0.032373 0.000000 0.000000 0.000000 0.023132 0.000000 0.000000 0.000000 0.014090 0.00000 0.00000 0.00000 Sangwan, S. Zhao, A. Sawaya, M.R. Eisenberg, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 32 90.000 90.000 90.000 30.890 43.230 70.970 C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N C N 4 N O N 5 N O N 6 N H N 7 N H N 8 N H N 9 N H N 10 N H N 11 N O N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 S C N 19 N C N 20 N C N 21 N C N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N N N 37 S C N 38 N C N 39 N O N 40 N C N 41 N C N 42 N C N 43 N C N 44 N O N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N C N 65 N C N 66 N N N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N N N 84 S C N 85 N C N 86 N O N 87 N C N 88 N C N 89 N C N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N N N 101 S C N 102 N C N 103 N O N 104 N C N 105 N O N 106 N O N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 S C N 116 N C N 117 N O N 118 N C Y 119 N C Y 120 N C Y 121 N C Y 122 N N Y 123 N C Y 124 N C Y 125 N C Y 126 N C Y 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 N C N 146 N C N 147 N C N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N doub N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing Y 119 N doub Y 120 N sing Y 121 N sing N 122 N sing Y 123 N doub Y 124 N sing Y 125 N sing N 126 N sing Y 127 N sing Y 128 N doub N 129 N sing Y 130 N doub N 131 N sing Y 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing US Proc. Natl. Acad. Sci. U.S.A. PNASA6 0040 1091-6490 114 8770 8775 10.1073/pnas.1705091114 28760994 Atomic structure of a toxic, oligomeric segment of SOD1 linked to amyotrophic lateral sclerosis (ALS). 2017 10.2210/pdb5iiw/pdb pdb_00005iiw 100 1 CCD 2012-12-09 ADSC QUANTUM 315 SINGLE WAVELENGTH x-ray 1 0.9791 1.0 24-ID-E APS 0.9791 SYNCHROTRON APS BEAMLINE 24-ID-E 1217.523 Superoxide dismutase [Cu-Zn] 1.15.1.1 UNP Residues 29-39 P29K 8 syn polymer 18.015 water 34 nat water Superoxide dismutase 1,hSod1 no no KVKVWGSIKGL KVKVWGSIKGL A,B,C,D,E,F,G,H polypeptide(L) n n n n n n n n n n n 1 2.43 49.43 VAPOR DIFFUSION, HANGING DROP 5 reservoir contained 13% PEG 6000, 0.2M Sodium Citrate 298 pdbx_audit_support pdbx_struct_assembly_auth_evidence citation citation_author pdbx_audit_support chem_comp_atom chem_comp_bond database_2 repository Initial release Author supporting evidence Author supporting evidence Data collection Database references Author supporting evidence Data collection Database references 1 0 2017-06-28 1 1 2017-09-20 1 2 2017-11-01 1 3 2019-01-09 1 4 2019-12-04 1 5 2024-03-06 _pdbx_audit_support.funding_organization _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession United States National Institutes of Health/National Institute on Aging (NIH/NIA) AG029430 United States Department of Energy (DOE, United States) 5DLI contains the same peptide with potassium iodide soaked in for SIRAS phasing. N RCSB Y RCSB 2016-03-01 REL REL 1 A O HOH 103 13.47 1 A O HOH 