0.006892 0.000000 0.000000 0.000000 0.006892 0.000000 0.000000 0.000000 0.006892 0.00000 0.00000 0.00000 DiDonato, M. Spraggon, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 145.097 145.097 145.097 C25 H27 F3 N4 O2 472.503 ~{N}-[7-methyl-1-[(3~{R})-1-propanoylazepan-3-yl]benzimidazol-2-yl]-3-(trifluoromethyl)benzamide non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C N 7 N C Y 8 N C N 9 R C N 10 N C N 11 N C N 12 N C N 13 N C N 14 N C N 15 N C Y 16 N C Y 17 N C Y 18 N C Y 19 N C Y 20 N C Y 21 N C Y 22 N N Y 23 N C N 24 N N N 25 N F N 26 N F N 27 N F N 28 N O Y 29 N N N 30 N N N 31 N C N 32 N C N 33 N O N 34 N C N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N N N 83 N C N 84 N N N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N N N 103 S C N 104 N C N 105 N O N 106 N C N 107 N C N 108 N O N 109 N N N 110 N O N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N N N 120 S C N 121 N C N 122 N O N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N N N 136 R C N 137 N C N 138 N O N 139 N C N 140 N S N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N N N 150 S C N 151 N C N 152 N O N 153 N C N 154 N C N 155 N C N 156 N O N 157 N N N 158 N O N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N O N 177 N O N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 N C N 190 N C N 191 N O N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C Y 203 N C Y 204 N N Y 205 N C Y 206 N C Y 207 N N N 208 N O N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N O N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 S C N 227 N C N 228 N C N 229 N C N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N C N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C N 271 N C N 272 N C N 273 N C N 274 N N N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N C N 297 N S N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N C N 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 R C N 370 N O N 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N N Y 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N C N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C N 420 N O N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N C N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing Y 5 N doub Y 6 N sing Y 7 N sing Y 8 N doub Y 9 N doub Y 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N doub N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing Y 23 N sing Y 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N doub Y 29 N sing Y 30 N sing Y 31 N doub Y 32 N sing Y 33 N sing N 34 N sing Y 35 N doub Y 36 N doub Y 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing Y 204 N sing Y 205 N doub Y 206 N doub N 207 N