0.040437
0.012009
0.004791
0.000000
0.039544
0.006688
0.000000
0.000000
0.022529
0.00000
0.00000
0.00000
Gao, S.
Pan, M.
Zheng, Y.
Liu, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
98.07
93.85
106.54
24.730
26.380
45.120
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2
89.093
D-ALANINE
D-peptide linking
C6 H15 N4 O2 1
175.209
D-ARGININE
D-peptide linking
C4 H7 N O4
133.103
D-ASPARTIC ACID
D-peptide linking
C5 H9 N O4
147.129
D-GLUTAMIC ACID
D-peptide linking
C5 H10 N2 O3
146.144
D-GLUTAMINE
D-peptide linking
C6 H10 N3 O2 1
156.162
D-HISTIDINE
D-peptide linking
C6 H13 N O2
131.173
D-ISOLEUCINE
D-peptide linking
C6 H13 N O2
131.173
D-LEUCINE
D-peptide linking
C6 H14 N2 O2
146.188
D-LYSINE
D-peptide linking
C6 H13 N O2
131.173
D-NORLEUCINE
D-peptide linking
C9 H11 N O2
165.189
D-PHENYLALANINE
D-peptide linking
C5 H9 N O2
115.130
D-PROLINE
D-peptide linking
C4 H8 N2 O3
132.118
D-ASPARAGINE
D-peptide linking
C3 H7 N O3
105.093
D-SERINE
D-peptide linking
C4 H9 N O3
119.119
D-THREONINE
D-peptide linking
C9 H11 N O3
181.189
D-TYROSINE
D-peptide linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
C
N
78
N
O
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
N
N
88
R
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
N
96
N
C
N
97
N
O
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
R
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
R
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
R
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
N
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
R
C
N
171
N
C
N
172
N
O
N
173
N
C
Y
174
N
C
Y
175
N
N
Y
176
N
C
Y
177
N
C
Y
178
N
N
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
R
C
N
192
N
C
N
193
N
O
N
194
R
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
R
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
O
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
R
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
N
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
R
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
R
C
N
282
N
C
N
283
N
O
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
R
C
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
R
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
N
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
R
C
N
339
N
C
N
340
N
O
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
R
C
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
R
C
N
370
N
C
N
371
N
O
N
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
R
C
N
394
N
C
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
O
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
C
N
417
N
C
N
418
N
O
N
419
N
N
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
N
C
N
452
N
C
N
453
N
O
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
