0.025536
0.000000
0.000000
0.000000
0.025310
0.000000
0.000000
0.000000
0.007487
0.00000
0.00000
0.00000
Scapin, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
39.160
39.510
133.560
C35 H38 F6 N4 O5
708.690
{4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-3-[4-(trifluoromethyl)phenoxy]-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}piperidin-3-yl]methanone
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
F
N
2
N
F
N
3
N
F
N
4
N
F
N
5
N
F
N
6
N
F
N
7
N
C
N
8
N
C
N
9
N
C
N
10
N
N
N
11
R
C
N
12
S
C
N
13
N
C
N
14
N
N
N
15
N
O
N
16
N
O
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
N
23
N
C
N
24
N
O
Y
25
N
C
Y
26
N
C
Y
27
N
N
Y
28
N
C
Y
29
N
C
Y
30
N
C
N
31
N
C
N
32
N
C
N
33
N
N
N
34
N
C
N
35
N
C
Y
36
N
C
Y
37
N
C
Y
38
N
C
Y
39
N
C
Y
40
N
C
Y
41
N
C
N
42
N
O
N
43
N
C
N
44
N
C
N
45
N
O
N
46
N
C
N
47
N
C
N
48
N
C
N
49
N
C
N
50
N
C
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
N
N
103
S
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
N
N
110
N
C
N
111
N
N
N
112
N
N
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
N
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
R
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
S
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
N
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
O
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
Y
230
N
C
Y
231
N
N
Y
232
N
C
Y
233
N
C
Y
234
N
N
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
S
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
N
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
S
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
R
C
N
397
N
O
N
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
N
420
N
O
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
N
4
N
sing
Y
5
N
doub
N
6
N
sing
Y
7
N
doub
Y
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
Y
35
N
doub
Y
36
N
sing
Y
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
Y
41
N
doub
Y
42
N
doub
N
43
N
sing
Y
44
N
doub
Y
45
N
sing
Y
46
N
sing
Y
47
N
sing
Y
48
N
doub
N
49
N
sing
Y
50
N
doub
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
Y
232
N
sing
Y
233
N
doub
Y
234
N
doub
N
235
N
sing
Y
236
N
sing
N
237
N
sing
Y
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
US
Acs Med.Chem.Lett.
1948-5875
7
324
329
10.1021/acsmedchemlett.5b00472
26985323
Discovery of Novel 3,3-Disubstituted Piperidines as Orally Bioavailable, Potent, and Efficacious HDM2-p53 Inhibitors.
2016
10.2210/pdb5hmk/pdb
