0.024767
0.000000
0.003599
-0.000000
0.011016
0.000000
0.000000
-0.000000
0.024668
0.00000
0.00000
0.00000
Fotinou, C.
Rana, R.
Djordjevic, S.
Yelland, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
98.27
90.00
40.376
90.781
40.965
C15 H21 N5 O4
335.358
N-(benzenecarbonyl)glycyl-L-arginine
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
S
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
O
N
10
N
O
N
11
N
C
N
12
N
C
N
13
N
N
N
14
N
C
N
15
N
N
N
16
N
C
N
17
N
N
N
18
N
O
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
N
N
47
S
C
N
48
N
C
N
49
N
O
N
50
N
C
N
51
N
O
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
N
N
60
S
C
N
61
N
C
N
62
N
O
N
63
N
C
N
64
N
C
N
65
N
C
N
66
N
N
N
67
N
C
N
68
N
N
N
69
N
N
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
N
N
87
S
C
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
N
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
O
N
110
N
O
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
R
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
S
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
N
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
Y
187
N
C
Y
188
N
N
Y
189
N
C
Y
190
N
C
Y
191
N
N
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
S
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
S
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
R
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
N
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
1
N
doub
Y
2
N
doub
Y
3
N
sing
N
4
N
sing
N
5
N
sing
Y
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
Y
11
N
doub
Y
12
N
doub
N
13
N
sing
N
14
N
doub
Y
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
doub
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
sing
Y
186
N
doub
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
N
190
N
sing
Y
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
UK
FEBS J.
1742-4658
285
1290
1304
10.1111/febs.14405
29430837
Architecture and hydration of the arginine-binding site of neuropilin-1.
2018
10.2210/pdb5jhk/pdb
pdb_00005jhk
100
1
PIXEL
2015-02-18
DECTRIS PILATUS 6M-F
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
I04
Diamond
0.979
SYNCHROTRON
DIAMOND BEAMLINE I04
17917.291
Neuropilin-1
2
man
polymer
335.358
N-(benzenecarbonyl)glycyl-L-arginine
1
syn
non-polymer
18.015
water
206
nat
water
Vascular endothelial cell growth factor 165 receptor
no
no
GHMFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
KKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKIT
GHMFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
KKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKIT
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
158
NRP1, NRP, VEGF165R
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
Rosetta-gami2-pLysS
pET15B-TEV
Plasmid
Biological sequence
pET15B-TEV-NRP1B1
1
2.07
40.69
VAPOR DIFFUSION, HANGING DROP
7.9
30%PEG3350+0,2M NH4Cl
293
citation
citation_author
citation
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Data collection
Database references
Refinement description
1
0
2017-05-24
1
1
2018-02-28
1
2
2018-04-25
1
3
2024-01-10
_citation.country
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBE
Y
PDBE
2016-04-21
REL
REL
6K8
N-(benzenecarbonyl)glycyl-L-arginine
HOH
water
1KEX
PDB
experimental model
AR6
1
2
6K8
6K8
501
A
HOH
82
3
HOH
HOH
601
A
HOH
117
3
HOH
HOH
602
A
HOH
85
3
HOH
HOH
603
A
HOH
92
3
HOH
HOH
604
A
HOH
121
3
HOH
HOH
605
A
HOH
6
3
HOH
HOH
606
A
HOH
78
3
HOH
HOH
607
A
HOH
113
3
HOH
HOH
608
A
HOH
103
3
HOH
HOH
609
A
HOH
189
3
HOH
HOH
610
A
HOH
38
3
HOH
HOH
611
A
HOH
129
3
HOH
HOH
612
A
HOH
178
3
HOH
HOH
613
A
HOH
146
3
HOH
HOH
614
A
HOH
70
3
HOH
HOH
615
A
HOH
106
3
HOH
HOH
616
A
HOH
173
3
HOH
HOH
617
A
HOH
171
3
HOH
HOH
618
A
HOH
8
3
HOH
HOH
619
A
HOH
2
3
HOH
HOH
620
A
HOH
184
3
HOH
HOH
621
A
HOH
81
3
HOH
HOH
622
A
HOH
80
3
HOH
HOH
623
A
HOH
51
3
HOH
HOH
624
A
HOH
23
3
HOH
HOH
625
A
HOH
158
3
HOH
HOH
626
A
HOH
77
3
HOH
HOH
627
A
HOH
194
3
HOH
HOH
628
A
HOH
91
3
HOH
HOH
629
A
HOH
137
3
HOH
HOH
630
A
HOH
159
3
HOH
HOH
631
A
HOH
13
3
HOH
HOH
632
A
HOH
79
3
HOH
HOH
633
A
HOH
110
3
HOH
HOH
634
A
HOH
125
3
HOH
HOH
635
A
HOH
132
3
HOH
HOH
636
A
HOH
87
3
HOH
HOH
637
A
HOH
154
3
HOH
HOH
638
A
HOH
166
3
HOH
HOH
639
A
HOH
65
3
HOH
HOH
640
A
HOH
163
3
HOH
HOH
641
A
HOH
102
3
HOH
HOH
642
A
HOH
83
3
HOH
HOH
643
A
HOH
104
3
HOH
HOH
644
A
HOH
29
3
HOH
HOH
645
A
HOH
98
3
HOH
HOH
646
A
HOH
181
3
HOH
HOH
647
A
HOH
111
3
HOH
HOH
648
A
HOH
93
3
HOH
HOH
649
A
HOH
130
3
HOH
HOH
650
A
HOH
107
3
HOH
HOH
651
A
HOH
127
3
HOH
HOH
652
A
HOH
170
3
HOH
HOH
653
A
HOH
26
3
HOH
HOH
654
A
HOH
46
3
HOH
HOH
655
A
HOH
52
3
HOH
HOH
656
A
HOH
72
3
HOH
HOH
657
A
HOH
64
3
HOH
HOH
658
A
HOH
60
3
HOH
HOH
659
A
HOH
97
3
HOH
HOH
660
A
HOH
94
3
HOH
HOH
661
A
HOH
57
3
HOH
HOH
662
A
HOH
12
3
HOH
HOH
663
A
HOH
116
3
HOH
HOH
664
A
HOH
101
3
HOH
HOH
665
A
HOH
96
3
HOH
HOH
666
A
HOH
119
3
HOH
HOH
667
A
HOH
63
3
HOH
HOH
668
A
HOH
73
3
HOH
HOH
669
A
HOH
47
3
HOH
HOH
670
A
HOH
