0.032373
0.000000
0.000000
0.000000
0.023132
0.000000
0.000000
0.000000
0.014090
0.00000
0.00000
0.00000
Sangwan, S.
Zhao, A.
Sawaya, M.R.
Eisenberg, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.000
90.000
90.000
30.890
43.230
70.970
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
C
N
4
N
O
N
5
N
O
N
6
N
H
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
O
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
S
C
N
19
N
C
N
20
N
C
N
21
N
C
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
N
N
37
S
C
N
38
N
C
N
39
N
O
N
40
N
C
N
41
N
C
N
42
N
C
N
43
N
C
N
44
N
O
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
C
N
65
N
C
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
O
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
S
C
N
116
N
C
N
117
N
O
N
118
N
C
Y
119
N
C
Y
120
N
C
Y
121
N
C
Y
122
N
N
Y
123
N
C
Y
124
N
C
Y
125
N
C
Y
126
N
C
Y
127
N
C
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
doub
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
Y
119
N
doub
Y
120
N
sing
Y
121
N
sing
N
122
N
sing
Y
123
N
doub
Y
124
N
sing
Y
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
N
129
N
sing
Y
130
N
doub
N
131
N
sing
Y
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
US
Proc. Natl. Acad. Sci. U.S.A.
PNASA6
0040
1091-6490
114
8770
8775
10.1073/pnas.1705091114
28760994
Atomic structure of a toxic, oligomeric segment of SOD1 linked to amyotrophic lateral sclerosis (ALS).
2017
10.2210/pdb5iiw/pdb
pdb_00005iiw
100
1
CCD
2012-12-09
ADSC QUANTUM 315
SINGLE WAVELENGTH
x-ray
1
0.9791
1.0
24-ID-E
APS
0.9791
SYNCHROTRON
APS BEAMLINE 24-ID-E
1217.523
Superoxide dismutase [Cu-Zn]
1.15.1.1
UNP Residues 29-39
P29K
8
syn
polymer
18.015
water
34
nat
water
Superoxide dismutase 1,hSod1
no
no
KVKVWGSIKGL
KVKVWGSIKGL
A,B,C,D,E,F,G,H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
1
2.43
49.43
VAPOR DIFFUSION, HANGING DROP
5
reservoir contained 13% PEG 6000, 0.2M Sodium Citrate
298
pdbx_audit_support
pdbx_struct_assembly_auth_evidence
citation
citation_author
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Author supporting evidence
Author supporting evidence
Data collection
Database references
Author supporting evidence
Data collection
Database references
1
0
2017-06-28
1
1
2017-09-20
1
2
2017-11-01
1
3
2019-01-09
1
4
2019-12-04
1
5
2024-03-06
_pdbx_audit_support.funding_organization
_citation.country
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United States
National Institutes of Health/National Institute on Aging (NIH/NIA)
AG029430
United States
Department of Energy (DOE, United States)
5DLI contains the same peptide with potassium iodide soaked in for SIRAS phasing.
N
RCSB
Y
RCSB
2016-03-01
REL
REL
1
A
O
HOH
103
13.47
1
A
O
HOH
104
14.05
HOH
water
synthesized
9606
Human
Homo sapiens
sample
1
11
HOH
5
2
HOH
HOH
101
A
HOH
23
2
HOH
HOH
102
A
HOH
24
2
HOH
HOH
103
A
HOH
15
2
HOH
HOH
104
A
HOH
4
2
