0.029143 0.000000 0.000000 -0.000000 0.018122 0.000000 0.000000 -0.000000 0.007054 0.000000 0.000000 0.000000 Zak, K.M. Grudnik, P. Guzik, K. Zieba, B.J. Musielak, B. Doemling, P. Dubin, G. Holak, T.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 34.313 55.182 141.773 C27 H28 Br N O3 494.420 (2R)-1-({3-bromo-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)piperidine-2-carboxylic acid non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N BR Y 2 N C Y 3 N C Y 4 N C N 5 N C N 6 N N N 7 R C N 8 N C N 9 N O N 10 N O N 11 N C N 12 N C N 13 N C N 14 N C Y 15 N C Y 16 N C Y 17 N C N 18 N O N 19 N C Y 20 N C Y 21 N C Y 22 N C Y 23 N C Y 24 N C Y 25 N C N 26 N C Y 27 N C Y 28 N C Y 29 N C Y 30 N C Y 31 N C Y 32 N C N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N N N 62 S C N 63 N C N 64 N O N 65 N C N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N N N 82 N C N 83 N N N 84 N N N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N N N 102 S C N 103 N C N 104 N O N 105 N C N 106 N C N 107 N O N 108 N N N 109 N O N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N O N 125 N O N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N N N 135 R C N 136 N C N 137 N O N 138 N C N 139 N S N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 N C N 153 N C N 154 N C N 155 N O N 156 N N N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N N N 169 S C N 170 N C N 171 N O N 172 N C N 173 N C N 174 N C N 175 N O N 176 N O N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N N N 188 N C N 189 N C N 190 N O N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 S C N 199 N C N 200 N O N 201 N C Y 202 N C Y 203 N N Y 204 N C Y 205 N C Y 206 N N N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N O N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 S C N 226 N C N 227 N C N 228 N C N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 N C N 248 N C N 249 N C N 250 N C N 251 N O N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N N N 266 S C N 267 N C N 268 N O N 269 N C N 270 N C N 271 N C N 272 N C N 273 N N N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N S N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 N C N 338 N C N 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C N 355 N O N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N N N 365 S C N 366 N C N 367 N O N 368 R C N 369 N O N 370 N C N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N N Y 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 N C Y 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C N 419 N O N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C N 437 N C N 438 N C