0.011162
0.000000
0.000000
0.000000
0.011162
0.000000
0.000000
0.000000
0.011162
0.00000
0.00000
0.00000
White, K.I.
Raman, A.S.
Ranganathan, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
89.592
89.592
89.592
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
O
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
R
C
N
275
N
O
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
N
298
N
O
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
doub
Y
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
Y
285
N
doub
Y
286
N
sing
Y
287
N
sing
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
166
468
480
10.1016/j.cell.2016.05.047
27321669
Origins of Allostery and Evolvability in Proteins: A Case Study.
2016
10.2210/pdb5hfb/pdb
pdb_00005hfb
100
1
IMAGE PLATE
2012-09-20
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.54178
1.0
1.54178
ROTATING ANODE
RIGAKU FR-E SUPERBRIGHT
12670.998
Disks large homolog 4
PDZ-3 domain (UNP residues 302-402)
H372A
1
man
polymer
Synthesized using standard FMOC chemistry, HPCL purified, and lyophilized.
1070.196
Cysteine-rich PDZ-binding protein
PDZ3-binding domain (UNP residues 93-101)
1
syn
polymer
18.015
water
148
nat
water
Postsynaptic density protein 95,PSD-95,Synapse-associated protein 90,SAP90
Cysteine-rich interactor of PDZ three,Cysteine-rich interactor of PDZ3
no
no
GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASAEQAA
IALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRIVTD
GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASAEQAA
IALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRIVTD
A
polypeptide(L)
no
no
TKNYKQTSV
TKNYKQTSV
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rat
sample
1
119
Dlg4, Dlgh4, Psd95
10116
Rattus norvegicus
469008
Escherichia coli
BL21(DE3)
plasmid
Biological sequence
pGEX-4T-1
1
2.17
43.2
VAPOR DIFFUSION, HANGING DROP
7.0
Peptide was included in protein buffer to a final molar ratio of 2:1 relative to protein. Reservoir solution contained 1.2 M sodium citrate, pH 7.0. Equal amounts (1.5 microliters) of protein (8 mg/mL) and reservoir solution were mixed and equillibrated against 500 microliters of crystallization buffer.
289
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_oper_list
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2016-11-16
1
1