N
C
Y
465
N
C
Y
466
N
N
Y
467
N
C
Y
468
N
C
Y
469
N
N
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
N
N
485
S
C
N
486
N
C
N
487
N
O
N
488
S
C
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
N
N
507
S
C
N
508
N
C
N
509
N
O
N
510
N
C
N
511
N
C
N
512
N
C
N
513
N
C
N
514
N
O
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
N
N
529
S
C
N
530
N
C
N
531
N
O
N
532
N
C
N
533
N
C
N
534
N
C
N
535
N
C
N
536
N
N
N
537
N
O
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
N
N
554
S
C
N
555
N
C
N
556
N
O
N
557
N
C
N
558
N
C
N
559
N
S
N
560
N
C
N
561
N
O
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
N
N
574
S
C
N
575
N
C
N
576
N
O
N
577
N
C
Y
578
N
C
Y
579
N
C
Y
580
N
C
Y
581
N
C
Y
582
N
C
Y
583
N
C
N
584
N
O
N
585
N
H
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
H
N
596
N
N
N
597
S
C
N
598
N
C
N
599
N
O
N
600
N
C
N
601
N
C
N
602
N
C
N
603
N
O
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
N
N
614
S
C
N
615
N
C
N
616
N
O
N
617
N
C
N
618
N
O
N
619
N
O
N
620
N
H
N
621
N
H
N
622
N
H
N
623
N
H
N
624
N
H
N
625
N
H
N
626
N
H
N
627
N
N
N
628
S
C
N
629
N
C
N
630
N
O
N
631
R
C
N
632
N
O
N
633
N
C
N
634
N
O
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
H
N
639
N
H
N
640
N
H
N
641
N
H
N
642
N
H
N
643
N
H
N
644
N
N
N
645
S
C
N
646
N
C
N
647
N
O
N
648
N
C
Y
649
N
C
Y
650
N
C
Y
651
N
C
Y
652
N
C
Y
653
N
C
Y
654
N
C
N
655
N
O
N
656
N
O
N
657
N
H
N
658
N
H
N
659
N
H
N
660
N
H
N
661
N
H
N
662
N
H
N
663
N
H
N
664
N
H
N
665
N
H
N
666
N
H
N
667
N
H
N
668
N
N
N
669
S
C
N
670
N
C
N
671
N
O
N
672
N
C
N
673
N
C
N
674
N
C
N
675
N
O
N
676
N
H
N
677
N
H
N
678
N
H
N
679
N
H
N
680
N
H
N
681
N
H
N
682
N
H
N
683
N
H
N
684
N
H
N
685
N
H
N
686
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
Y
171
N
sing
Y
172
N
doub
Y
173
N
doub
N
174
N
sing
Y
175
N
sing
N
176
N
sing
Y
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
Y
279
N
doub
Y
280
N
sing
Y
281
N
sing
N
282
N
sing
Y
283
N
doub
N
284
N
sing
Y
285
N
doub
N
286
N
sing
Y
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
sing
Y
452
N
doub
Y
453
N
doub
N
454
N
sing
Y
455
N
sing
N
456
N
sing
Y
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
doub
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
doub
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
doub
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
doub
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
Y
559
N
doub
Y
560
N
sing
Y
561
N
sing
N
562
N
sing
Y
563
N
doub
N
564
N
sing
Y
565
N
doub
N
566
N
sing
Y
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
doub
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
doub
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
doub
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
N
622
N
sing
N
623
N
doub
N
624
N
sing
N
