0.018045
0.000000
0.007015
0.000000
0.012621
0.000000
0.000000
0.000000
0.015125
0.00000
0.00000
0.00000
Zhu, Y.
Ye, S.
Zhang, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
111.24
90.00
55.417
79.236
70.936
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
O
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
R
C
N
255
N
O
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
N
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
N
305
N
O
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
Y
264
N
doub
Y
265
N
sing
Y
266
N
sing
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
N
271
N
sing
Y
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
US
J. Virol.
JOVIAM
0825
1098-5514
91
10.1128/JVI.01445-16
27795416
Creating an Artificial Tail Anchor as a Novel Strategy To Enhance the Potency of Peptide-Based HIV Fusion Inhibitors
2017
10.2210/pdb5h0n/pdb
pdb_00005h0n
100
1
PIXEL
2016-04-27
DECTRIS PILATUS3 2M
SINGLE WAVELENGTH
M
x-ray
1
0.97853
1.0
BL19U1
SSRF
0.97853
SYNCHROTRON
SSRF BEAMLINE BL19U1
5252.146
HIV-1 gp41 NHR
6
syn
polymer
3931.463
HIV-1 fusion inhibitor MT-WQ-IDL
6
syn
polymer
18.015
water
7
nat
water
no
no
TLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
TLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
A,C,E,G,I,K
polypeptide(L)
no
no
MTWEEWDKKIEEYTKKIEELIKKSQNQQIDL
MTWEEWDKKIEEYTKKIEELIKKSQNQQIDL
B,D,F,H,J,L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.63
53.31
VAPOR DIFFUSION
0.2 M Zinc Acetate, 0.1 M Imidazole: HCl pH 8.0, 20% (v/v) 1,4-Butanediol
289
citation
diffrn_detector
pdbx_struct_oper_list
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Derived calculations
Database references
Data collection
Database references
Refinement description
1
0
2016-11-02
1
1
2017-09-27
1
2
2017-11-22
1
3
2023-11-08
_citation.journal_id_CSD
_diffrn_detector.detector
_pdbx_struct_oper_list.symmetry_operation
_citation.journal_abbrev
_citation.journal_volume
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBJ
Y
PDBJ
2016-10-06
REL
REL
HOH
water
11676
Human immunodeficiency virus 1