168
3
HOH
HOH
671
A
HOH
128
3
HOH
HOH
672
A
HOH
54
3
HOH
HOH
673
A
HOH
149
3
HOH
HOH
674
A
HOH
114
3
HOH
HOH
675
A
HOH
161
3
HOH
HOH
676
A
HOH
35
3
HOH
HOH
677
A
HOH
150
3
HOH
HOH
678
A
HOH
58
3
HOH
HOH
679
A
HOH
156
3
HOH
HOH
680
A
HOH
55
3
HOH
HOH
681
A
HOH
175
3
HOH
HOH
682
A
HOH
27
3
HOH
HOH
683
A
HOH
109
3
HOH
HOH
684
A
HOH
188
3
HOH
HOH
685
A
HOH
142
3
HOH
HOH
686
A
HOH
185
3
HOH
HOH
687
A
HOH
180
3
HOH
HOH
688
A
HOH
21
3
HOH
HOH
689
A
HOH
122
3
HOH
HOH
690
A
HOH
124
3
HOH
HOH
691
A
HOH
190
3
HOH
HOH
692
A
HOH
141
3
HOH
HOH
693
A
HOH
196
3
HOH
HOH
501
B
HOH
49
3
HOH
HOH
502
B
HOH
138
3
HOH
HOH
503
B
HOH
179
3
HOH
HOH
504
B
HOH
22
3
HOH
HOH
505
B
HOH
147
3
HOH
HOH
506
B
HOH
135
3
HOH
HOH
507
B
HOH
120
3
HOH
HOH
508
B
HOH
174
3
HOH
HOH
509
B
HOH
1
3
HOH
HOH
510
B
HOH
59
3
HOH
HOH
511
B
HOH
75
3
HOH
HOH
512
B
HOH
43
3
HOH
HOH
513
B
HOH
15
3
HOH
HOH
514
B
HOH
153
3
HOH
HOH
515
B
HOH
62
3
HOH
HOH
516
B
HOH
11
3
HOH
HOH
517
B
HOH
99
3
HOH
HOH
518
B
HOH
9
3
HOH
HOH
519
B
HOH
17
3
HOH
HOH
520
B
HOH
67
3
HOH
HOH
521
B
HOH
61
3
HOH
HOH
522
B
HOH
84
3
HOH
HOH
523
B
HOH
136
3
HOH
HOH
524
B
HOH
4
3
HOH
HOH
525
B
HOH
31
3
HOH
HOH
526
B
HOH
66
3
HOH
HOH
527
B
HOH
7
3
HOH
HOH
528
B
HOH
5
3
HOH
HOH
529
B
HOH
30
3
HOH
HOH
530
B
HOH
16
3
HOH
HOH
531
B
HOH
40
3
HOH
HOH
532
B
HOH
76
3
HOH
HOH
533
B
HOH
88
3
HOH
HOH
534
B
HOH
157
3
HOH
HOH
535
B
HOH
105
3
HOH
HOH
536
B
HOH
152
3
HOH
HOH
537
B
HOH
162
3
HOH
HOH
538
B
HOH
140
3
HOH
HOH
539
B
HOH
34
3
HOH
HOH
540
B
HOH
151
3
HOH
HOH
541
B
HOH
155
3
HOH
HOH
542
B
HOH
74
3
HOH
HOH
543
B
HOH
33
3
HOH
HOH
544
B
HOH
118
3
HOH
HOH
545
B
HOH
89
3
HOH
HOH
546
B
HOH
164
3
HOH
HOH
547
B
HOH
18
3
HOH
HOH
548
B
HOH
45
3
HOH
HOH
549
B
HOH
24
3
HOH
HOH
550
B
HOH
95
3
HOH
HOH
551
B
HOH
86
3
HOH
HOH
552
B
HOH
123
3
HOH
HOH
553
B
HOH
198
3
HOH
HOH
554
B
HOH
71
3
HOH
HOH
555
B
HOH
41
3
HOH
HOH
556
B
HOH
206
3
HOH
HOH
557
B
HOH
36
3
HOH
HOH
558
B
HOH
44
3
HOH
HOH
559
B
HOH
42
3
HOH
HOH
560
B
HOH
167
3
HOH
HOH
561
B
HOH
48
3
HOH
HOH
562
B
HOH
169
3
HOH
HOH
563
B
HOH
28
3
HOH
HOH
564
B
HOH
112
3
HOH
HOH
565
B
HOH
172
3
HOH
HOH
566
B
HOH
134
3
HOH
HOH
567
B
HOH
68
3
HOH
HOH
568
B
HOH
126
3
HOH
HOH
569
B
HOH
14
3
HOH
HOH
570
B
HOH
177
3
HOH
HOH
571
B
HOH
19
3
HOH
HOH
572
B
HOH
176
3
HOH
HOH
573
B
HOH
100
3
HOH
HOH
574
B
HOH
160
3
HOH
HOH
575
B
HOH
25
3
HOH
HOH
576
B
HOH
133
3
HOH
HOH
577
B
HOH
148
3
HOH
HOH
578
B
HOH
186
3
HOH
HOH
579
B
HOH
108
3
HOH
HOH
580
B
HOH
131
3
HOH
HOH
581
B
HOH
32
3
HOH
HOH
582
B
HOH
192
3
HOH
HOH
583
B