pdb_00005hmk
100
1
IMAGE PLATE
2006-09-29
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-D
12526.323
E3 ubiquitin-protein ligase Mdm2
6.3.2.-
F55Y, Y76H
2
man
polymer
708.690
{4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-3-[4-(trifluoromethyl)phenoxy]-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}piperidin-3-yl]methanone
2
syn
non-polymer
18.015
water
54
nat
water
Double minute 2 protein,Hdm2,Oncoprotein Mdm2,p53-binding protein Mdm2
no
no
SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLYYLGQYIMTKRLYDEKQQHIVHCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVNQQESSDSGTSVSEN
SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLYYLGQYIMTKRLYDEKQQHIVHCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVNQQESSDSGTSVSEN
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
109
MDM2
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.17
43.24
VAPOR DIFFUSION, SITTING DROP
4.0
1.8-2.2 M ammonium sulfate, 100 mM Na Citrate/citric acid
303
chem_comp_atom
chem_comp_bond
database_2
pdbx_prerelease_seq
pdbx_struct_oper_list
repository
Initial release
Data collection
Database references
Derived calculations
1
0
2016-04-06
1
1
2024-03-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_oper_list.symmetry_operation
N
RCSB
Y
RCSB
2016-01-16
REL
REL
62Q
{4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-3-[4-(trifluoromethyl)phenoxy]-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}piperidin-3-yl]methanone
HOH
water
SCH
1001
2
62Q
62Q
1001
A
SCH
1001
2
62Q
62Q
1001
B
HOH
3105
3
HOH
HOH
1101
A
HOH
4
3
HOH
HOH
1102
A
HOH
3101
3
HOH
HOH
1103
A
HOH
20
3
HOH
HOH
1104
A
HOH
3103
3
HOH
HOH
1105
A
HOH
3115
3
HOH
HOH
1106
A
HOH
8
3
HOH
HOH
1107
A
HOH
3108
3
HOH
HOH
1108
A
HOH
3104
3
HOH
HOH
1109
A
HOH
18
3
HOH
HOH
1110
A
HOH
15
3
HOH
HOH
1111
A
HOH
13
3
HOH
HOH
1112
A
HOH
12
3
HOH
HOH
1113
A
HOH
19
3
HOH
HOH
1114
A
HOH
28
3
HOH
HOH
1115
A
HOH
32
3
HOH
HOH
1116
A
HOH
39
3
HOH
HOH
1117
A
HOH
30
3
HOH
HOH
1118
A
HOH
3106
3
HOH
HOH
1101
B
HOH
3114
3
HOH
HOH
1102
B
HOH
3119
3
HOH
HOH
1103
B
HOH
23
3
HOH
HOH
1104
B
HOH
29
3
HOH
HOH
1105
B
HOH
3112
3
HOH
HOH
1106
B
HOH
25
3
HOH
HOH
1107
B
HOH
3121
3
HOH
HOH
1108
B
HOH
33
3
HOH
HOH
1109
B
HOH
3118
3
HOH
HOH
1110
B
HOH
3111
3
HOH
HOH
1111
B
HOH
22
3
HOH
HOH
1112
B
HOH
3107
3
HOH
HOH
1113
B
HOH
3122
3
HOH
HOH
1114
B
HOH
3120
3
HOH
HOH
1115
B
HOH
17
3
HOH
HOH
1116
B
HOH
2
3
HOH
HOH
1117
B
HOH
16
3
HOH
HOH
1118
B
HOH
3125
3
HOH
HOH
1119
B
HOH
11
3
HOH
HOH