104 14.05 HOH water synthesized 9606 Human Homo sapiens sample 1 11 HOH 5 2 HOH HOH 101 A HOH 23 2 HOH HOH 102 A HOH 24 2 HOH HOH 103 A HOH 15 2 HOH HOH 104 A HOH 4 2 HOH HOH 101 B HOH 27 2 HOH HOH 102 B HOH 6 2 HOH HOH 101 C HOH 33 2 HOH HOH 102 C HOH 16 2 HOH HOH 103 C HOH 11 2 HOH HOH 104 C HOH 31 2 HOH HOH 105 C HOH 22 2 HOH HOH 106 C HOH 26 2 HOH HOH 107 C HOH 13 2 HOH HOH 101 D HOH 32 2 HOH HOH 102 D HOH 1 2 HOH HOH 103 D HOH 10 2 HOH HOH 104 D HOH 8 2 HOH HOH 101 E HOH 28 2 HOH HOH 102 E HOH 19 2 HOH HOH 103 E HOH 29 2 HOH HOH 104 E HOH 12 2 HOH HOH 101 F HOH 25 2 HOH HOH 102 F HOH 35 2 HOH HOH 103 F HOH 3 2 HOH HOH 104 F HOH 2 2 HOH HOH 101 G HOH 30 2 HOH HOH 102 G HOH 17 2 HOH HOH 103 G HOH 34 2 HOH HOH 104 G HOH 7 2 HOH HOH 101 H HOH 14 2 HOH HOH 102 H HOH 9 2 HOH HOH 103 H HOH 21 2 HOH HOH 104 H HOH 18 2 HOH HOH 105 H LYS 28 n 1 LYS 28 A VAL 29 n 2 VAL 29 A LYS 30 n 3 LYS 30 A VAL 31 n 4 VAL 31 A TRP 32 n 5 TRP 32 A GLY 33 n 6 GLY 33 A SER 34 n 7 SER 34 A ILE 35 n 8 ILE 35 A LYS 36 n 9 LYS 36 A GLY 37 n 10 GLY 37 A LEU 38 n 11 LEU 38 A LYS 28 n 1 LYS 28 B VAL 29 n 2 VAL 29 B LYS 30 n 3 LYS 30 B VAL 31 n 4 VAL 31 B TRP 32 n 5 TRP 32 B GLY 33 n 6 GLY 33 B SER 34 n 7 SER 34 B ILE 35 n 8 ILE 35 B LYS 36 n 9 LYS 36 B GLY 37 n 10 GLY 37 B LEU 38 n 11 LEU 38 B LYS 28 n 1 LYS 28 C VAL 29 n 2 VAL 29 C LYS 30 n 3 LYS 30 C VAL 31 n 4 VAL 31 C TRP 32 n 5 TRP 32 C GLY 33 n 6 GLY 33 C SER 34 n 7 SER 34 C ILE 35 n 8 ILE 35 C LYS 36 n 9 LYS 36 C GLY 37 n 10 GLY 37 C LEU 38 n 11 LEU 38 C LYS 28 n 1 LYS 28 D VAL 29 n 2 VAL 29 D LYS 30 n 3 LYS 30 D VAL 31 n 4 VAL 31 D TRP 32 n 5 TRP 32 D GLY 33 n 6 GLY 33 D SER 34 n 7 SER 34 D ILE 35 n 8 ILE 35 D LYS 36 n 9 LYS 36 D GLY 37 n 10 GLY 37 D LEU 38 n 11 LEU 38 D LYS 28 n 1 LYS 28 E VAL 29 n 2 VAL 29 E LYS 30 n 3 LYS 30 E VAL 31 n 4 VAL 31 E TRP 32 n 5 TRP 32 E GLY 33 n 6 GLY 33 E SER 34 n 7 SER 34 E ILE 35 n 8 ILE 35 E LYS 36 n 9 LYS 36 E GLY 37 n 10 GLY 37 E LEU 38 n 11 LEU 38 E LYS 28 n 1 LYS 28 F VAL 29 n 2 VAL 29 F LYS 30 n 3 LYS 30 F VAL 31 n 4 VAL 31 F TRP 32 n 5 TRP 32 F GLY 33 n 6 GLY 33 F SER 34 n 7 SER 34 F ILE 35 n 8 ILE 35 F LYS 36 n 9 LYS 36 F GLY 37 n 10 GLY 37 F LEU 38 n 11 LEU 38 F LYS 28 n 1 LYS 28 G VAL 29 n 2 VAL 29 G LYS 30 n 3 LYS 30 G VAL 31 n 4 VAL 31 G TRP 32 n 5 TRP 32 G GLY 33 n 6 GLY 33 G SER 34 n 7 SER 34 G ILE 35 n 8 ILE 35 G LYS 36 n 9 LYS 36 G GLY 37 n 10 GLY 37 G LEU 38 n 11 LEU 38 G LYS 28 n 1 LYS 28 H VAL 29 n 2 VAL 29 H LYS 30 n 3 LYS 30 H VAL 31 n 4 VAL 31 H TRP 32 n 5 TRP 32 H GLY 33 n 6 GLY 33 H SER 34 n 7 SER 34 H ILE 35 n 8 ILE 35 H LYS 36 n 9 LYS 36 H GLY 37 n 10 GLY 37 H LEU 38 n 11 LEU 38 H 0.6049 -0.0913 -1.8857 0.4556 -0.4244 6.0550 0.0373 -0.0516 0.0370 0.0213 -0.0155 0.0070 0.0420 0.0243 -0.0219 0.0281 -0.0011 -0.0236 0.0525 -0.0038 -0.1844 refined 9.3142 16.9063 31.6219 X-RAY DIFFRACTION A 28 A 38 X-RAY DIFFRACTION 1 { *|* } B 28 B 38 X-RAY DIFFRACTION 1 { *|* } C 28 C 38 X-RAY DIFFRACTION 1 { *|* } D 28 D 38 X-RAY DIFFRACTION 1 { *|* } E 28 E 38 X-RAY