sample
1
46
11676
Human immunodeficiency virus 1
sample
1
31
5CMZ
PDB
experimental model
HOH
3
3
HOH
HOH
101
C
HOH
4
3
HOH
HOH
101
D
HOH
1
3
HOH
HOH
102
D
HOH
7
3
HOH
HOH
101
E
HOH
5
3
HOH
HOH
102
E
HOH
2
3
HOH
HOH
101
H
HOH
6
3
HOH
HOH
101
L
n
1
2
A
n
2
3
A
n
3
4
A
n
4
5
A
n
5
6
A
ALA
7
n
6
ALA
7
A
ARG
8
n
7
ARG
8
A
GLN
9
n
8
GLN
9
A
LEU
10
n
9
LEU
10
A
LEU
11
n
10
LEU
11
A
SER
12
n
11
SER
12
A
GLY
13
n
12
GLY
13
A
ILE
14
n
13
ILE
14
A
VAL
15
n
14
VAL
15
A
GLN
16
n
15
GLN
16
A
GLN
17
n
16
GLN
17
A
GLN
18
n
17
GLN
18
A
ASN
19
n
18
ASN
19
A
ASN
20
n
19
ASN
20
A
LEU
21
n
20
LEU
21
A
LEU
22
n
21
LEU
22
A
ARG
23
n
22
ARG
23
A
ALA
24
n
23
ALA
24
A
ILE
25
n
24
ILE
25
A
GLU
26
n
25
GLU
26
A
ALA
27
n
26
ALA
27
A
GLN
28
n
27
GLN
28
A
GLN
29
n
28
GLN
29
A
HIS
30
n
29
HIS
30
A
LEU
31
n
30
LEU
31
A
LEU
32
n
31
LEU
32
A
GLN
33
n
32
GLN
33
A
LEU
34
n
33
LEU
34
A
THR
35
n
34
THR
35
A
VAL
36
n
35
VAL
36
A
TRP
37
n
36
TRP
37
A
GLY
38
n
37
GLY
38
A
ILE
39
n
38
ILE
39
A
LYS
40
n
39
LYS
40
A
GLN
41
n
40
GLN
41
A
LEU
42
n
41
LEU
42
A
GLN
43
n
42
GLN
43
A
ALA
44
n
43
ALA
44
A
ARG
45
n
44
ARG
45
A
ILE
46
n
45
ILE
46
A
n
46
47
A
MET
52
n
1
MET
52
B
THR
53
n
2
THR
53
B
TRP
54
n
3
TRP
54
B
GLU
55
n
4
GLU
55
B
GLU
56
n
5
GLU
56
B
TRP
57
n
6
TRP
57
B
ASP
58
n
7
ASP
58
B
LYS
59
n
8
LYS
59
B
LYS
60
n
9
LYS
60
B
ILE
61
n
10
ILE
61
B
GLU
62
n
11
GLU
62
B
GLU
63
n
12
GLU
63
B
TYR
64
n
13
TYR
64
B
THR
65
n
14
THR
65
B
LYS
66
n
15
LYS
66
B
LYS
67
n
16
LYS
67
B
ILE
68
n
17
ILE
68
B
GLU
69
n
18
GLU
69
B
GLU
70
n
19
GLU
70
B
LEU
71
n
20
LEU
71
B
ILE
72
n
21
ILE
72
B
LYS
73
n
22
LYS
73
B
LYS
74
n
23
LYS
74
B
SER
75
n
24
SER
75
B
GLN
76
n
25
GLN
76
B
ASN
77
n
26
ASN
77
B
GLN
78
n
27
GLN
78
B
GLN
79
n
28
GLN
79
B
ILE
80
n
29
ILE
80
B
ASP
81
n
30
ASP
81
B
LEU
82
n
31
LEU
82
B
n
1
2
C
n
2
3
C
n
3
4
C
VAL
5
n
4
VAL
5
C
GLN
6
n
5
GLN
6
C
ALA
7
n
6
ALA
7
C
ARG
8
n
7
ARG
8
C
GLN
9
n
8
GLN
9
C
LEU
10
n
9
LEU
10
C
LEU
11
n
10
LEU
11
C
SER
12
n
11
SER
12
C
GLY
13
n
12
GLY
13
C
ILE
14
n
13
ILE
14
C
VAL
15
n
14
VAL
15
C
GLN
16
n
15
GLN
16
C
GLN
17
n
16
GLN