HOH
37
3
HOH
HOH
584
B
HOH
50
3
HOH
HOH
585
B
HOH
3
3
HOH
HOH
586
B
HOH
204
3
HOH
HOH
587
B
HOH
139
3
HOH
HOH
588
B
HOH
205
3
HOH
HOH
589
B
HOH
183
3
HOH
HOH
590
B
HOH
187
3
HOH
HOH
591
B
HOH
195
3
HOH
HOH
592
B
HOH
197
3
HOH
HOH
593
B
HOH
53
3
HOH
HOH
594
B
HOH
145
3
HOH
HOH
595
B
HOH
69
3
HOH
HOH
596
B
HOH
144
3
HOH
HOH
597
B
HOH
56
3
HOH
HOH
598
B
HOH
203
3
HOH
HOH
599
B
HOH
182
3
HOH
HOH
600
B
HOH
200
3
HOH
HOH
601
B
HOH
202
3
HOH
HOH
602
B
HOH
90
3
HOH
HOH
603
B
HOH
115
3
HOH
HOH
604
B
HOH
39
3
HOH
HOH
605
B
HOH
201
3
HOH
HOH
606
B
HOH
10
3
HOH
HOH
607
B
HOH
191
3
HOH
HOH
608
B
HOH
20
3
HOH
HOH
609
B
HOH
165
3
HOH
HOH
610
B
HOH
143
3
HOH
HOH
611
B
HOH
193
3
HOH
HOH
612
B
HOH
199
3
HOH
HOH
613
B
n
1
270
A
n
2
271
A
n
3
272
A
n
4
273
A
LYS
274
n
5
LYS
274
A
CYS
275
n
6
CYS
275
A
MET
276
n
7
MET
276
A
GLU
277
n
8
GLU
277
A
ALA
278
n
9
ALA
278
A
LEU
279
n
10
LEU
279
A
GLY
280
n
11
GLY
280
A
MET
281
n
12
MET
281
A
GLU
282
n
13
GLU
282
A
SER
283
n
14
SER
283
A
GLY
284
n
15
GLY
284
A
GLU
285
n
16
GLU
285
A
ILE
286
n
17
ILE
286
A
HIS
287
n
18
HIS
287
A
SER
288
n
19
SER
288
A
ASP
289
n
20
ASP
289
A
GLN
290
n
21
GLN
290
A
ILE
291
n
22
ILE
291
A
THR
292
n
23
THR
292
A
ALA
293
n
24
ALA
293
A
SER
294
n
25
SER
294
A
SER
295
n
26
SER
295
A
GLN
296
n
27
GLN
296
A
TYR
297
n
28
TYR
297
A
SER
298
n
29
SER
298
A
THR
299
n
30
THR
299
A
ASN
300
n
31
ASN
300
A
TRP
301
n
32
TRP
301
A
SER
302
n
33
SER
302
A
ALA
303
n
34
ALA
303
A
GLU
304
n
35
GLU
304
A
ARG
305
n
36
ARG
305
A
SER
306
n
37
SER
306
A
ARG
307
n
38
ARG
307
A
LEU
308
n
39
LEU
308
A
ASN
309
n
40
ASN
309
A
TYR
310
n
41
TYR
310
A
PRO
311
n
42
PRO
311
A
GLU
312
n
43
GLU
312
A
ASN
313
n
44
ASN
313
A
GLY
314
n
45
GLY
314
A
TRP
315
n
46
TRP
315
A
THR
316
n
47
THR
316
A
PRO
317
n
48
PRO
317
A
GLY
318
n
49
GLY
318
A
GLU
319
n
50
GLU
319
A
ASP
320
n
51
ASP
320
A
SER
321
n
52
SER
321
A
TYR
322
n
53
TYR
322
A
ARG
323
n
54
ARG
323
A
GLU
324
n
55
GLU
324
A
TRP
325
n
56
TRP
325
A
ILE
326
n
57
ILE
326
A
GLN
327
n
58
GLN
327
A
VAL
328
n
59
VAL
328
A
ASP
329
n
60
ASP
329
A
LEU
330
n
61
LEU
330
A
GLY
331
n
62
GLY
331
A
LEU
332
n
63
LEU
332
A
LEU
333
n
64
LEU
333
A
ARG
334
n
65
ARG
334
A
PHE
335
n
66
PHE
335
A
VAL
336
n
67
VAL
336
A
THR
337
n
68
THR
337
A
ALA
338
n
69
ALA
338
A
VAL
339
n
70
VAL
339
A
GLY
340
n
71
GLY
340
A
THR
341
n
72
THR
341
A
GLN
342
n
73
GLN
342
A
GLY
343
n
74
GLY
343
A
ALA
344
n
75
ALA
344
A
ILE
345
n
76
ILE
345
A
SER
346
n
77
SER
346
A
LYS
347
n
78
LYS
347
A
GLU
348
n
79
GLU
348
A
THR
349
n
80
