0.016610
0.000000
0.000000
0.000000
0.013033
0.000000
0.000000
0.000000
0.012938
0.000000
0.000000
0.000000
Yang, S.
Zheng, X.
Li, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
60.204
76.730
77.294
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C14 H20 N6 O5 S
384.411
n
S-ADENOSYL-L-HOMOCYSTEINE
L-peptide linking
C N S -1
58.082
THIOCYANATE ION
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
C
N
294
N
S
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
C
N
299
S
C
N
300
N
O
N
301
S
C
N
302
N
O
N
303
R
C
N
304
N
O
N
305
R
C
Y
306
N
N
Y
307
N
C
Y
308
N
N
Y
309
N
C
Y
310
N
C
N
311
N
N
Y
312
N
N
Y
313
N
C
Y
314
N
N
Y
315
N
C
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
S
N
337
N
C
N
338
N
N
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
sing
Y
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
sing
Y
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
doub
N
319
N
sing
N
320
N
sing
Y
321
N
sing
Y
322
N
doub
N
323
N
sing
Y
324
N
sing
N
325
N
sing
N
326
N
trip
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
US
Genes Dev.
GEDEEP
2056
0890-9369
30
1611
1616
10.1101/gad.284323.116
27474439
Molecular basis for oncohistone H3 recognition by SETD2 methyltransferase
2016
10.2210/pdb5jjy/pdb
pdb_00005jjy
100
1
mirrors
CCD
2014-10-07
ADSC QUANTUM 315r
double crystal, Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9504
1.0
BL17U
SSRF
0.9504
SYNCHROTRON
SSRF BEAMLINE BL17U
32042.568
Histone-lysine N-methyltransferase SETD2
2.1.1.43
catalytic domain, UNP residues 1434-1711
1
man
polymer
1560.822
Histone H3.3
H3 peptide, UNP residues 30-43
K36M
1
syn
polymer
65.409
ZINC ION
3
syn
non-polymer
384.411
S-ADENOSYL-L-HOMOCYSTEINE
1
syn
non-polymer
58.082
THIOCYANATE ION
5
syn
non-polymer
18.015
water
204
nat
water
HIF-1,Huntingtin yeast partner B,Huntingtin-interacting protein 1,HIP-1,Huntingtin-interacting protein B,Lysine N-methyltransferase 3A,SET domain-containing protein 2,hSET2,p231HBP
no
no
SGETSVPPGSALVGPSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQG
EIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKAR
VKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYG
KEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRK
SGETSVPPGSALVGPSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQG
EIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKAR
VKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYG
KEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRK
A
polypeptide(L)
no
no
APSTGGVMKPHRYR
APSTGGVMKPHRYR
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
279
SETD2
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
Biological sequence
pET28b
1
2.66
58.68
0.240
0.007
VAPOR DIFFUSION, HANGING DROP
8.5
0.2 M KSCN, 0.1 M Bis-Tris Propane, 20% PEG3350
277
citation
diffrn_detector
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_conn_type
repository
Initial release
Data collection
Database references
Derived calculations
Data collection
Database references
Refinement description
Derived calculations
1
0
2016-11-02
1
1
2017-08-30
1
2
2023-11-08
1
3
2024-04-03
_citation.journal_id_CSD
_diffrn_detector.detector
_pdbx_struct_oper_list.symmetry_operation
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn_type.id
N
RCSB
Y
PDBJ
2016-04-25
REL
REL
ZN
ZINC ION
SAH
S-ADENOSYL-L-HOMOCYSTEINE
SCN
THIOCYANATE ION
HOH
water