HOH
HOH
101
B
HOH
27
2
HOH
HOH
102
B
HOH
6
2
HOH
HOH
101
C
HOH
33
2
HOH
HOH
102
C
HOH
16
2
HOH
HOH
103
C
HOH
11
2
HOH
HOH
104
C
HOH
31
2
HOH
HOH
105
C
HOH
22
2
HOH
HOH
106
C
HOH
26
2
HOH
HOH
107
C
HOH
13
2
HOH
HOH
101
D
HOH
32
2
HOH
HOH
102
D
HOH
1
2
HOH
HOH
103
D
HOH
10
2
HOH
HOH
104
D
HOH
8
2
HOH
HOH
101
E
HOH
28
2
HOH
HOH
102
E
HOH
19
2
HOH
HOH
103
E
HOH
29
2
HOH
HOH
104
E
HOH
12
2
HOH
HOH
101
F
HOH
25
2
HOH
HOH
102
F
HOH
35
2
HOH
HOH
103
F
HOH
3
2
HOH
HOH
104
F
HOH
2
2
HOH
HOH
101
G
HOH
30
2
HOH
HOH
102
G
HOH
17
2
HOH
HOH
103
G
HOH
34
2
HOH
HOH
104
G
HOH
7
2
HOH
HOH
101
H
HOH
14
2
HOH
HOH
102
H
HOH
9
2
HOH
HOH
103
H
HOH
21
2
HOH
HOH
104
H
HOH
18
2
HOH
HOH
105
H
LYS
28
n
1
LYS
28
A
VAL
29
n
2
VAL
29
A
LYS
30
n
3
LYS
30
A
VAL
31
n
4
VAL
31
A
TRP
32
n
5
TRP
32
A
GLY
33
n
6
GLY
33
A
SER
34
n
7
SER
34
A
ILE
35
n
8
ILE
35
A
LYS
36
n
9
LYS
36
A
GLY
37
n
10
GLY
37
A
LEU
38
n
11
LEU
38
A
LYS
28
n
1
LYS
28
B
VAL
29
n
2
VAL
29
B
LYS
30
n
3
LYS
30
B
VAL
31
n
4
VAL
31
B
TRP
32
n
5
TRP
32
B
GLY
33
n
6
GLY
33
B
SER
34
n
7
SER
34
B
ILE
35
n
8
ILE
35
B
LYS
36
n
9
LYS
36
B
GLY
37
n
10
GLY
37
B
LEU
38
n
11
LEU
38
B
LYS
28
n
1
LYS
28
C
VAL
29
n
2
VAL
29
C
LYS
30
n
3
LYS
30
C
VAL
31
n
4
VAL
31
C
TRP
32
n
5
TRP
32
C
GLY
33
n
6
GLY
33
C
SER
34
n
7
SER
34
C
ILE
35
n
8
ILE
35
C
LYS
36
n
9
LYS
36
C
GLY
37
n
10
GLY
37
C
LEU
38
n
11
LEU
38
C
LYS
28
n
1
LYS
28
D
VAL
29
n
2
VAL
29
D
LYS
30
n
3
LYS
30
D
VAL
31
n
4
VAL
31
D
TRP
32
n
5
TRP
32
D
GLY
33
n
6
GLY
33
D
SER
34
n
7
SER
34
D
ILE
35
n
8
ILE
35
D
LYS
36
n
9
LYS
36
D
GLY
37
n
10
GLY
37
D
LEU
38
n
11
LEU
38
D
LYS
28
n
1
LYS
28
E
VAL
29
n
2
VAL
29
E
LYS
30
n
3
LYS
30
E
VAL
31
n
4
VAL
31
E
TRP
32
n
5
TRP
32
E
GLY
33
n
6
GLY
33
E
SER
34
n
7
SER
34
E
ILE
35
n
8
ILE
35
E
LYS
36
n
9
LYS
36
E
GLY
37
n
10
GLY
37
E
LEU
38
n
11
LEU
38
E
LYS
28
n
1
LYS
28
F
VAL
29
n
2
VAL
29
F
LYS
30
n
3
LYS
30
F
VAL
31
n
4
VAL
31
F
TRP
32
n
5
TRP
32
F
GLY
33
n
6
GLY
33
F
SER
34
n
7
SER
34
F
ILE
35
n
8
ILE
35
F
LYS
36
n
9
LYS
36
F
GLY
37
n
10
GLY
37
F
LEU
38
n
11
LEU
38
F
LYS
28
n
1
LYS
28
G
VAL
29
n
2
VAL
29
G
LYS
30
n
3
LYS
30
G
VAL
31
n
4
VAL
31
G
TRP
32
n
5
TRP
32
G
GLY
33
n
6
GLY
33
G
SER
34
n
7
SER
34
G
ILE
35
n
8
ILE
35
G
LYS
36
n
9
LYS
36
G
GLY
37
n
10
GLY
37
G
LEU
38
n
11
LEU
38
G
LYS
28
n
1
LYS
28
H
VAL
29
n
2
VAL
29
H
LYS
30
n
3
LYS
30
H
VAL
31
n
4
VAL
31
H
TRP
32
n
5
TRP
32
H
GLY
33
n
6
GLY
33
H
SER
34
n
7
SER
34
H
ILE
35
n
8
ILE
35
H
LYS
36
n
9
LYS
36
H
GLY
37
n
10
GLY
37
H
LEU
38
n
11
LEU
38
H
0.6049
-0.0913
-1.8857
0.4556
-0.4244
6.0550
0.0373
-0.0516
0.0370
0.0213
-0.0155
0.0070
0.0420
0.0243
-0.0219
0.0281
-0.0011
-0.0236
0.0525
-0.0038
-0.1844
refined
9.3142
16.9063
31.6219
X-RAY DIFFRACTION
A
28
A
38
X-RAY DIFFRACTION
1
{ *|* }
B
28
B
38
X-RAY DIFFRACTION
1
{ *|* }
C
28
C
38
X-RAY DIFFRACTION
1
{ *|* }
D
28
D
38
X-RAY DIFFRACTION
1
{ *|* }
E
28
E
38
X-RAY DIFFRACTION
1
{ *|* }
F
28
F
38
X-RAY DIFFRACTION
1
{ *|* }
G
28
G
38