DIFFRACTION 1 { *|* } F 28 F 38 X-RAY DIFFRACTION 1 { *|* } G 28 G 38 X-RAY DIFFRACTION 1 { *|* } H 28 H 38 X-RAY DIFFRACTION 1 { *|* } I 1 I 35 X-RAY DIFFRACTION 1 { *|* } author_defined_assembly 8 octameric gel filtration 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 30 A N LYS 3 B O TRP 32 B O TRP 5 B N VAL 29 B N VAL 2 C O ILE 35 C O ILE 8 C N TRP 32 C N TRP 5 D O LYS 30 D O LYS 3 D N GLY 33 D N GLY 6 E O VAL 31 E O VAL 4 E N TRP 32 E N TRP 5 F O LYS 30 F O LYS 3 F N VAL 31 F N VAL 4 G O GLY 33 G O GLY 6 G N LYS 30 G N LYS 3 H O TRP 32 H O TRP 5 96.390 34.9000 18.960 -1.7249 0.0000 0.0000 5.8236 0.0000 -4.0986 0.9272 0.9543 0.2524 0.2394 0.2401 2.0000 35.4900 336 6690 5.0200 97.7900 0.2100 RANDOM 1 THROUGHOUT 0.000 SIRAS 0.2190 0.1690 0.1670 0.256 2.0000 35.4900 34 722 46.35 0 0 688 88 248 SINUSOIDAL 2.000 8 HARMONIC 2.000 88 HARMONIC 5.000 696 HARMONIC 20.000 80 SEMIHARMONIC 5.000 923 SEMIHARMONIC 4.000 0.010 696 HARMONIC 2.000 0.910 920 HARMONIC 2.000 2.610 15.230 0.2214 0.2043 0.2051 2.2400 93 1769 1862 5 4.9900 97.7900 30.330 2.000 35.49 5IIW 6691 -3.000 0.992 0.122 1 9.340 5.1 97.800 0.593 2.000 2.150 3.130 1 5.23 97.700 0.398 2.150 2.320 4.480 1 98.400 0.317 2.320 2.540 5.500 1 97.100 0.204 2.540 2.830 8.800 1 97.300 0.135 2.830 3.260 12.520 1 96.600 0.088 3.260 3.960 17.690 1 99.300 0.066 3.960 5.470 20.440 1 99.300 0.050 5.470 35.49 16.660 1 96.300 data scaling XSCALE phasing SHELX refinement BUSTER-TNT data extraction PDB_EXTRACT 3.20 data reduction XDS amyloid-related oligomer Corkscrew assembly of SOD1 residues 28-38 without potassium iodide 1 N N 1 N N 1 N N 1 N N 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N Author states that the biological assembly is variable beta-sheet according to gel filtration. Asymmetric unit is one way of representing the variable biological assembly. UNKNOWN FUNCTION amyloid-related oligomer, UNKNOWN FUNCTION SODC_HUMAN UNP 1 29 P00441 PVKVWGSIKGL 29 39 5IIW 28 38 P00441 A 1 1 11 29 39 5IIW 28 38 P00441 B 1 1 11 29 39 5IIW 28 38 P00441 C 1 1 11 29 39 5IIW 28 38 P00441 D 1 1 11 29 39 5IIW 28 38 P00441 E 1 1 11 29 39 5IIW 28 38 P00441 F 1 1 11 29 39 5IIW 28 38 P00441 G 1 1 11 29 39 5IIW 28 38 P00441 H 1 1 11 1 PRO engineered mutation LYS 28 5IIW A P00441 UNP 29 1 2 PRO engineered mutation LYS 28 5IIW B P00441 UNP 29 1 3 PRO engineered mutation LYS 28 5IIW C P00441 UNP 29 1 4 PRO engineered mutation LYS 28 5IIW D P00441 UNP 29 1 5 PRO engineered mutation LYS 28 5IIW E P00441 UNP 29 1 6 PRO engineered mutation LYS 28 5IIW F P00441 UNP 29 1 7 PRO engineered mutation LYS 28 5IIW G P00441 UNP 29 1 8 PRO engineered mutation LYS 28 5IIW H P00441 UNP 29 1 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 29 A VAL 2 A GLY 33 A GLY 6 B VAL 29 B VAL 2 B SER 34 B SER 7 C VAL 29 C VAL 2 C ILE 35 C ILE 8 D VAL 29 D VAL 2 D SER 34 D SER 7 E VAL 29 E VAL 2 E ILE 35 E ILE 8 F VAL 29 F VAL 2 F SER 34 F SER 7 G VAL 29 G VAL 2 G SER 34 G SER 7 H VAL 29 H VAL 2 H GLY 33 H GLY 6 19 P 21 21 21