N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 1 N sing N 2 N sing N 3 N sing N 4 N doub N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing Y 11 N doub Y 12 N sing N 13 N sing Y 14 N sing Y 15 N doub N 16 N sing N 17 N sing Y 18 N doub Y 19 N sing N 20 N sing N 21 N sing Y 22 N doub Y 23 N sing Y 24 N sing Y 25 N doub Y 26 N sing Y 27 N doub N 28 N sing Y 29 N doub Y 30 N sing Y 31 N sing N 32 N sing Y 33 N doub Y 34 N doub Y 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing Y 203 N sing Y 204 N doub Y 205 N doub N 206 N sing Y 207 N sing N 208 N sing Y 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing Y 311 N doub Y 312 N sing Y 313 N sing N 314 N sing Y 315 N doub N 316 N sing Y 317 N doub N 318 N sing Y 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing Y 380 N doub Y 381 N sing Y 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N sing Y 389 N doub N 390 N sing Y 391 N doub N 392 N sing Y 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing Y 408 N doub Y 409 N sing Y 410 N sing N 411 N sing Y 412 N doub N 413 N sing Y 414 N doub N 415 N sing Y 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N doub N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing US Oncotarget 1949-2553 7 30323 30335 10.18632/oncotarget.8730 27083005 Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1). 2016 10.2210/pdb5j8o/pdb pdb_00005j8o GLU A 60 HAS WRONG CHIRALITY AT ATOM CA 100 1 PIXEL 2015-08-21 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 0.918409 1.0 14.1 BESSY 0.918409 SYNCHROTRON BESSY BEAMLINE 14.1 14126.172 Programmed cell death 1 ligand 1 2 man polymer 494.420 (2R)-1-({3-bromo-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)piperidine-2-carboxylic acid 1 syn non-polymer 18.015 water 30 nat water Programmed death ligand 1,B7 homolog 1,B7-H1 no no AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNA ALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYAAALEHH AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNA ALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYAAALEHH A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 124 CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.38 48.22 VAPOR DIFFUSION, SITTING DROP 8.0 0.2 M ammonium formate and 20% (w/v) PEG 3350 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Data collection Database references Refinement description 1 0 2016-04-27 1 1 2016-09-14 1 2 2024-01-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession Poland European Community Framework Programme Marie Curie FP7-Reintegration-Grant Poland National Science Centre UMO-2012/06/A/ST5/00224 Poland National Science Centre