0.014809 0.000000 0.000000 0.000000 0.011296 0.000000 0.000000 0.000000 0.011066 0.00000 0.00000 0.00000 Lee, I. Kim, H. Yun, J.H. Lee, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 67.525 88.529 90.368 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing UK Sci.Rep. 2045-2322 6 36818 10.1038/SREP36818 27830760 New Structural Insight of C-Terminal Region of Syntenin-1, Enhancing the Molecular Dimerization and Inhibitory Function Related on Syndecan-4 Signaling. 2016 10.2210/pdb5g1d/pdb pdb_00005g1d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 77 1 CCD SINGLE WAVELENGTH M x-ray 1 0.97952 1.0 5C (4A) PAL/PLS 0.97952 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 21824.301 SYNTENIN-1 2 man polymer 911.954 SYNDECAN-4 195-202 2 syn polymer SYNDECAN-BINDING PROTEIN 1 no no GSAMADIGAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKV LKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHICEINGQNVIGLKDAQIADI LSTAGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV GSAMADIGAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKV LKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHICEINGQNVIGLKDAQIADI LSTAGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV A,B polypeptide(L) no no APTNEFYA APTNEFYA C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n NORWAY RAT sample 10116 RATTUS NORVEGICUS 469008 ESCHERICHIA COLI BL21(DE3) PET21B 1 2.96 58.49 NONE 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 M TRIS HYDROCHLORIDE (PH 8.5), 30% (W/V) POLYETHYLENE GLYCOL 4000 software chem_comp_atom chem_comp_bond database_2 pdbx_database_status repository Initial release Other Refinement description Data collection Database references Other 1 0 2016-11-23 1 1 2017-03-29 1 2 2017-07-12 1 3 2024-05-08 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf THE COMPLEX STRUCTURE OF SYNTENIN-1 PDZ DOMAIN WITH C-TERMINAL EXTENSION PDBE Y PDBE 2016-03-25 REL REL 10116 NORWAY RAT RATTUS NORVEGICUS sample n 1 100 A n 2 101 A n 3 102 A n 4 103 A n 5 104 A n 6 105 A n 7 106 A n 8 107 A n 9 108 A n 10 109 A n 11 110 A n 12 111 A GLN 112 n 13 GLN 112 A GLY 113 n 14 GLY 113 A ILE 114 n 15 ILE 114 A ARG 115 n 16 ARG 115 A GLU 116 n 17 GLU 116 A VAL 117 n 18 VAL 117 A ILE 118 n 19 ILE 118 A LEU 119 n 20 LEU 119 A CYS 120 n 21 CYS 120 A LYS 121 n 22 LYS 121 