THR
349
A
LYS
350
n
81
LYS
350
A
LYS
351
n
82
LYS
351
A
LYS
352
n
83
LYS
352
A
TYR
353
n
84
TYR
353
A
TYR
354
n
85
TYR
354
A
VAL
355
n
86
VAL
355
A
LYS
356
n
87
LYS
356
A
THR
357
n
88
THR
357
A
TYR
358
n
89
TYR
358
A
LYS
359
n
90
LYS
359
A
ILE
360
n
91
ILE
360
A
ASP
361
n
92
ASP
361
A
VAL
362
n
93
VAL
362
A
SER
363
n
94
SER
363
A
SER
364
n
95
SER
364
A
ASN
365
n
96
ASN
365
A
GLY
366
n
97
GLY
366
A
GLU
367
n
98
GLU
367
A
ASP
368
n
99
ASP
368
A
TRP
369
n
100
TRP
369
A
ILE
370
n
101
ILE
370
A
THR
371
n
102
THR
371
A
ILE
372
n
103
ILE
372
A
LYS
373
n
104
LYS
373
A
GLU
374
n
105
GLU
374
A
GLY
375
n
106
GLY
375
A
ASN
376
n
107
ASN
376
A
LYS
377
n
108
LYS
377
A
PRO
378
n
109
PRO
378
A
VAL
379
n
110
VAL
379
A
LEU
380
n
111
LEU
380
A
PHE
381
n
112
PHE
381
A
GLN
382
n
113
GLN
382
A
GLY
383
n
114
GLY
383
A
ASN
384
n
115
ASN
384
A
THR
385
n
116
THR
385
A
ASN
386
n
117
ASN
386
A
PRO
387
n
118
PRO
387
A
THR
388
n
119
THR
388
A
ASP
389
n
120
ASP
389
A
VAL
390
n
121
VAL
390
A
VAL
391
n
122
VAL
391
A
VAL
392
n
123
VAL
392
A
ALA
393
n
124
ALA
393
A
VAL
394
n
125
VAL
394
A
PHE
395
n
126
PHE
395
A
PRO
396
n
127
PRO
396
A
LYS
397
n
128
LYS
397
A
PRO
398
n
129
PRO
398
A
LEU
399
n
130
LEU
399
A
ILE
400
n
131
ILE
400
A
THR
401
n
132
THR
401
A
ARG
402
n
133
ARG
402
A
PHE
403
n
134
PHE
403
A
VAL
404
n
135
VAL
404
A
ARG
405
n
136
ARG
405
A
ILE
406
n
137
ILE
406
A
LYS
407
n
138
LYS
407
A
PRO
408
n
139
PRO
408
A
ALA
409
n
140
ALA
409
A
THR
410
n
141
THR
410
A
TRP
411
n
142
TRP
411
A
GLU
412
n
143
GLU
412
A
THR
413
n
144
THR
413
A
GLY
414
n
145
GLY
414
A
ILE
415
n
146
ILE
415
A
SER
416
n
147
SER
416
A
MET
417
n
148
MET
417
A
ARG
418
n
149
ARG
418
A
PHE
419
n
150
PHE
419
A
GLU
420
n
151
GLU
420
A
VAL
421
n
152
VAL
421
A
TYR
422
n
153
TYR
422
A
GLY
423
n
154
GLY
423
A
CYS
424
n
155
CYS
424
A
LYS
425
n
156
LYS
425
A
ILE
426
n
157
ILE
426
A
THR
427
n
158
THR
427
A
GLY
270
n
1
GLY
270
B
HIS
271
n
2
HIS
271
B
MET
272
n
3
MET
272
B
PHE
273
n
4
PHE
273
B
LYS
274
n
5
LYS
274
B
CYS
275
n
6
CYS
275
B
MET
276
n
7
MET
276
B
GLU
277
n
8
GLU
277
B
ALA
278
n
9
ALA
278
B
LEU
279
n
10
LEU
279
B
GLY
280
n
11
GLY
280
B
MET
281
n
12
MET
281
B
GLU
282
n
13
GLU
282
B
SER
283
n
14
SER
283
B
GLY
284
n
15
GLY
284
B
GLU
285
n
16
GLU
285
B
ILE
286
n
17
ILE
286
B
HIS
287
n
18
HIS
287
B
SER
288
n
19
SER
288
B
ASP
289
n
20
ASP
289
B
GLN
290
n
21
GLN
290
B
ILE
291
n
22
ILE
291
B
THR
292
n
23
THR
292
B
ALA
293
n
24
ALA
293
B
SER
294
n
25
SER
294
B
SER
295
n
26
SER
295
B
GLN
296
n
27
GLN
296
B
TYR
