0.026585
0.000000
0.000000
0.000000
0.022815
0.000000
0.000000
0.000000
0.012746
0.000000
0.000000
0.000000
Dong, J.
Weber, F.E.
Caflisch, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
37.615
43.830
78.459
C4 H9 N O
87.120
~{N},~{N}-dimethylethanamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
N
N
3
N
C
N
4
N
C
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
N
N
17
S
C
N
18
N
C
N
19
N
O
N
20
N
C
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
N
N
30
S
C
N
31
N
C
N
32
N
O
N
33
N
C
N
34
N
C
N
35
N
C
N
36
N
N
N
37
N
C
N
38
N
N
N
39
N
N
N
40
N
O
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
O
N
63
N
N
N
64
N
O
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
N
N
74
S
C
N
75
N
C
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
O
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
R
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
S
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
N
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
Y
167
N
C
Y
168
N
N
Y
169
N
C
Y
170
N
C
Y
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
S
C
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
N
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
S
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
O
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
R
C
N
334
N
O
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
N
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
C
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
doub
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
doub
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
sing
Y
164
N
doub
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
Y
273
N
sing
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
UK
Sci Rep
2045-2322
7
42108
42108
10.1038/srep42108
28176838
N,N Dimethylacetamide a drug excipient that acts as bromodomain ligand for osteoporosis treatment.
2017
10.2210/pdb5hcl/pdb
pdb_00005hcl
100
1
PIXEL
2015-10-16
DECTRIS EIGER X 16M
SINGLE WAVELENGTH
M
x-ray
1
1.000043
1.0
X06SA
SLS
1.000043
SYNCHROTRON
SLS BEAMLINE X06SA
15099.380
Bromodomain-containing protein 4
N-TERMINAL BROMODOMAIN, RESIDUES 44-168
1
man
polymer
87.120
~{N},~{N}-dimethylethanamide
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
260
nat
water
Protein HUNK1
no
no
SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN
AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE
SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN
AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
127
BRD4, HUNK1