A ASP 122 n 23 ASP 122 A GLN 123 n 24 GLN 123 A ASP 124 n 25 ASP 124 A GLY 125 n 26 GLY 125 A LYS 126 n 27 LYS 126 A ILE 127 n 28 ILE 127 A GLY 128 n 29 GLY 128 A LEU 129 n 30 LEU 129 A ARG 130 n 31 ARG 130 A LEU 131 n 32 LEU 131 A LYS 132 n 33 LYS 132 A SER 133 n 34 SER 133 A VAL 134 n 35 VAL 134 A ASP 135 n 36 ASP 135 A ASN 136 n 37 ASN 136 A GLY 137 n 38 GLY 137 A ILE 138 n 39 ILE 138 A PHE 139 n 40 PHE 139 A VAL 140 n 41 VAL 140 A GLN 141 n 42 GLN 141 A LEU 142 n 43 LEU 142 A VAL 143 n 44 VAL 143 A GLN 144 n 45 GLN 144 A ALA 145 n 46 ALA 145 A ASN 146 n 47 ASN 146 A SER 147 n 48 SER 147 A PRO 148 n 49 PRO 148 A ALA 149 n 50 ALA 149 A SER 150 n 51 SER 150 A LEU 151 n 52 LEU 151 A VAL 152 n 53 VAL 152 A GLY 153 n 54 GLY 153 A LEU 154 n 55 LEU 154 A ARG 155 n 56 ARG 155 A PHE 156 n 57 PHE 156 A GLY 157 n 58 GLY 157 A ASP 158 n 59 ASP 158 A GLN 159 n 60 GLN 159 A VAL 160 n 61 VAL 160 A LEU 161 n 62 LEU 161 A GLN 162 n 63 GLN 162 A ILE 163 n 64 ILE 163 A ASN 164 n 65 ASN 164 A GLY 165 n 66 GLY 165 A GLU 166 n 67 GLU 166 A ASN 167 n 68 ASN 167 A CYS 168 n 69 CYS 168 A ALA 169 n 70 ALA 169 A GLY 170 n 71 GLY 170 A TRP 171 n 72 TRP 171 A SER 172 n 73 SER 172 A SER 173 n 74 SER 173 A ASP 174 n 75 ASP 174 A LYS 175 n 76 LYS 175 A ALA 176 n 77 ALA 176 A HIS 177 n 78 HIS 177 A LYS 178 n 79 LYS 178 A VAL 179 n 80 VAL 179 A LEU 180 n 81 LEU 180 A LYS 181 n 82 LYS 181 A GLN 182 n 83 GLN 182 A ALA 183 n 84 ALA 183 A PHE 184 n 85 PHE 184 A n 86 185 A n 87 186 A LYS 187 n 88 LYS 187 A ILE 188 n 89 ILE 188 A THR 189 n 90 THR 189 A MET 190 n 91 MET 190 A THR 191 n 92 THR 191 A ILE 192 n 93 ILE 192 A ARG 193 n 94 ARG 193 A ASP 194 n 95 ASP 194 A ARG 195 n 96 ARG 195 A PRO 196 n 97 PRO 196 A PHE 197 n 98 PHE 197 A GLU 198 n 99 GLU 198 A ARG 199 n 100 ARG 199 A THR 200 n 101 THR 200 A VAL 201 n 102 VAL 201 A THR 202 n 103 THR 202 A MET 203 n 104 MET 203 A HIS 204 n 105 HIS 204 A LYS 205 n 106 LYS 205 A ASP 206 n 107 ASP 206 A SER 207 n 108 SER 207 A SER 208 n 109 SER 208 A GLY 209 n 110 GLY 209 A HIS 210 n 111 HIS 210 A VAL 211 n 112 VAL 211 A GLY 212 n 113 GLY 212 A PHE 213 n 114 PHE 213 A ILE 214 n 115 ILE 214 A PHE 215 n 116 PHE 215 A LYS 216 n 117 LYS 216 A SER 217 n 118 SER 217 A GLY 218 n 119 GLY 218 A LYS 219 n 120 LYS 219 A ILE 220 n 121 ILE 220 A THR 221 n 122 THR 221 A SER 222 n 