0.025536 0.000000 0.000000 0.000000 0.025310 0.000000 0.000000 0.000000 0.007487 0.00000 0.00000 0.00000 Scapin, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 39.160 39.510 133.560 C35 H38 F6 N4 O5 708.690 {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-3-[4-(trifluoromethyl)phenoxy]-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}piperidin-3-yl]methanone non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N F N 2 N F N 3 N F N 4 N F N 5 N F N 6 N F N 7 N C N 8 N C N 9 N C N 10 N N N 11 R C N 12 S C N 13 N C N 14 N N N 15 N O N 16 N O Y 17 N C Y 18 N C Y 19 N C Y 20 N C Y 21 N C Y 22 N C N 23 N C N 24 N O Y 25 N C Y 26 N C Y 27 N N Y 28 N C Y 29 N C Y 30 N C N 31 N C N 32 N C N 33 N N N 34 N C N 35 N C Y 36 N C Y 37 N C Y 38 N C Y 39 N C Y 40 N C Y 41 N C N 42 N O N 43 N C N 44 N C N 45 N O N 46 N C N 47 N C N 48 N C N 49 N C N 50 N C N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N O N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N N N 103 S C N 104 N C N 105 N O N 106 N C N 107 N C N 108 N C N 109 N N N 110 N C N 111 N N N 112 N N N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N N N 130 S C N 131 N C N 132 N O N 133 N C N 134 N C N 135 N O N 136 N N N 137 N O N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C N 151 N C N 152 N O N 153 N O N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N N N 163 R C N 164 N C N 165 N O N 166 N C N 167 N S N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 N C N 181 N C N 182 N C N 183 N O N 184 N N N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N N N 197 S C N 198 N C N 199 N O N 200 N C N 201 N C N 202 N C N 203 N O N 204 N O N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 N C N 217 N C N 218 N O N 219 N O N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 N C Y 230 N C Y 231 N N Y 232 N C Y 233 N C Y 234 N N N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N O N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 S C N 254 N C N 255 N C N 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 N C N 276 N C N 277 N C N 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N C N 301 N N N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N S N 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C N 366 N C N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N O N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 R C N 397 N O N 398 N C N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C N 420 N O N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N C N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H Y 1 N doub Y 2 N sing Y 3 N sing N 4 N sing Y 5 N doub N 6 N sing Y 7 N doub Y 