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
plasmid
Biological sequence
pNIC28-Bsa4
1
2.14
42.57
VAPOR DIFFUSION, HANGING DROP
7.5
0.20M Sodium Nitrate, 20% PEG 3350, 10% ethylene glycol
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Database references
Data collection
Database references
Refinement description
1
0
2017-01-25
1
1
2017-02-15
1
2
2017-02-22
1
3
2024-01-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
RCSB
Y
PDBE
2016-01-04
REL
REL
1
A
O
HOH
560
6.16
5Y9
~{N},~{N}-dimethylethanamide
EDO
1,2-ETHANEDIOL
HOH
water
4PCI
PDB
experimental model
LIG
1
2
5Y9
5Y9
201
A
EDO
1
3
EDO
EDO
202
A
HOH
249
4
HOH
HOH
301
A
HOH
215
4
HOH
HOH
302
A
HOH
253
4
HOH
HOH
303
A
HOH
78
4
HOH
HOH
304
A
HOH
242
4
HOH
HOH
305
A
HOH
201
4
HOH
HOH
306
A
HOH
180
4
HOH
HOH
307
A
HOH
128
4
HOH
HOH
308
A
HOH
58
4
HOH
HOH
309
A
HOH
121
4
HOH
HOH
310
A
HOH
149
4
HOH
HOH
311
A
HOH
110
4
HOH
HOH
312
A
HOH
2
4
HOH
HOH
313
A
HOH
175
4
HOH
HOH
314
A
HOH
51
4
HOH
HOH
315
A
HOH
194
4
HOH
HOH
316
A
HOH
86
4
HOH
HOH
317
A
HOH
28
4
HOH
HOH
318
A
HOH
109
4
HOH
HOH
319
A
HOH
41
4
HOH
HOH
320
A
HOH
155
4
HOH
HOH
321
A
HOH
181
4
HOH
HOH
322
A
HOH
116
4
HOH
HOH
323
A
HOH
177
4
HOH
HOH
324
A
HOH
107
4
HOH
HOH
325
A
HOH
93
4
HOH
HOH
326
A
HOH
64
4
HOH
HOH
327
A
HOH
87
4
HOH
HOH
328
A
HOH
70
4
HOH
HOH
329
A
HOH
163
4
HOH
HOH
330
A
HOH
159
4
HOH
HOH
331
A
HOH
127
4
HOH
HOH
332
A
HOH
12
4
HOH
HOH
333
A
HOH
120
4
HOH
HOH
334
A
HOH
152
4
HOH
HOH
335
A
HOH
1
4
HOH
HOH
336
A
HOH
68
4
HOH
HOH
337
A
HOH
8
4
HOH
HOH
338
A
HOH
26
4
HOH
HOH
339
A
HOH
188
4
HOH
HOH
340
A
HOH
45
4
HOH
HOH
341
A
HOH
112
4
HOH
HOH
342
A
HOH
60
4
HOH
HOH
343
A
HOH
4
4
HOH
HOH
344
A
HOH
21
4
HOH
HOH
345
A
HOH
143
4
HOH
HOH
346
A
HOH
30
4
HOH
HOH
347
A
HOH
71
4
HOH
HOH
348
A
HOH
85
4
HOH
HOH
349
A
HOH
5
4
HOH
HOH
350
A
HOH
176
4
HOH
HOH
351
A
HOH
32
4
HOH
HOH
352
A
HOH
153
4
HOH
HOH
353
A
HOH
139
4
HOH
HOH
354
A
HOH
16
4
HOH
HOH
355
A
HOH
100
4
HOH
HOH
356
A
HOH
11
4
HOH
HOH
357
A
HOH
213
4
HOH
HOH
358
A
HOH
61
4
HOH
HOH
359
A
HOH
113
4
HOH
HOH
360
A
HOH
98
4
HOH
HOH
361
A
HOH
230
4
HOH
HOH
362
A
HOH
53
4
HOH
HOH
363
A
HOH
10
4
HOH
HOH
364
A
HOH
50
4
HOH
HOH
365
A
HOH
3
4
HOH
HOH
366
A
HOH
9
4
HOH
HOH
367
A
HOH
24
4
HOH
HOH
368
A
HOH
20
4
HOH
HOH
369
A
HOH
237
4
HOH
HOH
370
A
HOH
111
4
HOH
HOH
371
A
HOH
7
4
HOH
HOH
372
A
HOH
223
4
HOH
HOH
373
A
HOH
166
4
HOH
HOH
374
A
HOH
57
4
HOH
HOH
375
A
HOH
34
4
HOH
HOH
376
A
HOH
47
4
HOH
HOH
377
A
HOH
39
4
HOH
HOH
378
A
HOH
40
4
HOH
HOH
379
A
HOH
22
4
HOH
HOH
380
A
HOH
105
4
HOH
HOH
381
A
HOH
48
4
HOH
HOH
382
A
HOH
