0
99.900
0.067
6.310
50.400
40.100
12313
1010
0.999
0.020
1
12.200
0
99.900
data scaling
Aimless
0.1.27
refinement
REFMAC
5.8.0131
data extraction
PDB_EXTRACT
3.15
data reduction
XDS
phasing
REFMAC
Crystal Structure of human JMJD2D complexed with KDOAM16
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
7
N
N
A
GLU
26
A
GLU
30
HELX_P
A
ASN
29
A
ASN
33
5
AA1
4
A
ASP
30
A
ASP
34
HELX_P
A
GLN
41
A
GLN
45
1
AA2
12
A
GLY
42
A
GLY
46
HELX_P
A
ALA
46
A
ALA
50
5
AA3
5
A
VAL
98
A
VAL
102
HELX_P
A
ASN
106
A
ASN
110
1
AA4
9
A
ASN
117
A
ASN
121
HELX_P
A
ARG
129
A
ARG
133
1
AA5
13
A
ILE
130
A
ILE
134
HELX_P
A
ASN
132
A
ASN
136
5
AA6
3
A
THR
159
A
THR
163
HELX_P
A
GLY
169
A
GLY
173
1
AA7
11
A
GLU
194
A
GLU
198
HELX_P
A
LEU
198
A
LEU
202
5
AA8
5
A
PRO
216
A
PRO
220
HELX_P
A
GLU
218
A
GLU
222
5
AA9
3
A
HIS
219
A
HIS
223
HELX_P
A
PHE
231
A
PHE
235
1
AB1
13
A
PHE
231
A
PHE
235
HELX_P
A
CYS
238
A
CYS
242
1
AB2
8
A
ALA
240
A
ALA
244
HELX_P
A
LYS
245
A
LYS
249
5
AB3
6
A
SER
250
A
SER
254
HELX_P
A
ASN
257
A
ASN
261
1
AB4
8
A
ARG
299
A
ARG
303
HELX_P
A
ALA
307
A
ALA
311
1
AB5
9
A
SER
320
A
SER
324
HELX_P
A
GLN
329
A
GLN
333
1
AB6
10
A
GLN
329
A
GLN
333
HELX_P
A
GLN
340
A
GLN
344
1
AB7
12
metalc
2.449
A
HIS
192
A
NE2
HIS
196
1_555
A
NI
402
C
NI
NI
1_555
metalc
2.016
A
GLU
194
A
OE2
GLU
198
1_555
A
NI
402
C
NI
NI
1_555
metalc
2.270
A
CYS
238
A
SG
CYS
242
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.122
A
HIS
244
A
NE2
HIS
248
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.229
A
HIS
280
A
NE2
HIS
284
1_555
A
NI
402
C
NI
NI
1_555
metalc
2.292
A
CYS
310
A
SG
CYS
314
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.309
A
CYS
312
A
SG
CYS
316
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.281
A
NI
402
C
NI
NI
1_555
A
5V0
403
D
N1
5V0
1_555
metalc
2.199
A
NI
402
C
NI
NI
1_555
A
5V0
403
D
N
5V0
1_555
metalc
2.199
A
NI
402
C
NI
NI
1_555
A
HOH
529
V
O
HOH
1_555
OXIDOREDUCTASE
DOUBLE-STRANDED BETA HELIX, DEMETHYLASE, OXYGENASE, OXIDOREDUCTASE, Structural Genomics, Structural Genomics Consortium, SGC
KDM4D_HUMAN
UNP
1
1
Q6B0I6
METMKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIATPLQQVAS
GRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNSPIYGADISGSLFDENTKQWNLGHLGTI
QDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGA
FLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEARVTFS
MDAFVRILQPERYDLWKRGQDR
1
342
5F5A
1
342
Q6B0I6
A
1
5
346
1
expression tag
TYR
-3
5F5A
A
Q6B0I6
UNP
1
1
expression tag
PHE
-2
5F5A
A