sing Y 208 N sing N 209 N sing Y 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing Y 312 N doub Y 313 N sing Y 314 N sing N 315 N sing Y 316 N doub N 317 N sing Y 318 N doub N 319 N sing Y 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N doub Y 386 N sing Y 387 N sing N 388 N sing Y 389 N sing Y 390 N doub N 391 N sing Y 392 N doub N 393 N sing Y 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing Y 409 N doub Y 410 N sing Y 411 N sing N 412 N sing Y 413 N doub N 414 N sing Y 415 N doub N 416 N sing Y 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 59 6671 6689 10.1021/acs.jmedchem.5b01985 27433829 Discovery of (R,E)-N-(7-Chloro-1-(1-[4-(dimethylamino)but-2-enoyl]azepan-3-yl)-1H-benzo[d]imidazol-2-yl)-2-methylisonicotinamide (EGF816), a Novel, Potent, and WT Sparing Covalent Inhibitor of Oncogenic (L858R, ex19del) and Resistant (T790M) EGFR Mutants for the Treatment of EGFR Mutant Non-Small-Cell Lung Cancers. 2016 10.2210/pdb5fee/pdb pdb_00005fee 100 1 CCD 2011-05-26 ADSC QUANTUM 315r Single crystal, cylindrically bent, Si(220) SINGLE WAVELENGTH M x-ray 1 0.97648 1.0 5.0.3 ALS 0.97648 SYNCHROTRON ALS BEAMLINE 5.0.3 Inhibitor is covalently linked to Cys797. 37391.277 Epidermal growth factor receptor 2.7.10.1 T790M 1 man polymer 472.503 ~{N}-[7-methyl-1-[(3~{R})-1-propanoylazepan-3-yl]benzimidazol-2-yl]-3-(trifluoromethyl)benzamide 1 syn non-polymer 18.015 water 11 nat water Proto-oncogene c-ErbB-1,Receptor tyrosine-protein kinase erbB-1 no no GGEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV CRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKIT DFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLP QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLPSPTDSNFYRALMDEEDMDDVVDAD EYLIPQQG GGEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV CRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKIT DFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLP QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLPSPTDSNFYRALMDEEDMDDVVDAD EYLIPQQG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 328 EGFR, ERBB, ERBB1, HER1 9606 Homo sapiens 7108 Spodoptera frugiperda Sf9 Biological sequence pFastBacHTc 3.41 64 Hexagonal crystals in 1-2 weeks. VAPOR DIFFUSION, SITTING DROP 7.5 1.2M potassium sodium tartrate, 0.1M HEPES pH 7.5 294 chem_comp_atom chem_comp_bond citation database_2 pdbx_initial_refinement_model pdbx_struct_oper_list repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2016-07-27 1 1 2016-08-10 1 2 2023-09-27 _citation.journal_id_CSD _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_oper_list.symmetry_operation Wild-type version of EGFR kinase domain complexed with the same inhibitor. N RCSB Y