625
N
sing
N
626
N
sing
N
627
N
sing
Y
628
N
doub
Y
629
N
sing
Y
630
N
sing
N
631
N
sing
Y
632
N
doub
N
633
N
sing
Y
634
N
doub
N
635
N
sing
Y
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
N
645
N
sing
N
646
N
sing
N
647
N
doub
N
648
N
sing
N
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
sing
N
657
N
sing
N
658
N
sing
US
J.Am.Chem.Soc.
JACSAT
1520-5126
138
14497
14502
10.1021/jacs.6b09545
27768314
Monomer/Oligomer Quasi-Racemic Protein Crystallography
2016
10.2210/pdb5gob/pdb
pdb_00005gob
100
1
PIXEL
2015-11-15
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
21-ID-E
APS
0.9792
SYNCHROTRON
APS BEAMLINE 21-ID-E
8576.831
Ubiquitin
1
syn
polymer
8551.744
D-ubiquitin
1
syn
polymer
18.015
water
191
nat
water
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
A
polypeptide(L)
no
yes
(DNE)(DGN)(DIL)(DPN)(DVA)(DLY)(DTH)(DLE)(DTH)G(DLY)(DTH)(DIL)(DTH)(DLE)(DGL)
(DVA)(DGL)(DPR)(DSN)(DAS)(DTH)(DIL)(DGL)(DSG)(DVA)(DLY)(DAL)(DLY)(DIL)(DGN)(DAS)
(DLY)(DGL)G(DIL)(DPR)(DPR)(DAS)(DGN)(DGN)(DAR)(DLE)(DIL)(DPN)(DAL)G(DLY)(DGN)
(DLE)(DGL)(DAS)G(DAR)(DTH)(DLE)(DSN)(DAS)(DTY)(DSG)(DIL)(DGN)(DLY)(DGL)(DSN)
(DTH)(DLE)(DHI)(DLE)(DVA)(DLE)(DAR)(DLE)(DAR)GG
LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
B
polypeptide(D)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
1.62
24.31
VAPOR DIFFUSION, SITTING DROP
5.9
0.2M Magnesium chloride hexahydrate, 20% PEG 3350, PH5.9
289
database_2
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Database references
Database references
Derived calculations
Data collection
Refinement description
Data collection
1
0
2016-11-02
1
1
2016-11-16
1
2
2022-02-09
1
3
2023-11-08
1
4
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_oper_list.symmetry_operation
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
China
National Basic Research Program of China
2013CB932800
N
PDBJ
Y
PDBJ
2016-07-26
REL
REL
HOH
water
9606
human
Homo sapiens
sample
1
76
9606
human
Homo sapiens
sample
1UBQ
PDB
experimental model
HOH
117
3
HOH
HOH
101
A
HOH
101
3
HOH
HOH
102
A
HOH
187
3
HOH
HOH
103
A
HOH
93
3
HOH
HOH
104
A
HOH
88
3
HOH
HOH
105
A
HOH
33
3
HOH
HOH
106
A
HOH
65
3
HOH
HOH
107
A
HOH
79
3
HOH
HOH
108
A
HOH
183
3
HOH
HOH
109
A
HOH
38
3
HOH
HOH
110
A
HOH
22
3
HOH
HOH
111
A
HOH
78
3
HOH
HOH
112
A
HOH
6
3
HOH
HOH
113
A
HOH
132
3
HOH
HOH
114
A
HOH
37
3
HOH
HOH
115
A
HOH
45
3
HOH
HOH
116
A
HOH
63
3
HOH
HOH
117
A
HOH
133
3
HOH
HOH
118
A
HOH
64
3
HOH
HOH
119
A
HOH
17
3
HOH
HOH
120
A
HOH
21
3
HOH
HOH
121
A
HOH
128
3
HOH
HOH
122
A
HOH
50
3
HOH
HOH
123
A
HOH
10
3
HOH
HOH
124
A
HOH
20
3
HOH
HOH
125
A
HOH
49
3
HOH
HOH
126
A
HOH
4
3
HOH
HOH
127
A
HOH
91
3
HOH
HOH
128
A
HOH
35
3
HOH
HOH
129
A
HOH
77
3
HOH
HOH
130
A
HOH
27
3
HOH
HOH
131
A
HOH
61
3
HOH
HOH
132
A
HOH
159
3
HOH
HOH
133
A
HOH
166
3
HOH
HOH
134
A
HOH
118
3
HOH