1120
B
HOH
3110
3
HOH
HOH
1121
B
HOH
5
3
HOH
HOH
1122
B
HOH
3113
3
HOH
HOH
1123
B
HOH
21
3
HOH
HOH
1124
B
HOH
3
3
HOH
HOH
1125
B
HOH
1
3
HOH
HOH
1126
B
HOH
3116
3
HOH
HOH
1127
B
HOH
3124
3
HOH
HOH
1128
B
HOH
3123
3
HOH
HOH
1129
B
HOH
9
3
HOH
HOH
1130
B
HOH
26
3
HOH
HOH
1131
B
HOH
6
3
HOH
HOH
1132
B
HOH
31
3
HOH
HOH
1133
B
HOH
36
3
HOH
HOH
1134
B
HOH
24
3
HOH
HOH
1135
B
HOH
7
3
HOH
HOH
1136
B
n
1
17
A
n
2
18
A
n
3
19
A
n
4
20
A
n
5
21
A
n
6
22
A
n
7
23
A
n
8
24
A
n
9
25
A
THR
26
n
10
THR
26
A
LEU
27
n
11
LEU
27
A
VAL
28
n
12
VAL
28
A
ARG
29
n
13
ARG
29
A
PRO
30
n
14
PRO
30
A
LYS
31
n
15
LYS
31
A
PRO
32
n
16
PRO
32
A
LEU
33
n
17
LEU
33
A
LEU
34
n
18
LEU
34
A
LEU
35
n
19
LEU
35
A
LYS
36
n
20
LYS
36
A
LEU
37
n
21
LEU
37
A
LEU
38
n
22
LEU
38
A
LYS
39
n
23
LYS
39
A
SER
40
n
24
SER
40
A
VAL
41
n
25
VAL
41
A
GLY
42
n
26
GLY
42
A
ALA
43
n
27
ALA
43
A
GLN
44
n
28
GLN
44
A
LYS
45
n
29
LYS
45
A
ASP
46
n
30
ASP
46
A
THR
47
n
31
THR
47
A
TYR
48
n
32
TYR
48
A
THR
49
n
33
THR
49
A
MET
50
n
34
MET
50
A
LYS
51
n
35
LYS
51
A
GLU
52
n
36
GLU
52
A
VAL
53
n
37
VAL
53
A
LEU
54
n
38
LEU
54
A
TYR
55
n
39
TYR
55
A
TYR
56
n
40
TYR
56
A
LEU
57
n
41
LEU
57
A
GLY
58
n
42
GLY
58
A
GLN
59
n
43
GLN
59
A
TYR
60
n
44
TYR
60
A
ILE
61
n
45
ILE
61
A
MET
62
n
46
MET
62
A
THR
63
n
47
THR
63
A
LYS
64
n
48
LYS
64
A
ARG
65
n
49
ARG
65
A
LEU
66
n
50
LEU
66
A
TYR
67
n
51
TYR
67
A
ASP
68
n
52
ASP
68
A
GLU
69
n
53
GLU
69
A
LYS
70
n
54
LYS
70
A
GLN
71
n
55
GLN
71
A
GLN
72
n
56
GLN
72
A
HIS
73
n
57
HIS
73
A
ILE
74
n
58
ILE
74
A
VAL
75
n
59
VAL
75
A
HIS
76
n
60
HIS
76
A
CYS
77
n
61
CYS
77
A
SER
78
n
62
SER
78
A
ASN
79
n
63
ASN
79
A
ASP
80
n
64
ASP
80
A
LEU
81
n
65
LEU
81
A
LEU
82
n
66
LEU
82
A
GLY
83
n
67
GLY
83
A
ASP
84
n
68
ASP
84
A
LEU
85
n
69
LEU
85
A
PHE
86
n
70
PHE
86
A
GLY
87
n
71
GLY
87
A
VAL
88
n
72
VAL
88
A
PRO
89
n
73
PRO
89
A
SER
90
n
74
SER
90
A
PHE
91
n
75
PHE
91
A
SER
92
n
76
SER
92
A
VAL
93
n
77
VAL
93
A
LYS
94
n
78
LYS
94
A
GLU
95
n
79
GLU
95
A
HIS
96
n
80
HIS
96
A
ARG
97
n
81
ARG
97
A
LYS
98
n
82
LYS
98
A
ILE
99
n
83
ILE
99
A
TYR
100
n
84
TYR
100
A
THR
101
n
85
THR
101
A
MET
102
n
86
MET
102
A
ILE
103
n
87
ILE
103
A
TYR
104
n
88
TYR
104
A
ARG
105
n
89
ARG
105
A
ASN
106
n
90
ASN
106
A
LEU
107
n
91
LEU
107
A
VAL
108
n
92
VAL
108
A
VAL
109
n
93
VAL
109
A
VAL
110
n
94
VAL
110
A
ASN
111
n
95
ASN
111
A
n
96
112
A
n
97
113
A
n
98
114
A
n
99
115
A
n
100
116
A
n
101
117
A
n
102
118
A
n
103
119
A
n
104
120
A
n
105
121
A
n
106
122
A
n
107
123
A
n
108
124
A
n
109
125