RCSB 2015-12-16 REL REL 5X4 ~{N}-[7-methyl-1-[(3~{R})-1-propanoylazepan-3-yl]benzimidazol-2-yl]-3-(trifluoromethyl)benzamide HOH water 2JIT PDB experimental model LI1 1 2 5X4 5X4 1101 A HOH 10 3 HOH HOH 1201 A HOH 6 3 HOH HOH 1202 A HOH 1 3 HOH HOH 1203 A HOH 5 3 HOH HOH 1204 A HOH 7 3 HOH HOH 1205 A HOH 3 3 HOH HOH 1206 A HOH 4 3 HOH HOH 1207 A HOH 11 3 HOH HOH 1208 A HOH 8 3 HOH HOH 1209 A HOH 2 3 HOH HOH 1210 A HOH 9 3 HOH HOH 1211 A n 1 695 A n 2 696 A GLU 697 n 3 GLU 697 A ALA 698 n 4 ALA 698 A PRO 699 n 5 PRO 699 A ASN 700 n 6 ASN 700 A GLN 701 n 7 GLN 701 A ALA 702 n 8 ALA 702 A LEU 703 n 9 LEU 703 A LEU 704 n 10 LEU 704 A ARG 705 n 11 ARG 705 A ILE 706 n 12 ILE 706 A LEU 707 n 13 LEU 707 A LYS 708 n 14 LYS 708 A GLU 709 n 15 GLU 709 A THR 710 n 16 THR 710 A GLU 711 n 17 GLU 711 A PHE 712 n 18 PHE 712 A LYS 713 n 19 LYS 713 A LYS 714 n 20 LYS 714 A ILE 715 n 21 ILE 715 A LYS 716 n 22 LYS 716 A VAL 717 n 23 VAL 717 A LEU 718 n 24 LEU 718 A GLY 719 n 25 GLY 719 A SER 720 n 26 SER 720 A n 27 721 A n 28 722 A n 29 723 A n 30 724 A THR 725 n 31 THR 725 A VAL 726 n 32 VAL 726 A TYR 727 n 33 TYR 727 A LYS 728 n 34 LYS 728 A GLY 729 n 35 GLY 729 A LEU 730 n 36 LEU 730 A TRP 731 n 37 TRP 731 A ILE 732 n 38 ILE 732 A PRO 733 n 39 PRO 733 A GLU 734 n 40 GLU 734 A GLY 735 n 41 GLY 735 A GLU 736 n 42 GLU 736 A LYS 737 n 43 LYS 737 A VAL 738 n 44 VAL 738 A LYS 739 n 45 LYS 739 A ILE 740 n 46 ILE 740 A PRO 741 n 47 PRO 741 A VAL 742 n 48 VAL 742 A ALA 743 n 49 ALA 743 A ILE 744 n 50 ILE 744 A LYS 745 n 51 LYS 745 A GLU 746 n 52 GLU 746 A n 53 747 A n 54 748 A n 55 749 A n 56 750 A n 57 751 A SER 752 n 58 SER 752 A PRO 753 n 59 PRO 753 A LYS 754 n 60 LYS 754 A ALA 755 n 61 ALA 755 A ASN 756 n 62 ASN 756 A LYS 757 n 63 LYS 757 A GLU 758 n 64 GLU 758 A ILE 759 n 65 ILE 759 A LEU 760 n 66 LEU 760 A ASP 761 n 67 ASP 761 A GLU 762 n 68 GLU 762 A ALA 763 n 69 ALA 763 A TYR 764 n 70 TYR 764 A VAL 765 n 71 VAL 765 A MET 766 n 72 MET 766 A ALA 767 n 73 ALA 767 A SER 768 n 74 SER 768 A VAL 769 n 75 VAL 769 A ASP 770 n 76 ASP 770 A ASN 771 n 77 ASN 771 A PRO 772 n 78 PRO 772 A HIS 773 n 79 HIS 773 A VAL 774 n 80 VAL 774 A CYS 775 n 81 CYS 775 A ARG 776 n 82 ARG 776 A LEU 777 n 83 LEU 777 A LEU 778 n 84 LEU 778 A GLY 779 n 85 GLY 779 A ILE 780 n 86 ILE 780 A CYS 781 n 87 CYS 781 A LEU 782 n 88 LEU 782 A THR 783 n 89 THR 783 A SER 784 n 90 SER 784 A THR 785 n 91 THR 785 A VAL 786 n 92 VAL 786 A GLN 787 n 93 GLN 787 A LEU 788 n 94 LEU 788 A ILE 789 n 95 ILE 789 A MET 790 n 96 MET 790 A GLN 791 n 97 GLN 791 A LEU 792 n 98 LEU 792 A MET 793 n 99 MET 793 A PRO 794 n 100 PRO 794 A PHE 795 n 101 PHE 795 A GLY 796 n 102 GLY 796 A CYS 797 n 103 CYS 797 A LEU 798 n 104 LEU 798 A LEU 799 