17
4
HOH
HOH
383
A
HOH
67
4
HOH
HOH
384
A
HOH
132
4
HOH
HOH
385
A
HOH
66
4
HOH
HOH
386
A
HOH
146
4
HOH
HOH
387
A
HOH
156
4
HOH
HOH
388
A
HOH
81
4
HOH
HOH
389
A
HOH
37
4
HOH
HOH
390
A
HOH
95
4
HOH
HOH
391
A
HOH
222
4
HOH
HOH
392
A
HOH
35
4
HOH
HOH
393
A
HOH
182
4
HOH
HOH
394
A
HOH
203
4
HOH
HOH
395
A
HOH
94
4
HOH
HOH
396
A
HOH
141
4
HOH
HOH
397
A
HOH
250
4
HOH
HOH
398
A
HOH
142
4
HOH
HOH
399
A
HOH
114
4
HOH
HOH
400
A
HOH
104
4
HOH
HOH
401
A
HOH
88
4
HOH
HOH
402
A
HOH
72
4
HOH
HOH
403
A
HOH
52
4
HOH
HOH
404
A
HOH
208
4
HOH
HOH
405
A
HOH
260
4
HOH
HOH
406
A
HOH
54
4
HOH
HOH
407
A
HOH
46
4
HOH
HOH
408
A
HOH
79
4
HOH
HOH
409
A
HOH
186
4
HOH
HOH
410
A
HOH
191
4
HOH
HOH
411
A
HOH
25
4
HOH
HOH
412
A
HOH
157
4
HOH
HOH
413
A
HOH
65
4
HOH
HOH
414
A
HOH
145
4
HOH
HOH
415
A
HOH
221
4
HOH
HOH
416
A
HOH
92
4
HOH
HOH
417
A
HOH
97
4
HOH
HOH
418
A
HOH
23
4
HOH
HOH
419
A
HOH
119
4
HOH
HOH
420
A
HOH
19
4
HOH
HOH
421
A
HOH
33
4
HOH
HOH
422
A
HOH
14
4
HOH
HOH
423
A
HOH
18
4
HOH
HOH
424
A
HOH
216
4
HOH
HOH
425
A
HOH
148
4
HOH
HOH
426
A
HOH
36
4
HOH
HOH
427
A
HOH
183
4
HOH
HOH
428
A
HOH
27
4
HOH
HOH
429
A
HOH
59
4
HOH
HOH
430
A
HOH
251
4
HOH
HOH
431
A
HOH
84
4
HOH
HOH
432
A
HOH
55
4
HOH
HOH
433
A
HOH
236
4
HOH
HOH
434
A
HOH
138
4
HOH
HOH
435
A
HOH
13
4
HOH
HOH
436
A
HOH
69
4
HOH
HOH
437
A
HOH
147
4
HOH
HOH
438
A
HOH
63
4
HOH
HOH
439
A
HOH
73
4
HOH
HOH
440
A
HOH
169
4
HOH
HOH
441
A
HOH
161
4
HOH
HOH
442
A
HOH
101
4
HOH
HOH
443
A
HOH
160
4
HOH
HOH
444
A
HOH
137
4
HOH
HOH
445
A
HOH
238
4
HOH
HOH
446
A
HOH
207
4
HOH
HOH
447
A
HOH
234
4
HOH
HOH
448
A
HOH
247
4
HOH
HOH
449
A
HOH
256
4
HOH
HOH
450
A
HOH
6
4
HOH
HOH
451
A
HOH
227
4
HOH
HOH
452
A
HOH
42
4
HOH
HOH
453
A
HOH
226
4
HOH
HOH
454
A
HOH
31
4
HOH
HOH
455
A
HOH
129
4
HOH
HOH
456
A
HOH
130
4
HOH
HOH
457
A
HOH
38
4
HOH
HOH
458
A
HOH
15
4
HOH
HOH
459
A
HOH
56
4
HOH
HOH
460
A
HOH
187
4
HOH
HOH
461
A
HOH
49
4
HOH
HOH
462
A
HOH
158
4
HOH
HOH
463
A
HOH
248
4
HOH
HOH
464
A
HOH
82
4
HOH
HOH
465
A
HOH
44
4
HOH
HOH
466
A
HOH
231
4
HOH
HOH
467
A
HOH
144
4
HOH
HOH
468
A
HOH
74
4
HOH
HOH
469
A
HOH
204
4
HOH
HOH
470
A
HOH
241
4
HOH
HOH
471
A
HOH
173
4
HOH
HOH
472
A
HOH
124
4
HOH
HOH
473
A
HOH
196
4
HOH
HOH
474
A
HOH
252
4
HOH
HOH
475
A
HOH
240
4
HOH
HOH
476
A
HOH
189
4
HOH
HOH
477
A
HOH
259
4
HOH
HOH
478
A
HOH
211
4
HOH
HOH
479
A
HOH
257
4
HOH
HOH
480
A
HOH
229
4
HOH
HOH
481
A
HOH
206
4
HOH
HOH
482
A
HOH
254
4
HOH
HOH
483
A
HOH
172
4
HOH
HOH
484
A
HOH
165
4
HOH
HOH
485
A
HOH
89
4
HOH
HOH
486
A
HOH
125
4
HOH
HOH
487
A
HOH
77
4
HOH
HOH
488
A
HOH
195
4
HOH
HOH
489
A
HOH
135
4
HOH
HOH
490
A
HOH
170