2023-09-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_oper_list.symmetry_operation
United States
Robert A. Welch Foundation
I-1366
N
RCSB
Y
RCSB
2016-01-06
REL
REL
HOH
water
10116
Rat
Rattus norvegicus
sample
1
9
1BE9
PDB
experimental model
HOH
141
3
HOH
HOH
501
A
HOH
136
3
HOH
HOH
502
A
HOH
135
3
HOH
HOH
503
A
HOH
129
3
HOH
HOH
504
A
HOH
63
3
HOH
HOH
505
A
HOH
55
3
HOH
HOH
506
A
HOH
110
3
HOH
HOH
507
A
HOH
30
3
HOH
HOH
508
A
HOH
119
3
HOH
HOH
509
A
HOH
76
3
HOH
HOH
510
A
HOH
137
3
HOH
HOH
511
A
HOH
71
3
HOH
HOH
512
A
HOH
19
3
HOH
HOH
513
A
HOH
57
3
HOH
HOH
514
A
HOH
97
3
HOH
HOH
515
A
HOH
16
3
HOH
HOH
516
A
HOH
105
3
HOH
HOH
517
A
HOH
69
3
HOH
HOH
518
A
HOH
65
3
HOH
HOH
519
A
HOH
21
3
HOH
HOH
520
A
HOH
22
3
HOH
HOH
521
A
HOH
61
3
HOH
HOH
522
A
HOH
13
3
HOH
HOH
523
A
HOH
20
3
HOH
HOH
524
A
HOH
62
3
HOH
HOH
525
A
HOH
26
3
HOH
HOH
526
A
HOH
120
3
HOH
HOH
527
A
HOH
88
3
HOH
HOH
528
A
HOH
152
3
HOH
HOH
529
A
HOH
25
3
HOH
HOH
530
A
HOH
106
3
HOH
HOH
531
A
HOH
18
3
HOH
HOH
532
A
HOH
50
3
HOH
HOH
533
A
HOH
17
3
HOH
HOH
534
A
HOH
2
3
HOH
HOH
535
A
HOH
54
3
HOH
HOH
536
A
HOH
3
3
HOH
HOH
537
A
HOH
59
3
HOH
HOH
538
A
HOH
5
3
HOH
HOH
539
A
HOH
9
3
HOH
HOH
540
A
HOH
10
3
HOH
HOH
541
A
HOH
70
3
HOH
HOH
542
A
HOH
56
3
HOH
HOH
543
A
HOH
98
3
HOH
HOH
544
A
HOH
103
3
HOH
HOH
545
A
HOH
12
3
HOH
HOH
546
A
HOH
75
3
HOH
HOH
547
A
HOH
6
3
HOH
HOH
548
A
HOH
48
3
HOH
HOH
549
A
HOH
52
3
HOH
HOH
550
A
HOH
41
3
HOH
HOH
551
A
HOH
4
3
HOH
HOH
552
A
HOH
14
3
HOH
HOH
553
A
HOH
40
3
HOH
HOH
554
A
HOH
44
3
HOH
HOH
555
A
HOH
127
3
HOH
HOH
556
A
HOH
37
3
HOH
HOH
557
A
HOH
15
3
HOH
HOH
558
A
HOH
66
3
HOH
HOH
559
A
HOH
35
3
HOH
HOH
560
A
HOH
140
3
HOH
HOH
561
A
HOH
47
3
HOH
HOH
562
A
HOH
91
3
HOH
HOH
563
A
HOH
29
3
HOH
HOH
564
A
HOH
11
3
HOH
HOH
565
A
HOH
7
3
HOH
HOH
566
A
HOH
42
3
HOH
HOH
567
A
HOH
43
3
HOH
HOH
568
A
HOH
115
3
HOH
HOH
569
A
HOH
28
3
HOH
HOH
570
A
HOH
144
3
HOH
HOH
571
A
HOH
83
3
HOH
HOH
572
A
HOH
121
3
HOH
HOH
573
A
HOH
33
3
HOH
HOH
574
A
HOH
101
3
HOH
HOH
575
A
HOH
49
3
HOH
HOH
576
A
HOH
64
3
HOH
HOH
577
A
HOH
34
3
HOH
HOH
578
A
HOH
24
3
HOH
HOH
579
A
HOH
31
3
HOH
HOH
580
A
HOH
38
3
HOH
HOH
581
A
HOH
72
3
HOH
HOH
582
A
HOH
92
3
HOH
HOH
583
A
HOH
108
3
HOH
HOH
584
A
HOH
23
3
HOH
HOH
585
A
HOH
109
3
HOH
HOH
586
A
HOH
68
3
HOH
HOH
587
A
HOH
36
3
HOH
HOH
588
A
HOH
156
3
HOH
HOH
589
A
HOH
89
3
HOH
HOH
590
A
HOH
102
3
HOH
HOH
591
