0.018741
0.000000
0.000000
0.000000
0.014259
0.000000
0.000000
0.000000
0.011126
0.00000
0.00000
0.00000
Kuwabara, N.
Senda, T.
Kato, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
53.358
70.129
89.879
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C12 H15 N O8
301.249
n
4-nitrophenyl beta-D-mannopyranoside
4-Nitrophenyl-beta-D-mannopyranoside; 4-nitrophenyl beta-D-mannoside; 4-nitrophenyl D-mannoside; 4-nitrophenyl mannoside
D-saccharide
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
S
C
N
255
S
C
N
256
S
C
N
257
S
C
N
258
R
C
N
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
N
266
N
N
N
267
N
O
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
O
N
272
N
O
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
S
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
C
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
R
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
N
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
N
436
N
O
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
Y
162
N
sing
Y
163
N
doub
Y
164
N
doub
N
165
N
sing
Y
166
N
sing
N
167
N
sing
Y
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
Y
243
N
doub
Y
244
N
sing
Y
245
N
sing
Y
246
N
doub
Y
247
N
doub
Y
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
1091-6490
113
9280
9285
10.1073/pnas.1525545113
27493216
Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
2016
10.2210/pdb5ggk/pdb
pdb_00005ggk
100
1
PIXEL
2014-05-21
DECTRIS PILATUS 2M
SINGLE WAVELENGTH
M
x-ray
1
1.1000
1.0
BL-1A
Photon Factory
1.1000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-1A
17623.020
Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
2.4.1.-
UNP residues 92-250
2
man
polymer
301.249
4-nitrophenyl beta-D-mannopyranoside
2
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
1
syn
non-polymer
18.015
water
428
nat
water
POMGnT1,UDP-GlcNAc:alpha-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I.2,GnT I.2
no
no
GPLGSGSGPRRVLDVEVYSSRSKVYVAVDGTTVLEDEAREQGRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNM
VAPGRVLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTWAFVGRKGGPVFGEKHSKSPALSSWGDPVLLKTDVPL
SSAE
GPLGSGSGPRRVLDVEVYSSRSKVYVAVDGTTVLEDEAREQGRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNM
VAPGRVLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTWAFVGRKGGPVFGEKHSKSPALSSWGDPVLLKTDVPL
SSAE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
164
POMGNT1, MGAT1.2, UNQ746/PRO1475
9606
Homo sapiens
562
Escherichia coli
plasmid
Biological sequence
1
2.39
48.44
VAPOR DIFFUSION, HANGING DROP
8.5
Tris-HCl, PEG-10000
293
citation
diffrn_source
pdbx_struct_oper_list
chem_comp
entity
pdbx_entity_nonpoly
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Data collection
Database references
Derived calculations
Derived calculations
Structure summary
Data collection
Database references
Structure summary
1
0
2016-08-10
1
1
2016-08-31
1
2
2020-02-26
1
3
2020-07-29
1
4
2024-03-20
_citation.journal_id_CSD
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_oper_list.symmetry_operation
_chem_comp.mon_nstd_flag
_chem_comp.name
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Japan
JSPS
26840029
Japan
JSPS
16K07284
N
PDBJ
Y
PDBJ
2016-06-16
REL
REL
1
A
O
HOH
628
6.22
1