HOH
135
A
HOH
59
3
HOH
HOH
136
A
HOH
161
3
HOH
HOH
137
A
HOH
66
3
HOH
HOH
138
A
HOH
100
3
HOH
HOH
139
A
HOH
90
3
HOH
HOH
140
A
HOH
121
3
HOH
HOH
141
A
HOH
126
3
HOH
HOH
142
A
HOH
71
3
HOH
HOH
143
A
HOH
16
3
HOH
HOH
144
A
HOH
82
3
HOH
HOH
145
A
HOH
39
3
HOH
HOH
146
A
HOH
170
3
HOH
HOH
147
A
HOH
31
3
HOH
HOH
148
A
HOH
104
3
HOH
HOH
149
A
HOH
171
3
HOH
HOH
150
A
HOH
172
3
HOH
HOH
151
A
HOH
177
3
HOH
HOH
152
A
HOH
51
3
HOH
HOH
153
A
HOH
156
3
HOH
HOH
154
A
HOH
85
3
HOH
HOH
155
A
HOH
74
3
HOH
HOH
156
A
HOH
29
3
HOH
HOH
157
A
HOH
150
3
HOH
HOH
158
A
HOH
174
3
HOH
HOH
159
A
HOH
190
3
HOH
HOH
160
A
HOH
30
3
HOH
HOH
161
A
HOH
122
3
HOH
HOH
162
A
HOH
1
3
HOH
HOH
163
A
HOH
106
3
HOH
HOH
164
A
HOH
56
3
HOH
HOH
165
A
HOH
155
3
HOH
HOH
166
A
HOH
62
3
HOH
HOH
167
A
HOH
108
3
HOH
HOH
168
A
HOH
12
3
HOH
HOH
169
A
HOH
191
3
HOH
HOH
170
A
HOH
153
3
HOH
HOH
171
A
HOH
175
3
HOH
HOH
172
A
HOH
147
3
HOH
HOH
173
A
HOH
86
3
HOH
HOH
174
A
HOH
75
3
HOH
HOH
175
A
HOH
148
3
HOH
HOH
176
A
HOH
168
3
HOH
HOH
177
A
HOH
137
3
HOH
HOH
178
A
HOH
176
3
HOH
HOH
179
A
HOH
103
3
HOH
HOH
180
A
HOH
36
3
HOH
HOH
181
A
HOH
115
3
HOH
HOH
182
A
HOH
188
3
HOH
HOH
183
A
HOH
164
3
HOH
HOH
184
A
HOH
67
3
HOH
HOH
185
A
HOH
109
3
HOH
HOH
186
A
HOH
162
3
HOH
HOH
187
A
HOH
154
3
HOH
HOH
188
A
HOH
48
3
HOH
HOH
189
A
HOH
135
3
HOH
HOH
190
A
HOH
70
3
HOH
HOH
191
A
HOH
163
3
HOH
HOH
192
A
HOH
151
3
HOH
HOH
193
A
HOH
157
3
HOH
HOH
101
B
HOH
99
3
HOH
HOH
102
B
HOH
181
3
HOH
HOH
103
B
HOH
58
3
HOH
HOH
104
B
HOH
160
3
HOH
HOH
105
B
HOH
114
3
HOH
HOH
106
B
HOH
120
3
HOH
HOH
107
B
HOH
149
3
HOH
HOH
108
B
HOH
178
3
HOH
HOH
109
B
HOH
180
3
HOH
HOH
110
B
HOH
47
3
HOH
HOH
111
B
HOH
32
3
HOH
HOH
112
B
HOH
72
3
HOH
HOH
113
B
HOH
134
3
HOH
HOH
114
B
HOH
34
3
HOH
HOH
115
B
HOH
89
3
HOH
HOH
116
B
HOH
144
3
HOH
HOH
117
B
HOH
26
3
HOH
HOH
118
B
HOH
15
3
HOH
HOH
119
B
HOH
81
3
HOH
HOH
120
B
HOH
129
3
HOH
HOH
121
B
HOH
11
3
HOH
HOH
122
B
HOH
5
3
HOH
HOH
123
B
HOH
76
3
HOH
HOH
124
B
HOH
69
3
HOH
HOH
125
B
HOH
119
3
HOH
HOH
126
B
HOH
9
3
HOH
HOH
127
B
HOH
3
3
HOH
HOH
128
B
HOH
25
3
HOH
HOH
129
B
HOH
125
3
HOH
HOH
130
B
HOH
54
3
HOH
HOH
131
B
HOH
92
3
HOH
HOH
132
B
HOH
87
3
HOH
HOH
133
B
HOH
73
3
HOH
HOH
134
B
HOH
124
3
HOH
HOH
135
B
HOH
28
3
HOH
HOH
136
B
HOH
43
3
HOH
HOH
137
B
HOH
80
3
HOH
HOH
138
B
HOH
23
3
HOH
HOH
139
B
HOH
95
3
HOH
HOH
140
B
HOH
42
3
HOH
HOH
141
B
HOH
143
3
HOH
HOH
142
B
HOH
138
3
HOH
HOH
143
B
HOH
53
3
HOH
HOH
144
B
HOH
55
3
HOH
HOH
145
B
HOH
110
3
HOH
HOH
146
B
HOH
116
3
HOH
HOH
147
B
HOH
13
3
HOH
HOH
148
B
HOH
189
3
HOH
HOH
149
B
HOH
97
3
HOH
HOH
150
B
HOH
14
3
HOH
HOH
151
B
HOH
112
3
HOH
HOH
152
B
HOH
19
3
HOH
HOH
153
B
HOH
44
3
HOH
HOH
154
B
HOH
105
3
HOH
HOH
155
B
HOH
146
3
HOH
HOH
156
B
HOH
184
3
HOH
HOH
157
B
HOH
167
3
HOH
HOH
158
B
HOH
84
3
HOH
HOH
159
B
HOH
152
3
HOH
HOH
160
B
HOH
52