297
n
28
TYR
297
B
SER
298
n
29
SER
298
B
THR
299
n
30
THR
299
B
ASN
300
n
31
ASN
300
B
TRP
301
n
32
TRP
301
B
SER
302
n
33
SER
302
B
ALA
303
n
34
ALA
303
B
GLU
304
n
35
GLU
304
B
ARG
305
n
36
ARG
305
B
SER
306
n
37
SER
306
B
ARG
307
n
38
ARG
307
B
LEU
308
n
39
LEU
308
B
ASN
309
n
40
ASN
309
B
TYR
310
n
41
TYR
310
B
PRO
311
n
42
PRO
311
B
GLU
312
n
43
GLU
312
B
ASN
313
n
44
ASN
313
B
GLY
314
n
45
GLY
314
B
TRP
315
n
46
TRP
315
B
THR
316
n
47
THR
316
B
PRO
317
n
48
PRO
317
B
GLY
318
n
49
GLY
318
B
GLU
319
n
50
GLU
319
B
ASP
320
n
51
ASP
320
B
SER
321
n
52
SER
321
B
TYR
322
n
53
TYR
322
B
ARG
323
n
54
ARG
323
B
GLU
324
n
55
GLU
324
B
TRP
325
n
56
TRP
325
B
ILE
326
n
57
ILE
326
B
GLN
327
n
58
GLN
327
B
VAL
328
n
59
VAL
328
B
ASP
329
n
60
ASP
329
B
LEU
330
n
61
LEU
330
B
GLY
331
n
62
GLY
331
B
LEU
332
n
63
LEU
332
B
LEU
333
n
64
LEU
333
B
ARG
334
n
65
ARG
334
B
PHE
335
n
66
PHE
335
B
VAL
336
n
67
VAL
336
B
THR
337
n
68
THR
337
B
ALA
338
n
69
ALA
338
B
VAL
339
n
70
VAL
339
B
GLY
340
n
71
GLY
340
B
THR
341
n
72
THR
341
B
GLN
342
n
73
GLN
342
B
GLY
343
n
74
GLY
343
B
ALA
344
n
75
ALA
344
B
ILE
345
n
76
ILE
345
B
SER
346
n
77
SER
346
B
LYS
347
n
78
LYS
347
B
GLU
348
n
79
GLU
348
B
THR
349
n
80
THR
349
B
LYS
350
n
81
LYS
350
B
LYS
351
n
82
LYS
351
B
LYS
352
n
83
LYS
352
B
TYR
353
n
84
TYR
353
B
TYR
354
n
85
TYR
354
B
VAL
355
n
86
VAL
355
B
LYS
356
n
87
LYS
356
B
THR
357
n
88
THR
357
B
TYR
358
n
89
TYR
358
B
LYS
359
n
90
LYS
359
B
ILE
360
n
91
ILE
360
B
ASP
361
n
92
ASP
361
B
VAL
362
n
93
VAL
362
B
SER
363
n
94
SER
363
B
SER
364
n
95
SER
364
B
ASN
365
n
96
ASN
365
B
GLY
366
n
97
GLY
366
B
GLU
367
n
98
GLU
367
B
ASP
368
n
99
ASP
368
B
TRP
369
n
100
TRP
369
B
ILE
370
n
101
ILE
370
B
THR
371
n
102
THR
371
B
ILE
372
n
103
ILE
372
B
LYS
373
n
104
LYS
373
B
GLU
374
n
105
GLU
374
B
GLY
375
n
106
GLY
375
B
ASN
376
n
107
ASN
376
B
LYS
377
n
108
LYS
377
B
PRO
378
n
109
PRO
378
B
VAL
379
n
110
VAL
379
B
LEU
380
n
111
LEU
380
B
PHE
381
n
112
PHE
381
B
GLN
382
n
113
GLN
382
B
GLY
383
n
114
GLY
383
B
ASN
384
n
115
ASN
384
B
THR
385
n
116
THR
385
B
ASN
386
n
117
ASN
386
B
PRO
387
n
118
PRO
387
B
THR
388
n
119
THR
388
B
ASP
389
n
120
ASP
389
B
VAL
390
n
121
VAL
390
B
VAL
391
n
122
VAL
391
B
VAL
392
n
123
VAL
392
B
ALA
393
n
124
ALA
393
B
VAL
394
n
125
VAL
394
B
PHE
395
n
126
PHE
395
B
PRO
396
n
127
PRO
396
B
LYS
397
n
128
LYS
397
B
PRO
398
n
129
PRO
398
B
LEU
399
n
130
LEU
399
B
ILE
400
n
131
ILE
400
B
THR
401
n
132
THR
401
B
ARG
402
n
133
ARG
402
B
PHE
403
n
134