UMO-2014/12/W/NZ1/00457 Poland National Science Centre UMO-2011/01/D/NZ1/01169 Poland National Science Centre UMO-2012/07/E/NZ1/01907 Poland European Union structural funds POIG.02.01.00-12-064/08 Poland European Union structural funds POIG.02.01.00-12-167/08 N RCSB Y PDBE 2016-04-08 REL REL 6GZ (2R)-1-({3-bromo-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)piperidine-2-carboxylic acid HOH water 5C3T PDB experimental model 8 1 2 6GZ 6GZ 201 A HOH 6 3 HOH HOH 301 A HOH 2 3 HOH HOH 302 A HOH 30 3 HOH HOH 303 A HOH 43 3 HOH HOH 304 A HOH 18 3 HOH HOH 305 A HOH 21 3 HOH HOH 306 A HOH 34 3 HOH HOH 307 A HOH 15 3 HOH HOH 308 A HOH 32 3 HOH HOH 309 A HOH 9 3 HOH HOH 310 A HOH 10 3 HOH HOH 311 A HOH 103 3 HOH HOH 312 A HOH 3 3 HOH HOH 201 B HOH 5 3 HOH HOH 202 B HOH 7 3 HOH HOH 203 B HOH 11 3 HOH HOH 204 B HOH 22 3 HOH HOH 205 B HOH 20 3 HOH HOH 206 B HOH 23 3 HOH HOH 207 B HOH 47 3 HOH HOH 208 B HOH 25 3 HOH HOH 209 B HOH 8 3 HOH HOH 210 B HOH 53 3 HOH HOH 211 B HOH 31 3 HOH HOH 212 B HOH 36 3 HOH HOH 213 B HOH 14 3 HOH HOH 214 B HOH 13 3 HOH HOH 215 B HOH 33 3 HOH HOH 216 B HOH 1 3 HOH HOH 217 B HOH 4 3 HOH HOH 218 B 2.180 2.180 43.540 43.540 Phaser MODE: MR_AUTO ALA 18 n 1 ALA 18 A PHE 19 n 2 PHE 19 A THR 20 n 3 THR 20 A VAL 21 n 4 VAL 21 A THR 22 n 5 THR 22 A VAL 23 n 6 VAL 23 A PRO 24 n 7 PRO 24 A LYS 25 n 8 LYS 25 A ASP 26 n 9 ASP 26 A LEU 27 n 10 LEU 27 A TYR 28 n 11 TYR 28 A VAL 29 n 12 VAL 29 A VAL 30 n 13 VAL 30 A GLU 31 n 14 GLU 31 A TYR 32 n 15 TYR 32 A GLY 33 n 16 GLY 33 A SER 34 n 17 SER 34 A ASN 35 n 18 ASN 35 A MET 36 n 19 MET 36 A THR 37 n 20 THR 37 A ILE 38 n 21 ILE 38 A GLU 39 n 22 GLU 39 A CYS 40 n 23 CYS 40 A LYS 41 n 24 LYS 41 A PHE 42 n 25 PHE 42 A PRO 43 n 26 PRO 43 A VAL 44 n 27 VAL 44 A GLU 45 n 28 GLU 45 A LYS 46 n 29 LYS 46 A GLU 47 n 30 GLN 47 A LEU 48 n 31 LEU 48 A ASP 49 n 32 ASP 49 A LEU 50 n 33 LEU 50 A ALA 51 n 34 ALA 51 A ALA 52 n 35 ALA 52 A LEU 53 n 36 LEU 53 A ILE 54 n 37 ILE 54 A VAL 55 n 38 VAL 55 A TYR 56 n 39 TYR 56 A TRP 57 n 40 TRP 57 A GLU 58 n 41 GLU 58 A MET 59 n 42 MET 59 A GLU 60 n 43 GLU 60 A ASP 61 n 44 ASP 61 A LYS 62 n 45 LYS 62 A ASN 63 n 46 ASN 63 A ILE 64 n 47 ILE 64 A ILE 65 n 48 ILE 65 A GLN 66 n 49 GLN 66 A PHE 67 n 50 PHE 67 A VAL 68 n 51 VAL 68 A HIS 69 n 52 HIS 69 A GLY 70 n 53 GLY 70 A GLU 71 n 54 GLU 71 A GLU 72 n 55 GLU 72 A ASP 73 n 56 ASP 73 A LEU 74 n 57 LEU 74 A LYS 75 n 58 LYS 75 A VAL 76 n 59 VAL 76 A GLN 77 n 60 GLN 77 A HIS 78 n 61 HIS 78 A SER 79 n 62 SER 79 A SER 80 n 63 SER 80 A TYR 81 n 64 TYR 81 A ARG 82 n 65 ARG 82 A GLN 83 n 66 GLN 83 A ARG 84 n 67 ARG 84 A ALA 85 n 68 ALA 85 A ARG 86 n 69 ARG 86 A LEU 87 n 70 LEU 87 A LEU 88 n 71 LEU 