123 SER 222 A ILE 223 n 124 ILE 223 A VAL 224 n 125 VAL 224 A LYS 225 n 126 LYS 225 A ASP 226 n 127 ASP 226 A SER 227 n 128 SER 227 A SER 228 n 129 SER 228 A ALA 229 n 130 ALA 229 A ALA 230 n 131 ALA 230 A ARG 231 n 132 ARG 231 A ASN 232 n 133 ASN 232 A GLY 233 n 134 GLY 233 A LEU 234 n 135 LEU 234 A LEU 235 n 136 LEU 235 A THR 236 n 137 THR 236 A ASP 237 n 138 ASP 237 A HIS 238 n 139 HIS 238 A HIS 239 n 140 HIS 239 A ILE 240 n 141 ILE 240 A CYS 241 n 142 CYS 241 A GLU 242 n 143 GLU 242 A ILE 243 n 144 ILE 243 A ASN 244 n 145 ASN 244 A GLY 245 n 146 GLY 245 A GLN 246 n 147 GLN 246 A ASN 247 n 148 ASN 247 A VAL 248 n 149 VAL 248 A ILE 249 n 150 ILE 249 A GLY 250 n 151 GLY 250 A LEU 251 n 152 LEU 251 A LYS 252 n 153 LYS 252 A ASP 253 n 154 ASP 253 A ALA 254 n 155 ALA 254 A GLN 255 n 156 GLN 255 A ILE 256 n 157 ILE 256 A ALA 257 n 158 ALA 257 A ASP 258 n 159 ASP 258 A ILE 259 n 160 ILE 259 A LEU 260 n 161 LEU 260 A SER 261 n 162 SER 261 A THR 262 n 163 THR 262 A ALA 263 n 164 ALA 263 A GLY 264 n 165 GLY 264 A THR 265 n 166 THR 265 A VAL 266 n 167 VAL 266 A VAL 267 n 168 VAL 267 A THR 268 n 169 THR 268 A ILE 269 n 170 ILE 269 A THR 270 n 171 THR 270 A ILE 271 n 172 ILE 271 A MET 272 n 173 MET 272 A PRO 273 n 174 PRO 273 A ALA 274 n 175 ALA 274 A PHE 275 n 176 PHE 275 A ILE 276 n 177 ILE 276 A PHE 277 n 178 PHE 277 A GLU 278 n 179 GLU 278 A HIS 279 n 180 HIS 279 A ILE 280 n 181 ILE 280 A ILE 281 n 182 ILE 281 A n 183 282 A n 184 283 A n 185 284 A n 186 285 A n 187 286 A n 188 287 A n 189 288 A n 190 289 A n 191 290 A n 192 291 A n 193 292 A n 194 293 A n 195 294 A n 196 295 A n 197 296 A n 198 297 A n 199 298 A n 200 299 A n 201 300 A n 1 100 B n 2 101 B n 3 102 B n 4 103 B n 5 104 B n 6 105 B n 7 106 B n 8 107 B n 9 108 B n 10 109 B n 11 110 B n 12 111 B GLN 112 n 13 GLN 112 B GLY 113 n 14 GLY 113 B ILE 114 n 15 ILE 114 B ARG 115 n 16 ARG 115 B GLU 116 n 17 GLU 116 B VAL 117 n 18 VAL 117 B ILE 118 n 19 ILE 118 B LEU 119 n 20 LEU 119 B CYS 120 n 21 CYS 120 B LYS 121 n 22 LYS 121 B ASP 122 n 23 ASP 122 B GLN 123 n 24 GLN 123 B ASP 124 n 25 ASP 124 B GLY 125 n 26 GLY 125 B LYS 126 n 27 LYS 126 B ILE 127 n 28 ILE 127 B GLY 128 n 29 GLY 128 B LEU 129 n 30 LEU 129 B ARG 130 n 31 ARG 130 B LEU 131 n 32 LEU 131 B LYS 132 n 33 LYS 132 B SER 133 n 34 SER 133 B VAL 134 n 35 VAL 134 