3
HOH
HOH
161
B
HOH
83
3
HOH
HOH
162
B
HOH
107
3
HOH
HOH
163
B
HOH
158
3
HOH
HOH
164
B
HOH
94
3
HOH
HOH
165
B
HOH
7
3
HOH
HOH
166
B
HOH
18
3
HOH
HOH
167
B
HOH
24
3
HOH
HOH
168
B
HOH
123
3
HOH
HOH
169
B
HOH
98
3
HOH
HOH
170
B
HOH
57
3
HOH
HOH
171
B
HOH
169
3
HOH
HOH
172
B
HOH
179
3
HOH
HOH
173
B
HOH
68
3
HOH
HOH
174
B
HOH
2
3
HOH
HOH
175
B
HOH
8
3
HOH
HOH
176
B
HOH
41
3
HOH
HOH
177
B
HOH
130
3
HOH
HOH
178
B
HOH
140
3
HOH
HOH
179
B
HOH
60
3
HOH
HOH
180
B
HOH
96
3
HOH
HOH
181
B
HOH
102
3
HOH
HOH
182
B
HOH
131
3
HOH
HOH
183
B
HOH
145
3
HOH
HOH
184
B
HOH
173
3
HOH
HOH
185
B
HOH
182
3
HOH
HOH
186
B
HOH
46
3
HOH
HOH
187
B
HOH
141
3
HOH
HOH
188
B
HOH
185
3
HOH
HOH
189
B
HOH
127
3
HOH
HOH
190
B
HOH
113
3
HOH
HOH
191
B
HOH
40
3
HOH
HOH
192
B
HOH
165
3
HOH
HOH
193
B
HOH
139
3
HOH
HOH
194
B
HOH
136
3
HOH
HOH
195
B
HOH
111
3
HOH
HOH
196
B
HOH
142
3
HOH
HOH
197
B
HOH
186
3
HOH
HOH
198
B
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
GLU
16
n
16
GLU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
SER
20
n
20
SER
20
A
ASP
21
n
21
ASP
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
GLU
24
n
24
GLU
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
ILE
30
n
30
ILE
30
A
GLN
31
n
31
GLN
31
A
ASP
32
n
32
ASP
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
PRO
38
n
38
PRO
38
A
ASP
39
n
39
ASP
39
A
GLN
40
n
40
GLN
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ILE
44
n
44
ILE
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
GLU
51
n
51
GLU
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
ASP
58
n
58
ASP
58
A
TYR
59
n
59
TYR
59
A
ASN
60
n
60
ASN
60
A
ILE
61
n
61
ILE
61
A
GLN
62
n
62
GLN
62
A
LYS
63
n
63
LYS
63
A
GLU
64
n
64
GLU
64
A
SER
65
n
65
SER
65
A
THR
66
n
66
THR
66
A
LEU
67
n
67
LEU
67
A
HIS
68
n
68
HIS
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
ARG
72
n
72
ARG
72
A
LEU
73
n
73
LEU
73
A
ARG
74
n
74
ARG
74
A
GLY
75
n
75
GLY
75
A
GLY
76
n
76
GLY
76
A
DNE
1
n
1
DNE
1
B
DGN
2
n
2
DGN
2
B
DIL
3
n
3
DIL
3
B
DPN
4
n
4
DPN
4
B
DVA
5
n
5
DVA
5
B
DLY
6
n
6
DLY
6
B
DTH
7
n
7
DTH
7
B
DLE
8
n
8
DLE
8
B
DTH
9
n
9
DTH
9
B
GLY
10
n
10
GLY
10
B
DLY
11
n
11
DLY
11
B
DTH
12
n
12
DTH
12
B
DIL
13
n
13
DIL
13
B
DTH
14
n
14
DTH
14
B
DLE
15
n
15
DLE
15
B
DGL
16
n
16
DGL
16
B
DVA
17
n
17
DVA
17
B
DGL
18
n
18
DGL
18
B
DPR
19
n
19
DPR
19
B
DSN
20
n
20
DSN
20
B
DAS
21
n
21
DAS
21
B
DTH
22
n
22
DTH
22
B
DIL
23
n
23
DIL
23
B
DGL
24
n
24
DGL
24
B
DSG
25
n
25
DSG
25
B
DVA
26
n
26
DVA
26
B
DLY
27
n
27
DLY
27
B
DAL
28
n
28
DAL
28
B
DLY
29
n
29
DLY
29
B
DIL
30
n
30
DIL
30
B
DGN
31
n
31
DGN
31
B
DAS
32
n
32
DAS
32
B
DLY
33
n
33
DLY
33
B
DGL
34
n
34
DGL
34
B
GLY
35
n
35
GLY
35
B
DIL
36
n
36
DIL
36
B
DPR
37
n
37
DPR
37
B
DPR
38
n
38
DPR
38
B
DAS
39
n
39
DAS
39
B
DGN
40
n
40
DGN
40
B
DGN
41
n
41
DGN
41
B
DAR
42
n
42
DAR
42
B
DLE
43
n
43