88 A LYS 89 n 72 LYS 89 A ASP 90 n 73 ASP 90 A GLN 91 n 74 GLN 91 A LEU 92 n 75 LEU 92 A SER 93 n 76 SER 93 A LEU 94 n 77 LEU 94 A GLY 95 n 78 GLY 95 A ASN 96 n 79 ASN 96 A ALA 97 n 80 ALA 97 A ALA 98 n 81 ALA 98 A LEU 99 n 82 LEU 99 A GLN 100 n 83 GLN 100 A ILE 101 n 84 ILE 101 A THR 102 n 85 THR 102 A ASP 103 n 86 ASP 103 A VAL 104 n 87 VAL 104 A LYS 105 n 88 LYS 105 A LEU 106 n 89 LEU 106 A GLN 107 n 90 GLN 107 A ASP 108 n 91 ASP 108 A ALA 109 n 92 ALA 109 A GLY 110 n 93 GLY 110 A VAL 111 n 94 VAL 111 A TYR 112 n 95 TYR 112 A ARG 113 n 96 ARG 113 A CYS 114 n 97 CYS 114 A MET 115 n 98 MET 115 A ILE 116 n 99 ILE 116 A SER 117 n 100 SER 117 A TYR 118 n 101 TYR 118 A GLY 119 n 102 GLY 119 A GLY 120 n 103 GLY 120 A ALA 121 n 104 ALA 121 A ASP 122 n 105 ASP 122 A TYR 123 n 106 TYR 123 A LYS 124 n 107 LYS 124 A ARG 125 n 108 ARG 125 A ILE 126 n 109 ILE 126 A THR 127 n 110 THR 127 A VAL 128 n 111 VAL 128 A LYS 129 n 112 LYS 129 A VAL 130 n 113 VAL 130 A ASN 131 n 114 ASN 131 A ALA 132 n 115 ALA 132 A PRO 133 n 116 PRO 133 A TYR 134 n 117 TYR 134 A ALA 135 n 118 ALA 135 A ALA 136 n 119 ALA 136 A ALA 137 n 120 ALA 137 A LEU 138 n 121 LEU 138 A GLU 139 n 122 GLU 139 A n 123 140 A n 124 141 A ALA 18 n 1 ALA 18 B PHE 19 n 2 PHE 19 B THR 20 n 3 THR 20 B VAL 21 n 4 VAL 21 B THR 22 n 5 THR 22 B VAL 23 n 6 VAL 23 B PRO 24 n 7 PRO 24 B LYS 25 n 8 LYS 25 B ASP 26 n 9 ASP 26 B LEU 27 n 10 LEU 27 B TYR 28 n 11 TYR 28 B VAL 29 n 12 VAL 29 B VAL 30 n 13 VAL 30 B GLU 31 n 14 GLU 31 B TYR 32 n 15 TYR 32 B GLY 33 n 16 GLY 33 B SER 34 n 17 SER 34 B ASN 35 n 18 ASN 35 B MET 36 n 19 MET 36 B THR 37 n 20 THR 37 B ILE 38 n 21 ILE 38 B GLU 39 n 22 GLU 39 B CYS 40 n 23 CYS 40 B LYS 41 n 24 LYS 41 B PHE 42 n 25 PHE 42 B PRO 43 n 26 PRO 43 B VAL 44 n 27 VAL 44 B GLU 45 n 28 GLU 45 B LYS 46 n 29 LYS 46 B GLU 47 n 30 GLN 47 B LEU 48 n 31 LEU 48 B ASP 49 n 32 ASP 49 B LEU 50 n 33 LEU 50 B ALA 51 n 34 ALA 51 B ALA 52 n 35 ALA 52 B LEU 53 n 36 LEU 53 B ILE 54 n 37 ILE 54 B VAL 55 n 38 VAL 55 B TYR 56 n 39 TYR 56 B TRP 57 n 40 TRP 57 B GLU 58 n 41 GLU 58 B MET 59 n 42 MET 59 B GLU 60 n 43 GLU 60 B ASP 61 n 44 ASP 61 B LYS 62 n 45 LYS 62 B ASN 63 n 46 ASN 63 B ILE 64 n 47 ILE 64 B ILE 65 n 48 ILE 65 B GLN 66 n 49 GLN 66 B PHE 67 n 50 PHE 67 B VAL 68 n 51 VAL 68 B HIS 69 n 52 HIS 69 B GLY 70 n 53 GLY 70 B GLU 71 n 54 GLU 71 B GLU 72 n 55 GLU 72 B ASP 73 n 56 ASP 73 B LEU 74 n 57 LEU 74 B LYS 75 n 58 LYS 75 B VAL 76 n 59 VAL 76 B GLN 77 n 60 GLN 77 B HIS 78 n 61 HIS 78 B SER 79 n 62 SER 79 B SER 80 n 63 SER 80 B TYR 81 n 64 TYR 81 B ARG 82 n 65 ARG 82 B GLN 83 n 66 GLN 83 B ARG 84 n 67 ARG 84 B ALA 85 n 68 ALA 85 B ARG 86 n 69 ARG 86 B LEU 87 n 70 