B
O
HOH
598
6.05
1
B
O
HOH
599
6.54
1
B
O
HOH
600
7.02
MBE
4-nitrophenyl beta-D-mannopyranoside
GOL
GLYCEROL
EDO
1,2-ETHANEDIOL
PEG
DI(HYDROXYETHYL)ETHER
HOH
water
MBE
2
2
MBE
MBE
301
A
GOL
2
3
GOL
GOL
302
A
GOL
3
3
GOL
GOL
303
A
EDO
1
4
EDO
EDO
304
A
EDO
2
4
EDO
EDO
305
A
MBE
1
2
MBE
MBE
301
B
GOL
1
3
GOL
GOL
302
B
PEG
1
5
PEG
PEG
303
B
HOH
222
6
HOH
HOH
401
A
HOH
411
6
HOH
HOH
402
A
HOH
279
6
HOH
HOH
403
A
HOH
121
6
HOH
HOH
404
A
HOH
104
6
HOH
HOH
405
A
HOH
235
6
HOH
HOH
406
A
HOH
348
6
HOH
HOH
407
A
HOH
230
6
HOH
HOH
408
A
HOH
370
6
HOH
HOH
409
A
HOH
285
6
HOH
HOH
410
A
HOH
76
6
HOH
HOH
411
A
HOH
85
6
HOH
HOH
412
A
HOH
176
6
HOH
HOH
413
A
HOH
159
6
HOH
HOH
414
A
HOH
37
6
HOH
HOH
415
A
HOH
364
6
HOH
HOH
416
A
HOH
8
6
HOH
HOH
417
A
HOH
244
6
HOH
HOH
418
A
HOH
408
6
HOH
HOH
419
A
HOH
101
6
HOH
HOH
420
A
HOH
198
6
HOH
HOH
421
A
HOH
150
6
HOH
HOH
422
A
HOH
107
6
HOH
HOH
423
A
HOH
400
6
HOH
HOH
424
A
HOH
23
6
HOH
HOH
425
A
HOH
324
6
HOH
HOH
426
A
HOH
338
6
HOH
HOH
427
A
HOH
2
6
HOH
HOH
428
A
HOH
106
6
HOH
HOH
429
A
HOH
192
6
HOH
HOH
430
A
HOH
86
6
HOH
HOH
431
A
HOH
206
6
HOH
HOH
432
A
HOH
273
6
HOH
HOH
433
A
HOH
7
6
HOH
HOH
434
A
HOH
316
6
HOH
HOH
435
A
HOH
272
6
HOH
HOH
436
A
HOH
140
6
HOH
HOH
437
A
HOH
113
6
HOH
HOH
438
A
HOH
258
6
HOH
HOH
439
A
HOH
208
6
HOH
HOH
440
A
HOH
12
6
HOH
HOH
441
A
HOH
182
6
HOH
HOH
442
A
HOH
136
6
HOH
HOH
443
A
HOH
112
6
HOH
HOH
444
A
HOH
256
6
HOH
HOH
445
A
HOH
270
6
HOH
HOH
446
A
HOH
71
6
HOH
HOH
447
A
HOH
310
6
HOH
HOH
448
A
HOH
53
6
HOH
HOH
449
A
HOH
43
6
HOH
HOH
450
A
HOH
151
6
HOH
HOH
451
A
HOH
90
6
HOH
HOH
452
A
HOH
38
6
HOH
HOH
453
A
HOH
343
6
HOH
HOH
454
A
HOH
301
6
HOH
HOH
455
A
HOH
268
6
HOH
HOH
456
A
HOH
82
6
HOH
HOH
457
A
HOH
32
6
HOH
HOH
458
A
HOH
127
6
HOH
HOH
459
A
HOH
249
6
HOH
HOH
460
A
HOH
326
6
HOH
HOH
461
A
HOH
401
6
HOH
HOH
462
A
HOH
18
6
HOH
HOH
463
A
HOH
47
6
HOH
HOH
464
A
HOH
274
6
HOH
HOH
465
A
HOH
30
6
HOH
HOH
466
A
HOH
305
6
HOH
HOH
467
A
HOH
299
6
HOH
HOH
468
A
HOH
45
6
HOH
HOH
469
A
HOH
93
6
HOH
HOH
470
A
HOH
9
6
HOH
HOH
471
A
HOH
389
6
HOH
HOH
472
A
HOH
153
6
HOH
HOH
473
A
HOH
72
6
HOH
HOH
474
A
HOH
61
6
HOH
HOH
475
A
HOH
58
6
HOH
HOH
476
A
HOH
427
6
HOH
HOH
477
A
HOH
193
6
HOH
HOH
478
A
HOH
263
6
HOH
HOH
479
A
HOH
34
6
HOH
HOH
480
A
HOH
225
6
HOH
HOH
481
A
HOH
11
6
HOH
HOH
482
A
HOH
240
6
HOH
HOH
483
A
HOH
46
6
HOH
HOH
484
A
HOH
180
6
HOH
HOH
485
A
HOH
293
6
HOH
HOH
486
A
HOH
372
6
HOH
HOH
487
A
HOH
55
6
HOH
HOH
488
A
HOH
40
6
HOH
HOH
489
A
HOH
48
6
HOH
HOH
490
A
HOH
109
6
HOH
HOH
491
A
HOH
269
6
HOH
HOH
492
A
HOH
4
6
HOH
HOH
493
A
HOH
156
6
HOH
HOH
494
A
HOH
303
6
HOH
HOH
495
A
HOH
68
6
HOH
HOH
496
A
HOH
383
6
HOH
HOH
497
A
HOH
197
6
HOH
HOH
498
A
HOH
275
6
HOH
HOH
499
A
HOH
69
6
HOH
HOH
500
A
HOH
265
6
HOH
HOH
501
A
HOH
195
6
HOH
HOH
502
A
HOH
133
6
HOH
HOH
503
A
HOH
254
6
HOH
HOH
504
A
HOH
284
6
HOH
HOH
505
A
HOH
77
6
HOH
HOH
506
A
HOH
264
6
HOH
HOH
507
A
HOH
421
6
HOH
HOH
508
A
HOH
157
6
HOH
HOH
509
A
HOH
52
6
HOH
HOH
510
A
HOH
31
6
HOH
HOH
511
A
HOH
328
6
HOH
HOH
512
A
HOH
317
6
HOH
HOH
513
A
HOH
187
6
HOH
HOH
514
A
HOH
28
6
HOH
HOH
515
A
HOH
393
6
HOH
HOH
516
A
HOH
118
6
HOH
HOH
517
A
HOH
35
6
HOH
HOH
518
A
HOH
214
6
HOH
HOH
519
A
HOH
145
6
HOH
HOH
520
A
HOH
80
6
HOH
HOH
521
A
HOH
239
6
HOH
HOH
522
A
HOH
60
6
HOH
HOH
523
A