B ASP 135 n 36 ASP 135 B ASN 136 n 37 ASN 136 B GLY 137 n 38 GLY 137 B ILE 138 n 39 ILE 138 B PHE 139 n 40 PHE 139 B VAL 140 n 41 VAL 140 B GLN 141 n 42 GLN 141 B LEU 142 n 43 LEU 142 B VAL 143 n 44 VAL 143 B GLN 144 n 45 GLN 144 B ALA 145 n 46 ALA 145 B ASN 146 n 47 ASN 146 B SER 147 n 48 SER 147 B PRO 148 n 49 PRO 148 B ALA 149 n 50 ALA 149 B SER 150 n 51 SER 150 B LEU 151 n 52 LEU 151 B VAL 152 n 53 VAL 152 B GLY 153 n 54 GLY 153 B LEU 154 n 55 LEU 154 B ARG 155 n 56 ARG 155 B PHE 156 n 57 PHE 156 B GLY 157 n 58 GLY 157 B ASP 158 n 59 ASP 158 B GLN 159 n 60 GLN 159 B VAL 160 n 61 VAL 160 B LEU 161 n 62 LEU 161 B GLN 162 n 63 GLN 162 B ILE 163 n 64 ILE 163 B ASN 164 n 65 ASN 164 B GLY 165 n 66 GLY 165 B GLU 166 n 67 GLU 166 B ASN 167 n 68 ASN 167 B CYS 168 n 69 CYS 168 B ALA 169 n 70 ALA 169 B GLY 170 n 71 GLY 170 B TRP 171 n 72 TRP 171 B SER 172 n 73 SER 172 B SER 173 n 74 SER 173 B ASP 174 n 75 ASP 174 B LYS 175 n 76 LYS 175 B ALA 176 n 77 ALA 176 B HIS 177 n 78 HIS 177 B LYS 178 n 79 LYS 178 B VAL 179 n 80 VAL 179 B LEU 180 n 81 LEU 180 B LYS 181 n 82 LYS 181 B GLN 182 n 83 GLN 182 B ALA 183 n 84 ALA 183 B PHE 184 n 85 PHE 184 B n 86 185 B n 87 186 B n 88 187 B ILE 188 n 89 ILE 188 B THR 189 n 90 THR 189 B MET 190 n 91 MET 190 B THR 191 n 92 THR 191 B ILE 192 n 93 ILE 192 B ARG 193 n 94 ARG 193 B ASP 194 n 95 ASP 194 B ARG 195 n 96 ARG 195 B PRO 196 n 97 PRO 196 B PHE 197 n 98 PHE 197 B GLU 198 n 99 GLU 198 B ARG 199 n 100 ARG 199 B THR 200 n 101 THR 200 B VAL 201 n 102 VAL 201 B THR 202 n 103 THR 202 B MET 203 n 104 MET 203 B HIS 204 n 105 HIS 204 B LYS 205 n 106 LYS 205 B ASP 206 n 107 ASP 206 B SER 207 n 108 SER 207 B SER 208 n 109 SER 208 B GLY 209 n 110 GLY 209 B HIS 210 n 111 HIS 210 B VAL 211 n 112 VAL 211 B GLY 212 n 113 GLY 212 B PHE 213 n 114 PHE 213 B ILE 214 n 115 ILE 214 B PHE 215 n 116 PHE 215 B LYS 216 n 117 LYS 216 B SER 217 n 118 SER 217 B GLY 218 n 119 GLY 218 B LYS 219 n 120 LYS 219 B ILE 220 n 121 ILE 220 B THR 221 n 122 THR 221 B SER 222 n 123 SER 222 B ILE 223 n 124 ILE 223 B VAL 224 n 125 VAL 224 B LYS 225 n 126 LYS 225 B ASP 226 n 127 ASP 226 B SER 227 n 128 SER 227 B SER 228 n 129 SER 228 B ALA 229 n 130 ALA 229 B ALA 230 n 131 ALA 230 B ARG 231 n 132 ARG 231 B ASN 232 n 133 ASN 232 B GLY 233 n 134 GLY 233 B LEU 234 n 135 LEU 234 B LEU 235 