A
HOH
99
3
HOH
HOH
592
A
HOH
39
3
HOH
HOH
593
A
HOH
80
3
HOH
HOH
594
A
HOH
94
3
HOH
HOH
595
A
HOH
32
3
HOH
HOH
596
A
HOH
60
3
HOH
HOH
597
A
HOH
116
3
HOH
HOH
598
A
HOH
148
3
HOH
HOH
599
A
HOH
113
3
HOH
HOH
600
A
HOH
117
3
HOH
HOH
601
A
HOH
85
3
HOH
HOH
602
A
HOH
27
3
HOH
HOH
603
A
HOH
1
3
HOH
HOH
604
A
HOH
51
3
HOH
HOH
605
A
HOH
111
3
HOH
HOH
606
A
HOH
87
3
HOH
HOH
607
A
HOH
153
3
HOH
HOH
608
A
HOH
67
3
HOH
HOH
609
A
HOH
114
3
HOH
HOH
610
A
HOH
79
3
HOH
HOH
611
A
HOH
151
3
HOH
HOH
612
A
HOH
78
3
HOH
HOH
613
A
HOH
146
3
HOH
HOH
614
A
HOH
74
3
HOH
HOH
615
A
HOH
147
3
HOH
HOH
616
A
HOH
73
3
HOH
HOH
617
A
HOH
100
3
HOH
HOH
618
A
HOH
46
3
HOH
HOH
619
A
HOH
150
3
HOH
HOH
620
A
HOH
77
3
HOH
HOH
621
A
HOH
126
3
HOH
HOH
622
A
HOH
125
3
HOH
HOH
623
A
HOH
155
3
HOH
HOH
624
A
HOH
96
3
HOH
HOH
625
A
HOH
84
3
HOH
HOH
626
A
HOH
130
3
HOH
HOH
627
A
HOH
53
3
HOH
HOH
628
A
HOH
58
3
HOH
HOH
629
A
HOH
131
3
HOH
HOH
630
A
HOH
95
3
HOH
HOH
631
A
HOH
122
3
HOH
HOH
632
A
HOH
86
3
HOH
HOH
633
A
HOH
82
3
HOH
HOH
634
A
HOH
154
3
HOH
HOH
635
A
HOH
90
3
HOH
HOH
636
A
HOH
138
3
HOH
HOH
637
A
HOH
139
3
HOH
HOH
638
A
HOH
104
3
HOH
HOH
639
A
HOH
118
3
HOH
HOH
640
A
HOH
81
3
HOH
HOH
641
A
HOH
149
3
HOH
HOH
642
A
HOH
132
3
HOH
HOH
643
A
HOH
124
3
HOH
HOH
644
A
HOH
45
3
HOH
HOH
101
B
HOH
142
3
HOH
HOH
102
B
HOH
8
3
HOH
HOH
103
B
HOH
133
3
HOH
HOH
104
B
n
1
297
A
n
2
298
A
PRO
299
n
3
PRO
299
A
GLU
300
n
4
GLU
300
A
PHE
301
n
5
PHE
301
A
LEU
302
n
6
LEU
302
A
GLY
303
n
7
GLY
303
A
GLU
304
n
8
GLU
304
A
GLU
305
n
9
GLU
305
A
ASP
306
n
10
ASP
306
A
ILE
307
n
11
ILE
307
A
PRO
308
n
12
PRO
308
A
ARG
309
n
13
ARG
309
A
GLU
310
n
14
GLU
310
A
PRO
311
n
15
PRO
311
A
ARG
312
n
16
ARG
312
A
ARG
313
n
17
ARG
313
A
ILE
314
n
18
ILE
314
A
VAL
315
n
19
VAL
315
A
ILE
316
n
20
ILE
316
A
HIS
317
n
21
HIS
317
A
ARG
318
n
22
ARG
318
A
GLY
319
n
23
GLY
319
A
SER
320
n
24
SER
320
A
THR
321
n
25
THR
321
A
GLY
322
n
26
GLY
322
A
LEU
323
n
27
LEU
323
A
GLY
324
n
28
GLY
324
A
PHE
325
n
29
PHE
325
A
ASN
326
n
30
ASN
326
A
ILE
327
n
31
ILE
327
A
VAL
328
n
32
VAL
328
A
GLY
329
n
33
GLY
329
A
GLY
330
n
34
GLY
330
A
GLU
331
n
35
GLU
331
A
ASP
332
n
36
ASP
332
A
GLY
333
n
37
GLY
333
A
GLU
334
n
38
GLU
334
A
GLY
335
n
39
GLY
335
A
ILE
336
n
40
ILE
336
A
PHE
337
n
41
PHE
337
A
ILE
338
n
42
ILE
338
A
SER
339
n
43
SER
339
A
PHE
340
n
44
PHE
340
A
ILE
341
n
45