Q6B0I6
UNP
2
1
expression tag
GLN
-1
5F5A
A
Q6B0I6
UNP
3
1
expression tag
SER
0
5F5A
A
Q6B0I6
UNP
4
10
2
4
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
MET
19
A
MET
23
A
PHE
21
A
PHE
25
A
LEU
48
A
LEU
52
A
ILE
51
A
ILE
55
A
PHE
271
A
PHE
275
A
THR
274
A
THR
278
A
TYR
199
A
TYR
203
A
GLY
207
A
GLY
211
A
ASN
288
A
ASN
292
A
PHE
295
A
PHE
299
A
TYR
179
A
TYR
183
A
GLY
183
A
GLY
187
A
ILE
135
A
ILE
139
A
SER
141
A
SER
145
A
LEU
75
A
LEU
79
A
ARG
82
A
ARG
86
A
VAL
85
A
VAL
89
A
LYS
92
A
LYS
96
A
ALA
247
A
ALA
251
A
ILE
249
A
ILE
253
A
LEU
70
A
LEU
74
A
ILE
71
A
ILE
75
A
MET
96
A
MET
100
A
THR
97
A
THR
101
A
THR
188
A
THR
192
A
HIS
192
A
HIS
196
A
TYR
279
A
TYR
283
A
ASN
284
A
ASN
288
A
LYS
210
A
LYS
214
A
VAL
215
A
VAL
219
A
ASN
262
A
ASN
266
A
GLN
266
A
GLN
270
binding site for residue ZN A 401
A
ZN
401
Software
4
binding site for residue NI A 402
A
NI
402
Software
5
binding site for residue 5V0 A 403
A
5V0
403
Software
17
binding site for residue EDO A 404
A
EDO
404
Software
7
binding site for residue EDO A 405
A
EDO
405
Software
5
binding site for residue EDO A 406
A
EDO
406
Software
8
binding site for residue EDO A 407
A
EDO
407
Software
6
binding site for residue EDO A 408
A
EDO
408
Software
7
binding site for residue EDO A 409
A
EDO
409
Software
4
binding site for residue EDO A 410
A
EDO
410
Software
3
binding site for residue EDO A 411
A
EDO
411
Software
5
binding site for residue EDO A 412
A
EDO
412
Software
1
binding site for residue EDO A 413
A
EDO
413
Software
4
binding site for residue EDO A 414
A
EDO
414
Software
6
binding site for residue EDO A 415
A
EDO
415
Software
5
binding site for residue EDO A 416
A
EDO
416
Software
8
binding site for residue SO4 A 417
A
SO4
417
Software
6
binding site for residue SO4 A 418
A
SO4
418
Software
4
binding site for residue SO4 A 419
A
SO4
419
Software
7
binding site for residue SO4 A 420
A
SO4
420
Software
2
A
CYS
238
A
CYS
242
4
1_555
A
HIS
244
A
HIS
248
4
1_555
A
CYS
310
A
CYS
314
4
1_555
A
CYS
312
A
CYS
316
4
1_555
A
HIS
192
A
HIS
196
5
1_555
A
GLU
194
A
GLU
198
5
1_555
A
HIS
280
A
HIS
284
5
1_555
A
5V0
403
D
5V0
5
1_555
A
HOH
529
V
HOH
5
1_555
A
TYR
136
A
TYR
140
17
1_555
A
TYR
181
A
TYR
185
17
1_555
A
PHE
189
A
PHE
193
17
1_555
A
HIS
192
A
HIS
196
17
1_555
A
GLU
194
A
GLU
198
17
1_555
A
SER
200
A
SER
204
17
1_555
A
ASN
202
A
ASN
206
17
1_555
A
LYS
210
A
LYS
214
17
1_555
A
TRP
212
A
TRP
216
17
1_555
A
HIS
280
A
HIS
284
17
1_555
A
ALA
292
A
ALA
296
17
1_555
A
ILE
293
A
ILE