n 136 LEU 235 B THR 236 n 137 THR 236 B ASP 237 n 138 ASP 237 B HIS 238 n 139 HIS 238 B HIS 239 n 140 HIS 239 B ILE 240 n 141 ILE 240 B CYS 241 n 142 CYS 241 B GLU 242 n 143 GLU 242 B ILE 243 n 144 ILE 243 B ASN 244 n 145 ASN 244 B GLY 245 n 146 GLY 245 B GLN 246 n 147 GLN 246 B ASN 247 n 148 ASN 247 B VAL 248 n 149 VAL 248 B ILE 249 n 150 ILE 249 B GLY 250 n 151 GLY 250 B LEU 251 n 152 LEU 251 B LYS 252 n 153 LYS 252 B ASP 253 n 154 ASP 253 B ALA 254 n 155 ALA 254 B GLN 255 n 156 GLN 255 B ILE 256 n 157 ILE 256 B ALA 257 n 158 ALA 257 B ASP 258 n 159 ASP 258 B ILE 259 n 160 ILE 259 B LEU 260 n 161 LEU 260 B SER 261 n 162 SER 261 B THR 262 n 163 THR 262 B ALA 263 n 164 ALA 263 B GLY 264 n 165 GLY 264 B THR 265 n 166 THR 265 B VAL 266 n 167 VAL 266 B VAL 267 n 168 VAL 267 B THR 268 n 169 THR 268 B ILE 269 n 170 ILE 269 B THR 270 n 171 THR 270 B ILE 271 n 172 ILE 271 B MET 272 n 173 MET 272 B PRO 273 n 174 PRO 273 B ALA 274 n 175 ALA 274 B PHE 275 n 176 PHE 275 B ILE 276 n 177 ILE 276 B PHE 277 n 178 PHE 277 B GLU 278 n 179 GLU 278 B HIS 279 n 180 HIS 279 B ILE 280 n 181 ILE 280 B ILE 281 n 182 ILE 281 B n 183 282 B n 184 283 B n 185 284 B n 186 285 B n 187 286 B n 188 287 B n 189 288 B n 190 289 B n 191 290 B n 192 291 B n 193 292 B n 194 293 B n 195 294 B n 196 295 B n 197 296 B n 198 297 B n 199 298 B n 200 299 B n 201 300 B ALA 1 n 1 ALA 1 C PRO 2 n 2 PRO 2 C THR 3 n 3 THR 3 C ASN 4 n 4 ASN 4 C GLU 5 n 5 GLU 5 C PHE 6 n 6 PHE 6 C TYR 7 n 7 TYR 7 C ALA 8 n 8 ALA 8 C ALA 1 n 1 ALA 1 D PRO 2 n 2 PRO 2 D THR 3 n 3 THR 3 D ASN 4 n 4 ASN 4 D GLU 5 n 5 GLU 5 D PHE 6 n 6 PHE 6 D TYR 7 n 7 TYR 7 D ALA 8 n 8 ALA 8 D author_and_software_defined_assembly PISA 4 tetrameric 3730 -19.9 17270 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 119 A N LEU 20 A O ILE 188 A O ILE 89 A N ARG 193 A N ARG 94 A O GLN 159 A O GLN 60 A N ILE 163 A N ILE 64 A O GLU 166 A O GLU 67 A N LEU 119 A N LEU 20 A O ILE 188 A O ILE 89 A N ARG 193 A N ARG 94 A O GLN 159 A O GLN 60 A N VAL 160 A N VAL 61 A O ILE 138 A O ILE 39 A N GLN 141 A N GLN 42 A O ARG 130 A O ARG 31 A N GLU 166 A N GLU 67 A O ILE 163 A O ILE 64 A N MET 203 A N MET 104 A O VAL 267 A O VAL 168 A N MET 272 A N MET 173 A O HIS 239 A O HIS 140 A N ILE 243 A N ILE 144 A O GLN 246 A O GLN 147 A N THR 221 A N THR 122 A O ILE 214 A O ILE 