ILE
341
A
LEU
342
n
46
LEU
342
A
ALA
343
n
47
ALA
343
A
GLY
344
n
48
GLY
344
A
GLY
345
n
49
GLY
345
A
PRO
346
n
50
PRO
346
A
ALA
347
n
51
ALA
347
A
ASP
348
n
52
ASP
348
A
LEU
349
n
53
LEU
349
A
SER
350
n
54
SER
350
A
GLY
351
n
55
GLY
351
A
GLU
352
n
56
GLU
352
A
LEU
353
n
57
LEU
353
A
ARG
354
n
58
ARG
354
A
LYS
355
n
59
LYS
355
A
GLY
356
n
60
GLY
356
A
ASP
357
n
61
ASP
357
A
GLN
358
n
62
GLN
358
A
ILE
359
n
63
ILE
359
A
LEU
360
n
64
LEU
360
A
SER
361
n
65
SER
361
A
VAL
362
n
66
VAL
362
A
ASN
363
n
67
ASN
363
A
GLY
364
n
68
GLY
364
A
VAL
365
n
69
VAL
365
A
ASP
366
n
70
ASP
366
A
LEU
367
n
71
LEU
367
A
ARG
368
n
72
ARG
368
A
ASN
369
n
73
ASN
369
A
ALA
370
n
74
ALA
370
A
SER
371
n
75
SER
371
A
ALA
372
n
76
ALA
372
A
GLU
373
n
77
GLU
373
A
GLN
374
n
78
GLN
374
A
ALA
375
n
79
ALA
375
A
ALA
376
n
80
ALA
376
A
ILE
377
n
81
ILE
377
A
ALA
378
n
82
ALA
378
A
LEU
379
n
83
LEU
379
A
LYS
380
n
84
LYS
380
A
ASN
381
n
85
ASN
381
A
ALA
382
n
86
ALA
382
A
GLY
383
n
87
GLY
383
A
GLN
384
n
88
GLN
384
A
THR
385
n
89
THR
385
A
VAL
386
n
90
VAL
386
A
THR
387
n
91
THR
387
A
ILE
388
n
92
ILE
388
A
ILE
389
n
93
ILE
389
A
ALA
390
n
94
ALA
390
A
GLN
391
n
95
GLN
391
A
TYR
392
n
96
TYR
392
A
LYS
393
n
97
LYS
393
A
PRO
394
n
98
PRO
394
A
GLU
395
n
99
GLU
395
A
GLU
396
n
100
GLU
396
A
TYR
397
n
101
TYR
397
A
SER
398
n
102
SER
398
A
ARG
399
n
103
ARG
399
A
PHE
400
n
104
PHE
400
A
GLU
401
n
105
GLU
401
A
ALA
402
n
106
ALA
402
A
ASN
403
n
107
ASN
403
A
SER
404
n
108
SER
404
A
ARG
405
n
109
ARG
405
A
VAL
406
n
110
VAL
406
A
ASP
407
n
111
ASP
407
A
SER
408
n
112
SER
408
A
SER
409
n
113
SER
409
A
GLY
410
n
114
GLY
410
A
ARG
411
n
115
ARG
411
A
ILE
412
n
116
ILE
412
A
VAL
413
n
117
VAL
413
A
THR
414
n
118
THR
414
A
ASP
415
n
119
ASP
415
A
n
1
1
B
n
2
2
B
n
3
3
B
TYR
4
n
4
TYR
4
B
LYS
5
n
5
LYS
5
B
GLN
6
n
6
GLN
6
B
THR
7
n
7
THR
7
B
SER
8
n
8
SER
8
B
VAL
9
n
9
VAL
9
B
2.0163
0.7956
-0.4293
1.9295
0.6650
2.0243
0.0546
-0.1137
0.0996
0.1458
-0.0554
-0.4865
-0.2030
0.3470
0.0305
0.1460
-0.0224
-0.0157
0.1620
0.0348
0.1881
refined
46.4960
65.8960
41.9586
X-RAY DIFFRACTION
3.3344
-1.8774
-0.3836
2.6993
-1.3475
3.5926
-0.0854
0.2798
-0.1210
-0.1947
0.0788
0.1252
0.3329
-0.4009
0.0336
0.1070
-0.0509
-0.0300
0.1445
0.0134
0.0692
refined
37.9785
58.3849
27.0758
X-RAY DIFFRACTION
1.7427
-0.0687
-1.0042
1.5310
-0.8140
1.7183
0.0201
0.2676