n 105 LEU 799 A ASP 800 n 106 ASP 800 A TYR 801 n 107 TYR 801 A VAL 802 n 108 VAL 802 A ARG 803 n 109 ARG 803 A GLU 804 n 110 GLU 804 A HIS 805 n 111 HIS 805 A LYS 806 n 112 LYS 806 A ASP 807 n 113 ASP 807 A ASN 808 n 114 ASN 808 A ILE 809 n 115 ILE 809 A GLY 810 n 116 GLY 810 A SER 811 n 117 SER 811 A GLN 812 n 118 GLN 812 A TYR 813 n 119 TYR 813 A LEU 814 n 120 LEU 814 A LEU 815 n 121 LEU 815 A ASN 816 n 122 ASN 816 A TRP 817 n 123 TRP 817 A CYS 818 n 124 CYS 818 A VAL 819 n 125 VAL 819 A GLN 820 n 126 GLN 820 A ILE 821 n 127 ILE 821 A ALA 822 n 128 ALA 822 A LYS 823 n 129 LYS 823 A GLY 824 n 130 GLY 824 A MET 825 n 131 MET 825 A ASN 826 n 132 ASN 826 A TYR 827 n 133 TYR 827 A LEU 828 n 134 LEU 828 A GLU 829 n 135 GLU 829 A ASP 830 n 136 ASP 830 A ARG 831 n 137 ARG 831 A ARG 832 n 138 ARG 832 A LEU 833 n 139 LEU 833 A VAL 834 n 140 VAL 834 A HIS 835 n 141 HIS 835 A ARG 836 n 142 ARG 836 A ASP 837 n 143 ASP 837 A LEU 838 n 144 LEU 838 A ALA 839 n 145 ALA 839 A ALA 840 n 146 ALA 840 A ARG 841 n 147 ARG 841 A ASN 842 n 148 ASN 842 A VAL 843 n 149 VAL 843 A LEU 844 n 150 LEU 844 A VAL 845 n 151 VAL 845 A LYS 846 n 152 LYS 846 A THR 847 n 153 THR 847 A PRO 848 n 154 PRO 848 A GLN 849 n 155 GLN 849 A HIS 850 n 156 HIS 850 A VAL 851 n 157 VAL 851 A LYS 852 n 158 LYS 852 A ILE 853 n 159 ILE 853 A THR 854 n 160 THR 854 A ASP 855 n 161 ASP 855 A PHE 856 n 162 PHE 856 A GLY 857 n 163 GLY 857 A LEU 858 n 164 LEU 858 A ALA 859 n 165 ALA 859 A LYS 860 n 166 LYS 860 A LEU 861 n 167 LEU 861 A LEU 862 n 168 LEU 862 A n 169 863 A n 170 864 A n 171 865 A n 172 866 A n 173 867 A GLU 868 n 174 GLU 868 A TYR 869 n 175 TYR 869 A HIS 870 n 176 HIS 870 A ALA 871 n 177 ALA 871 A GLU 872 n 178 GLU 872 A GLY 873 n 179 GLY 873 A GLY 874 n 180 GLY 874 A LYS 875 n 181 LYS 875 A VAL 876 n 182 VAL 876 A PRO 877 n 183 PRO 877 A ILE 878 n 184 ILE 878 A LYS 879 n 185 LYS 879 A TRP 880 n 186 TRP 880 A MET 881 n 187 MET 881 A ALA 882 n 188 ALA 882 A LEU 883 n 189 LEU 883 A GLU 884 n 190 GLU 884 A SER 885 n 191 SER 885 A ILE 886 n 192 ILE 886 A LEU 887 n 193 LEU 887 A HIS 888 n 194 HIS 888 A ARG 889 n 195 ARG 889 A ILE 890 n 196 ILE 890 A TYR 891 n 197 TYR 891 A THR 892 n 198 THR 892 A HIS 893 n 199 HIS 893 A GLN 894 n 200 GLN 894 A SER 895 n 201 SER 895 A ASP 896 n 202 ASP 896 A VAL 897 n 203 VAL 897 A TRP 898 n 204 TRP 898 A SER 899 n 205 SER 899 A TYR 900 n 206 TYR 900 A GLY 901 n 207 GLY 901 A VAL 902 n 208 VAL 902 A THR 903 n 209 THR 903 A VAL 904 n 210 VAL 904 A TRP 905 n 211 TRP 905 A GLU 906 n 212 GLU 906 A LEU 907 n 213 LEU 907 A MET 908 n 214 MET 908 A THR 909 n 215 THR 909 A PHE 910 n 216 PHE 910 A GLY 911 n 217 GLY 911 A SER 912 n 218 SER 912 A LYS 913 n 219 LYS 913 A PRO 914 n 