4
HOH
HOH
491
A
HOH
224
4
HOH
HOH
492
A
HOH
174
4
HOH
HOH
493
A
HOH
106
4
HOH
HOH
494
A
HOH
83
4
HOH
HOH
495
A
HOH
192
4
HOH
HOH
496
A
HOH
131
4
HOH
HOH
497
A
HOH
76
4
HOH
HOH
498
A
HOH
217
4
HOH
HOH
499
A
HOH
228
4
HOH
HOH
500
A
HOH
99
4
HOH
HOH
501
A
HOH
197
4
HOH
HOH
502
A
HOH
198
4
HOH
HOH
503
A
HOH
96
4
HOH
HOH
504
A
HOH
218
4
HOH
HOH
505
A
HOH
126
4
HOH
HOH
506
A
HOH
258
4
HOH
HOH
507
A
HOH
43
4
HOH
HOH
508
A
HOH
239
4
HOH
HOH
509
A
HOH
246
4
HOH
HOH
510
A
HOH
209
4
HOH
HOH
511
A
HOH
102
4
HOH
HOH
512
A
HOH
162
4
HOH
HOH
513
A
HOH
171
4
HOH
HOH
514
A
HOH
235
4
HOH
HOH
515
A
HOH
214
4
HOH
HOH
516
A
HOH
115
4
HOH
HOH
517
A
HOH
154
4
HOH
HOH
518
A
HOH
205
4
HOH
HOH
519
A
HOH
123
4
HOH
HOH
520
A
HOH
168
4
HOH
HOH
521
A
HOH
117
4
HOH
HOH
522
A
HOH
184
4
HOH
HOH
523
A
HOH
164
4
HOH
HOH
524
A
HOH
245
4
HOH
HOH
525
A
HOH
151
4
HOH
HOH
526
A
HOH
136
4
HOH
HOH
527
A
HOH
255
4
HOH
HOH
528
A
HOH
200
4
HOH
HOH
529
A
HOH
244
4
HOH
HOH
530
A
HOH
134
4
HOH
HOH
531
A
HOH
29
4
HOH
HOH
532
A
HOH
225
4
HOH
HOH
533
A
HOH
219
4
HOH
HOH
534
A
HOH
108
4
HOH
HOH
535
A
HOH
190
4
HOH
HOH
536
A
HOH
140
4
HOH
HOH
537
A
HOH
185
4
HOH
HOH
538
A
HOH
220
4
HOH
HOH
539
A
HOH
233
4
HOH
HOH
540
A
HOH
122
4
HOH
HOH
541
A
HOH
75
4
HOH
HOH
542
A
HOH
80
4
HOH
HOH
543
A
HOH
178
4
HOH
HOH
544
A
HOH
202
4
HOH
HOH
545
A
HOH
210
4
HOH
HOH
546
A
HOH
199
4
HOH
HOH
547
A
HOH
62
4
HOH
HOH
548
A
HOH
133
4
HOH
HOH
549
A
HOH
118
4
HOH
HOH
550
A
HOH
90
4
HOH
HOH
551
A
HOH
91
4
HOH
HOH
552
A
HOH
212
4
HOH
HOH
553
A
HOH
243
4
HOH
HOH
554
A
HOH
193
4
HOH
HOH
555
A
HOH
232
4
HOH
HOH
556
A
HOH
103
4
HOH
HOH
557
A
HOH
179
4
HOH
HOH
558
A
HOH
167
4
HOH
HOH
559
A
HOH
150
4
HOH
HOH
560
A
5.230
5.230
39.230
39.230
Phaser MODE: MR_AUTO
SER
42
n
1
SER
42
A
MET
43
n
2
MET
43
A
ASN
44
n
3
ASN
44
A
PRO
45
n
4
PRO
45
A
PRO
46
n
5
PRO
46
A
PRO
47
n
6
PRO
47
A
PRO
48
n
7
PRO
48
A
GLU
49
n
8
GLU
49
A
THR
50
n
9
THR
50
A
SER
51
n
10
SER
51
A
ASN
52
n
11
ASN
52
A
PRO
53
n
12
PRO
53
A
ASN
54
n
13
ASN
54
A
LYS
55
n
14
LYS
55
A
PRO
56
n
15
PRO
56
A
LYS
57
n
16
LYS
57
A
ARG
58
n
17
ARG
58
A
GLN
59
n
18
GLN
59
A
THR
60
n
19
THR
60
A
ASN
61
n
20
ASN
61
A
GLN
62
n
21
GLN
62
A
LEU
63
n
22
LEU
63
A
GLN
64
n
23
GLN
64
A
TYR
65
n
24
TYR
65
A
LEU
66
n
25
LEU
66
A
LEU
67
n
26
LEU
67
A
ARG
68
n
27
ARG
68
A
VAL
69
n
28
VAL
69
A
VAL
70
n
29
VAL
70
A
LEU
71
n
30
LEU
71
A
LYS
72
n
31
LYS
72
A
THR
73
n
32
THR
73
A
LEU
74
n
33
LEU
74
A
TRP
75
n
34
TRP
75
A
LYS
76
n
35
LYS
76
A
HIS
77
n
36
HIS
77
A
GLN
78
n
37
GLN
78
A
PHE
79
n
38
PHE
79
A
ALA
80
n
39
ALA
80
A
TRP
81
n
40
TRP
81
A
PRO
82
n