0.1265
-0.0728
0.1147
0.0776
-0.0681
-0.2991
-0.0705
0.0810
-0.0054
-0.0151
0.1198
0.0295
0.0757
refined
37.0338
61.8970
30.6361
X-RAY DIFFRACTION
2.1115
-1.3477
-0.1746
2.6284
-0.2041
2.6713
-0.1158
0.0145
0.0088
0.1145
0.1793
-0.1086
0.1357
0.0385
-0.0198
0.0866
-0.0135
-0.0020
0.0679
0.0061
0.0788
refined
45.1624
55.0137
35.9402
X-RAY DIFFRACTION
4.9680
-4.9661
0.7368
5.0098
-0.4305
2.1806
-0.0759
0.3272
-0.6698
-0.1651
-0.1514
1.0764
0.8338
0.0632
0.2020
0.3725
-0.0175
0.0307
0.2790
-0.0237
0.3723
refined
39.1189
55.0391
22.5668
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resid 299:319)
X-RAY DIFFRACTION
2
(chain A and resid 320:339)
X-RAY DIFFRACTION
3
(chain A and resid 340:381)
X-RAY DIFFRACTION
4
(chain A and resid 382:415)
X-RAY DIFFRACTION
5
(chain B and resid 4:9)
author_and_software_defined_assembly
PISA
2
dimeric
830
-3
6790
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
314
A
N
ILE
18
A
O
ILE
388
A
O
ILE
92
A
O
GLN
391
A
O
GLN
95
A
N
GLN
358
A
N
GLN
62
A
N
VAL
362
A
N
VAL
66
A
O
VAL
365
A
O
VAL
69
A
O
PHE
337
A
O
PHE
41
A
N
VAL
328
A
N
VAL
32
A
N
ILE
327
A
N
ILE
31
B
O
THR
7
B
O
THR
7
A
N
ARG
405
A
N
ARG
109
A
O
VAL
413
A
O
VAL
117
1
A
HOH
610
C
HOH
1
A
HOH
637
C
HOH
1
B
HOH
104
D
HOH
1
A
CG
ASP
332
A
CG
ASP
36
1
Y
1
A
OD1
ASP
332
A
OD1
ASP
36
1
Y
1
A
OD2
ASP
332
A
OD2
ASP
36
1
Y
1
A
CD
ARG
399
A
CD
ARG
103
1
Y
1
A
NE
ARG
399
A
NE
ARG
103
1
Y
1
A
CZ
ARG
399
A
CZ
ARG
103
1
Y
1
A
NH1
ARG
399
A
NH1
ARG
103
1
Y
1
A
NH2
ARG
399
A
NH2
ARG
103
1
Y
1
B
CG
LYS
5
B
CG
LYS
5
1
Y
1
B
CD
LYS
5
B
CD
LYS
5
1
Y
1
B
CE
LYS
5
B
CE
LYS
5
1
Y
1
B
NZ
LYS
5
B
NZ
LYS
5
1
Y
1
A
GLY
297
A
GLY
1
1
Y
1
A
SER
298
A
SER
2
1
Y
1
B
THR
1
B
THR
1
1
Y
1
B
LYS
2
B
LYS
2
1
Y
1
B
ASN
3
B
ASN
3
1
Y
1
A
B
OD1
HG
ASN
SER
326
8
1.60
B
1
A
A
O
O
HOH
HOH
551
603
2.15
0.2033
0.1751
0.1780
1.616
40.067
1513
15110
10.01
92.53
0.14
random selection
1
FREE R-VALUE
1.46
MOLECULAR REPLACEMENT
19.50
0.90
1.11
1BE9
ML
FLAT BULK SOLVENT MODEL
1.616
40.067
148
1070
0
0
922
0.006
1082
0.945
1487
23.284
410
0.048
166
0.004
209
0.3207
0.3110
1.6681
45
409
31.00
0.2396
0.2394
1.7277
124
1116
86.00
0.2400
0.1915
1.7969
141
1266
99.00
0.2025
0.1731
1.8786
146
1315
100.00
0.2213
0.1992
1.9777
146
1318
100.00
0.2149
0.1843
2.1016
147
1311
100.00
0.2192
0.1699
2.2638
147
1326
100.00
0.1769
0.1637
2.4916
149
1342
100.00