115 A N PHE 215 A N PHE 116 D O PHE 6 D O PHE 6 B N VAL 117 B N VAL 18 B O MET 190 B O MET 91 B N ARG 193 B N ARG 94 B O GLN 159 B O GLN 60 B N ILE 163 B N ILE 64 B O GLU 166 B O GLU 67 B N VAL 117 B N VAL 18 B O MET 190 B O MET 91 B N ARG 193 B N ARG 94 B O GLN 159 B O GLN 60 B N VAL 160 B N VAL 61 B O ILE 138 B O ILE 39 B N GLN 141 B N GLN 42 B O ARG 130 B O ARG 31 B N GLU 166 B N GLU 67 B O ILE 163 B O ILE 64 B N MET 203 B N MET 104 B O VAL 267 B O VAL 168 B N MET 272 B N MET 173 B O HIS 239 B O HIS 140 B N ILE 243 B N ILE 144 B O GLN 246 B O GLN 147 B N THR 221 B N THR 122 B O ILE 214 B O ILE 115 B N PHE 215 B N PHE 116 C O PHE 6 C O PHE 6 1 A GLY 100 A GLY 1 1 Y 1 A SER 101 A SER 2 1 Y 1 A ALA 102 A ALA 3 1 Y 1 A MET 103 A MET 4 1 Y 1 A ALA 104 A ALA 5 1 Y 1 A ASP 105 A ASP 6 1 Y 1 A ILE 106 A ILE 7 1 Y 1 A GLY 107 A GLY 8 1 Y 1 A ALA 108 A ALA 9 1 Y 1 A GLU 109 A GLU 10 1 Y 1 A ILE 110 A ILE 11 1 Y 1 A LYS 111 A LYS 12 1 Y 1 A GLY 185 A GLY 86 1 Y 1 A GLU 186 A GLU 87 1 Y 1 A LYS 282 A LYS 183 1 Y 1 A ARG 283 A ARG 184 1 Y 1 A MET 284 A MET 185 1 Y 1 A ALA 285 A ALA 186 1 Y 1 A PRO 286 A PRO 187 1 Y 1 A SER 287 A SER 188 1 Y 1 A ILE 288 A ILE 189 1 Y 1 A MET 289 A MET 190 1 Y 1 A LYS 290 A LYS 191 1 Y 1 A SER 291 A SER 192 1 Y 1 A LEU 292 A LEU 193 1 Y 1 A MET 293 A MET 194 1 Y 1 A ASP 294 A ASP 195 1 Y 1 A HIS 295 A HIS 196 1 Y 1 A THR 296 A THR 197 1 Y 1 A ILE 297 A ILE 198 1 Y 1 A PRO 298 A PRO 199 1 Y 1 A GLU 299 A GLU 200 1 Y 1 A VAL 300 A VAL 201 1 Y 1 B GLY 100 B GLY 1 1 Y 1 B SER 101 B SER 2 1 Y 1 B ALA 102 B ALA 3 1 Y 1 B MET 103 B MET 4 1 Y 1 B ALA 104 B ALA 5 1 Y 1 B ASP 105 B ASP 6 1 Y 1 B ILE 106 B ILE 7 1 Y 1 B GLY 107 B GLY 8 1 Y 1 B ALA 108 B ALA 9 1 Y 1 B GLU 109 B GLU 10 1 Y 1 B ILE 110 B ILE 11 1 Y 1 B LYS 111 B LYS 12 1 Y 1 B GLY 185 B GLY 86 1 Y 1 B GLU 186 B GLU 87 1 Y 1 B LYS 187 B LYS 88 1 Y 1 B LYS 282 B LYS 183 1 Y 1 B ARG 283 B ARG 184 1 Y 1 B MET 284 B MET 185 1 Y 1 B ALA 285 B ALA 186 1 Y 1 B PRO 286 B PRO 187 1 Y 1 B SER 287 B SER 188 1 Y 1 B ILE 288 B ILE 189 1 Y 1 B MET 289 B MET 190 1 Y 1 B LYS 290 B LYS 191 1 Y 1 B SER 291 B SER 192 1 Y 1 B LEU 292 B LEU 193 1 Y 1 B MET 293 B MET 194 1 Y 1 B ASP 294 B ASP 195 1 Y 1 B HIS 295 B HIS 196 1 Y 1 B THR 296 B THR 197 1 Y 1 B ILE 297 B ILE 198 1 Y 1 B PRO 298 B PRO 199 1 Y 1 B GLU 299 B