DLE
43
B
DIL
44
n
44
DIL
44
B
DPN
45
n
45
DPN
45
B
DAL
46
n
46
DAL
46
B
GLY
47
n
47
GLY
47
B
DLY
48
n
48
DLY
48
B
DGN
49
n
49
DGN
49
B
DLE
50
n
50
DLE
50
B
DGL
51
n
51
DGL
51
B
DAS
52
n
52
DAS
52
B
GLY
53
n
53
GLY
53
B
DAR
54
n
54
DAR
54
B
DTH
55
n
55
DTH
55
B
DLE
56
n
56
DLE
56
B
DSN
57
n
57
DSN
57
B
DAS
58
n
58
DAS
58
B
DTY
59
n
59
DTY
59
B
DSG
60
n
60
DSG
60
B
DIL
61
n
61
DIL
61
B
DGN
62
n
62
DGN
62
B
DLY
63
n
63
DLY
63
B
DGL
64
n
64
DGL
64
B
DSN
65
n
65
DSN
65
B
DTH
66
n
66
DTH
66
B
DLE
67
n
67
DLE
67
B
DHI
68
n
68
DHI
68
B
DLE
69
n
69
DLE
69
B
DVA
70
n
70
DVA
70
B
DLE
71
n
71
DLE
71
B
DAR
72
n
72
DAR
72
B
DLE
73
n
73
DLE
73
B
DAR
74
n
74
DAR
74
B
n
75
75
B
n
76
76
B
author_defined_assembly
2
dimeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_665
x+1,y+1,z
crystal symmetry operation
17.2200187249
25.2884278129
0.0000000000
A
O
LEU
15
A
O
LEU
15
A
N
ILE
3
A
N
ILE
3
A
N
LYS
6
A
N
LYS
6
A
O
LEU
67
A
O
LEU
67
A
O
HIS
68
A
O
HIS
68
A
N
ILE
44
A
N
ILE
44
A
N
PHE
45
A
N
PHE
45
A
O
LYS
48
A
O
LYS
48
B
O
DLE
15
B
O
DLE
15
B
N
DIL
3
B
N
DIL
3
B
N
DPN
4
B
N
DPN
4
B
O
DLE
67
B
O
DLE
67
B
O
DHI
68
B
O
DHI
68
B
N
DIL
44
B
N
DIL
44
B
N
DPN
45
B
N
DPN
45
B
O
DLY
48
B
O
DLY
48
1
B
GLY
75
B
GLY
75
1
Y
1
B
GLY
76
B
GLY
76
1
Y
1
A
A
O
O
HOH
HOH
118
152
1.94
1
B
B
OD1
O
DAS
HOH
32
101
2.03
1
B
B
O
O
HOH
HOH
103
180
2.08
1
A
A
OE2
O
GLU
HOH
18
101
2.09
1
A
A
O
O
GLY
HOH
76
102
2.10
1
B
B
NE2
O
DGN
HOH
62
102
2.12
1
B
B
NH1
O
DAR
HOH
72
103
2.19
1
A
B
O
O
HOH
HOH
192
198
1.88
1_555
1_566
1
A
A
NZ
C
LYS
GLY
6
76
2.03
1_555
1_665
1
B
B
O
O
HOH
HOH
164
188
2.05
1_555
1_545
1
B
B
O
O
HOH
HOH
170
179
2.19
1_555
1_455
1
B
DGL
64
-72.96
0.31
0.2285
0.1912
0.1931
1.153
44.388
1207
23459
5.15
61.80
0.14
1
FREE R-VALUE
1.98
MOLECULAR REPLACEMENT
35.93
0.90
1.11
1UBQ
1.153
44.388
191
1385
0
0
1194
0.005
1206
1.014
1622
19.345
478
0.079
194
0.004
208
0.4237
0.2771
1.1990
6
131
3.00
0.3836
0.2789
1.2535
33
569
14.00
0.2869
0.2404
1.3196
80
1289
32.00
0.2866
0.2343
1.4023
137
2173
56.00
0.2785
0.2053
1.5106
183
3562
89.00
0.2444
0.1823
1.6626
197
3597
90.00
0.2396
0.1801
1.9032
226
3550
89.00
0.1767
0.1873
2.3978
193
3653
92.00
0.2236
0.1873
44.4207
152
3728
92.00
1.153
44.39
5GOB
23485
0.066
1
11.25
3.54
62
0.749
1.16
1.20
1
3.09
refinement
PHENIX
(1.10.1_2155: ???)
N
Lys6-linked di-ubiquitin
1
N
N
2
N
N
3
N
N
3
N
N
A
THR
22
A
THR
22
HELX_P
A
GLY
35
A
GLY
35
1
AA1
14
A
PRO
37
A
PRO
37
HELX_P
A
ASP
39
A
ASP
39
5
AA2
3
A
LEU
56
A
LEU
56
HELX_P
A
ASN
60
A
ASN
60
5
AA3
5
B
DTH
22
B
DTH
22
HELX_P
B
GLY
35
B
GLY
35
1
AA4
14
B
DPR
37
B
DPR
37
HELX_P
B
DAS
39
B
DAS
39
5
AA5
3
B
DLE
56
B
DLE
56
HELX_P
B
DSG
60
B
DSG
60
5
AA6
5
covale
1.325
both
B
DNE
1
B
C
DNE
1
1_555
B
DGN
2
B
N
DGN
2
1_555
covale
1.330
both
B
DGN
2
B
C
DGN
2
1_555
B
DIL
3
B
N
DIL
3
1_555
covale
1.330