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing Y 35 N doub Y 36 N sing Y 37 N sing N 38 N sing N 39 N sing N 40 N sing Y 41 N doub Y 42 N doub N 43 N sing Y 44 N doub Y 45 N sing Y 46 N sing Y 47 N sing Y 48 N doub N 49 N sing Y 50 N doub Y 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing Y 232 N sing Y 233 N doub Y 234 N doub N 235 N sing Y 236 N sing N 237 N sing Y 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing Y 340 N doub Y 341 N sing Y 342 N sing N 343 N sing Y 344 N doub N 345 N sing Y 346 N doub N 347 N sing Y 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing Y 409 N doub Y 410 N sing Y 411 N sing N 412 N sing Y 413 N doub N 414 N sing Y 415 N doub N 416 N sing Y 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing US Acs Med.Chem.Lett. 1948-5875 7 324 329 10.1021/acsmedchemlett.5b00472 26985323 Discovery of Novel 3,3-Disubstituted Piperidines as Orally Bioavailable, Potent, and Efficacious HDM2-p53 Inhibitors. 2016 10.2210/pdb5hmk/pdb pdb_00005hmk 100 1 IMAGE PLATE 2006-09-29 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-D 12526.323 E3 ubiquitin-protein ligase Mdm2 6.3.2.- F55Y, Y76H 2 man polymer 708.690 {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-3-[4-(trifluoromethyl)phenoxy]-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}piperidin-3-yl]methanone 2 syn non-polymer 18.015 water 54 nat water Double minute 2 protein,Hdm2,Oncoprotein Mdm2,p53-binding protein Mdm2 no no SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLYYLGQYIMTKRLYDEKQQHIVHCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQESSDSGTSVSEN SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLYYLGQYIMTKRLYDEKQQHIVHCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQESSDSGTSVSEN A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 109 MDM2 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.17 43.24 VAPOR DIFFUSION, SITTING DROP 4.0 1.8-2.2 M ammonium sulfate, 100 mM Na Citrate/citric acid 303 chem_comp_atom chem_comp_bond database_2 pdbx_prerelease_seq pdbx_struct_oper_list repository Initial release Data collection Database references Derived calculations 1 0 2016-04-06 1 1 2024-03-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_oper_list.symmetry_operation N RCSB Y RCSB 2016-01-16 REL REL 62Q {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-3-[4-(trifluoromethyl)phenoxy]-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}piperidin-3-yl]methanone HOH water SCH 1001 2 62Q 62Q 1001 A SCH 1001 2 62Q 62Q 1001 B HOH 3105 3 HOH HOH 1101 A HOH 4 3 HOH HOH 1102 A HOH 3101 3 HOH HOH 1103 A HOH 20 3 HOH HOH 1104 A HOH 3103 3 HOH HOH 1105 A HOH 3115 3 HOH HOH 1106 A