220 PRO 914 A TYR 915 n 221 TYR 915 A ASP 916 n 222 ASP 916 A GLY 917 n 223 GLY 917 A ILE 918 n 224 ILE 918 A PRO 919 n 225 PRO 919 A ALA 920 n 226 ALA 920 A SER 921 n 227 SER 921 A GLU 922 n 228 GLU 922 A ILE 923 n 229 ILE 923 A SER 924 n 230 SER 924 A SER 925 n 231 SER 925 A ILE 926 n 232 ILE 926 A LEU 927 n 233 LEU 927 A GLU 928 n 234 GLU 928 A LYS 929 n 235 LYS 929 A GLY 930 n 236 GLY 930 A GLU 931 n 237 GLU 931 A ARG 932 n 238 ARG 932 A LEU 933 n 239 LEU 933 A PRO 934 n 240 PRO 934 A GLN 935 n 241 GLN 935 A PRO 936 n 242 PRO 936 A PRO 937 n 243 PRO 937 A ILE 938 n 244 ILE 938 A CYS 939 n 245 CYS 939 A THR 940 n 246 THR 940 A ILE 941 n 247 ILE 941 A ASP 942 n 248 ASP 942 A VAL 943 n 249 VAL 943 A TYR 944 n 250 TYR 944 A MET 945 n 251 MET 945 A ILE 946 n 252 ILE 946 A MET 947 n 253 MET 947 A VAL 948 n 254 VAL 948 A LYS 949 n 255 LYS 949 A CYS 950 n 256 CYS 950 A TRP 951 n 257 TRP 951 A MET 952 n 258 MET 952 A ILE 953 n 259 ILE 953 A ASP 954 n 260 ASP 954 A ALA 955 n 261 ALA 955 A ASP 956 n 262 ASP 956 A SER 957 n 263 SER 957 A ARG 958 n 264 ARG 958 A PRO 959 n 265 PRO 959 A LYS 960 n 266 LYS 960 A PHE 961 n 267 PHE 961 A ARG 962 n 268 ARG 962 A GLU 963 n 269 GLU 963 A LEU 964 n 270 LEU 964 A ILE 965 n 271 ILE 965 A ILE 966 n 272 ILE 966 A GLU 967 n 273 GLU 967 A PHE 968 n 274 PHE 968 A SER 969 n 275 SER 969 A LYS 970 n 276 LYS 970 A MET 971 n 277 MET 971 A ALA 972 n 278 ALA 972 A ARG 973 n 279 ARG 973 A ASP 974 n 280 ASP 974 A PRO 975 n 281 PRO 975 A GLN 976 n 282 GLN 976 A ARG 977 n 283 ARG 977 A TYR 978 n 284 TYR 978 A LEU 979 n 285 LEU 979 A VAL 980 n 286 VAL 980 A ILE 981 n 287 ILE 981 A GLN 982 n 288 GLN 982 A GLY 983 n 289 GLY 983 A ASP 984 n 290 ASP 984 A GLU 985 n 291 GLU 985 A n 292 986 A n 293 987 A n 294 988 A n 295 989 A n 296 990 A n 297 991 A n 298 992 A n 299 993 A n 300 994 A n 301 995 A n 302 996 A n 303 997 A n 304 998 A n 305 999 A n 306 1000 A n 307 1001 A n 308 1002 A n 309 1003 A n 310 1004 A n 311 1005 A n 312 1006 A MET 1007 n 313 MET 1007 A ASP 1008 n 314 ASP 1008 A ASP 1009 n 315 ASP 1009 A VAL 1010 n 316 VAL 1010 A VAL 1011 n 317 VAL 1011 A ASP 1012 n 318 ASP 1012 A ALA 1013 n 319 ALA 1013 A ASP 1014 n 320 ASP 1014 A GLU 1015 n 321 GLU 1015 A TYR 1016 n 322 TYR 1016 A LEU 1017 n 323 LEU 1017 A ILE 1018 n 324 ILE 1018 A n 325 1019 A n 326 1020 A n 327 1021 A n 328 1022 A 0.6476 0.6479 -0.7167 0.4682 -0.6631 1.0763 0.1014 0.0762 0.0407 0.0097 -0.0612 -0.1023 -0.2317 0.2944 0.0032 0.4693 -0.1413 -0.0278 0.5988 0.0083 0.5252 refined -52.8056 8.0955 -31.0190 X-RAY DIFFRACTION 0.9846 0.7161 0.0075 1.5577 -0.7669 0.7040 -0.0972 -0.0441 0.1177 -0.1272 -0.1308 -0.1660 0.0277 0.2242 -0.0031 0.4376 -0.0368 0.0546 0.4872 0.0513 0.3254 