HOH
103
6
HOH
HOH
524
A
HOH
185
6
HOH
HOH
525
A
HOH
59
6
HOH
HOH
526
A
HOH
17
6
HOH
HOH
527
A
HOH
426
6
HOH
HOH
528
A
HOH
390
6
HOH
HOH
529
A
HOH
369
6
HOH
HOH
530
A
HOH
62
6
HOH
HOH
531
A
HOH
399
6
HOH
HOH
532
A
HOH
169
6
HOH
HOH
533
A
HOH
384
6
HOH
HOH
534
A
HOH
304
6
HOH
HOH
535
A
HOH
297
6
HOH
HOH
536
A
HOH
211
6
HOH
HOH
537
A
HOH
190
6
HOH
HOH
538
A
HOH
224
6
HOH
HOH
539
A
HOH
419
6
HOH
HOH
540
A
HOH
342
6
HOH
HOH
541
A
HOH
359
6
HOH
HOH
542
A
HOH
351
6
HOH
HOH
543
A
HOH
56
6
HOH
HOH
544
A
HOH
376
6
HOH
HOH
545
A
HOH
424
6
HOH
HOH
546
A
HOH
238
6
HOH
HOH
547
A
HOH
168
6
HOH
HOH
548
A
HOH
243
6
HOH
HOH
549
A
HOH
388
6
HOH
HOH
550
A
HOH
229
6
HOH
HOH
551
A
HOH
287
6
HOH
HOH
552
A
HOH
174
6
HOH
HOH
553
A
HOH
414
6
HOH
HOH
554
A
HOH
340
6
HOH
HOH
555
A
HOH
142
6
HOH
HOH
556
A
HOH
409
6
HOH
HOH
557
A
HOH
320
6
HOH
HOH
558
A
HOH
135
6
HOH
HOH
559
A
HOH
248
6
HOH
HOH
560
A
HOH
141
6
HOH
HOH
561
A
HOH
232
6
HOH
HOH
562
A
HOH
98
6
HOH
HOH
563
A
HOH
323
6
HOH
HOH
564
A
HOH
407
6
HOH
HOH
565
A
HOH
119
6
HOH
HOH
566
A
HOH
353
6
HOH
HOH
567
A
HOH
255
6
HOH
HOH
568
A
HOH
329
6
HOH
HOH
569
A
HOH
120
6
HOH
HOH
570
A
HOH
124
6
HOH
HOH
571
A
HOH
398
6
HOH
HOH
572
A
HOH
294
6
HOH
HOH
573
A
HOH
420
6
HOH
HOH
574
A
HOH
288
6
HOH
HOH
575
A
HOH
191
6
HOH
HOH
576
A
HOH
126
6
HOH
HOH
577
A
HOH
373
6
HOH
HOH
578
A
HOH
422
6
HOH
HOH
579
A
HOH
367
6
HOH
HOH
580
A
HOH
315
6
HOH
HOH
581
A
HOH
358
6
HOH
HOH
582
A
HOH
267
6
HOH
HOH
583
A
HOH
207
6
HOH
HOH
584
A
HOH
257
6
HOH
HOH
585
A
HOH
418
6
HOH
HOH
586
A
HOH
237
6
HOH
HOH
587
A
HOH
405
6
HOH
HOH
588
A
HOH
170
6
HOH
HOH
589
A
HOH
164
6
HOH
HOH
590
A
HOH
165
6
HOH
HOH
591
A
HOH
308
6
HOH
HOH
592
A
HOH
322
6
HOH
HOH
593
A
HOH
231
6
HOH
HOH
594
A
HOH
410
6
HOH
HOH
595
A
HOH
219
6
HOH
HOH
596
A
HOH
356
6
HOH
HOH
597
A
HOH
385
6
HOH
HOH
598
A
HOH
250
6
HOH
HOH
599
A
HOH
352
6
HOH
HOH
600
A
HOH
339
6
HOH
HOH
601
A
HOH
309
6
HOH
HOH
602
A
HOH
357
6
HOH
HOH
603
A
HOH
83
6
HOH
HOH
604
A
HOH
345
6
HOH
HOH
605
A
HOH
97
6
HOH
HOH
606
A
HOH
212
6
HOH
HOH
607
A
HOH
220
6
HOH
HOH
608
A
HOH
129
6
HOH
HOH
609
A
HOH
105
6
HOH
HOH
610
A
HOH
242
6
HOH
HOH
611
A
HOH
227
6
HOH
HOH
612
A
HOH
271
6
HOH
HOH
613
A
HOH
241
6
HOH
HOH
614
A
HOH
276
6
HOH
HOH
615
A
HOH
362
6
HOH
HOH
616
A
HOH
386
6
HOH
HOH
617
A
HOH
350
6
HOH
HOH
618
A
HOH
223
6
HOH
HOH
619
A
HOH
261
6
HOH
HOH
620
A
HOH
221
6
HOH
HOH
621
A
HOH
160
6
HOH
HOH
622
A
HOH
64
6
HOH
HOH
623
A
HOH
54
6
HOH
HOH
624
A
HOH
428
6
HOH
HOH
625
A
HOH
346
6
HOH
HOH
626
A
HOH
314
6
HOH
HOH
627
A
HOH
252
6
HOH
HOH
628
A
HOH
155
6
HOH
HOH
401
B
HOH
312
6
HOH
HOH
402
B
HOH
184
6
HOH
HOH
403
B
HOH
341
6
HOH
HOH
404
B
HOH
143
6
HOH
HOH
405
B
HOH
99
6
HOH
HOH
406
B
HOH
283
6
HOH
HOH
407
B
HOH
84
6
HOH
HOH
408
B
HOH
201
6
HOH
HOH
409
B
HOH
416
6
HOH
HOH
410
B
HOH
123
6
HOH
HOH
411
B
HOH
70
6
HOH
HOH
412
B
HOH
266
6
HOH
HOH
413
B
HOH
280
6
HOH
HOH
414
B
HOH
377
6
HOH
HOH
415
B
HOH
354
6
HOH
HOH
416
B
HOH
360
6
HOH
HOH
417
B
HOH
96
6
HOH
HOH
418
B
HOH
158
6
HOH
HOH
419
B
HOH
379
6
HOH
HOH
420
B
HOH
39
6
HOH
HOH
421
B
HOH
289
6
HOH
HOH
422
B
HOH
183
6
HOH
HOH
423
B
HOH
234
6
HOH
HOH
424
B
HOH
204
6
HOH
HOH
425
B
HOH
144
6
HOH
HOH
426
B
HOH
177
6
HOH
HOH
427
B
HOH
117
6
HOH
HOH
428
B
HOH
65
6
HOH
HOH
429
B
HOH
247
6
HOH
HOH
430
B
HOH
368
6
HOH
HOH