HOH 8 3 HOH HOH 1107 A HOH 3108 3 HOH HOH 1108 A HOH 3104 3 HOH HOH 1109 A HOH 18 3 HOH HOH 1110 A HOH 15 3 HOH HOH 1111 A HOH 13 3 HOH HOH 1112 A HOH 12 3 HOH HOH 1113 A HOH 19 3 HOH HOH 1114 A HOH 28 3 HOH HOH 1115 A HOH 32 3 HOH HOH 1116 A HOH 39 3 HOH HOH 1117 A HOH 30 3 HOH HOH 1118 A HOH 3106 3 HOH HOH 1101 B HOH 3114 3 HOH HOH 1102 B HOH 3119 3 HOH HOH 1103 B HOH 23 3 HOH HOH 1104 B HOH 29 3 HOH HOH 1105 B HOH 3112 3 HOH HOH 1106 B HOH 25 3 HOH HOH 1107 B HOH 3121 3 HOH HOH 1108 B HOH 33 3 HOH HOH 1109 B HOH 3118 3 HOH HOH 1110 B HOH 3111 3 HOH HOH 1111 B HOH 22 3 HOH HOH 1112 B HOH 3107 3 HOH HOH 1113 B HOH 3122 3 HOH HOH 1114 B HOH 3120 3 HOH HOH 1115 B HOH 17 3 HOH HOH 1116 B HOH 2 3 HOH HOH 1117 B HOH 16 3 HOH HOH 1118 B HOH 3125 3 HOH HOH 1119 B HOH 11 3 HOH HOH 1120 B HOH 3110 3 HOH HOH 1121 B HOH 5 3 HOH HOH 1122 B HOH 3113 3 HOH HOH 1123 B HOH 21 3 HOH HOH 1124 B HOH 3 3 HOH HOH 1125 B HOH 1 3 HOH HOH 1126 B HOH 3116 3 HOH HOH 1127 B HOH 3124 3 HOH HOH 1128 B HOH 3123 3 HOH HOH 1129 B HOH 9 3 HOH HOH 1130 B HOH 26 3 HOH HOH 1131 B HOH 6 3 HOH HOH 1132 B HOH 31 3 HOH HOH 1133 B HOH 36 3 HOH HOH 1134 B HOH 24 3 HOH HOH 1135 B HOH 7 3 HOH HOH 1136 B n 1 17 A n 2 18 A n 3 19 A n 4 20 A n 5 21 A n 6 22 A n 7 23 A n 8 24 A n 9 25 A THR 26 n 10 THR 26 A LEU 27 n 11 LEU 27 A VAL 28 n 12 VAL 28 A ARG 29 n 13 ARG 29 A PRO 30 n 14 PRO 30 A LYS 31 n 15 LYS 31 A PRO 32 n 16 PRO 32 A LEU 33 n 17 LEU 33 A LEU 34 n 18 LEU 34 A LEU 35 n 19 LEU 35 A LYS 36 n 20 LYS 36 A LEU 37 n 21 LEU 37 A LEU 38 n 22 LEU 38 A LYS 39 n 23 LYS 39 A SER 40 n 24 SER 40 A VAL 41 n 25 VAL 41 A GLY 42 n 26 GLY 42 A ALA 43 n 27 ALA 43 A GLN 44 n 28 GLN 44 A LYS 45 n 29 LYS 45 A ASP 46 n 30 ASP 46 A THR 47 n 31 THR 47 A TYR 48 n 32 TYR 48 A THR 49 n 33 THR 49 A MET 50 n 34 MET 50 A LYS 51 n 35 LYS 51 A GLU 52 n 36 GLU 52 A VAL 53 n 37 VAL 53 A LEU 54 n 38 LEU 54 A TYR 55 n 39 TYR 55 A TYR 56 n 40 TYR 56 A LEU 57 n 41 LEU 57 A GLY 58 n 42 GLY 58 A GLN 59 n 43 GLN 59 A TYR 60 n 44 TYR 60 A ILE 61 n 45 ILE 61 A MET 62 n 46 MET 62 A THR 63 n 47 THR 63 A LYS 64 n 48 LYS 64 A ARG 65 n 49 ARG 65 A LEU 66 n 50 LEU 66 A TYR 67 n 51 TYR 67 A ASP 68 n 52 ASP 68 A GLU 69 n 53 GLU 69 A LYS 70 n 54 LYS 70 A GLN 71 n 55 GLN 71 A GLN 72 n 56 GLN 72 A HIS 73 n 57 HIS 73 A ILE 74 n 58 ILE 74 A VAL 75 n 59 VAL 75 A HIS 76 n 60 HIS 76 A CYS 77 n 61 CYS 77 A SER 78 n 62 SER 78 A ASN 79 n 63 ASN 79 A ASP 80 n 64 ASP 80 A LEU 81 n 65 LEU 81 A LEU 82 n 66 LEU 82 A GLY 83 n 67 GLY 83 A ASP 84 n 68 ASP 84 A LEU 85 n 69 LEU 85 A PHE 86 n 70 PHE 86 A GLY 87 n 71 GLY 87 A VAL 88 n 72 VAL 88 A PRO 89 n 73 PRO 89 A SER 90 n 74 SER 90 A PHE 91 n 75 PHE 91 A SER 92 n 76 SER 