A
n
1
17
B
n
2
18
B
n
3
19
B
n
4
20
B
ALA
21
n
5
ALA
21
B
SER
22
n
6
SER
22
B
GLU
23
n
7
GLU
23
B
GLN
24
n
8
GLN
24
B
GLU
25
n
9
GLU
25
B
THR
26
n
10
THR
26
B
LEU
27
n
11
LEU
27
B
VAL
28
n
12
VAL
28
B
ARG
29
n
13
ARG
29
B
PRO
30
n
14
PRO
30
B
LYS
31
n
15
LYS
31
B
PRO
32
n
16
PRO
32
B
LEU
33
n
17
LEU
33
B
LEU
34
n
18
LEU
34
B
LEU
35
n
19
LEU
35
B
LYS
36
n
20
LYS
36
B
LEU
37
n
21
LEU
37
B
LEU
38
n
22
LEU
38
B
LYS
39
n
23
LYS
39
B
SER
40
n
24
SER
40
B
VAL
41
n
25
VAL
41
B
GLY
42
n
26
GLY
42
B
ALA
43
n
27
ALA
43
B
GLN
44
n
28
GLN
44
B
LYS
45
n
29
LYS
45
B
ASP
46
n
30
ASP
46
B
THR
47
n
31
THR
47
B
TYR
48
n
32
TYR
48
B
THR
49
n
33
THR
49
B
MET
50
n
34
MET
50
B
LYS
51
n
35
LYS
51
B
GLU
52
n
36
GLU
52
B
VAL
53
n
37
VAL
53
B
LEU
54
n
38
LEU
54
B
TYR
55
n
39
TYR
55
B
TYR
56
n
40
TYR
56
B
LEU
57
n
41
LEU
57
B
GLY
58
n
42
GLY
58
B
GLN
59
n
43
GLN
59
B
TYR
60
n
44
TYR
60
B
ILE
61
n
45
ILE
61
B
MET
62
n
46
MET
62
B
THR
63
n
47
THR
63
B
LYS
64
n
48
LYS
64
B
ARG
65
n
49
ARG
65
B
LEU
66
n
50
LEU
66
B
TYR
67
n
51
TYR
67
B
ASP
68
n
52
ASP
68
B
GLU
69
n
53
GLU
69
B
LYS
70
n
54
LYS
70
B
GLN
71
n
55
GLN
71
B
GLN
72
n
56
GLN
72
B
HIS
73
n
57
HIS
73
B
ILE
74
n
58
ILE
74
B
VAL
75
n
59
VAL
75
B
HIS
76
n
60
HIS
76
B
CYS
77
n
61
CYS
77
B
SER
78
n
62
SER
78
B
ASN
79
n
63
ASN
79
B
ASP
80
n
64
ASP
80
B
LEU
81
n
65
LEU
81
B
LEU
82
n
66
LEU
82
B
GLY
83
n
67
GLY
83
B
ASP
84
n
68
ASP
84
B
LEU
85
n
69
LEU
85
B
PHE
86
n
70
PHE
86
B
GLY
87
n
71
GLY
87
B
VAL
88
n
72
VAL
88
B
PRO
89
n
73
PRO
89
B
SER
90
n
74
SER
90
B
PHE
91
n
75
PHE
91
B
SER
92
n
76
SER
92
B
VAL
93
n
77
VAL
93
B
LYS
94
n
78
LYS
94
B
GLU
95
n
79
GLU
95
B
HIS
96
n
80
HIS
96
B
ARG
97
n
81
ARG
97
B
LYS
98
n
82
LYS
98
B
ILE
99
n
83
ILE
99
B
TYR
100
n
84
TYR
100
B
THR
101
n
85
THR
101
B
MET
102
n
86
MET
102
B
ILE
103
n
87
ILE
103
B
TYR
104
n
88
TYR
104
B
ARG
105
n
89
ARG
105
B
ASN
106
n
90
ASN
106
B
LEU
107
n
91
LEU
107
B
VAL
108
n
92
VAL
108
B
VAL
109
n
93
VAL
109
B
VAL
110
n
94
VAL
110
B
ASN
111
n
95
ASN
111
B
n
96
112
B
n
97
113
B
n
98
114
B
n
99
115
B
n
100
116
B
n
101
117
B
n
102
118
B
n
103
119
B
n
104
120
B
n
105
121
B
n
106
122
B
n
107
123
B
n
108
124
B
n
109
125
B
1.2653
0.3328
-0.0839
2.7784
-0.6563
3.2921
-0.0212
0.1832
-0.0508
0.3129
-0.0027
-0.1799
-0.5384
-0.0480
0.0239
0.4413
0.0635
-0.2154
-0.3618
-0.0197
-0.2861
refined
15.9732
4.9767
25.0759
X-RAY DIFFRACTION
2.2210
1.1653
-0.8872
3.3983
-1.1149
4.0273
0.0026
0.0067
0.0693
0.4490
0.0022
-0.1306
-0.4216
-0.0754
-0.0049
0.0144
0.0589