LEU 87 B LEU 88 n 71 LEU 88 B LYS 89 n 72 LYS 89 B ASP 90 n 73 ASP 90 B GLN 91 n 74 GLN 91 B LEU 92 n 75 LEU 92 B SER 93 n 76 SER 93 B LEU 94 n 77 LEU 94 B GLY 95 n 78 GLY 95 B ASN 96 n 79 ASN 96 B ALA 97 n 80 ALA 97 B ALA 98 n 81 ALA 98 B LEU 99 n 82 LEU 99 B GLN 100 n 83 GLN 100 B ILE 101 n 84 ILE 101 B THR 102 n 85 THR 102 B ASP 103 n 86 ASP 103 B VAL 104 n 87 VAL 104 B LYS 105 n 88 LYS 105 B LEU 106 n 89 LEU 106 B GLN 107 n 90 GLN 107 B ASP 108 n 91 ASP 108 B ALA 109 n 92 ALA 109 B GLY 110 n 93 GLY 110 B VAL 111 n 94 VAL 111 B TYR 112 n 95 TYR 112 B ARG 113 n 96 ARG 113 B CYS 114 n 97 CYS 114 B MET 115 n 98 MET 115 B ILE 116 n 99 ILE 116 B SER 117 n 100 SER 117 B TYR 118 n 101 TYR 118 B GLY 119 n 102 GLY 119 B GLY 120 n 103 GLY 120 B ALA 121 n 104 ALA 121 B ASP 122 n 105 ASP 122 B TYR 123 n 106 TYR 123 B LYS 124 n 107 LYS 124 B ARG 125 n 108 ARG 125 B ILE 126 n 109 ILE 126 B THR 127 n 110 THR 127 B VAL 128 n 111 VAL 128 B LYS 129 n 112 LYS 129 B VAL 130 n 113 VAL 130 B ASN 131 n 114 ASN 131 B ALA 132 n 115 ALA 132 B PRO 133 n 116 PRO 133 B TYR 134 n 117 TYR 134 B ALA 135 n 118 ALA 135 B ALA 136 n 119 ALA 136 B ALA 137 n 120 ALA 137 B LEU 138 n 121 LEU 138 B GLU 139 n 122 GLU 139 B HIS 140 n 123 HIS 140 B HIS 141 n 124 HIS 141 B author_and_software_defined_assembly PISA 2 dimeric 1270 -2 12610 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 28 A N TYR 11 A O LYS 129 A O LYS 112 A O ILE 126 A O ILE 109 A N TYR 112 A N TYR 95 A O MET 115 A O MET 98 A N TYR 56 A N TYR 39 A N VAL 55 A N VAL 38 A O PHE 67 A O PHE 50 A N VAL 68 A N VAL 51 A O GLU 71 A O GLU 54 A N MET 36 A N MET 19 A O ILE 101 A O ILE 84 A O GLN 100 A O GLN 83 A N ARG 86 A N ARG 69 B N VAL 30 B N VAL 13 B O ASN 131 B O ASN 114 B O ASP 122 B O ASP 105 B N ILE 116 B N ILE 99 B O ARG 113 B O ARG 96 B N GLU 58 B N GLU 41 B N TRP 57 B N TRP 40 B O ILE 64 B O ILE 47 B N GLN 66 B N GLN 49 B O ASP 73 B O ASP 56 B N MET 36 B N MET 19 B O ILE 101 B O ILE 84 B O GLN 100 B O GLN 83 B N ARG 86 B N ARG 69 1 A CB GLU 45 A CB GLU 28 1 Y 1 A CG GLU 45 A CG GLU 28 1 Y 1 A CD GLU 45 A CD GLU 28 1 Y 1 A OE1 GLU 45 A OE1 GLU 28 1 Y 1 A OE2 GLU 45 A OE2 GLU 28 1 Y 1 A CG GLN 47 A CG GLN 30 1 Y 1 A CD GLN 47 A CD GLN 30 1 Y 1 A OE1 GLN 47 A OE1 GLN 30 1 Y 1 A NE2 GLN 47 A NE2 GLN 30 1 Y 1 A CG ARG 82 A CG ARG 65 1 Y 1 A CD ARG 82 A CD ARG 65 1 Y 1 A NE ARG 82 A NE ARG 65 1 Y 1 A CZ ARG 82 A CZ ARG 65 1 Y 1 A NH1 ARG 82 A NH1 ARG 65 1 Y 1 A NH2 ARG 82 A NH2 ARG 65 1 Y 1 A CG LYS 129 A CG LYS 112 1 Y 1 A CD LYS 129 A CD LYS 112 1 Y 1 A CE LYS 129 A CE LYS 112 1 Y 1 A NZ LYS 129 A NZ LYS 112 1 Y 1 B CB LYS 46 B CB LYS 29 1 Y 1 B CG LYS 46 B CG LYS 29 1 Y 1 B CD LYS 