431
B
HOH
163
6
HOH
HOH
432
B
HOH
21
6
HOH
HOH
433
B
HOH
57
6
HOH
HOH
434
B
HOH
3
6
HOH
HOH
435
B
HOH
5
6
HOH
HOH
436
B
HOH
253
6
HOH
HOH
437
B
HOH
335
6
HOH
HOH
438
B
HOH
302
6
HOH
HOH
439
B
HOH
87
6
HOH
HOH
440
B
HOH
41
6
HOH
HOH
441
B
HOH
152
6
HOH
HOH
442
B
HOH
262
6
HOH
HOH
443
B
HOH
216
6
HOH
HOH
444
B
HOH
213
6
HOH
HOH
445
B
HOH
94
6
HOH
HOH
446
B
HOH
200
6
HOH
HOH
447
B
HOH
73
6
HOH
HOH
448
B
HOH
131
6
HOH
HOH
449
B
HOH
33
6
HOH
HOH
450
B
HOH
205
6
HOH
HOH
451
B
HOH
88
6
HOH
HOH
452
B
HOH
313
6
HOH
HOH
453
B
HOH
29
6
HOH
HOH
454
B
HOH
173
6
HOH
HOH
455
B
HOH
10
6
HOH
HOH
456
B
HOH
81
6
HOH
HOH
457
B
HOH
122
6
HOH
HOH
458
B
HOH
167
6
HOH
HOH
459
B
HOH
146
6
HOH
HOH
460
B
HOH
89
6
HOH
HOH
461
B
HOH
108
6
HOH
HOH
462
B
HOH
14
6
HOH
HOH
463
B
HOH
415
6
HOH
HOH
464
B
HOH
125
6
HOH
HOH
465
B
HOH
74
6
HOH
HOH
466
B
HOH
78
6
HOH
HOH
467
B
HOH
95
6
HOH
HOH
468
B
HOH
100
6
HOH
HOH
469
B
HOH
15
6
HOH
HOH
470
B
HOH
199
6
HOH
HOH
471
B
HOH
49
6
HOH
HOH
472
B
HOH
1
6
HOH
HOH
473
B
HOH
20
6
HOH
HOH
474
B
HOH
25
6
HOH
HOH
475
B
HOH
114
6
HOH
HOH
476
B
HOH
19
6
HOH
HOH
477
B
HOH
291
6
HOH
HOH
478
B
HOH
179
6
HOH
HOH
479
B
HOH
63
6
HOH
HOH
480
B
HOH
134
6
HOH
HOH
481
B
HOH
26
6
HOH
HOH
482
B
HOH
217
6
HOH
HOH
483
B
HOH
374
6
HOH
HOH
484
B
HOH
50
6
HOH
HOH
485
B
HOH
6
6
HOH
HOH
486
B
HOH
139
6
HOH
HOH
487
B
HOH
311
6
HOH
HOH
488
B
HOH
175
6
HOH
HOH
489
B
HOH
13
6
HOH
HOH
490
B
HOH
330
6
HOH
HOH
491
B
HOH
92
6
HOH
HOH
492
B
HOH
307
6
HOH
HOH
493
B
HOH
202
6
HOH
HOH
494
B
HOH
178
6
HOH
HOH
495
B
HOH
278
6
HOH
HOH
496
B
HOH
149
6
HOH
HOH
497
B
HOH
116
6
HOH
HOH
498
B
HOH
189
6
HOH
HOH
499
B
HOH
392
6
HOH
HOH
500
B
HOH
402
6
HOH
HOH
501
B
HOH
51
6
HOH
HOH
502
B
HOH
403
6
HOH
HOH
503
B
HOH
128
6
HOH
HOH
504
B
HOH
66
6
HOH
HOH
505
B
HOH
67
6
HOH
HOH
506
B
HOH
130
6
HOH
HOH
507
B
HOH
132
6
HOH
HOH
508
B
HOH
111
6
HOH
HOH
509
B
HOH
91
6
HOH
HOH
510
B
HOH
79
6
HOH
HOH
511
B
HOH
16
6
HOH
HOH
512
B
HOH
42
6
HOH
HOH
513
B
HOH
347
6
HOH
HOH
514
B
HOH
24
6
HOH
HOH
515
B
HOH
44
6
HOH
HOH
516
B
HOH
209
6
HOH
HOH
517
B
HOH
115
6
HOH
HOH
518
B
HOH
380
6
HOH
HOH
519
B
HOH
375
6
HOH
HOH
520
B
HOH
332
6
HOH
HOH
521
B
HOH
137
6
HOH
HOH
522
B
HOH
110
6
HOH
HOH
523
B
HOH
319
6
HOH
HOH
524
B
HOH
138
6
HOH
HOH
525
B
HOH
22
6
HOH
HOH
526
B
HOH
203
6
HOH
HOH
527
B
HOH
321
6
HOH
HOH
528
B
HOH
194
6
HOH
HOH
529
B
HOH
286
6
HOH
HOH
530
B
HOH
154
6
HOH
HOH
531
B
HOH
391
6
HOH
HOH
532
B
HOH
381
6
HOH
HOH
533
B
HOH
166
6
HOH
HOH
534
B
HOH
333
6
HOH
HOH
535
B
HOH
181
6
HOH
HOH
536
B
HOH
215
6
HOH
HOH
537
B
HOH
325
6
HOH
HOH
538
B
HOH
406
6
HOH
HOH
539
B
HOH
236
6
HOH
HOH
540
B
HOH
355
6
HOH
HOH
541
B
HOH
161
6
HOH
HOH
542
B
HOH
102
6
HOH
HOH
543
B
HOH
282
6
HOH
HOH
544
B
HOH
378
6
HOH
HOH
545
B
HOH
344
6
HOH
HOH
546
B
HOH
226
6
HOH
HOH
547
B
HOH
75
6
HOH
HOH
548
B
HOH
295
6
HOH
HOH
549
B
HOH
296
6
HOH
HOH
550
B
HOH
281
6
HOH
HOH
551
B
HOH
162
6
HOH
HOH
552
B
HOH
251
6
HOH
HOH
553
B
HOH
292
6
HOH
HOH
554
B
HOH
300
6
HOH
HOH
555
B
HOH
336
6
HOH
HOH
556
B
HOH
394
6
HOH
HOH
557
B
HOH
397
6
HOH
HOH
558
B
HOH
298
6
HOH
HOH
559
B
HOH
412
6
HOH
HOH
560
B
HOH
147
6
HOH
HOH
561
B
HOH
423
6
HOH
HOH
562
B
HOH
246
6
HOH
HOH
563
B
HOH
361
6
HOH
HOH
564
B
HOH
210
6
HOH
HOH
565
B
HOH
331
6
HOH
HOH
566
B
HOH
334
6
HOH
HOH
567
B
HOH
395
6
HOH
HOH
568