17
C
GLN
18
n
17
GLN
18
C
ASN
19
n
18
ASN
19
C
ASN
20
n
19
ASN
20
C
LEU
21
n
20
LEU
21
C
LEU
22
n
21
LEU
22
C
ARG
23
n
22
ARG
23
C
ALA
24
n
23
ALA
24
C
ILE
25
n
24
ILE
25
C
GLU
26
n
25
GLU
26
C
ALA
27
n
26
ALA
27
C
GLN
28
n
27
GLN
28
C
GLN
29
n
28
GLN
29
C
HIS
30
n
29
HIS
30
C
LEU
31
n
30
LEU
31
C
LEU
32
n
31
LEU
32
C
GLN
33
n
32
GLN
33
C
LEU
34
n
33
LEU
34
C
THR
35
n
34
THR
35
C
VAL
36
n
35
VAL
36
C
TRP
37
n
36
TRP
37
C
GLY
38
n
37
GLY
38
C
ILE
39
n
38
ILE
39
C
LYS
40
n
39
LYS
40
C
GLN
41
n
40
GLN
41
C
LEU
42
n
41
LEU
42
C
GLN
43
n
42
GLN
43
C
ALA
44
n
43
ALA
44
C
ARG
45
n
44
ARG
45
C
ILE
46
n
45
ILE
46
C
n
46
47
C
MET
52
n
1
MET
52
D
THR
53
n
2
THR
53
D
TRP
54
n
3
TRP
54
D
GLU
55
n
4
GLU
55
D
GLU
56
n
5
GLU
56
D
TRP
57
n
6
TRP
57
D
ASP
58
n
7
ASP
58
D
LYS
59
n
8
LYS
59
D
LYS
60
n
9
LYS
60
D
ILE
61
n
10
ILE
61
D
GLU
62
n
11
GLU
62
D
GLU
63
n
12
GLU
63
D
TYR
64
n
13
TYR
64
D
THR
65
n
14
THR
65
D
LYS
66
n
15
LYS
66
D
LYS
67
n
16
LYS
67
D
ILE
68
n
17
ILE
68
D
GLU
69
n
18
GLU
69
D
GLU
70
n
19
GLU
70
D
LEU
71
n
20
LEU
71
D
ILE
72
n
21
ILE
72
D
LYS
73
n
22
LYS
73
D
LYS
74
n
23
LYS
74
D
SER
75
n
24
SER
75
D
GLN
76
n
25
GLN
76
D
ASN
77
n
26
ASN
77
D
GLN
78
n
27
GLN
78
D
GLN
79
n
28
GLN
79
D
ILE
80
n
29
ILE
80
D
ASP
81
n
30
ASP
81
D
n
31
82
D
n
1
2
E
n
2
3
E
THR
4
n
3
THR
4
E
VAL
5
n
4
VAL
5
E
GLN
6
n
5
GLN
6
E
ALA
7
n
6
ALA
7
E
ARG
8
n
7
ARG
8
E
GLN
9
n
8
GLN
9
E
LEU
10
n
9
LEU
10
E
LEU
11
n
10
LEU
11
E
SER
12
n
11
SER
12
E
GLY
13
n
12
GLY
13
E
ILE
14
n
13
ILE
14
E
VAL
15
n
14
VAL
15
E
GLN
16
n
15
GLN
16
E
GLN
17
n
16
GLN
17
E
GLN
18
n
17
GLN
18
E
ASN
19
n
18
ASN
19
E
ASN
20
n
19
ASN
20
E
LEU
21
n
20
LEU
21
E
LEU
22
n
21
LEU
22
E
ARG
23
n
22
ARG
23
E
ALA
24
n
23
ALA
24
E
ILE
25
n
24
ILE
25
E
GLU
26
n
25
GLU
26
E
ALA
27
n
26
ALA
27
E
GLN
28
n
27
GLN
28
E
GLN
29
n
28
GLN
29
E
HIS
30
n
29
HIS
30
E
LEU
31
n
30
LEU
31
E
LEU
32
n
31
LEU
32
E
GLN
33
n
32
GLN
33
E
LEU
34
n
33
LEU
34
E
THR
35
n
34
THR
35
E
VAL
36
n
35
VAL
36
E
TRP
37
n
36
TRP
37
E
GLY
38
n
37
GLY
38
E
ILE
39
n
38
ILE
39
E
LYS
40
n
39
LYS
40
E
GLN
41
n
40
GLN
41
E
LEU