0.2025
0.1623
2.8521
149
1337
100.00
0.2230
0.1611
3.5930
153
1378
100.00
0.1743
0.1744
40.0791
166
1479
100.00
1.616
40.067
5HFB
15110
0.035
1
65.515
13.3
92.53
0.338
0.936
1
1.6
refinement
PHENIX
1.10pre_2104
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
model building
Coot
The third PDZ domain from the synaptic protein PSD-95 (H372A mutant) in complex with a C-terminal peptide derived from CRIPT
1
N
N
2
N
N
3
N
N
3
N
N
A
PHE
301
A
PHE
5
HELX_P
A
GLU
305
A
GLU
9
5
AA1
5
A
GLU
331
A
GLU
35
HELX_P
A
GLU
334
A
GLU
38
5
AA2
4
A
GLY
345
A
GLY
49
HELX_P
A
GLY
351
A
GLY
55
1
AA3
7
A
SER
371
A
SER
75
HELX_P
A
ASN
381
A
ASN
85
1
AA4
11
A
LYS
393
A
LYS
97
HELX_P
A
ARG
399
A
ARG
103
1
AA5
7
PEPTIDE BINDING PROTEIN
PDZ, GLGF, DHR, adhesion, synapse, synaptic density, peptide-binding domain, PEPTIDE BINDING PROTEIN
DLG4_RAT
UNP
1
302
P31016
LGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN
AGQTVTIIAQYKPEEYSRFEA
CRIPT_RAT
UNP
2
93
Q792Q4
TKNYKQTSV
302
402
5HFB
302
402
P31016
A
1
6
106
93
101
5HFB
1
9
Q792Q4
B
2
1
9
1
expression tag
GLY
297
5HFB
A
P31016
UNP
1
1
expression tag
SER
298
5HFB
A
P31016
UNP
2
1
expression tag
PRO
299
5HFB
A
P31016
UNP
3
1
expression tag
GLU
300
5HFB
A
P31016
UNP
4
1
expression tag
PHE
301
5HFB
A
P31016
UNP
5
1
HIS
engineered mutation
ALA
372
5HFB
A
P31016
UNP
372
76
1
expression tag
ASN
403
5HFB
A
P31016
UNP
107
1
expression tag
SER
404
5HFB
A
P31016
UNP
108
1
expression tag
ARG
405
5HFB
A
P31016
UNP
109
1
expression tag
VAL
406
5HFB
A
P31016
UNP
110
1
expression tag
ASP
407
5HFB
A
P31016
UNP
111
1
expression tag
SER
408
5HFB
A
P31016
UNP
112
1
expression tag
SER
409
5HFB
A
P31016
UNP
113
1
expression tag
GLY
410
5HFB
A
P31016
UNP
114
1
expression tag
ARG
411
5HFB
A
P31016
UNP
115
1
expression tag
ILE
412
5HFB
A
P31016
UNP
116
1
expression tag
VAL
413
5HFB
A
P31016
UNP
117
1
expression tag
THR
414
5HFB
A
P31016
UNP
118
1
expression tag
ASP
415
5HFB
A
P31016
UNP
119
4
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
312
A
ARG
16
A
HIS
317
A
HIS
21
A
THR
385
A
THR
89
A
TYR
392
A
TYR
96
A
ASP
357
A
ASP
61
A
VAL
362
A
VAL
66
A
VAL
365
A
VAL
69
A
ASP
366
A
ASP
70
A
ILE
336
A
ILE
40
A
ILE
341
A
ILE
45
A
PHE
325
A
PHE
29
A
GLY
329
A
GLY
33
B
GLN
6
B
GLN
6
B
SER
8
B
SER
8
A
SER
404
A
SER
108
A
VAL
406
A
VAL
110
A
ILE
412
A
ILE
116
A
THR
414
A
THR
118
213
P 41 3 2