46 B CD LYS 29 1 Y 1 B CE LYS 46 B CE LYS 29 1 Y 1 B NZ LYS 46 B NZ LYS 29 1 Y 1 B CG GLN 47 B CG GLN 30 1 Y 1 B CD GLN 47 B CD GLN 30 1 Y 1 B OE1 GLN 47 B OE1 GLN 30 1 Y 1 B NE2 GLN 47 B NE2 GLN 30 1 Y 1 B CG GLU 71 B CG GLU 54 1 Y 1 B CD GLU 71 B CD GLU 54 1 Y 1 B OE1 GLU 71 B OE1 GLU 54 1 Y 1 B OE2 GLU 71 B OE2 GLU 54 1 Y 1 B CG LYS 75 B CG LYS 58 1 Y 1 B CD LYS 75 B CD LYS 58 1 Y 1 B CE LYS 75 B CE LYS 58 1 Y 1 B NZ LYS 75 B NZ LYS 58 1 Y 1 B CG ARG 82 B CG ARG 65 1 Y 1 B CD ARG 82 B CD ARG 65 1 Y 1 B NE ARG 82 B NE ARG 65 1 Y 1 B CZ ARG 82 B CZ ARG 65 1 Y 1 B NH1 ARG 82 B NH1 ARG 65 1 Y 1 B NH2 ARG 82 B NH2 ARG 65 1 Y 1 B CG ARG 86 B CG ARG 69 1 Y 1 B CD ARG 86 B CD ARG 69 1 Y 1 B NE ARG 86 B NE ARG 69 1 Y 1 B CZ ARG 86 B CZ ARG 69 1 Y 1 B NH1 ARG 86 B NH1 ARG 69 1 Y 1 B NH2 ARG 86 B NH2 ARG 69 1 Y 1 B CG LEU 88 B CG LEU 71 1 Y 1 B CD1 LEU 88 B CD1 LEU 71 1 Y 1 B CD2 LEU 88 B CD2 LEU 71 1 Y 1 B CG LYS 89 B CG LYS 72 1 Y 1 B CD LYS 89 B CD LYS 72 1 Y 1 B CE LYS 89 B CE LYS 72 1 Y 1 B NZ LYS 89 B NZ LYS 72 1 Y 1 B CG ASP 90 B CG ASP 73 1 Y 1 B OD1 ASP 90 B OD1 ASP 73 1 Y 1 B OD2 ASP 90 B OD2 ASP 73 1 Y 1 A HIS 140 A HIS 123 1 Y 1 A HIS 141 A HIS 124 1 Y 1 A CA GLU 60 WRONG HAND 1 B B GLU HIS 139 140 -45.54 1 -3.23 0.50 120.30 117.07 B B B NE CZ NH1 ARG ARG ARG 84 84 84 N 1 3.65 0.50 120.30 123.95 B B B NE CZ NH2 ARG ARG ARG 84 84 84 N 1 A B O O HOH HOH 302 216 1.96 1_555 2_565 1 A GLN 47 -33.75 127.99 1 A MET 59 -106.51 -61.37 1 A GLU 60 -74.41 -80.82 1 A ASP 61 79.57 -55.27 1 A TYR 118 -160.94 87.58 1 A LEU 138 -173.86 127.09 1 B GLU 45 -74.72 -126.35 1 B HIS 69 59.67 -126.95 1 B ASP 90 -28.45 -54.59 1 B TYR 118 -160.46 89.74 1 B LEU 138 -71.23 26.37 1 B GLU 139 -27.39 -40.08 88.700 44.1120 26.300 2.2300 0.0000 0.0000 2.3000 -0.0000 -4.5300 0.9270 0.8770 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.3052 0.2412 0.2445 2.3000 47.26 610 11974 4.8000 99.8400 10.2530 0.2500 0.3909 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.3910 0.2890 0.8000 0.8000 1.2000 5c3t 2.3000 47.26 30 1968 42.77 46.53 32 0 1906 246 0.014 0.019 1979 0.002 0.020 1870 1.878 1.975 2689 1.089 3.000 4280 8.030 5.000 244 35.254 24.884 86 17.240 15.000 322 29.198 15.000 7 0.214 0.200 305 0.007 0.020 2240 0.002 0.020 447 3.302 4.369 982 3.301 4.368 983 4.759 6.541 1224 0.4230 0.2670 2.3600 32 846 878 20 99.8900 2.3 47.26 5J8O 12626 0.093 1 12.4 6.8 99.9 0.465 1 data scaling Aimless phasing PHASER 2.5.6 refinement REFMAC 5.8.0103 data extraction PDB_EXTRACT 3.20 data reduction XDS phasing PHASER Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor 1 N N 1 N N 2 N N 3 N N 3 N N A ASP 49 A ASP 32 HELX_P A ALA 52 A ALA 35 5 AA1 