-0.0584
-0.0386
-0.0132
-0.0855
refined
8.0633
-4.8812
7.6067
X-RAY DIFFRACTION
A
26
A
111
X-RAY DIFFRACTION
1
{ A|26 - A|111 A|1001 - A|1001 }
A
1001
A
1001
X-RAY DIFFRACTION
1
{ A|26 - A|111 A|1001 - A|1001 }
B
21
B
111
X-RAY DIFFRACTION
2
{ B|21 - B|111 B|1001 - B|1001 }
B
1001
B
1001
X-RAY DIFFRACTION
2
{ B|21 - B|111 B|1001 - B|1001 }
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
2
dimeric
1340
-2
10070
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
48
A
O
TYR
32
A
N
VAL
28
A
N
VAL
12
A
N
ARG
29
A
N
ARG
13
A
O
VAL
108
A
O
VAL
92
A
N
VAL
75
A
N
VAL
59
A
O
PHE
91
A
O
PHE
75
B
O
TYR
48
B
O
TYR
32
B
N
VAL
28
B
N
VAL
12
B
N
ARG
29
B
N
ARG
13
B
O
VAL
108
B
O
VAL
92
B
N
ASP
68
B
N
ASP
52
B
O
GLN
71
B
O
GLN
55
B
N
VAL
75
B
N
VAL
59
B
O
PHE
91
B
O
PHE
75
1
A
SER
17
A
SER
1
1
Y
1
A
GLN
18
A
GLN
2
1
Y
1
A
ILE
19
A
ILE
3
1
Y
1
A
PRO
20
A
PRO
4
1
Y
1
A
ALA
21
A
ALA
5
1
Y
1
A
SER
22
A
SER
6
1
Y
1
A
GLU
23
A
GLU
7
1
Y
1
A
GLN
24
A
GLN
8
1
Y
1
A
GLU
25
A
GLU
9
1
Y
1
A
GLN
112
A
GLN
96
1
Y
1
A
GLN
113
A
GLN
97
1
Y
1
A
GLU
114
A
GLU
98
1
Y
1
A
SER
115
A
SER
99
1
Y
1
A
SER
116
A
SER
100
1
Y
1
A
ASP
117
A
ASP
101
1
Y
1
A
SER
118
A
SER
102
1
Y
1
A
GLY
119
A
GLY
103
1
Y
1
A
THR
120
A
THR
104
1
Y
1
A
SER
121
A
SER
105
1
Y
1
A
VAL
122
A
VAL
106
1
Y
1
A
SER
123
A
SER
107
1
Y
1
A
GLU
124
A
GLU
108
1
Y
1
A
ASN
125
A
ASN
109
1
Y
1
B
SER
17
B
SER
1
1
Y
1
B
GLN
18
B
GLN
2
1
Y
1
B
ILE
19
B
ILE
3
1
Y
1
B
PRO
20
B
PRO
4
1
Y
1
B
GLN
112
B
GLN
96
1
Y
1
B
GLN
113
B
GLN
97
1
Y
1
B
GLU
114
B
GLU
98
1
Y
1
B
SER
115
B
SER
99
1
Y
1
B
SER
116
B
SER
100
1
Y
1
B
ASP
117
B
ASP
101
1
Y
1
B
SER
118
B
SER
102
1
Y
1
B
GLY
119
B
GLY
103
1
Y
1
B
THR
120
B
THR
104
1
Y
1
B
SER
121
B
SER
105
1
Y
1
B
VAL
122
B
VAL
106
1
Y
1
B
SER
123
B
SER
107
1
Y
1
B
GLU
124
B
GLU
108
1
Y
1
B
ASN
125
B
ASN
109
1
Y
1
B
LEU
66
-84.59
48.07
1
B
CYS
77
-141.09
22.11
62.56
-4.5459
0.0000
0.0000
10.3382
0.0000
-5.7923
0.9193
0.9161
0.2612
0.2284
0.2299
2.17
19.75
517
10921
4.73
94.51
0.301
RANDOM
1
THROUGHOUT
0.0
FOURIER SYNTHESIS
0.314
0.222
0.221
0.457
2.17
19.75
54
1612
100
0
1458
0.010
1594
HARMONIC
2.00
1.09
2161
HARMONIC
2.00
665
SINUSOIDAL
2.00
31
HARMONIC
2.00
219
HARMONIC
5.00
1594
HARMONIC
20.00
2.94
21.67
10
HARMONIC
0.00
187
SEMIHARMONIC
5.00
1817
SEMIHARMONIC
4.00
0.2963
0.2471
0.2495
2.38
125
2366
2491
6
5.02
94.51
50.22
2.15
20.0
5HMK
10960
0.077
1
14.3
4.3
95.7
1
refinement
BUSTER
2.11.5
data scaling
SCALEPACK
data extraction
PDB_EXTRACT
3.15
data reduction
HKL-2000