PHE
403
B
VAL
404
n
135
VAL
404
B
ARG
405
n
136
ARG
405
B
ILE
406
n
137
ILE
406
B
LYS
407
n
138
LYS
407
B
PRO
408
n
139
PRO
408
B
ALA
409
n
140
ALA
409
B
THR
410
n
141
THR
410
B
TRP
411
n
142
TRP
411
B
GLU
412
n
143
GLU
412
B
THR
413
n
144
THR
413
B
GLY
414
n
145
GLY
414
B
ILE
415
n
146
ILE
415
B
SER
416
n
147
SER
416
B
MET
417
n
148
MET
417
B
ARG
418
n
149
ARG
418
B
PHE
419
n
150
PHE
419
B
GLU
420
n
151
GLU
420
B
VAL
421
n
152
VAL
421
B
TYR
422
n
153
TYR
422
B
GLY
423
n
154
GLY
423
B
CYS
424
n
155
CYS
424
B
LYS
425
n
156
LYS
425
B
ILE
426
n
157
ILE
426
B
THR
427
n
158
THR
427
B
0.6099
-0.8612
0.1639
1.2641
-0.3222
0.3457
0.1009
0.0173
-0.0211
-0.1735
-0.0497
0.0216
0.0659
-0.0290
-0.0512
0.0614
-0.0103
0.0052
0.0563
0.0033
0.0547
refined
34.8066
-21.6850
42.8396
X-RAY DIFFRACTION
0.7924
0.0997
-0.2357
1.0062
0.4852
0.5408
-0.0866
0.0018
0.0437
-0.0817
0.0287
0.1467
-0.0054
0.0092
0.0579
0.0162
0.0003
-0.0252
0.0512
-0.0093
0.0883
refined
54.6002
0.9342
56.9944
X-RAY DIFFRACTION
A
274
A
427
X-RAY DIFFRACTION
1
B
270
B
427
X-RAY DIFFRACTION
2
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
270
A
GLY
1
1
Y
1
A
HIS
271
A
HIS
2
1
Y
1
A
MET
272
A
MET
3
1
Y
1
A
PHE
273
A
PHE
4
1
Y
1
B
B
OE2
O
GLU
HOH
277
501
2.12
1
5.48
0.90
118.30
123.78
B
B
B
CB
CG
OD1
ASP
ASP
ASP
289
289
289
N
1
A
CYS
275
-151.29
68.89
1
A
MET
276
-144.32
42.43
1
A
ASN
313
64.56
-136.86
1
A
THR
413
78.77
-55.89
1
B
CYS
275
-150.68
71.99
1
B
MET
276
-140.03
37.30
1
B
ASN
313
62.81
-140.49
1
B
GLU
367
-126.23
-55.05
1
B
ASP
368
-61.21
94.92
1
B
THR
413
79.43
-44.58
24.723
-0.08
0.00
-0.78
-0.16
0.00
0.45
0.964
0.944
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.21509
0.16728
0.16957
1.80
45.39
1303
25765
4.8
99.87
5.915
0.090
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.131
0.128
0.80
0.80
1.20
1kex
MAXIMUM LIKELIHOOD
MASK
1.80
45.39
206
2719
24
0
2489
0.016
0.020
2580
0.001
0.020
2414
1.731
1.941
3499
0.884
2.988
5573
7.274
5.000
312
36.260
24.107
112
13.262
15.000
444
20.801
15.000
14
0.118
0.200
378
0.009
0.021
2909
0.001
0.020
594
1.328
1.626
1249
1.329
1.625
1247
2.091
2.427
1557
2.090
2.427
1558
1.819
1.907
1331
1.818
1.909
1332
2.963
2.760
1942
5.236
14.243
2959
5.083
13.930
2901
0.324
0.269
1.847
118
1898
20
99.80
1.63
40.54
5JHK
36381
0.999
0.064
1
18.9
6.7
99.8
1.393
1.63
1.67
1.2
1
6.8
99.7
refinement
REFMAC
5.8.0135
data reduction
xia2
data scaling
Aimless
phasing
PHASER
N
X-ray structure of neuropilin-1 b1 domain complexed with Arg-6 ligand.