4 A LEU 74 A LEU 57 HELX_P A GLN 77 A GLN 60 5 AA2 4 A HIS 78 A HIS 61 HELX_P A ARG 82 A ARG 65 5 AA3 5 A LEU 88 A LEU 71 HELX_P A SER 93 A SER 76 1 AA4 6 A LYS 105 A LYS 88 HELX_P A ALA 109 A ALA 92 5 AA5 5 B ASP 49 B ASP 32 HELX_P B LEU 53 B LEU 36 5 AA6 5 B HIS 78 B HIS 61 HELX_P B ARG 82 B ARG 65 5 AA7 5 B LYS 89 B LYS 72 HELX_P B GLY 95 B GLY 78 5 AA8 7 B LYS 105 B LYS 88 HELX_P B ALA 109 B ALA 92 5 AA9 5 B PRO 133 B PRO 116 HELX_P B LEU 138 B LEU 121 1 AB1 6 disulf 2.023 A CYS 40 A SG CYS 23 1_555 A CYS 114 A SG CYS 97 1_555 disulf 2.067 B CYS 40 B SG CYS 23 1_555 B CYS 114 B SG CYS 97 1_555 IMMUNE SYSTEM PD-L1, Programmed cell death 1 ligand 1, cell cycle, IMMUNE SYSTEM A GLU 60 A GLU 43 1 A ASP 61 A ASP 44 -25.16 B HIS 140 B HIS 123 1 B HIS 141 B HIS 124 13.75 PD1L1_HUMAN UNP 1 18 Q9NZQ7 AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNA ALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPY 18 134 5J8O 18 134 Q9NZQ7 A 1 1 117 18 134 5J8O 18 134 Q9NZQ7 B 1 1 117 1 expression tag ALA 135 5J8O A Q9NZQ7 UNP 118 1 expression tag ALA 136 5J8O A Q9NZQ7 UNP 119 1 expression tag ALA 137 5J8O A Q9NZQ7 UNP 120 1 expression tag LEU 138 5J8O A Q9NZQ7 UNP 121 1 expression tag GLU 139 5J8O A Q9NZQ7 UNP 122 1 expression tag HIS 140 5J8O A Q9NZQ7 UNP 123 1 expression tag HIS 141 5J8O A Q9NZQ7 UNP 124 2 expression tag ALA 135 5J8O B Q9NZQ7 UNP 118 2 expression tag ALA 136 5J8O B Q9NZQ7 UNP 119 2 expression tag ALA 137 5J8O B Q9NZQ7 UNP 120 2 expression tag LEU 138 5J8O B Q9NZQ7 UNP 121 2 expression tag GLU 139 5J8O B Q9NZQ7 UNP 122 2 expression tag HIS 140 5J8O B Q9NZQ7 UNP 123 2 expression tag HIS 141 5J8O B Q9NZQ7 UNP 124 6 3 6 3 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 27 A LEU 10 A GLU 31 A GLU 14 A ALA 121 A ALA 104 A ASN 131 A ASN 114 A GLY 110 A GLY 93 A SER 117 A SER 100 A ILE 54 A ILE 37 A GLU 58 A GLU 41 A ASN 63 A ASN 46 A VAL 68 A VAL 51 A GLU 71 A GLU 54 A GLU 72 A GLU 55 A MET 36 A MET 19 A LYS 41 A LYS 24 A ASN 96 A ASN 79 A ILE 101 A ILE 84 A ALA 85 A ALA 68 A LEU 87 A LEU 70 B LEU 27 B LEU 10 B GLU 31 B GLU 14 B ALA 121 B ALA 104 B ASN 131 B ASN 114 B GLY 110 B GLY 93 B SER 117 B SER 100 B ILE 54 B ILE 37 B MET 59 B MET 42 B LYS 62 B LYS 45 B VAL 68 B VAL 51 B GLU 71 B GLU 54 B ASP 73 B ASP 56 B MET 36 B MET 19 B ILE 38 B ILE 21 B LEU 99 B LEU 82 B ILE 101 B ILE 84 B ALA 85 B ALA 68 B LEU 87 B LEU 70 binding site for residue 6GZ A 201 A 6GZ 201 Software 8 A TYR 56 A TYR 39 8 1_555 A GLN 66 A GLN 49 8 1_555 A VAL 76 A VAL 59 8 1_555 A MET 115 A MET 98 8 1_555 B TYR 56 B TYR 39 8 1_555 B MET 115 B MET 98 8 1_555 B ALA 121 B ALA 104 8 1_555 B ASP 122 B ASP 105 8 1_555 18 P 2 21 21