B
HOH
188
6
HOH
HOH
569
B
HOH
186
6
HOH
HOH
570
B
HOH
36
6
HOH
HOH
571
B
HOH
277
6
HOH
HOH
572
B
HOH
417
6
HOH
HOH
573
B
HOH
371
6
HOH
HOH
574
B
HOH
218
6
HOH
HOH
575
B
HOH
363
6
HOH
HOH
576
B
HOH
196
6
HOH
HOH
577
B
HOH
172
6
HOH
HOH
578
B
HOH
306
6
HOH
HOH
579
B
HOH
387
6
HOH
HOH
580
B
HOH
349
6
HOH
HOH
581
B
HOH
382
6
HOH
HOH
582
B
HOH
425
6
HOH
HOH
583
B
HOH
27
6
HOH
HOH
584
B
HOH
171
6
HOH
HOH
585
B
HOH
245
6
HOH
HOH
586
B
HOH
233
6
HOH
HOH
587
B
HOH
327
6
HOH
HOH
588
B
HOH
396
6
HOH
HOH
589
B
HOH
366
6
HOH
HOH
590
B
HOH
260
6
HOH
HOH
591
B
HOH
365
6
HOH
HOH
592
B
HOH
259
6
HOH
HOH
593
B
HOH
318
6
HOH
HOH
594
B
HOH
404
6
HOH
HOH
595
B
HOH
337
6
HOH
HOH
596
B
HOH
148
6
HOH
HOH
597
B
HOH
413
6
HOH
HOH
598
B
HOH
290
6
HOH
HOH
599
B
HOH
228
6
HOH
HOH
600
B
n
1
87
A
n
2
88
A
n
3
89
A
n
4
90
A
n
5
91
A
n
6
92
A
n
7
93
A
n
8
94
A
n
9
95
A
n
10
96
A
ARG
97
n
11
ARG
97
A
VAL
98
n
12
VAL
98
A
LEU
99
n
13
LEU
99
A
ASP
100
n
14
ASP
100
A
VAL
101
n
15
VAL
101
A
GLU
102
n
16
GLU
102
A
VAL
103
n
17
VAL
103
A
TYR
104
n
18
TYR
104
A
SER
105
n
19
SER
105
A
SER
106
n
20
SER
106
A
ARG
107
n
21
ARG
107
A
SER
108
n
22
SER
108
A
LYS
109
n
23
LYS
109
A
VAL
110
n
24
VAL
110
A
TYR
111
n
25
TYR
111
A
VAL
112
n
26
VAL
112
A
ALA
113
n
27
ALA
113
A
VAL
114
n
28
VAL
114
A
ASP
115
n
29
ASP
115
A
GLY
116
n
30
GLY
116
A
THR
117
n
31
THR
117
A
THR
118
n
32
THR
118
A
VAL
119
n
33
VAL
119
A
LEU
120
n
34
LEU
120
A
GLU
121
n
35
GLU
121
A
ASP
122
n
36
ASP
122
A
GLU
123
n
37
GLU
123
A
ALA
124
n
38
ALA
124
A
ARG
125
n
39
ARG
125
A
GLU
126
n
40
GLU
126
A
GLN
127
n
41
GLN
127
A
GLY
128
n
42
GLY
128
A
ARG
129
n
43
ARG
129
A
GLY
130
n
44
GLY
130
A
ILE
131
n
45
ILE
131
A
HIS
132
n
46
HIS
132
A
VAL
133
n
47
VAL
133
A
ILE
134
n
48
ILE
134
A
VAL
135
n
49
VAL
135
A
LEU
136
n
50
LEU
136
A
ASN
137
n
51
ASN
137
A
GLN
138
n
52
GLN
138
A
ALA
139
n
53
ALA
139
A
THR
140
n
54
THR
140
A
GLY
141
n
55
GLY
141
A
HIS
142
n
56
HIS
142
A
VAL
143
n
57
VAL
143
A
MET
144
n
58
MET
144
A
ALA
145
n
59
ALA
145
A
LYS
146
n
60
LYS
146
A
ARG
147
n
61
ARG
147
A
VAL
148
n
62
VAL
148
A
PHE
149
n
63
PHE
149
A
ASP
150
n
64
ASP
150
A
THR
151
n
65
THR
151
A
TYR
152
n
66
TYR
152
A
SER
153
n
67
SER
153
A
PRO
154
n
68
PRO
154
A
HIS
155
n
69
HIS
155
A
GLU
156
n
70
GLU
156
A
ASP
157
n
71
ASP
157
A
GLU
158
n
72
GLU
158
A
ALA
159
n
73
ALA
159
A
MET
160
n
74
MET
160
A
VAL
161
n
75
VAL
161
A
LEU
162
n
76
LEU
162
A
PHE
163
n
77
PHE
163
A
LEU
164
n
78
LEU
164
A
ASN
165
n
79
ASN
165
A
MET
166
n
80
MET
166
A
VAL
167
n
81
VAL
167
A
ALA
168
n
82
ALA
168
A
PRO
169
n
83
PRO
169
A
GLY
170
n
84
GLY
170
A
ARG
171
n
85
ARG
171
A
VAL
172
n
86
VAL
172
A
LEU
173
n
87
LEU
173
A
ILE
174
n
88
ILE
174
A
CYS
175
n
89
CYS
175
A
THR
176
n
90
THR
176
A
VAL
177
n
91
VAL
177
A
LYS
178
n
92
LYS
178
A
ASP
179
n
93
ASP
179
A
GLU
180
n
94
GLU
180
A
GLY
181
n
95
GLY
181
A
SER
182
n
96
SER
182
A
PHE
183
n
97
PHE
183
A
HIS
184
n
98
HIS
184
A
LEU
185
n
99
LEU
185
A
LYS
186
n
100
LYS
186
A
ASP
187
n
101
ASP
187
A
THR
188
n
102
THR
188
A
ALA
189
n
103
ALA
189
A
LYS
190
n
104
LYS
190
A
ALA
191
n
105
ALA
191
A
LEU
192
n
106
LEU
192
A
LEU
193
n
107
LEU
193
A
ARG
194
n
108
ARG
194
A
SER
195
n
109
SER
195
A
LEU
196
n
110
LEU
196
A
GLY
197
n
111
GLY
197
A
SER
198
n
112
SER
198
A
GLN
199
n
113
GLN
199
A
ALA
200