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
A
HIS
287
A
HIS
18
HELX_P
A
ASP
289
A
ASP
20
5
AA1
3
A
SER
298
A
SER
29
HELX_P
A
ARG
307
A
ARG
38
5
AA2
10
B
HIS
287
B
HIS
18
HELX_P
B
ASP
289
B
ASP
20
5
AA3
3
B
SER
298
B
SER
29
HELX_P
B
ARG
307
B
ARG
38
5
AA4
10
disulf
2.034
A
CYS
275
A
SG
CYS
6
1_555
A
CYS
424
A
SG
CYS
155
1_555
disulf
2.080
B
CYS
275
B
SG
CYS
6
1_555
B
CYS
424
B
SG
CYS
155
1_555
SIGNALING PROTEIN
SIGNALING PROTEIN, Neuropilin-1, Angiogenesis
NRP1_HUMAN
UNP
1
273
O14786
FKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKK
YYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKIT
273
427
5JHK
273
427
O14786
A
1
4
158
273
427
5JHK
273
427
O14786
B
1
4
158
1
expression tag
GLY
270
5JHK
A
O14786
UNP
1
1
expression tag
HIS
271
5JHK
A
O14786
UNP
2
1
expression tag
MET
272
5JHK
A
O14786
UNP
3
2
expression tag
GLY
270
5JHK
B
O14786
UNP
1
2
expression tag
HIS
271
5JHK
B
O14786
UNP
2
2
expression tag
MET
272
5JHK
B
O14786
UNP
3
4
3
2
2
4
3
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
291
A
ILE
22
A
ALA
293
A
ALA
24
A
ILE
326
A
ILE
57
A
ASP
329
A
ASP
60
A
PHE
403
A
PHE
134
A
PRO
408
A
PRO
139
A
TYR
358
A
TYR
89
A
SER
363
A
SER
94
A
LEU
399
A
LEU
130
A
THR
401
A
THR
132
A
ARG
334
A
ARG
65
A
GLN
342
A
GLN
73
A
ARG
418
A
ARG
149
A
CYS
424
A
CYS
155
A
ALA
338
A
ALA
69
A
THR
341
A
THR
72
A
VAL
391
A
VAL
122
A
VAL
394
A
VAL
125
A
TYR
354
A
TYR
85
A
THR
357
A
THR
88
A
THR
410
A
THR
141
A
GLU
412
A
GLU
143
B
ILE
291
B
ILE
22
B
ALA
293
B
ALA
24
B
ILE
326
B
ILE
57
B
ASP
329
B
ASP
60
B
PHE
403
B
PHE
134
B
PRO
408
B
PRO
139
B
TYR
358
B
TYR
89
B
SER
363
B
SER
94
B
LEU
399
B
LEU
130
B
THR
401
B
THR
132
B
ARG
334
B
ARG
65
B
GLN
342
B
GLN
73
B
ARG
418
B
ARG
149
B
CYS
424
B
CYS
155
B
ALA
338
B
ALA
69
B
THR
341
B
THR
72
B
VAL
391
B
VAL
122
B
VAL
394
B
VAL
125
B
TYR
354
B
TYR
85
B
THR
357
B
THR
88
B
THR
410
B
THR
141
B
GLU
412
B
GLU
143
binding site for residue 6K8 A 501
A
6K8
501
Software
14
A
TYR
297
A
TYR
28
14
1_555
A
TRP
301
A
TRP
32
14
1_555
A
THR
316
A
THR
47
14
1_555
A
ASP
320
A
ASP
51
14
1_555
A
SER
346
A
SER
77
14
1_555
A
THR
349
A
THR
80
14
1_555
A
TYR
353
A
TYR
84
14
1_555
A
GLY
414
A
GLY
145
14
1_555
A
ILE
415
A
ILE
146
14
1_555
A
HOH
606
D
HOH
14
1_555
A
HOH
632
D
HOH
14
1_555
A
HOH
677
D
HOH
14
1_555
B
MET
276
B
MET
7
14
1_454
B
TYR
422
B
TYR
153
14
1_454
4
P 1 21 1