42
n
41
LEU
42
E
GLN
43
n
42
GLN
43
E
ALA
44
n
43
ALA
44
E
ARG
45
n
44
ARG
45
E
ILE
46
n
45
ILE
46
E
n
46
47
E
MET
52
n
1
MET
52
F
THR
53
n
2
THR
53
F
TRP
54
n
3
TRP
54
F
GLU
55
n
4
GLU
55
F
GLU
56
n
5
GLU
56
F
TRP
57
n
6
TRP
57
F
ASP
58
n
7
ASP
58
F
LYS
59
n
8
LYS
59
F
LYS
60
n
9
LYS
60
F
ILE
61
n
10
ILE
61
F
GLU
62
n
11
GLU
62
F
GLU
63
n
12
GLU
63
F
TYR
64
n
13
TYR
64
F
THR
65
n
14
THR
65
F
LYS
66
n
15
LYS
66
F
LYS
67
n
16
LYS
67
F
ILE
68
n
17
ILE
68
F
GLU
69
n
18
GLU
69
F
GLU
70
n
19
GLU
70
F
LEU
71
n
20
LEU
71
F
ILE
72
n
21
ILE
72
F
LYS
73
n
22
LYS
73
F
LYS
74
n
23
LYS
74
F
SER
75
n
24
SER
75
F
GLN
76
n
25
GLN
76
F
ASN
77
n
26
ASN
77
F
GLN
78
n
27
GLN
78
F
GLN
79
n
28
GLN
79
F
ILE
80
n
29
ILE
80
F
ASP
81
n
30
ASP
81
F
n
31
82
F
n
1
2
G
LEU
3
n
2
LEU
3
G
THR
4
n
3
THR
4
G
VAL
5
n
4
VAL
5
G
GLN
6
n
5
GLN
6
G
ALA
7
n
6
ALA
7
G
ARG
8
n
7
ARG
8
G
GLN
9
n
8
GLN
9
G
LEU
10
n
9
LEU
10
G
LEU
11
n
10
LEU
11
G
SER
12
n
11
SER
12
G
GLY
13
n
12
GLY
13
G
ILE
14
n
13
ILE
14
G
VAL
15
n
14
VAL
15
G
GLN
16
n
15
GLN
16
G
GLN
17
n
16
GLN
17
G
GLN
18
n
17
GLN
18
G
ASN
19
n
18
ASN
19
G
ASN
20
n
19
ASN
20
G
LEU
21
n
20
LEU
21
G
LEU
22
n
21
LEU
22
G
ARG
23
n
22
ARG
23
G
ALA
24
n
23
ALA
24
G
ILE
25
n
24
ILE
25
G
GLU
26
n
25
GLU
26
G
ALA
27
n
26
ALA
27
G
GLN
28
n
27
GLN
28
G
GLN
29
n
28
GLN
29
G
HIS
30
n
29
HIS
30
G
LEU
31
n
30
LEU
31
G
LEU
32
n
31
LEU
32
G
GLN
33
n
32
GLN
33
G
LEU
34
n
33
LEU
34
G
THR
35
n
34
THR
35
G
VAL
36
n
35
VAL
36
G
TRP
37
n
36
TRP
37
G
GLY
38
n
37
GLY
38
G
ILE
39
n
38
ILE
39
G
LYS
40
n
39
LYS
40
G
GLN
41
n
40
GLN
41
G
LEU
42
n
41
LEU
42
G
GLN
43
n
42
GLN
43
G
ALA
44
n
43
ALA
44
G
ARG
45
n
44
ARG
45
G
ILE
46
n
45
ILE
46
G
n
46
47
G
MET
52
n
1
MET
52
H
THR
53
n
2
THR
53
H
TRP
54
n
3
TRP
54
H
GLU
55
n
4
GLU
55
H
GLU
56
n
5
GLU
56
H
TRP
57
n
6
TRP
57
H
ASP
58
n
7
ASP
58
H
LYS
59
n
8
LYS
59
H
LYS
60
n
9
LYS
60
H
ILE
61
n
10
ILE
61
H
GLU
62
n
11
GLU
62
H
GLU
63
n
12
GLU
63
H
TYR
64
n
13
TYR
64
H
THR
65
n
14
THR
65
H
LYS
66
n
15
LYS
66
H
LYS
67
n
16
LYS
67
H
ILE
68
n
17
ILE
68
H
GLU
69
n
18
GLU
69
H
GLU
70
n
19
GLU
70
H
LEU