n
114
ALA
200
A
GLY
201
n
115
GLY
201
A
PRO
202
n
116
PRO
202
A
ALA
203
n
117
ALA
203
A
LEU
204
n
118
LEU
204
A
GLY
205
n
119
GLY
205
A
TRP
206
n
120
TRP
206
A
ARG
207
n
121
ARG
207
A
ASP
208
n
122
ASP
208
A
THR
209
n
123
THR
209
A
TRP
210
n
124
TRP
210
A
ALA
211
n
125
ALA
211
A
PHE
212
n
126
PHE
212
A
VAL
213
n
127
VAL
213
A
GLY
214
n
128
GLY
214
A
ARG
215
n
129
ARG
215
A
LYS
216
n
130
LYS
216
A
GLY
217
n
131
GLY
217
A
GLY
218
n
132
GLY
218
A
PRO
219
n
133
PRO
219
A
VAL
220
n
134
VAL
220
A
PHE
221
n
135
PHE
221
A
GLY
222
n
136
GLY
222
A
GLU
223
n
137
GLU
223
A
LYS
224
n
138
LYS
224
A
HIS
225
n
139
HIS
225
A
SER
226
n
140
SER
226
A
LYS
227
n
141
LYS
227
A
SER
228
n
142
SER
228
A
PRO
229
n
143
PRO
229
A
ALA
230
n
144
ALA
230
A
LEU
231
n
145
LEU
231
A
SER
232
n
146
SER
232
A
SER
233
n
147
SER
233
A
TRP
234
n
148
TRP
234
A
GLY
235
n
149
GLY
235
A
ASP
236
n
150
ASP
236
A
PRO
237
n
151
PRO
237
A
VAL
238
n
152
VAL
238
A
LEU
239
n
153
LEU
239
A
LEU
240
n
154
LEU
240
A
LYS
241
n
155
LYS
241
A
THR
242
n
156
THR
242
A
ASP
243
n
157
ASP
243
A
VAL
244
n
158
VAL
244
A
PRO
245
n
159
PRO
245
A
LEU
246
n
160
LEU
246
A
SER
247
n
161
SER
247
A
SER
248
n
162
SER
248
A
ALA
249
n
163
ALA
249
A
n
164
250
A
n
1
87
B
n
2
88
B
n
3
89
B
n
4
90
B
n
5
91
B
n
6
92
B
n
7
93
B
n
8
94
B
n
9
95
B
n
10
96
B
ARG
97
n
11
ARG
97
B
VAL
98
n
12
VAL
98
B
LEU
99
n
13
LEU
99
B
ASP
100
n
14
ASP
100
B
VAL
101
n
15
VAL
101
B
GLU
102
n
16
GLU
102
B
VAL
103
n
17
VAL
103
B
TYR
104
n
18
TYR
104
B
SER
105
n
19
SER
105
B
SER
106
n
20
SER
106
B
ARG
107
n
21
ARG
107
B
SER
108
n
22
SER
108
B
LYS
109
n
23
LYS
109
B
VAL
110
n
24
VAL
110
B
TYR
111
n
25
TYR
111
B
VAL
112
n
26
VAL
112
B
ALA
113
n
27
ALA
113
B
VAL
114
n
28
VAL
114
B
ASP
115
n
29
ASP
115
B
GLY
116
n
30
GLY
116
B
THR
117
n
31
THR
117
B
THR
118
n
32
THR
118
B
VAL
119
n
33
VAL
119
B
LEU
120
n
34
LEU
120
B
GLU
121
n
35
GLU
121
B
ASP
122
n
36
ASP
122
B
GLU
123
n
37
GLU
123
B
ALA
124
n
38
ALA
124
B
ARG
125
n
39
ARG
125
B
GLU
126
n
40
GLU
126
B
GLN
127
n
41
GLN
127
B
GLY
128
n
42
GLY
128
B
ARG
129
n
43
ARG
129
B
GLY
130
n
44
GLY
130
B
ILE
131
n
45
ILE
131
B
HIS
132
n
46
HIS
132
B
VAL
133
n
47
VAL
133
B
ILE
134
n
48
ILE
134
B
VAL
135
n
49
VAL
135
B
LEU
136
n
50
LEU
136
B
ASN
137
n
51
ASN
137
B
GLN
138
n
52
GLN
138
B
ALA
139
n
53
ALA
139
B
THR
140
n
54
THR
140
B
GLY
141
n
55
GLY
141
B
HIS
142
n
56
HIS
142
B
VAL
143
n
57
VAL
143
B
MET
144
n
58
MET
144
B
ALA
145
n
59
ALA
145
B
LYS
146
n
60
LYS
146
B
ARG
147
n
61
ARG
147
B
VAL
148
n
62
VAL
148
B
PHE
149
n
63
PHE
149
B
ASP
150
n
64
ASP
150
B
THR
151
n
65
THR
151
B
TYR
152
n
66
TYR
152
B
SER
153
n
67
SER
153
B
PRO
154
n
68
PRO
154
B
HIS
155
n
69
HIS
155
B
GLU
156
n
70
GLU
156
B
ASP
157
n
71
ASP
157
B
GLU
158
n
72
GLU
158
B
ALA
159
n
73
ALA
159
B
MET
160
n
74
MET
160
B
VAL
161
n
75
VAL
161
B
LEU
162
n
76
LEU
162
B
PHE
163
n
77
PHE
163
B
LEU
164
n
78
LEU
164
B
ASN
165
n
79
ASN
165
B
MET
166
n
80
MET
166
B
VAL
167
n
81
VAL
167
B
ALA
168
n
82
ALA
168
B
PRO
169
n
83
PRO
169
B
GLY
170
n
84
GLY
170
B
ARG
171
n
85
ARG
171
B
VAL
172
n
86
VAL
172
B
LEU
173
n
87
LEU
173
B
ILE
174
n
88
ILE
174
B
CYS
175
n
89
CYS
175
B
THR
176
n
90
THR
176
B
VAL
177
n
91
VAL
177
B
LYS
178
n
92
LYS
178
B
ASP
179
n
93
ASP
179
B
GLU
180
n
94
GLU
180
B
GLY
181
n
95
GLY
181
B