refined -58.1311 -6.8530 -25.3971 X-RAY DIFFRACTION 0.2450 0.9040 -0.7077 2.4940 -1.2771 1.8533 -0.1508 -0.1254 -0.1315 -0.2087 -0.1914 -0.3619 0.3934 0.2158 -0.4057 0.4613 -0.0084 0.0970 0.4199 0.0725 0.4002 refined -61.6506 -18.8384 -21.4722 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resid 697 through 767 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 768 through 882 ) X-RAY DIFFRACTION 3 chain 'A' and (resid 883 through 1018 ) author_and_software_defined_assembly PISA 1 monomeric 0 0 14520 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 718 A N LEU 24 A O VAL 726 A O VAL 32 A N TRP 731 A N TRP 37 A O ILE 740 A O ILE 46 A N ALA 743 A N ALA 49 A O MET 790 A O MET 96 A O ILE 789 A O ILE 95 A N GLY 779 A N GLY 85 A N VAL 834 A N VAL 140 A O LYS 860 A O LYS 166 A N LEU 844 A N LEU 150 A O LYS 852 A O LYS 158 1 A GLY 695 A GLY 1 1 Y 1 A GLY 696 A GLY 2 1 Y 1 A GLY 721 A GLY 27 1 Y 1 A ALA 722 A ALA 28 1 Y 1 A PHE 723 A PHE 29 1 Y 1 A GLY 724 A GLY 30 1 Y 1 A LEU 747 A LEU 53 1 Y 1 A ARG 748 A ARG 54 1 Y 1 A GLU 749 A GLU 55 1 Y 1 A ALA 750 A ALA 56 1 Y 1 A THR 751 A THR 57 1 Y 1 A GLY 863 A GLY 169 1 Y 1 A ALA 864 A ALA 170 1 Y 1 A GLU 865 A GLU 171 1 Y 1 A GLU 866 A GLU 172 1 Y 1 A LYS 867 A LYS 173 1 Y 1 A ARG 986 A ARG 292 1 Y 1 A MET 987 A MET 293 1 Y 1 A HIS 988 A HIS 294 1 Y 1 A LEU 989 A LEU 295 1 Y 1 A PRO 990 A PRO 296 1 Y 1 A SER 991 A SER 297 1 Y 1 A PRO 992 A PRO 298 1 Y 1 A THR 993 A THR 299 1 Y 1 A ASP 994 A ASP 300 1 Y 1 A SER 995 A SER 301 1 Y 1 A ASN 996 A ASN 302 1 Y 1 A PHE 997 A PHE 303 1 Y 1 A TYR 998 A TYR 304 1 Y 1 A ARG 999 A ARG 305 1 Y 1 A ALA 1000 A ALA 306 1 Y 1 A LEU 1001 A LEU 307 1 Y 1 A MET 1002 A MET 308 1 Y 1 A ASP 1003 A ASP 309 1 Y 1 A GLU 1004 A GLU 310 1 Y 1 A GLU 1005 A GLU 311 1 Y 1 A ASP 1006 A ASP 312 1 Y 1 A PRO 1019 A PRO 325 1 Y 1 A GLN 1020 A GLN 326 1 Y 1 A GLN 1021 A GLN 327 1 Y 1 A GLY 1022 A GLY 328 1 Y 1 A A OG1 O THR THR 783 785 1.84 1 A A NH1 O ARG TRP 932 951 1.93 1 -17.44 1.70 111.00 93.56 A A A CB CG CD1 LEU LEU LEU 861 861 861 N 1 -13.60 2.20 111.40 97.80 A A A CG1 CB CG2 ILE ILE ILE 878 878 878 N 1 -7.78 0.50 120.30 112.52 A A A NE CZ NH1 ARG ARG ARG 932 932 932 N 1 5.24 0.50 120.30 125.54 A A A NE CZ NH2 ARG ARG ARG 932 932 932 N 1 A ARG 836 72.54 -3.53 1 A ASP 837 -140.02 39.22 1 A PHE 856 -115.76 70.34 1 A GLU 872 -109.64 -78.61 1 A ILE 878 66.26 -53.45 1 A ASP 974 -150.61 72.56 0.2293 0.1881 0.1923 2.700 59.236 1407 14113 9.97 99.92 0.39 1 FREE R-VALUE 1.35 MOLECULAR REPLACEMENT 25.67 0.90 1.11 2JIT ML FLAT BULK SOLVENT MODEL 2.700 59.236 11 2353 34 0 2308 0.015 2393 1.443 3238 18.820 1451 0.072 361 0.008 401 0.3555 0.2745 2.7965 137 1265 100.00 0.3461 0.2279 2.9084 130 1243 