92 A VAL 93 n 77 VAL 93 A LYS 94 n 78 LYS 94 A GLU 95 n 79 GLU 95 A HIS 96 n 80 HIS 96 A ARG 97 n 81 ARG 97 A LYS 98 n 82 LYS 98 A ILE 99 n 83 ILE 99 A TYR 100 n 84 TYR 100 A THR 101 n 85 THR 101 A MET 102 n 86 MET 102 A ILE 103 n 87 ILE 103 A TYR 104 n 88 TYR 104 A ARG 105 n 89 ARG 105 A ASN 106 n 90 ASN 106 A LEU 107 n 91 LEU 107 A VAL 108 n 92 VAL 108 A VAL 109 n 93 VAL 109 A VAL 110 n 94 VAL 110 A ASN 111 n 95 ASN 111 A n 96 112 A n 97 113 A n 98 114 A n 99 115 A n 100 116 A n 101 117 A n 102 118 A n 103 119 A n 104 120 A n 105 121 A n 106 122 A n 107 123 A n 108 124 A n 109 125 A n 1 17 B n 2 18 B n 3 19 B n 4 20 B ALA 21 n 5 ALA 21 B SER 22 n 6 SER 22 B GLU 23 n 7 GLU 23 B GLN 24 n 8 GLN 24 B GLU 25 n 9 GLU 25 B THR 26 n 10 THR 26 B LEU 27 n 11 LEU 27 B VAL 28 n 12 VAL 28 B ARG 29 n 13 ARG 29 B PRO 30 n 14 PRO 30 B LYS 31 n 15 LYS 31 B PRO 32 n 16 PRO 32 B LEU 33 n 17 LEU 33 B LEU 34 n 18 LEU 34 B LEU 35 n 19 LEU 35 B LYS 36 n 20 LYS 36 B LEU 37 n 21 LEU 37 B LEU 38 n 22 LEU 38 B LYS 39 n 23 LYS 39 B SER 40 n 24 SER 40 B VAL 41 n 25 VAL 41 B GLY 42 n 26 GLY 42 B ALA 43 n 27 ALA 43 B GLN 44 n 28 GLN 44 B LYS 45 n 29 LYS 45 B ASP 46 n 30 ASP 46 B THR 47 n 31 THR 47 B TYR 48 n 32 TYR 48 B THR 49 n 33 THR 49 B MET 50 n 34 MET 50 B LYS 51 n 35 LYS 51 B GLU 52 n 36 GLU 52 B VAL 53 n 37 VAL 53 B LEU 54 n 38 LEU 54 B TYR 55 n 39 TYR 55 B TYR 56 n 40 TYR 56 B LEU 57 n 41 LEU 57 B GLY 58 n 42 GLY 58 B GLN 59 n 43 GLN 59 B TYR 60 n 44 TYR 60 B ILE 61 n 45 ILE 61 B MET 62 n 46 MET 62 B THR 63 n 47 THR 63 B LYS 64 n 48 LYS 64 B ARG 65 n 49 ARG 65 B LEU 66 n 50 LEU 66 B TYR 67 n 51 TYR 67 B ASP 68 n 52 ASP 68 B GLU 69 n 53 GLU 69 B LYS 70 n 54 LYS 70 B GLN 71 n 55 GLN 71 B GLN 72 n 56 GLN 72 B HIS 73 n 57 HIS 73 B ILE 74 n 58 ILE 74 B VAL 75 n 59 VAL 75 B HIS 76 n 60 HIS 76 B CYS 77 n 61 CYS 77 B SER 78 n 62 SER 78 B ASN 79 n 63 ASN 79 B ASP 80 n 64 ASP 80 B LEU 81 n 65 LEU 81 B LEU 82 n 66 LEU 82 B GLY 83 n 67 GLY 83 B ASP 84 n 68 ASP 84 B LEU 85 n 69 LEU 85 B PHE 86 n 70 PHE 86 B GLY 87 n 71 GLY 87 B VAL 88 n 72 VAL 88 B PRO 89 n 73 PRO 89 B SER 90 n 74 SER 90 B PHE 91 n 75 PHE 91 B SER 92 n 76 SER 92 B VAL 93 n 77 VAL 93 B LYS 94 n 78 LYS 94 B GLU 95 n 79 GLU 95 B HIS 96 n 80 HIS 96 B ARG 97 n 81 ARG 97 B LYS 98 n 82 LYS 98 B ILE 99 n 83 ILE 99 B TYR 100 n 84 TYR 100 B THR 101 n 85 THR 101 B MET 102 n 86 MET 102 B ILE 103 n 87 ILE 103 B TYR 104 n 88 TYR 104 B ARG 105 n 89 ARG 105 B ASN 106 n 90 ASN 106 B LEU 107 n 91 LEU 107 B VAL 108 n 92 VAL 108 B VAL 109 n 93 VAL 109 B VAL 110 n 94 VAL 110 B ASN 111 n 95 ASN 111 B n 96 112 B n 97 113 B n 98 114 B n 99 115 B n 100 116 B n 101 117 B n 102 118 B n 103 119 B n 104 120 B n 105 