SER
182
n
96
SER
182
B
PHE
183
n
97
PHE
183
B
HIS
184
n
98
HIS
184
B
LEU
185
n
99
LEU
185
B
LYS
186
n
100
LYS
186
B
ASP
187
n
101
ASP
187
B
THR
188
n
102
THR
188
B
ALA
189
n
103
ALA
189
B
LYS
190
n
104
LYS
190
B
ALA
191
n
105
ALA
191
B
LEU
192
n
106
LEU
192
B
LEU
193
n
107
LEU
193
B
ARG
194
n
108
ARG
194
B
SER
195
n
109
SER
195
B
LEU
196
n
110
LEU
196
B
GLY
197
n
111
GLY
197
B
SER
198
n
112
SER
198
B
GLN
199
n
113
GLN
199
B
ALA
200
n
114
ALA
200
B
GLY
201
n
115
GLY
201
B
PRO
202
n
116
PRO
202
B
ALA
203
n
117
ALA
203
B
LEU
204
n
118
LEU
204
B
GLY
205
n
119
GLY
205
B
TRP
206
n
120
TRP
206
B
ARG
207
n
121
ARG
207
B
ASP
208
n
122
ASP
208
B
THR
209
n
123
THR
209
B
TRP
210
n
124
TRP
210
B
ALA
211
n
125
ALA
211
B
PHE
212
n
126
PHE
212
B
VAL
213
n
127
VAL
213
B
GLY
214
n
128
GLY
214
B
ARG
215
n
129
ARG
215
B
LYS
216
n
130
LYS
216
B
GLY
217
n
131
GLY
217
B
GLY
218
n
132
GLY
218
B
PRO
219
n
133
PRO
219
B
VAL
220
n
134
VAL
220
B
PHE
221
n
135
PHE
221
B
GLY
222
n
136
GLY
222
B
GLU
223
n
137
GLU
223
B
LYS
224
n
138
LYS
224
B
HIS
225
n
139
HIS
225
B
SER
226
n
140
SER
226
B
LYS
227
n
141
LYS
227
B
SER
228
n
142
SER
228
B
PRO
229
n
143
PRO
229
B
ALA
230
n
144
ALA
230
B
LEU
231
n
145
LEU
231
B
SER
232
n
146
SER
232
B
SER
233
n
147
SER
233
B
TRP
234
n
148
TRP
234
B
GLY
235
n
149
GLY
235
B
ASP
236
n
150
ASP
236
B
PRO
237
n
151
PRO
237
B
VAL
238
n
152
VAL
238
B
LEU
239
n
153
LEU
239
B
LEU
240
n
154
LEU
240
B
LYS
241
n
155
LYS
241
B
THR
242
n
156
THR
242
B
ASP
243
n
157
ASP
243
B
VAL
244
n
158
VAL
244
B
PRO
245
n
159
PRO
245
B
LEU
246
n
160
LEU
246
B
SER
247
n
161
SER
247
B
SER
248
n
162
SER
248
B
n
163
249
B
n
164
250
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
0
0
7480
210
-1
7470
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
117
A
O
THR
31
A
N
VAL
114
A
N
VAL
28
A
O
TYR
111
A
O
TYR
25
A
N
TYR
104
A
N
TYR
18
A
N
VAL
103
A
N
VAL
17
A
O
LEU
240
A
O
LEU
154
A
O
MET
144
A
O
MET
58
A
N
VAL
135
A
N
VAL
49
A
N
HIS
132
A
N
HIS
46
A
O
THR
176
A
O
THR
90
A
N
LEU
173
A
N
LEU
87
A
O
GLY
214
A
O
GLY
128
A
N
VAL
213
A
N
VAL
127
A
O
GLY
222
A
O
GLY
136
B
O
VAL
119
B
O
VAL
33
B
N
VAL
112
B
N
VAL
26
B
O
TYR
111
B
O
TYR
25
B
N
TYR
104
B
N
TYR
18
B
N
LEU
99
B
N
LEU
13
B
O
VAL
244
B
O
VAL
158
B
O
MET
144
B
O
MET
58
B
N
VAL
135
B
N
VAL
49
B
N
HIS
132
B
N
HIS
46
B
O
THR
176
B
O
THR
90
B
N
LEU
173
B
N
LEU
87
B
O
GLY
214
B
O
GLY
128
B
N
VAL
213
B
N
VAL
127
B
O
GLY
222
B
O
GLY
136
1
A
HOH
622
K
HOH
1
A
GLY
87
A
GLY
1
1
Y
1
A
PRO
88
A
PRO
2
1
Y
1
A
LEU
89
A
LEU
3
1
Y
1
A
GLY
90
A
GLY
4
1
Y
1
A
SER
91
A
SER
5
1
Y
1
A
GLY
92
A
GLY
6
1
Y
1
A
SER
93
A
SER
7
1
Y
1
A
GLY
94
A
GLY
8
1
Y
1
A
PRO
95
A
PRO
9
1
Y
1
A
ARG
96
A
ARG
10
1
Y
1
A
GLU
250
A
GLU
164
1
Y
1
B
GLY
87
B
GLY
1
1
Y
1
B
PRO
88
B
PRO
2
1
Y
1
B
LEU
89
B
LEU
3
1
Y
1
B
GLY
90
B
GLY
4
1
Y
1
B
SER
91
B
SER
5
1
Y
1
B
GLY
92
B
GLY
6
1
Y
1
B
SER
93
B
SER
7
1
Y
1
B
GLY
94
B
GLY
8
1
Y
1
B
PRO
95
B
PRO
9
1
Y
1
B
ARG
96
B
ARG
10
1
Y
1
B
ALA
249
B
ALA
163
1
Y
1
B
GLU
250
B
GLU
164
1
Y
1
B
B
O
O
HOH
HOH
405
421
2.09
1
B
B
OE2
O
GLU
HOH
158
401
2.10
1
A
A
OH
O
TYR
HOH
152
401
2.10
1
B
B
O
O
HOH
HOH
469
542
2.12
1
A
A
O
O
HOH
HOH
557
574
2.16
1
A
A
O
O
HOH
HOH
578
598
2.17
1
A
B
O
O
HOH
HOH
573
540
2.18
1
A
A
O
O
HOH
HOH
467
486
2.18
1
A
B
O
O
HOH
HOH
486
585
2.04
1_555