297
17
1_555
A
ASN
294
A
ASN
298
17
1_555
A
NI
402
C
NI
17
1_555
A
HOH
510
V
HOH
17
1_555
A
HOH
529
V
HOH
17
1_555
A
HOH
766
V
HOH
17
1_555
A
GLU
224
A
GLU
228
7
1_555
A
ARG
228
A
ARG
232
7
1_555
A
GLY
239
A
GLY
243
7
1_555
A
ALA
240
A
ALA
244
7
1_555
A
PHE
241
A
PHE
245
7
1_555
A
LEU
242
A
LEU
246
7
1_555
A
HOH
742
V
HOH
7
1_555
A
GLU
27
A
GLU
31
5
1_555
A
TYR
37
A
TYR
41
5
1_555
A
HOH
544
V
HOH
5
1_555
A
HOH
591
V
HOH
5
1_555
A
HOH
592
V
HOH
5
1_555
A
PHE
31
A
PHE
35
8
1_555
A
LYS
150
A
LYS
154
8
1_555
A
GLN
151
A
GLN
155
8
1_555
A
TRP
152
A
TRP
156
8
1_555
A
ASN
153
A
ASN
157
8
1_555
A
HOH
501
V
HOH
8
1_555
A
HOH
523
V
HOH
8
1_555
A
HOH
564
V
HOH
8
1_555
A
LYS
50
A
LYS
54
6
1_555
A
ILE
264
A
ILE
268
6
1_555
A
THR
265
A
THR
269
6
1_555
A
GLU
267
A
GLU
271
6
1_555
A
EDO
415
P
EDO
6
1_555
A
HOH
752
V
HOH
6
1_555
A
ALA
83
A
ALA
87
7
1_555
A
GLY
84
A
GLY
88
7
1_555
A
TRP
126
A
TRP
130
7
1_555
A
SER
250
A
SER
254
7
1_555
A
THR
252
A
THR
256
7
1_555
A
HOH
514
V
HOH
7
1_555
A
HOH
565
V
HOH
7
1_555
A
HIS
103
A
HIS
107
4
1_555
A
ASN
106
A
ASN
110
4
1_555
A
HOH
511
V
HOH
4
1_555
A
HOH
553
V
HOH
4
1_555
A
PRO
251
A
PRO
255
3
1_555
A
LYS
255
A
LYS
259
3
1_555
A
ARG
263
A
ARG
267
3
1_555
A
ILE
20
A
ILE
24
5
1_555
A
PHE
21
A
PHE
25
5
1_555
A
HOH
547
V
HOH
5
7_555
A
HOH
585
V
HOH
5
1_555
A
HOH
782
V
HOH
5
7_555
A
PHE
261
A
PHE
265
1
1_555
A
HIS
22
A
HIS
26
4
1_555
A
GLU
27
A
GLU
31
4
1_555
A
TYR
34
A
TYR
38
4
1_555
A
HOH
520
V
HOH
4
1_555
A
SER
80
A
SER
84
6
1_555
A
GLY
81
A
GLY
85
6
1_555
A
VAL
85
A
VAL
89
6
1_555
A
THR
87
A
THR
91
6
1_555
A
CYS
168
A
CYS
172
6
6_545
A
HOH
503
V
HOH
6
1_555
A
PHE
118
A
PHE
122
5
1_555
A
GLU
122
A
GLU
126
5
1_555
A
ILE
264
A
ILE
268
5
1_555
A
THR
265
A
THR
269
5
1_555
A
EDO
407
H
EDO
5
1_555
A
ASN
13
A
ASN
17
8
7_555
A
GLY
258
A
GLY
262
8
1_555
A
ILE
259
A
ILE
263
8
1_555
A
PRO
260
A
PRO
264
8
1_555
A
HOH
547
V
HOH
8
1_555
A
HOH
597
V
HOH
8
7_555
A
HOH
632
V
HOH
8
1_555
A
HOH
651
V
HOH
8
7_555
A
ARG
60
A
ARG
64
6
1_555
A
GLU
61
A
GLU
65
6
1_555
A
THR
62
A
THR
66
6
1_555
A
ASN
65
A
ASN
69
6
1_555
A
HOH
534
V
HOH
6
1_555
A
HOH
537
V
HOH
6
1_555
A
ARG
123
A
ARG
127
4
1_555
A
LYS
124
A
LYS
128
4
1_555
A
LYS
127
A
LYS
131
4
1_555
A
ASN
128
A
ASN
132
4
1_555
A
PRO
113
A
PRO
117
7
1_555
A
LYS
124
A
LYS
128
7
1_555
A
ASN
128
A
ASN
132
7
1_555
A
TRP
185
A
TRP
189
7
1_555
A
LYS
186
A
LYS
190
7
1_555
A
HOH
513
V
HOH
7
1_555
A
HOH
736
V
HOH
7
1_555
A
TYR
303
A
TYR
307
2
1_555
A
MET
306
A
MET
310
2
1_555
96
P 43 21 2