phasing
REFMAC
HDM2 in complex with a 3,3-Disubstituted Piperidine
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
LYS
31
A
LYS
15
HELX_P
A
SER
40
A
SER
24
1
AA1
10
A
MET
50
A
MET
34
HELX_P
A
ARG
65
A
ARG
49
1
AA2
16
A
ASP
80
A
ASP
64
HELX_P
A
GLY
87
A
GLY
71
1
AA3
8
A
GLU
95
A
GLU
79
HELX_P
A
ARG
105
A
ARG
89
1
AA4
11
B
LYS
31
B
LYS
15
HELX_P
B
SER
40
B
SER
24
1
AA5
10
B
MET
50
B
MET
34
HELX_P
B
LYS
64
B
LYS
48
1
AA6
15
B
ASP
80
B
ASP
64
HELX_P
B
GLY
87
B
GLY
71
1
AA7
8
B
GLU
95
B
GLU
79
HELX_P
B
ARG
105
B
ARG
89
1
AA8
11
ligase/ligase inhibitor
Oncology, E3 ubiquitin-protein ligase, p53/TP53, ligase-ligase inhibitor complex
MDM2_HUMAN
UNP
1
23
Q00987
Q00987-11
SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVNQQESSDSGTSVSEN
23
131
5HMK
17
125
Q00987
A
1
1
109
23
131
5HMK
17
125
Q00987
B
1
1
109
1
PHE
engineered mutation
TYR
55
5HMK
A
Q00987
UNP
61
39
1
TYR
engineered mutation
HIS
76
5HMK
A
Q00987
UNP
82
60
2
PHE
engineered mutation
TYR
55
5HMK
B
Q00987
UNP
61
39
2
TYR
engineered mutation
HIS
76
5HMK
B
Q00987
UNP
82
60
3
2
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
48
A
TYR
32
A
THR
49
A
THR
33
A
LEU
27
A
LEU
11
A
PRO
30
A
PRO
14
A
LEU
107
A
LEU
91
A
VAL
110
A
VAL
94
A
ILE
74
A
ILE
58
A
HIS
76
A
HIS
60
A
SER
90
A
SER
74
A
SER
92
A
SER
76
B
TYR
48
B
TYR
32
B
THR
49
B
THR
33
B
LEU
27
B
LEU
11
B
PRO
30
B
PRO
14
B
LEU
107
B
LEU
91
B
VAL
109
B
VAL
93
B
TYR
67
B
TYR
51
B
ASP
68
B
ASP
52
B
GLN
71
B
GLN
55
B
HIS
76
B
HIS
60
B
SER
90
B
SER
74
B
SER
92
B
SER
76
binding site for residue 62Q A 1001
A
62Q
1001
Software
14
binding site for residue 62Q B 1001
B
62Q
1001
Software
17
A
LEU
54
A
LEU
38
14
1_555
A
LEU
57
A
LEU
41
14
1_555
A
GLY
58
A
GLY
42
14
1_555
A
ILE
61
A
ILE
45
14
1_555
A
MET
62
A
MET
46
14
1_555
A
TYR
67
A
TYR
51
14
1_555
A
GLN
72
A
GLN
56
14
1_555
A
PHE
91
A
PHE
75
14
1_555
A
VAL
93
A
VAL
77
14
1_555
A
HIS
96
A
HIS
80
14
1_555
A
ILE
99
A
ILE
83
14
1_555
A
TYR
100
A
TYR
84
14
1_555
B
LYS
51
B
LYS
35
14
1_555
B
62Q
1001
D
62Q
14
1_555
A
LYS
51
A
LYS
35
17
1_555
A
GLU
52
A
GLU
36
17
1_555
A
TYR
55
A
TYR
39
17
1_555
A
62Q
1001
C
62Q
17
1_555
B
GLN
24
B
GLN
8
17
1_555
B
LEU
54
B
LEU
38
17
1_555
B
LEU
57
B
LEU
41
17
1_555
B
GLY
58
B
GLY
42
17
1_555
B
ILE
61
B
ILE
45
17
1_555
B
MET
62
B
MET
46
17
1_555
B
TYR
67
B
TYR
51
17
1_555
B
GLN
72
B
GLN
56
17
1_555
B
PHE
91
B
PHE
75
17
1_555
B
VAL
93
B
VAL
77
17
1_555
B
HIS
96
B
HIS
80
17
1_555
B
ILE
99
B
ILE
83
17
1_555
B
TYR
100
B
TYR
84
17
1_555
19
P 21 21 21