41
PRO
82
A
PHE
83
n
42
PHE
83
A
GLN
84
n
43
GLN
84
A
GLN
85
n
44
GLN
85
A
PRO
86
n
45
PRO
86
A
VAL
87
n
46
VAL
87
A
ASP
88
n
47
ASP
88
A
ALA
89
n
48
ALA
89
A
VAL
90
n
49
VAL
90
A
LYS
91
n
50
LYS
91
A
LEU
92
n
51
LEU
92
A
ASN
93
n
52
ASN
93
A
LEU
94
n
53
LEU
94
A
PRO
95
n
54
PRO
95
A
ASP
96
n
55
ASP
96
A
TYR
97
n
56
TYR
97
A
TYR
98
n
57
TYR
98
A
LYS
99
n
58
LYS
99
A
ILE
100
n
59
ILE
100
A
ILE
101
n
60
ILE
101
A
LYS
102
n
61
LYS
102
A
THR
103
n
62
THR
103
A
PRO
104
n
63
PRO
104
A
MET
105
n
64
MET
105
A
ASP
106
n
65
ASP
106
A
MET
107
n
66
MET
107
A
GLY
108
n
67
GLY
108
A
THR
109
n
68
THR
109
A
ILE
110
n
69
ILE
110
A
LYS
111
n
70
LYS
111
A
LYS
112
n
71
LYS
112
A
ARG
113
n
72
ARG
113
A
LEU
114
n
73
LEU
114
A
GLU
115
n
74
GLU
115
A
ASN
116
n
75
ASN
116
A
ASN
117
n
76
ASN
117
A
TYR
118
n
77
TYR
118
A
TYR
119
n
78
TYR
119
A
TRP
120
n
79
TRP
120
A
ASN
121
n
80
ASN
121
A
ALA
122
n
81
ALA
122
A
GLN
123
n
82
GLN
123
A
GLU
124
n
83
GLU
124
A
CYS
125
n
84
CYS
125
A
ILE
126
n
85
ILE
126
A
GLN
127
n
86
GLN
127
A
ASP
128
n
87
ASP
128
A
PHE
129
n
88
PHE
129
A
ASN
130
n
89
ASN
130
A
THR
131
n
90
THR
131
A
MET
132
n
91
MET
132
A
PHE
133
n
92
PHE
133
A
THR
134
n
93
THR
134
A
ASN
135
n
94
ASN
135
A
CYS
136
n
95
CYS
136
A
TYR
137
n
96
TYR
137
A
ILE
138
n
97
ILE
138
A
TYR
139
n
98
TYR
139
A
ASN
140
n
99
ASN
140
A
LYS
141
n
100
LYS
141
A
PRO
142
n
101
PRO
142
A
GLY
143
n
102
GLY
143
A
ASP
144
n
103
ASP
144
A
ASP
145
n
104
ASP
145
A
ILE
146
n
105
ILE
146
A
VAL
147
n
106
VAL
147
A
LEU
148
n
107
LEU
148
A
MET
149
n
108
MET
149
A
ALA
150
n
109
ALA
150
A
GLU
151
n
110
GLU
151
A
ALA
152
n
111
ALA
152
A
LEU
153
n
112
LEU
153
A
GLU
154
n
113
GLU
154
A
LYS
155
n
114
LYS
155
A
LEU
156
n
115
LEU
156
A
PHE
157
n
116
PHE
157
A
LEU
158
n
117
LEU
158
A
GLN
159
n
118
GLN
159
A
LYS
160
n
119
LYS
160
A
ILE
161
n
120
ILE
161
A
ASN
162
n
121
ASN
162
A
GLU
163
n
122
GLU
163
A
LEU
164
n
123
LEU
164
A
PRO
165
n
124
PRO
165
A
THR
166
n
125
THR
166
A
GLU
167
n
126
GLU
167
A
GLU
168
n
127
GLU
168
A
author_and_software_defined_assembly
PISA
1
monomeric
90
1
7840
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
O
HOH
HOH
398
475
1.78
1
A
A
OD2
O
ASP
HOH
144
301
1.99
B
1
A
A
OD1
O
ASP
HOH
144
302
2.02
B
1
A
A
O
O
HOH
HOH
373
467
2.09
1
A
ASN
52
-164.15
97.35
49.730
12.5158
4.030
0.1754
0.1452
0.1466
1.5000
39.2290
1051
20151
21202
4.9600
98.8300
0.1000
1
FREE R-VALUE
1.460
MOLECULAR REPLACEMENT
14.6900
0.9000
1.1100
4PCI
ML
FLAT BULK SOLVENT MODEL
1.5000
39.2290
260
1331
11.04
22.75
10
0
1061
127
0.006
1118
0.819
1521
0.071
160
0.006
199
16.168
433