both
B
DIL
3
B
C
DIL
3
1_555
B
DPN
4
B
N
DPN
4
1_555
covale
1.329
both
B
DPN
4
B
C
DPN
4
1_555
B
DVA
5
B
N
DVA
5
1_555
covale
1.327
both
B
DVA
5
B
C
DVA
5
1_555
B
DLY
6
B
N
DLY
6
1_555
covale
1.333
both
B
DLY
6
B
C
DLY
6
1_555
B
DTH
7
B
N
DTH
7
1_555
covale
1.331
both
B
DTH
7
B
C
DTH
7
1_555
B
DLE
8
B
N
DLE
8
1_555
covale
1.331
both
B
DLE
8
B
C
DLE
8
1_555
B
DTH
9
B
N
DTH
9
1_555
covale
1.330
both
B
DTH
9
B
C
DTH
9
1_555
B
GLY
10
B
N
GLY
10
1_555
covale
1.328
both
B
GLY
10
B
C
GLY
10
1_555
B
DLY
11
B
N
DLY
11
1_555
covale
1.323
both
B
DLY
11
B
C
DLY
11
1_555
B
DTH
12
B
N
DTH
12
1_555
covale
1.330
both
B
DTH
12
B
C
DTH
12
1_555
B
DIL
13
B
N
DIL
13
1_555
covale
1.329
both
B
DIL
13
B
C
DIL
13
1_555
B
DTH
14
B
N
DTH
14
1_555
covale
1.332
both
B
DTH
14
B
C
DTH
14
1_555
B
DLE
15
B
N
DLE
15
1_555
covale
1.332
both
B
DLE
15
B
C
DLE
15
1_555
B
DGL
16
B
N
DGL
16
1_555
covale
1.332
both
B
DGL
16
B
C
DGL
16
1_555
B
DVA
17
B
N
DVA
17
1_555
covale
1.330
both
B
DVA
17
B
C
DVA
17
1_555
B
DGL
18
B
N
DGL
18
1_555
covale
1.343
both
B
DGL
18
B
C
DGL
18
1_555
B
DPR
19
B
N
DPR
19
1_555
covale
1.331
both
B
DPR
19
B
C
DPR
19
1_555
B
DSN
20
B
N
DSN
20
1_555
covale
1.331
both
B
DSN
20
B
C
DSN
20
1_555
B
DAS
21
B
N
DAS
21
1_555
covale
1.328
both
B
DAS
21
B
C
DAS
21
1_555
B
DTH
22
B
N
DTH
22
1_555
covale
1.327
both
B
DTH
22
B
C
DTH
22
1_555
B
DIL
23
B
N
DIL
23
1_555
covale
1.333
both
B
DIL
23
B
C
DIL
23
1_555
B
DGL
24
B
N
DGL
24
1_555
covale
1.331
both
B
DGL
24
B
C
DGL
24
1_555
B
DSG
25
B
N
DSG
25
1_555
covale
1.330
both
B
DSG
25
B
C
DSG
25
1_555
B
DVA
26
B
N
DVA
26
1_555
covale
1.327
both
B
DVA
26
B
C
DVA
26
1_555
B
DLY
27
B
N
DLY
27
1_555
covale
1.333
both
B
DLY
27
B
C
DLY
27
1_555
B
DAL
28
B
N
DAL
28
1_555
covale
1.330
both
B
DAL
28
B
C
DAL
28
1_555
B
DLY
29
B
N
DLY
29
1_555
covale
1.326
both
B
DLY
29
B
C
DLY
29
1_555
B
DIL
30
B
N
DIL
30
1_555
covale
1.326
both
B
DIL
30
B
C
DIL
30
1_555
B
DGN
31
B
N
DGN
31
1_555
covale
1.329
both
B
DGN
31
B
C
DGN
31
1_555
B
DAS
32
B
N
DAS
32
1_555
covale
1.322
both
B
DAS
32
B
C
DAS
32
1_555
B
DLY
33
B
N
DLY
33
1_555
covale
1.332
both
B
DLY
33
B
C
DLY
33
1_555
B
DGL
34
B
N
DGL
34
1_555
covale
1.328
both
B
DGL
34
B
C
DGL
34
1_555
B
GLY
35
B
N
GLY
35
1_555
covale
1.331
both
B
GLY
35
B
C
GLY
35
1_555
B
DIL
36
B
N
DIL
36
1_555
covale
1.341
both
B
DIL
36
B
C
DIL
36
1_555
B
DPR
37
B
N
DPR
37
1_555
covale
1.341
both
B
DPR
37
B
C
DPR
37
1_555
B
DPR
38
B
N
DPR
38
1_555
covale
1.333
both
B
DPR
38
B
C
DPR
38
1_555
B
DAS
39
B
N
DAS
39
1_555
covale
1.328
both
B
DAS
39
B
C
DAS
39
1_555
B
DGN
40
B
N
DGN
40
1_555
covale
1.331
both
B
DGN
40
B
C
DGN
40
1_555
B
DGN
41
B
N
DGN
41
1_555
covale
1.324
both
B
DGN
41
B
C
DGN
41
1_555
B
DAR
42
B
N
DAR
42
1_555
covale
1.331
both
B
DAR
42
B
C
DAR
42
1_555
B
DLE
43
B
N
DLE
43
1_555
covale
1.329
both
B
DLE