GLU 200 1 Y 1 B VAL 300 B VAL 201 1 Y 1 A A O CG2 ASP THR 258 262 1.43 1 A A NE2 OD1 GLN ASN 162 167 1.79 1 B B O N ASP GLY 122 125 2.16 1 15.57 2.50 113.10 128.67 A A A N CA C GLY GLY GLY 212 212 212 N 1 -3.77 0.50 120.30 116.53 B B B NE CZ NH1 ARG ARG ARG 193 193 193 N 1 -6.12 0.90 118.30 112.18 B B B CB CG OD1 ASP ASP ASP 206 206 206 N 1 A A NE2 CD2 HIS HIS 238 238 -0.069 0.011 1.373 1.304 N 1 A A NE2 CD2 HIS HIS 239 239 -0.066 0.011 1.373 1.307 N 1 B B CB SG CYS CYS 168 168 -0.128 0.016 1.812 1.684 N 1 B B CG CD GLU GLU 198 198 0.094 0.015 1.515 1.609 N 1 B B CZ NH1 ARG ARG 231 231 -0.097 0.013 1.326 1.229 N 1 B ASP 122 -116.83 -168.67 1 B ILE 127 61.64 -21.03 1 B LYS 181 -66.26 23.29 1 B GLN 182 -146.62 10.30 1 B ARG 195 37.65 60.78 1 B ASP 206 -62.39 -176.91 1 B ASN 244 36.13 53.60 1 B VAL 248 -145.89 -6.37 37.641 -0.21 0.00 0.00 -0.39 0.00 0.60 0.917 0.896 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.23493 0.19426 0.19624 2.81 50.00 667 12615 5.0 96.35 23.016 0.202 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.314 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.81 50.00 0 2687 0 0 2687 0.027 0.022 2735 2.269 1.942 3683 7.695 5.000 345 37.019 24.407 118 22.063 15.000 494 21.780 15.000 16 0.142 0.200 433 0.008 0.020 1998 0.228 0.200 1149 0.342 0.200 1916 0.207 0.200 90 0.138 0.200 18 0.057 0.200 3 3.340 1.500 1772 5.618 2.000 2786 5.677 3.000 1040 8.231 4.500 897 0.332 0.231 2.878 47 781 20 83.22 2.80 50.00 5G1D 13799 0.2 0.07 1 24.00 8.8 97.6 0.29 2.80 2.85 4.36 1 4.8 93.9 refinement REFMAC 5.2.0019 data reduction HKL-2000 data scaling SCALEPACK phasing PHENIX The complex structure of syntenin-1 PDZ domain with c-terminal extension 1 N N 1 N N 2 N N 2 N N A SER 147 A SER 48 HELX_P A VAL 152 A VAL 53 1 1 6 A SER 172 A SER 73 HELX_P A ALA 183 A ALA 84 1 2 12 A SER 227 A SER 128 HELX_P A ASN 232 A ASN 133 1 3 6 A LYS 252 A LYS 153 HELX_P A THR 262 A THR 163 1 4 11 A ALA 274 A ALA 175 HELX_P A ILE 281 A ILE 182 1 5 8 B SER 147 B SER 48 HELX_P B VAL 152 B VAL 53 1 6 6 B SER 172 B SER 73 HELX_P B LYS 181 B LYS 82 1 7 10 B SER 227 B SER 128 HELX_P B GLY 233 B GLY 134 1 8 7 B LYS 252 B LYS 153 HELX_P B ALA 263 B ALA 164 1 9 12 B ALA 274 B ALA 175 HELX_P B ILE 280 B ILE 181 1 10 7 SIGNALING PROTEIN SIGNALING PROTEIN SDCB1_RAT UNP 1 Q9JI92 5G1D PDB 2 