X-RAY DIFFRACTION
1
{ *|* }
H
28
H
38
X-RAY DIFFRACTION
1
{ *|* }
I
1
I
35
X-RAY DIFFRACTION
1
{ *|* }
author_defined_assembly
8
octameric
gel filtration
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
30
A
N
LYS
3
B
O
TRP
32
B
O
TRP
5
B
N
VAL
29
B
N
VAL
2
C
O
ILE
35
C
O
ILE
8
C
N
TRP
32
C
N
TRP
5
D
O
LYS
30
D
O
LYS
3
D
N
GLY
33
D
N
GLY
6
E
O
VAL
31
E
O
VAL
4
E
N
TRP
32
E
N
TRP
5
F
O
LYS
30
F
O
LYS
3
F
N
VAL
31
F
N
VAL
4
G
O
GLY
33
G
O
GLY
6
G
N
LYS
30
G
N
LYS
3
H
O
TRP
32
H
O
TRP
5
96.390
34.9000
18.960
-1.7249
0.0000
0.0000
5.8236
0.0000
-4.0986
0.9272
0.9543
0.2524
0.2394
0.2401
2.0000
35.4900
336
6690
5.0200
97.7900
0.2100
RANDOM
1
THROUGHOUT
0.000
SIRAS
0.2190
0.1690
0.1670
0.256
2.0000
35.4900
34
722
46.35
0
0
688
88
248
SINUSOIDAL
2.000
8
HARMONIC
2.000
88
HARMONIC
5.000
696
HARMONIC
20.000
80
SEMIHARMONIC
5.000
923
SEMIHARMONIC
4.000
0.010
696
HARMONIC
2.000
0.910
920
HARMONIC
2.000
2.610
15.230
0.2214
0.2043
0.2051
2.2400
93
1769
1862
5
4.9900
97.7900
30.330
2.000
35.49
5IIW
6691
-3.000
0.992
0.122
1
9.340
5.1
97.800
0.593
2.000
2.150
3.130
1
5.23
97.700
0.398
2.150
2.320
4.480
1
98.400
0.317
2.320
2.540
5.500
1
97.100
0.204
2.540
2.830
8.800
1
97.300
0.135
2.830
3.260
12.520
1
96.600
0.088
3.260
3.960
17.690
1
99.300
0.066
3.960
5.470
20.440
1
99.300
0.050
5.470
35.49
16.660
1
96.300
data scaling
XSCALE
phasing
SHELX
refinement
BUSTER-TNT
data extraction
PDB_EXTRACT
3.20
data reduction
XDS
amyloid-related oligomer
Corkscrew assembly of SOD1 residues 28-38 without potassium iodide
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
Author states that the biological assembly is variable beta-sheet according to gel filtration. Asymmetric unit is one way of representing the variable biological assembly.
UNKNOWN FUNCTION
amyloid-related oligomer, UNKNOWN FUNCTION
SODC_HUMAN
UNP
1
29
P00441
PVKVWGSIKGL
29
39
5IIW
28
38
P00441
A
1
1
11
29
39
5IIW
28
38
P00441
B
1
1
11
29
39
5IIW
28
38
P00441
C
1
1
11
29
39
5IIW
28
38
P00441
D
1
1
11
29
39
5IIW
28
38
P00441
E
1
1
11
29
39
5IIW
28
38
P00441
F
1
1
11
29
39
5IIW
28
38
P00441
G
1
1
11
29
39
5IIW
28
38
P00441
H
1
1
11
1
PRO
engineered mutation
LYS
28
5IIW
A
P00441
UNP
29
1
2
PRO
engineered mutation
LYS
28
5IIW
B
P00441
UNP
29
1
3
PRO
engineered mutation
LYS
28
5IIW
C
P00441
UNP
29
1
4
PRO
engineered mutation
LYS
28
5IIW
D
P00441
UNP
29
1
5
PRO
engineered mutation
LYS
28
5IIW
E
P00441
UNP
29
1
6
PRO
engineered mutation
LYS
28
5IIW
F
P00441
UNP
29
1
7
PRO
engineered mutation
LYS
28
5IIW
G
P00441
UNP
29
1
8
PRO
engineered mutation
LYS
28
5IIW
H
P00441
UNP
29
1
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
29
A
VAL
2
A
GLY
33
A
GLY
6
B
VAL
29
B
VAL
2
B
SER
34
B
SER
7
C
VAL
29
C
VAL
2
C
ILE
35
C
ILE
8
D
VAL
29
D
VAL
2
D
SER
34
D
SER
7
E
VAL
29
E
VAL
2
E
ILE
35
E
ILE
8
F
VAL
29
F
VAL
2
F
SER
34
F
SER
7
G
VAL
29
G
VAL
2
G
SER
34
G
SER
7
H
VAL
29
H
VAL
2
H
GLY
33
H
GLY
6
19
P 21 21 21