121 B n 106 122 B n 107 123 B n 108 124 B n 109 125 B 1.2653 0.3328 -0.0839 2.7784 -0.6563 3.2921 -0.0212 0.1832 -0.0508 0.3129 -0.0027 -0.1799 -0.5384 -0.0480 0.0239 0.4413 0.0635 -0.2154 -0.3618 -0.0197 -0.2861 refined 15.9732 4.9767 25.0759 X-RAY DIFFRACTION 2.2210 1.1653 -0.8872 3.3983 -1.1149 4.0273 0.0026 0.0067 0.0693 0.4490 0.0022 -0.1306 -0.4216 -0.0754 -0.0049 0.0144 0.0589 -0.0584 -0.0386 -0.0132 -0.0855 refined 8.0633 -4.8812 7.6067 X-RAY DIFFRACTION A 26 A 111 X-RAY DIFFRACTION 1 { A|26 - A|111 A|1001 - A|1001 } A 1001 A 1001 X-RAY DIFFRACTION 1 { A|26 - A|111 A|1001 - A|1001 } B 21 B 111 X-RAY DIFFRACTION 2 { B|21 - B|111 B|1001 - B|1001 } B 1001 B 1001 X-RAY DIFFRACTION 2 { B|21 - B|111 B|1001 - B|1001 } author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 2 dimeric 1340 -2 10070 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 48 A O TYR 32 A N VAL 28 A N VAL 12 A N ARG 29 A N ARG 13 A O VAL 108 A O VAL 92 A N VAL 75 A N VAL 59 A O PHE 91 A O PHE 75 B O TYR 48 B O TYR 32 B N VAL 28 B N VAL 12 B N ARG 29 B N ARG 13 B O VAL 108 B O VAL 92 B N ASP 68 B N ASP 52 B O GLN 71 B O GLN 55 B N VAL 75 B N VAL 59 B O PHE 91 B O PHE 75 1 A SER 17 A SER 1 1 Y 1 A GLN 18 A GLN 2 1 Y 1 A ILE 19 A ILE 3 1 Y 1 A PRO 20 A PRO 4 1 Y 1 A ALA 21 A ALA 5 1 Y 1 A SER 22 A SER 6 1 Y 1 A GLU 23 A GLU 7 1 Y 1 A GLN 24 A GLN 8 1 Y 1 A GLU 25 A GLU 9 1 Y 1 A GLN 112 A GLN 96 1 Y 1 A GLN 113 A GLN 97 1 Y 1 A GLU 114 A GLU 98 1 Y 1 A SER 115 A SER 99 1 Y 1 A SER 116 A SER 100 1 Y 1 A ASP 117 A ASP 101 1 Y 1 A SER 118 A SER 102 1 Y 1 A GLY 119 A GLY 103 1 Y 1 A THR 120 A THR 104 1 Y 1 A SER 121 A SER 105 1 Y 1 A VAL 122 A VAL 106 1 Y 1 A SER 123 A SER 107 1 Y 1 A GLU 124 A GLU 108 1 Y 1 A ASN 125 A ASN 109 1 Y 1 B SER 17 B SER 1 1 Y 1 B GLN 18 B GLN 2 1 Y 1 B ILE 19 B ILE 3 1 Y 1 B PRO 20 B PRO 4 1 Y 1 B GLN 112 B GLN 96 1 Y 1 B GLN 113 B GLN 97 1 Y 1 B GLU 114 B GLU 98 1 Y 1 B SER 115 B SER 99 1 Y 1 B SER 116 B SER 100 1 Y 1 B ASP 117 B ASP 101 1 Y 1 B SER 118 B SER 102 1 Y 1 B GLY 119 B GLY 103 1 Y 1 B THR 120 B THR 104 1 Y 1 B SER 121 B SER 105 1 Y 1 B VAL 122 B VAL 106 1 Y 1 B SER 123 B SER 107 1 Y 1 B GLU 124 B GLU 108 1 Y 1 B ASN 125 B ASN 109 1 Y 1 B LEU 66 -84.59 48.07 1 B CYS 77 -141.09 22.11 62.56 -4.5459 0.0000 0.0000 10.3382 0.0000 -5.7923 0.9193 0.9161 0.2612 0.2284 0.2299 2.17 19.75 517 10921 4.73 94.51 0.301 RANDOM 1 THROUGHOUT 0.0 FOURIER SYNTHESIS 0.314 0.222 0.221 0.457 2.17 19.75 54 1612 100 0 1458 0.010 1594 HARMONIC 2.00 1.09 2161 HARMONIC 2.00 665 SINUSOIDAL 2.00 31 HARMONIC 2.00 219 HARMONIC 5.00 1594 HARMONIC 20.00 2.94 21.67 10 HARMONIC 0.00 187 SEMIHARMONIC 5.00 1817 SEMIHARMONIC 4.00 0.2963 