71
n
20
LEU
71
H
ILE
72
n
21
ILE
72
H
LYS
73
n
22
LYS
73
H
LYS
74
n
23
LYS
74
H
SER
75
n
24
SER
75
H
GLN
76
n
25
GLN
76
H
ASN
77
n
26
ASN
77
H
GLN
78
n
27
GLN
78
H
GLN
79
n
28
GLN
79
H
ILE
80
n
29
ILE
80
H
ASP
81
n
30
ASP
81
H
n
31
82
H
n
1
2
I
LEU
3
n
2
LEU
3
I
THR
4
n
3
THR
4
I
VAL
5
n
4
VAL
5
I
GLN
6
n
5
GLN
6
I
ALA
7
n
6
ALA
7
I
ARG
8
n
7
ARG
8
I
GLN
9
n
8
GLN
9
I
LEU
10
n
9
LEU
10
I
LEU
11
n
10
LEU
11
I
SER
12
n
11
SER
12
I
GLY
13
n
12
GLY
13
I
ILE
14
n
13
ILE
14
I
VAL
15
n
14
VAL
15
I
GLN
16
n
15
GLN
16
I
GLN
17
n
16
GLN
17
I
GLN
18
n
17
GLN
18
I
ASN
19
n
18
ASN
19
I
ASN
20
n
19
ASN
20
I
LEU
21
n
20
LEU
21
I
LEU
22
n
21
LEU
22
I
ARG
23
n
22
ARG
23
I
ALA
24
n
23
ALA
24
I
ILE
25
n
24
ILE
25
I
GLU
26
n
25
GLU
26
I
ALA
27
n
26
ALA
27
I
GLN
28
n
27
GLN
28
I
GLN
29
n
28
GLN
29
I
HIS
30
n
29
HIS
30
I
LEU
31
n
30
LEU
31
I
LEU
32
n
31
LEU
32
I
GLN
33
n
32
GLN
33
I
LEU
34
n
33
LEU
34
I
THR
35
n
34
THR
35
I
VAL
36
n
35
VAL
36
I
TRP
37
n
36
TRP
37
I
GLY
38
n
37
GLY
38
I
ILE
39
n
38
ILE
39
I
LYS
40
n
39
LYS
40
I
GLN
41
n
40
GLN
41
I
LEU
42
n
41
LEU
42
I
GLN
43
n
42
GLN
43
I
ALA
44
n
43
ALA
44
I
ARG
45
n
44
ARG
45
I
ILE
46
n
45
ILE
46
I
n
46
47
I
MET
52
n
1
MET
52
J
THR
53
n
2
THR
53
J
TRP
54
n
3
TRP
54
J
GLU
55
n
4
GLU
55
J
GLU
56
n
5
GLU
56
J
TRP
57
n
6
TRP
57
J
ASP
58
n
7
ASP
58
J
LYS
59
n
8
LYS
59
J
LYS
60
n
9
LYS
60
J
ILE
61
n
10
ILE
61
J
GLU
62
n
11
GLU
62
J
GLU
63
n
12
GLU
63
J
TYR
64
n
13
TYR
64
J
THR
65
n
14
THR
65
J
LYS
66
n
15
LYS
66
J
LYS
67
n
16
LYS
67
J
ILE
68
n
17
ILE
68
J
GLU
69
n
18
GLU
69
J
GLU
70
n
19
GLU
70
J
LEU
71
n
20
LEU
71
J
ILE
72
n
21
ILE
72
J
LYS
73
n
22
LYS
73
J
LYS
74
n
23
LYS
74
J
SER
75
n
24
SER
75
J
GLN
76
n
25
GLN
76
J
ASN
77
n
26
ASN
77
J
GLN
78
n
27
GLN
78
J
GLN
79
n
28
GLN
79
J
ILE
80
n
29
ILE
80
J
ASP
81
n
30
ASP
81
J
LEU
82
n
31
LEU
82
J
n
1
2
K
n
2
3
K
THR
4
n
3
THR
4
K
VAL
5
n
4
VAL
5
K
GLN
6
n
5
GLN
6
K
ALA
7
n
6
ALA
7
K
ARG
8
n
7
ARG
8
K
GLN
9
n
8
GLN
9
K
LEU
10
n
9
LEU
10
K
LEU
11
n
10
LEU
11
K
SER
12
n
11
SER
12
K
GLY
13
n
12
GLY
13
K
ILE
14
n
13
ILE
14
K
VAL
15
n
14
VAL
15
K
GLN