100.00 0.2859 0.2267 3.0408 152 1250 100.00 0.3006 0.2380 3.2011 128 1262 100.00 0.2882 0.2289 3.4016 138 1270 100.00 0.2554 0.1988 3.6643 151 1260 100.00 0.1974 0.1676 4.0329 127 1279 100.00 0.1893 0.1479 4.6163 147 1265 100.00 0.1977 0.1672 5.8153 154 1276 100.00 0.2148 0.1912 59.2498 143 1336 100.00 76 2.7 80 5FEE 14118 0.077 1 23.8 6.1 100 0.787 2.7 2.8 2.19 1 6.2 100 refinement PHENIX (1.10.1_2155: ???) data reduction HKL-2000 data scaling SCALEPACK phasing PHASER EGFR kinase domain T790M mutant in complex with a covalent aminobenzimidazole inhibitor. 1 N N 2 N N 3 N N A LYS 708 A LYS 14 HELX_P A THR 710 A THR 16 5 AA1 3 A PRO 753 A PRO 59 HELX_P A SER 768 A SER 74 1 AA2 16 A CYS 797 A CYS 103 HELX_P A LYS 806 A LYS 112 1 AA3 10 A ASP 807 A ASP 113 HELX_P A ILE 809 A ILE 115 5 AA4 3 A GLY 810 A GLY 116 HELX_P A ARG 831 A ARG 137 1 AA5 22 A ALA 839 A ALA 145 HELX_P A ARG 841 A ARG 147 5 AA6 3 A ALA 882 A ALA 188 HELX_P A ARG 889 A ARG 195 1 AA7 8 A THR 892 A THR 198 HELX_P A THR 909 A THR 215 1 AA8 18 A PRO 919 A PRO 225 HELX_P A LYS 929 A LYS 235 1 AA9 11 A THR 940 A THR 246 HELX_P A CYS 950 A CYS 256 1 AB1 11 A ASP 954 A ASP 260 HELX_P A ARG 958 A ARG 264 5 AB2 5 A LYS 960 A LYS 266 HELX_P A ARG 973 A ARG 279 1 AB3 14 A ASP 974 A ASP 280 HELX_P A TYR 978 A TYR 284 5 AB4 5 A ASP 1012 A ASP 318 HELX_P A TYR 1016 A TYR 322 5 AB5 5 covale 1.835 none A CYS 797 A SG CYS 103 1_555 A 5X4 1101 B C32 5X4 1_555 TRANSFERASE/TRANSFERASE INHIBITOR Kinase, Inhibitor, Covalently bound, T790M, TRANSFERASE-TRANSFERASE INHIBITOR complex EGFR_HUMAN UNP 1 696 P00533 GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC RLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQ PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLPSPTDSNFYRALMDEEDMDDVVDADE YLIPQQG 696 1022 5FEE 696 1022 P00533 A 1 2 328 1 expression tag GLY 695 5FEE A P00533 UNP 1 1 THR engineered mutation MET 790 5FEE A P00533 UNP 790 96 5 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 712 A PHE 18 A GLY 719 A GLY 25 A VAL 726 A VAL 32 A TRP 731 A TRP 37 A ILE 740 A ILE 46 A LYS 745 A LYS 51 A GLN 787 A GLN 93 A GLN 791 A GLN 97 A LEU 777 A LEU 83 A CYS 781 A CYS 87 A LEU 833 A LEU 139 A VAL 834 A VAL 140 A LYS 860 A LYS 166 A LEU 861 A LEU 167 A VAL 843 A VAL 149 A THR 847 A THR 153 A HIS 850 A HIS 156 A ILE 853 A ILE 159 binding site for residue 5X4 A 1101 A 5X4 1101 Software 11 A VAL 726 A VAL 32 11 1_555 A ALA 743 A ALA 49 11 1_555 A LYS 745 A LYS 51 11 1_555 A CYS 775 A CYS 81 11 1_555 A MET 790 A MET 96 11 1_555 A GLN 791 A GLN 97 11 1_555 A MET 793 A MET 99 11 1_555 A PRO 794 A PRO 100 11 1_555 A CYS 797 A CYS 103 11 1_555 A ASP 800 A ASP 106 11 1_555 A THR 854 A THR 160 11 1_555 197 I 2 3