0.2471 0.2495 2.38 125 2366 2491 6 5.02 94.51 50.22 2.15 20.0 5HMK 10960 0.077 1 14.3 4.3 95.7 1 refinement BUSTER 2.11.5 data scaling SCALEPACK data extraction PDB_EXTRACT 3.15 data reduction HKL-2000 phasing REFMAC HDM2 in complex with a 3,3-Disubstituted Piperidine 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A LYS 31 A LYS 15 HELX_P A SER 40 A SER 24 1 AA1 10 A MET 50 A MET 34 HELX_P A ARG 65 A ARG 49 1 AA2 16 A ASP 80 A ASP 64 HELX_P A GLY 87 A GLY 71 1 AA3 8 A GLU 95 A GLU 79 HELX_P A ARG 105 A ARG 89 1 AA4 11 B LYS 31 B LYS 15 HELX_P B SER 40 B SER 24 1 AA5 10 B MET 50 B MET 34 HELX_P B LYS 64 B LYS 48 1 AA6 15 B ASP 80 B ASP 64 HELX_P B GLY 87 B GLY 71 1 AA7 8 B GLU 95 B GLU 79 HELX_P B ARG 105 B ARG 89 1 AA8 11 ligase/ligase inhibitor Oncology, E3 ubiquitin-protein ligase, p53/TP53, ligase-ligase inhibitor complex MDM2_HUMAN UNP 1 23 Q00987 Q00987-11 SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQESSDSGTSVSEN 23 131 5HMK 17 125 Q00987 A 1 1 109 23 131 5HMK 17 125 Q00987 B 1 1 109 1 PHE engineered mutation TYR 55 5HMK A Q00987 UNP 61 39 1 TYR engineered mutation HIS 76 5HMK A Q00987 UNP 82 60 2 PHE engineered mutation TYR 55 5HMK B Q00987 UNP 61 39 2 TYR engineered mutation HIS 76 5HMK B Q00987 UNP 82 60 3 2 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 48 A TYR 32 A THR 49 A THR 33 A LEU 27 A LEU 11 A PRO 30 A PRO 14 A LEU 107 A LEU 91 A VAL 110 A VAL 94 A ILE 74 A ILE 58 A HIS 76 A HIS 60 A SER 90 A SER 74 A SER 92 A SER 76 B TYR 48 B TYR 32 B THR 49 B THR 33 B LEU 27 B LEU 11 B PRO 30 B PRO 14 B LEU 107 B LEU 91 B VAL 109 B VAL 93 B TYR 67 B TYR 51 B ASP 68 B ASP 52 B GLN 71 B GLN 55 B HIS 76 B HIS 60 B SER 90 B SER 74 B SER 92 B SER 76 binding site for residue 62Q A 1001 A 62Q 1001 Software 14 binding site for residue 62Q B 1001 B 62Q 1001 Software 17 A LEU 54 A LEU 38 14 1_555 A LEU 57 A LEU 41 14 1_555 A GLY 58 A GLY 42 14 1_555 A ILE 61 A ILE 45 14 1_555 A MET 62 A MET 46 14 1_555 A TYR 67 A TYR 51 14 1_555 A GLN 72 A GLN 56 14 1_555 A PHE 91 A PHE 75 14 1_555 A VAL 93 A VAL 77 14 1_555 A HIS 96 A HIS 80 14 1_555 A ILE 99 A ILE 83 14 1_555 A TYR 100 A TYR 84 14 1_555 B LYS 51 B LYS 35 14 1_555 B 62Q 1001 D 62Q 14 1_555 A LYS 51 A LYS 35 17 1_555 A GLU 52 A GLU 36 17 1_555 A TYR 55 A TYR 39 17 1_555 A 62Q 1001 C 62Q 17 1_555 B GLN 24 B GLN 8 17 1_555 B LEU 54 B LEU 38 17 1_555 B LEU 57 B LEU 41 17 1_555 B GLY 58 B GLY 42 17 1_555 B ILE 61 B ILE 45 17 1_555 B MET 62 B MET 46 17 1_555 B TYR 67 B TYR 51 17 1_555 B GLN 72 B GLN 56 17 1_555 B PHE 91 B PHE 75 17 1_555 B VAL 93 B VAL 77 17 1_555 B HIS 96 B HIS 80 17 1_555 B ILE 99 B ILE 83 17 1_555 B TYR 100 B TYR 84 17 1_555 19 P 21 21 21