16
n
15
GLN
16
K
GLN
17
n
16
GLN
17
K
GLN
18
n
17
GLN
18
K
ASN
19
n
18
ASN
19
K
ASN
20
n
19
ASN
20
K
LEU
21
n
20
LEU
21
K
LEU
22
n
21
LEU
22
K
ARG
23
n
22
ARG
23
K
ALA
24
n
23
ALA
24
K
ILE
25
n
24
ILE
25
K
GLU
26
n
25
GLU
26
K
ALA
27
n
26
ALA
27
K
GLN
28
n
27
GLN
28
K
GLN
29
n
28
GLN
29
K
HIS
30
n
29
HIS
30
K
LEU
31
n
30
LEU
31
K
LEU
32
n
31
LEU
32
K
GLN
33
n
32
GLN
33
K
LEU
34
n
33
LEU
34
K
THR
35
n
34
THR
35
K
VAL
36
n
35
VAL
36
K
TRP
37
n
36
TRP
37
K
GLY
38
n
37
GLY
38
K
ILE
39
n
38
ILE
39
K
LYS
40
n
39
LYS
40
K
GLN
41
n
40
GLN
41
K
LEU
42
n
41
LEU
42
K
GLN
43
n
42
GLN
43
K
ALA
44
n
43
ALA
44
K
ARG
45
n
44
ARG
45
K
ILE
46
n
45
ILE
46
K
n
46
47
K
MET
52
n
1
MET
52
L
THR
53
n
2
THR
53
L
TRP
54
n
3
TRP
54
L
GLU
55
n
4
GLU
55
L
GLU
56
n
5
GLU
56
L
TRP
57
n
6
TRP
57
L
ASP
58
n
7
ASP
58
L
LYS
59
n
8
LYS
59
L
LYS
60
n
9
LYS
60
L
ILE
61
n
10
ILE
61
L
GLU
62
n
11
GLU
62
L
GLU
63
n
12
GLU
63
L
TYR
64
n
13
TYR
64
L
THR
65
n
14
THR
65
L
LYS
66
n
15
LYS
66
L
LYS
67
n
16
LYS
67
L
ILE
68
n
17
ILE
68
L
GLU
69
n
18
GLU
69
L
GLU
70
n
19
GLU
70
L
LEU
71
n
20
LEU
71
L
ILE
72
n
21
ILE
72
L
LYS
73
n
22
LYS
73
L
LYS
74
n
23
LYS
74
L
SER
75
n
24
SER
75
L
GLN
76
n
25
GLN
76
L
ASN
77
n
26
ASN
77
L
GLN
78
n
27
GLN
78
L
GLN
79
n
28
GLN
79
L
ILE
80
n
29
ILE
80
L
ASP
81
n
30
ASP
81
L
n
31
82
L
author_and_software_defined_assembly
PISA
6
hexameric
author_and_software_defined_assembly
PISA
6
hexameric
11560
-100
11480
11480
-95
11950
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
THR
2
A
THR
1
1
Y
1
A
LEU
3
A
LEU
2
1
Y
1
A
THR
4
A
THR
3
1
Y
1
A
VAL
5
A
VAL
4
1
Y
1
A
GLN
6
A
GLN
5
1
Y
1
A
LEU
47
A
LEU
46
1
Y
1
C
THR
2
C
THR
1
1
Y
1
C
LEU
3
C
LEU
2
1
Y
1
C
THR
4
C
THR
3
1
Y
1
C
LEU
47
C
LEU
46
1
Y
1
D
LEU
82
D
LEU
31
1
Y
1
E
THR
2
E
THR
1
1
Y
1
E
LEU
3
E
LEU
2
1
Y
1
E
LEU
47
E
LEU
46
1
Y
1
F
LEU
82
F
LEU
31
1
Y
1
G
THR
2
G
THR
1
1
Y
1
G
LEU
47
G
LEU
46
1
Y
1
H
LEU
82
H
LEU
31
1
Y
1
I
THR
2
I
THR
1
1
Y
1
I
LEU
47
I
LEU
46
1
Y
1
K
THR
2
K
THR
1
1
Y
1
K
LEU
3
K
LEU
2
1
Y
1
K
LEU
47
K
LEU
46
1
Y
1
L
LEU
82
L
LEU
31
1
Y
1
D
D
N
O
MET
HOH
52
101
2.04