0.1702
0.1336
1.5681
122
2456
2578
8
97.0000
0.1774
0.1299
1.6507
129
2485
2614
8
100.0000
0.1756
0.1400
1.7542
134
2492
2626
8
100.0000
0.1758
0.1457
1.8896
145
2460
2605
8
99.0000
0.1706
0.1461
2.0798
135
2519
2654
8
100.0000
0.2201
0.1448
2.3807
148
2507
2655
8
99.0000
0.1541
0.1589
2.9992
110
2545
2655
8
98.0000
0.1632
0.1436
39.2429
128
2687
2815
8
99.0000
1.500
39.229
5HCL
21250
21250
0.013
0.034
0.031
1
12.944
42.500
137442
6.500
99.200
0.045
1.500
1.580
14.000
18719
3002
0.020
0.045
1
28.200
6.200
0
98.100
0.041
1.580
1.680
15.400
19317
2912
0.017
0.041
1
32.700
6.600
0
99.700
0.038
1.680
1.790
16.400
18069
2738
0.016
0.038
1
36.100
6.600
0
99.700
0.036
1.790
1.940
17.000
16069
2518
0.015
0.036
1
40.300
6.400
0
99.000
0.033
1.940
2.120
18.200
16100
2378
0.014
0.033
1
47.400
6.800
0
99.700
0.032
2.120
2.370
19.200
14109
2143
0.013
0.032
1
50.300
6.600
0
99.500
0.030
2.370
2.740
19.600
11619
1879
0.013
0.030
1
50.900
6.200
0
98.400
0.030
2.740
3.350
18.700
10875
1630
0.013
0.030
1
56.100
6.700
0
99.300
0.028
3.350
4.740
20.200
8117
1290
0.012
0.028
1
57.500
6.300
0
99.600
0.028
4.740
39.229
19.400
4448
760
0.012
0.028
1
53.800
5.900
0
98.200
data scaling
SCALA
3.3.22
phasing
PHASER
2.5.7
refinement
PHENIX
data extraction
PDB_EXTRACT
3.15
data reduction
XDS
model building
Coot
Crystal Structure of the first bromodomain of BRD4 in complex with DMA
1
N
N
2
N
N
3
N
N
4
N
N
A
THR
60
A
THR
19
HELX_P
A
VAL
69
A
VAL
28
1
AA1
10
A
VAL
69
A
VAL
28
HELX_P
A
LYS
76
A
LYS
35
1
AA2
8
A
ALA
80
A
ALA
39
HELX_P
A
GLN
84
A
GLN
43
5
AA3
5
A
ASP
96
A
ASP
55
HELX_P
A
ILE
101
A
ILE
60
1
AA4
6
A
ASP
106
A
ASP
65
HELX_P
A
ASN
116
A
ASN
75
1
AA5
11
A
ASN
121
A
ASN
80
HELX_P
A
ASN
140
A
ASN
99
1
AA6
20
A
ASP
144
A
ASP
103
HELX_P
A
GLU
163
A
GLU
122
1
AA7
20
Transcription/transcription Inhibitor
Transcription-transcription Inhibitor complex
BRD4_HUMAN
UNP
1
44
O60885
NPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ
ECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE
44
168
5HCL
44
168
O60885
A
1
3
127
1
expression tag
SER
42
5HCL
A
O60885
UNP
1
1
expression tag
MET
43
5HCL
A
O60885
UNP
2
binding site for residue 5Y9 A 201
A
5Y9
201
Software
7
binding site for residue EDO A 202
A
EDO
202
Software
5
A
PRO
82
A
PRO
41
7
1_555
A
PHE
83
A
PHE
42
7
1_555
A
VAL
87
A
VAL
46
7
1_555
A
LEU
94
A
LEU
53
7
1_555
A
ASN
140
A
ASN
99
7
1_555
A
ILE
146
A
ILE
105
7
1_555
A
HOH
313
D
HOH
7
1_555
A
LYS
99
A
LYS
58
5
1_555
A
MET
149
A
MET
108
5
4_555
A
HOH
335
D
HOH
5
4_555
A
HOH
377
D
HOH
5
1_555
A
HOH
386
D
HOH
5
1_555
19
P 21 21 21