5G1D 108 300 5G1D 108 300 Q9JI92 A 1 9 201 108 300 5G1D 108 300 Q9JI92 B 1 9 201 1 8 5G1D 1 8 5G1D C 2 1 8 1 8 5G1D 1 8 5G1D D 2 1 8 1 expression tag GLY 100 5G1D A Q9JI92 UNP 1 1 expression tag SER 101 5G1D A Q9JI92 UNP 2 1 expression tag ALA 102 5G1D A Q9JI92 UNP 3 1 expression tag MET 103 5G1D A Q9JI92 UNP 4 1 expression tag ALA 104 5G1D A Q9JI92 UNP 5 1 expression tag ASP 105 5G1D A Q9JI92 UNP 6 1 expression tag ILE 106 5G1D A Q9JI92 UNP 7 1 expression tag GLY 107 5G1D A Q9JI92 UNP 8 2 expression tag GLY 100 5G1D B Q9JI92 UNP 1 2 expression tag SER 101 5G1D B Q9JI92 UNP 2 2 expression tag ALA 102 5G1D B Q9JI92 UNP 3 2 expression tag MET 103 5G1D B Q9JI92 UNP 4 2 expression tag ALA 104 5G1D B Q9JI92 UNP 5 2 expression tag ASP 105 5G1D B Q9JI92 UNP 6 2 expression tag ILE 106 5G1D B Q9JI92 UNP 7 2 expression tag GLY 107 5G1D B Q9JI92 UNP 8 4 5 2 4 3 4 5 2 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 114 A ILE 15 A LEU 119 A LEU 20 A ILE 188 A ILE 89 A ARG 193 A ARG 94 A GLN 159 A GLN 60 A ILE 163 A ILE 64 A GLU 166 A GLU 67 A ASN 167 A ASN 68 A ILE 114 A ILE 15 A LEU 119 A LEU 20 A ILE 188 A ILE 89 A ARG 193 A ARG 94 A GLN 159 A GLN 60 A ILE 163 A ILE 64 A GLY 137 A GLY 38 A VAL 143 A VAL 44 A LEU 129 A LEU 30 A VAL 134 A VAL 35 A GLU 166 A GLU 67 A ASN 167 A ASN 68 A GLN 159 A GLN 60 A ILE 163 A ILE 64 A ARG 199 A ARG 100 A HIS 204 A HIS 105 A VAL 266 A VAL 167 A PRO 273 A PRO 174 A HIS 238 A HIS 139 A ILE 243 A ILE 144 A GLN 246 A GLN 147 A ASN 247 A ASN 148 A LYS 219 A LYS 120 A ILE 223 A ILE 124 A PHE 213 A PHE 114 A LYS 216 A LYS 117 D PHE 6 D PHE 6 D TYR 7 D TYR 7 B ILE 114 B ILE 15 B ILE 118 B ILE 19 B THR 189 B THR 90 B ARG 193 B ARG 94 B GLN 159 B GLN 60 B ILE 163 B ILE 64 B GLU 166 B GLU 67 B ASN 167 B ASN 68 B ILE 114 B ILE 15 B ILE 118 B ILE 19 B THR 189 B THR 90 B ARG 193 B ARG 94 B GLN 159 B GLN 60 B ILE 163 B ILE 64 B GLY 137 B GLY 38 B VAL 143 B VAL 44 B LEU 129 B LEU 30 B VAL 134 B VAL 35 B GLU 166 B GLU 67 B ASN 167 B ASN 68 B GLN 159 B GLN 60 B ILE 163 B ILE 64 B ARG 199 B ARG 100 B HIS 204 B HIS 105 B VAL 266 B VAL 167 B PRO 273 B PRO 174 B HIS 238 B HIS 139 B ILE 243 B ILE 144 B GLN 246 B GLN 147 B ASN 247 B ASN 148 B LYS 219 B LYS 120 B ILE 223 B ILE 124 B PHE 213 B PHE 114 B LYS 216 B LYS 117 C PHE 6 C PHE 6 C TYR 7 C TYR 7 19 P 21 21 21