1
J
D
CD2
O
LEU
HOH
82
101
2.17
1_555
2_455
1
B
ASP
81
-79.68
42.63
1
C
ARG
8
-53.67
-72.42
1
D
ILE
80
-69.64
70.27
1
F
ILE
80
-58.59
-7.52
1
G
VAL
5
-151.28
79.66
1
K
GLN
6
-94.13
56.01
1
L
ILE
80
-72.61
22.08
0.2759
0.2371
0.2392
2.800
39.6
634
12009
5.28
84.58
0.41
1
FREE R-VALUE
1.38
MOLECULAR REPLACEMENT
30.34
0.90
1.11
5CMZ
2.800
39.6
7
3687
0
0
3680
0.004
3716
0.465
4988
21.457
1448
0.035
571
0.002
623
0.3283
0.2673
3.0162
129
2315
87.00
0.3099
0.2588
3.3196
113
2284
85.00
0.2852
0.2422
3.7996
137
2310
87.00
0.2209
0.2028
4.7858
127
2246
84.00
0.3018
0.2514
39.6219
128
2220
81.00
2.8
39.6
5H0N
12009
0.079
1
9.3
2.5
84.6
2.80
2.85
1
refinement
PHENIX
(1.10.1_2155: ???)
data reduction
HKL-3000
data scaling
HKL-3000
phasing
PHENIX
N
Crystal structure of HIV-1 fusion inhibitor MT-WQ-IDL bound to gp41 NHR
1
N
N
2
N
N
1
N
N
2
N
N
1
N
N
2
N
N
1
N
N
2
N
N
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
A
GLN
9
A
GLN
8
HELX_P
A
ALA
44
A
ALA
43
1
AA1
36
B
THR
53
B
THR
2
HELX_P
B
GLN
78
B
GLN
27
1
AA2
26
C
ALA
7
C
ALA
6
HELX_P
C
ARG
45
C
ARG
44
1
AA3
39
D
THR
53
D
THR
2
HELX_P
D
ILE
80
D
ILE
29
1
AA4
28
E
VAL
5
E
VAL
4
HELX_P
E
ALA
44
E
ALA
43
1
AA5
40
F
THR
53
F
THR
2
HELX_P
F
ILE
80
F
ILE
29
1
AA6
28
G
GLN
6
G
GLN
5
HELX_P
G
GLN
43
G
GLN
42
1
AA7
38
H
THR
53
H
THR
2
HELX_P
H
ILE
80
H
ILE
29
1
AA8
28
I
THR
4
I
THR
3
HELX_P
I
ILE
46
I
ILE
45
1
AA9
43
J
THR
53
J
THR
2
HELX_P
J
GLN
78
J
GLN
27
1
AB1
26
K
ALA
7
K
ALA
6
HELX_P
K
ALA
44
K
ALA
43
1
AB2
38
L
THR
53
L
THR
2
HELX_P
L
ILE
80
L
ILE
29
1
AB3
28
VIRAL PROTEIN/VIRAL PROTEIN INHIBITOR
MT-WQ-IDL, HIV-1, fusion inhibitor, VIRAL PROTEIN-VIRAL PROTEIN INHIBITOR complex
5H0N
PDB
1
1
5H0N
5H0N
PDB
2
1
5H0N
2
47
5H0N
2
47
5H0N
A
1
1
46
52
82
5H0N
52
82
5H0N
B
2
1
31
2
47
5H0N
2
47
5H0N
C
1
1
46
52
82
5H0N
52
82
5H0N
D
2
1
31
2
47
5H0N
2
47
5H0N
E
1
1
46
52
82
5H0N
52
82
5H0N
F
2
1
31
2
47
5H0N
2
47
5H0N
G
1
1
46
52
82
5H0N
52
82
5H0N
H
2
1
31
2
47
5H0N
2
47
5H0N
I
1
1
46
52
82
5H0N
52
82
5H0N
J
2
1
31
2
47
5H0N
2
47
5H0N
K
1
1
46
52
82
5H0N
52
82
5H0N
L
2
1
31
4
P 1 21 1