43
B
C
DLE
43
1_555
B
DIL
44
B
N
DIL
44
1_555
covale
1.329
both
B
DIL
44
B
C
DIL
44
1_555
B
DPN
45
B
N
DPN
45
1_555
covale
1.327
both
B
DPN
45
B
C
DPN
45
1_555
B
DAL
46
B
N
DAL
46
1_555
covale
1.332
both
B
DAL
46
B
C
DAL
46
1_555
B
GLY
47
B
N
GLY
47
1_555
covale
1.332
both
B
GLY
47
B
C
GLY
47
1_555
B
DLY
48
B
N
DLY
48
1_555
covale
1.326
both
B
DLY
48
B
C
DLY
48
1_555
B
DGN
49
B
N
DGN
49
1_555
covale
1.330
both
B
DGN
49
B
C
DGN
49
1_555
B
DLE
50
B
N
DLE
50
1_555
covale
1.329
both
B
DLE
50
B
C
DLE
50
1_555
B
DGL
51
B
N
DGL
51
1_555
covale
1.326
both
B
DGL
51
B
C
DGL
51
1_555
B
DAS
52
B
N
DAS
52
1_555
covale
1.328
both
B
DAS
52
B
C
DAS
52
1_555
B
GLY
53
B
N
GLY
53
1_555
covale
1.329
both
B
GLY
53
B
C
GLY
53
1_555
B
DAR
54
B
N
DAR
54
1_555
covale
1.331
both
B
DAR
54
B
C
DAR
54
1_555
B
DTH
55
B
N
DTH
55
1_555
covale
1.327
both
B
DTH
55
B
C
DTH
55
1_555
B
DLE
56
B
N
DLE
56
1_555
covale
1.329
both
B
DLE
56
B
C
DLE
56
1_555
B
DSN
57
B
N
DSN
57
1_555
covale
1.339
both
B
DSN
57
B
C
DSN
57
1_555
B
DAS
58
B
N
DAS
58
1_555
covale
1.331
both
B
DAS
58
B
C
DAS
58
1_555
B
DTY
59
B
N
DTY
59
1_555
covale
1.333
both
B
DTY
59
B
C
DTY
59
1_555
B
DSG
60
B
N
DSG
60
1_555
covale
1.325
both
B
DSG
60
B
C
DSG
60
1_555
B
DIL
61
B
N
DIL
61
1_555
covale
1.330
both
B
DIL
61
B
C
DIL
61
1_555
B
DGN
62
B
N
DGN
62
1_555
covale
1.329
both
B
DGN
62
B
C
DGN
62
1_555
B
DLY
63
B
N
DLY
63
1_555
covale
1.330
both
B
DLY
63
B
C
DLY
63
1_555
B
DGL
64
B
N
DGL
64
1_555
covale
1.332
both
B
DGL
64
B
C
DGL
64
1_555
B
DSN
65
B
N
DSN
65
1_555
covale
1.328
both
B
DSN
65
B
C
DSN
65
1_555
B
DTH
66
B
N
DTH
66
1_555
covale
1.323
both
B
DTH
66
B
C
DTH
66
1_555
B
DLE
67
B
N
DLE
67
1_555
covale
1.329
both
B
DLE
67
B
C
DLE
67
1_555
B
DHI
68
B
N
DHI
68
1_555
covale
1.330
both
B
DHI
68
B
C
DHI
68
1_555
B
DLE
69
B
N
DLE
69
1_555
covale
1.323
both
B
DLE
69
B
C
DLE
69
1_555
B
DVA
70
B
N
DVA
70
1_555
covale
1.328
both
B
DVA
70
B
C
DVA
70
1_555
B
DLE
71
B
N
DLE
71
1_555
covale
1.328
both
B
DLE
71
B
C
DLE
71
1_555
B
DAR
72
B
N
DAR
72
1_555
covale
1.323
both
B
DAR
72
B
C
DAR
72
1_555
B
DLE
73
B
N
DLE
73
1_555
covale
1.329
both
B
DLE
73
B
C
DLE
73
1_555
B
DAR
74
B
N
DAR
74
1_555
PROTEIN BINDING
polyubiquitin chains, quasi-racemic crystal, PROTEIN BINDING
UBB_HUMAN
UNP
1
1
P0CG47
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
5GOB
PDB
2
1
5GOB
1
76
5GOB
1
76
P0CG47
A
1
1
76
1
76
5GOB
1
76
5GOB
B
2
1
76
5
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
12
A
THR
12
A
GLU
16
A
GLU
16
A
GLN
2
A
GLN
2
A
THR
7
A
THR
7
A
THR
66
A
THR
66
A
LEU
71
A
LEU
71
A
GLN
41
A
GLN
41
A
PHE
45
A
PHE
45
A
LYS
48
A
LYS
48
A
GLN
49
A
GLN
49
B
DTH
12
B
DTH
12
B
DGL
16
B
DGL
16
B
DGN
2
B
DGN
2
B
DTH
7
B
DTH
7
B
DTH
66
B
DTH
66
B
DLE
71
B
DLE
71
B
DGN
41
B
DGN
41
B
DPN
45
B
DPN
45
B
DLY
48
B
DLY
48
B
DGN
49
B
DGN
49
1
P 1