4_544
1
A
A
O
O
HOH
HOH
617
617
2.14
1_555
2_555
1
A
HIS
155
82.08
-17.47
1
A
ASP
179
73.04
-77.61
1
B
GLU
126
-132.51
-36.37
1
B
HIS
155
81.51
-13.27
1
B
ASP
179
72.25
-73.87
0.1755
0.1462
0.1469
1.300
35.065
2000
83572
2.39
99.99
0.14
1
FREE R-VALUE
1.35
16.44
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.300
35.065
428
2836
75
0
2333
0.008
2472
1.047
3341
21.058
907
0.095
377
0.006
420
0.2742
0.2365
1.3325
140
5737
100.00
0.2725
0.2226
1.3685
143
5789
100.00
0.2818
0.1985
1.4088
141
5757
100.00
0.2479
0.1755
1.4543
140
5734
100.00
0.1960
0.1512
1.5063
142
5768
100.00
0.1939
0.1373
1.5666
141
5784
100.00
0.1840
0.1285
1.6379
143
5801
100.00
0.1774
0.1165
1.7242
142
5803
100.00
0.1406
0.1161
1.8322
142
5806
100.00
0.1698
0.1149
1.9737
143
5819
100.00
0.1448
0.1199
2.1723
143
5821
100.00
0.1729
0.1365
2.4866
143
5872
100.00
0.1822
0.1558
3.1325
146
5934
100.00
0.1577
0.1586
35.0772
151
6147
100.00
1.30
45.8
5GGK
83588
1
18.9
12.4
99.9
1.30
1.32
1.4
1
4.8
97.5
refinement
PHENIX
(1.10.1_2155: ???)
data reduction
XDS
data scaling
Aimless
phasing
PHASER
N
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Man-beta-pNP
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
2
N
N
3
N
N
5
N
N
6
N
N
6
N
N
A
HIS
155
A
HIS
69
HELX_P
A
VAL
167
A
VAL
81
1
AA1
13
A
LYS
186
A
LYS
100
HELX_P
A
LEU
196
A
LEU
110
1
AA2
11
A
ALA
200
A
ALA
114
HELX_P
A
LEU
204
A
LEU
118
5
AA3
5
B
HIS
155
B
HIS
69
HELX_P
B
VAL
167
B
VAL
81
1
AA4
13
B
LYS
186
B
LYS
100
HELX_P
B
LEU
196
B
LEU
110
1
AA5
11
B
ALA
200
B
ALA
114
HELX_P
B
LEU
204
B
LEU
118
5
AA6
5
SUGAR BINDING PROTEIN
glycosyltransferease, O-mannosylation, alpha-dystroglycan, SUGAR BINDING PROTEIN
A
GLY
218
A
GLY
132
1
A
PRO
219
A
PRO
133
-0.69
B
GLY
218
B
GLY
132
1
B
PRO
219
B
PRO
133
1.23
PMGT1_HUMAN
UNP
1
92
Q8WZA1
GSGPRRVLDVEVYSSRSKVYVAVDGTTVLEDEAREQGRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGR
VLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTWAFVGRKGGPVFGEKHSKSPALSSWGDPVLLKTDVPLSSAE
92
250
5GGK
92
250
Q8WZA1
A
1
6
164
92
250
5GGK
92
250
Q8WZA1
B
1
6
164
1
expression tag
GLY
87
5GGK
A
Q8WZA1
UNP
1
1
expression tag
PRO
88
5GGK
A
Q8WZA1
UNP
2
1
expression tag
LEU
89
5GGK
A
Q8WZA1
UNP
3
1
expression tag
GLY
90
5GGK
A
Q8WZA1
UNP
4
1
expression tag
SER
91
5GGK
A
Q8WZA1
UNP
5
2
expression tag
GLY
87
5GGK
B
Q8WZA1
UNP
1
2
expression tag
PRO
88
5GGK
B
Q8WZA1
UNP
2
2
expression tag
LEU
89
5GGK
B
Q8WZA1
UNP
3
2
expression tag
GLY
90
5GGK
B
Q8WZA1
UNP
4
2
expression tag
SER
91
5GGK
B
Q8WZA1
UNP
5
4
5
4
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
117
A
THR
31
A
ASP
122
A
ASP
36
A
VAL
110
A
VAL
24
A
VAL
114
A
VAL
28
A
VAL
98
A
VAL
12
A
SER
105
A
SER
19
A
VAL
238
A
VAL
152
A
PRO
245
A
PRO
159
A
VAL
143
A
VAL
57
A
PHE
149
A
PHE
63
A
GLY
130
A
GLY
44
A
LEU
136
A
LEU
50
A
VAL
172
A
VAL
86
A
LYS
178
A
LYS
92
A
THR
209
A
THR
123
A
ARG
215
A
ARG
129
A
VAL
220
A
VAL
134
A
SER
226
A
SER
140
B
THR
117
B
THR
31
B
ASP
122
B
ASP
36
B
VAL
110
B
VAL
24
B
VAL
114
B
VAL
28
B
VAL
98
B
VAL
12
B
SER
105
B
SER
19
B
VAL
238
B
VAL
152
B
PRO
245
B
PRO
159
B
VAL
143
B
VAL
57
B
PHE
149
B
PHE
63
B
GLY
130
B
GLY
44
B
LEU
136
B
LEU
50
B
VAL
172
B
VAL
86
B
LYS
178
B
LYS
92
B
THR
209
B
THR
123
B
ARG
215
B
ARG
129
B
VAL
220
B
VAL
134
B
SER
226
B
SER
140
18
P 2 21 21