chemically synthesized
9606
Human
Homo sapiens
sample
1
14
4H12
PDB
experimental model
ZN
1801
3
ZN
ZN
1801
A
ZN
1802
3
ZN
ZN
1802
A
ZN
1803
3
ZN
ZN
1803
A
SAH
1
4
SAH
SAH
1804
A
SCN
2
5
SCN
SCN
1805
A
SCN
3
5
SCN
SCN
1806
A
SCN
4
5
SCN
SCN
1807
A
SCN
5
5
SCN
SCN
1808
A
SCN
1
5
SCN
SCN
101
B
HOH
198
6
HOH
HOH
1901
A
HOH
35
6
HOH
HOH
1902
A
HOH
114
6
HOH
HOH
1903
A
HOH
109
6
HOH
HOH
1904
A
HOH
87
6
HOH
HOH
1905
A
HOH
190
6
HOH
HOH
1906
A
HOH
106
6
HOH
HOH
1907
A
HOH
46
6
HOH
HOH
1908
A
HOH
131
6
HOH
HOH
1909
A
HOH
135
6
HOH
HOH
1910
A
HOH
3
6
HOH
HOH
1911
A
HOH
17
6
HOH
HOH
1912
A
HOH
167
6
HOH
HOH
1913
A
HOH
44
6
HOH
HOH
1914
A
HOH
18
6
HOH
HOH
1915
A
HOH
21
6
HOH
HOH
1916
A
HOH
15
6
HOH
HOH
1917
A
HOH
100
6
HOH
HOH
1918
A
HOH
8
6
HOH
HOH
1919
A
HOH
183
6
HOH
HOH
1920
A
HOH
191
6
HOH
HOH
1921
A
HOH
90
6
HOH
HOH
1922
A
HOH
110
6
HOH
HOH
1923
A
HOH
30
6
HOH
HOH
1924
A
HOH
25
6
HOH
HOH
1925
A
HOH
43
6
HOH
HOH
1926
A
HOH
123
6
HOH
HOH
1927
A
HOH
37
6
HOH
HOH
1928
A
HOH
9
6
HOH
HOH
1929
A
HOH
83
6
HOH
HOH
1930
A
HOH
11
6
HOH
HOH
1931
A
HOH
112
6
HOH
HOH
1932
A
HOH
153
6
HOH
HOH
1933
A
HOH
151
6
HOH
HOH
1934
A
HOH
59
6
HOH
HOH
1935
A
HOH
166
6
HOH
HOH
1936
A
HOH
127
6
HOH
HOH
1937
A
HOH
128
6
HOH
HOH
1938
A
HOH
119
6
HOH
HOH
1939
A
HOH
52
6
HOH
HOH
1940
A
HOH
115
6
HOH
HOH
1941
A
HOH
158
6
HOH
HOH
1942
A
HOH
6
6
HOH
HOH
1943
A
HOH
5
6
HOH
HOH
1944
A
HOH
14
6
HOH
HOH
1945
A
HOH
184
6
HOH
HOH
1946
A
HOH
1
6
HOH
HOH
1947
A
HOH
79
6
HOH
HOH
1948
A
HOH
62
6
HOH
HOH
1949
A
HOH
204
6
HOH
HOH
1950
A
HOH
77
6
HOH
HOH
1951
A
HOH
125
6
HOH
HOH
1952
A
HOH
116
6
HOH
HOH
1953
A
HOH
61
6
HOH
HOH
1954
A
HOH
57
6
HOH
HOH
1955
A
HOH
174
6
HOH
HOH
1956
A
HOH
39
6
HOH
HOH
1957
A
HOH
78
6
HOH
HOH
1958
A
HOH
126
6
HOH
HOH
1959
A
HOH
113
6
HOH
HOH
1960
A
HOH
152
6
HOH
HOH
1961
A
HOH
91
6
HOH
HOH
1962
A
HOH
16
6
HOH
HOH
1963
A
HOH
36
6
HOH
HOH
1964
A
HOH
98
6
HOH
HOH
1965
A
HOH
66
6
HOH
HOH
1966
A
HOH
81
6
HOH
HOH
1967
A
HOH
45
6
HOH
HOH
1968
A
HOH
29
6
HOH
HOH
1969
A
HOH
19
6
HOH
HOH
1970
A
HOH
196
6
HOH
HOH
1971
A
HOH
4
6
HOH
HOH
1972
A
HOH
34
6
HOH
HOH
1973
A
HOH
42
6
HOH
HOH
1974
A
HOH
86
6
HOH
HOH
1975
A
HOH
12
6
HOH
HOH
1976
A
HOH
103
6
HOH
HOH
1977
A
HOH
162
6
HOH
HOH
1978
A
HOH
94
6
HOH
HOH
1979
A
HOH
117
6
HOH
HOH
1980
A
HOH
88
6
HOH
HOH
1981
A
HOH
56
6
HOH
HOH
1982
A
HOH
93
6
HOH
HOH
1983
A
HOH
40
6
HOH
HOH
1984
A
HOH
137
6
HOH
HOH
1985
A
HOH
160
6
HOH
HOH
1986
A
HOH
155
6
HOH
HOH
1987
A
HOH
65
6
HOH
HOH
1988
A
HOH
13
6
HOH
HOH
1989
A
HOH
50
6
HOH
HOH
1990
A
HOH
41
6
HOH
HOH
1991
A
HOH
156
6
HOH
HOH
1992
A
HOH
2
6
HOH
HOH
1993
A
HOH
179
6
HOH
HOH
1994
A
HOH
85
6
HOH
HOH
1995
A
HOH
76
6
HOH
HOH
1996
A
HOH
189
6
HOH
HOH
1997
A
HOH
186
6
HOH
HOH
1998
A
HOH
124
6
HOH
HOH
1999
A
HOH
51
6
HOH
HOH
2000
A
HOH
121
6
HOH
HOH
2001
A
HOH
27
6
HOH
HOH
2002
A
HOH
89
6
HOH
HOH
2003
A
HOH
195
6
HOH
HOH
2004
A
HOH
154
6
HOH
HOH
2005
A
HOH
20
6
HOH
HOH
2006
A
HOH
26
6
HOH
HOH
2007
A
HOH
69
6
HOH
HOH
2008
A
HOH
32
6
HOH
HOH
2009
A
HOH
132
6
HOH
HOH
2010
A
HOH
104
6
HOH
HOH
2011
A
HOH
28
6
HOH
HOH
2012
A
HOH
33
6
HOH
HOH
2013
A
HOH
49
6
HOH
HOH
2014
A
HOH
31
6
HOH
HOH
2015
A
HOH
58
6
HOH
HOH
2016
A
HOH
97
6
HOH
HOH
2017
A
HOH
92
6
HOH
HOH
2018
A
HOH
130
6
HOH
HOH
2019
A
HOH
165
6
HOH
HOH
2020
A
HOH
48
6
HOH
HOH
2021
A
HOH
102
6
HOH
HOH
2022
A
HOH
144
6
HOH
HOH
2023
A
HOH
73
6
HOH
HOH
2024
A
HOH
84
6
HOH
HOH
2025
A
HOH
107
6
HOH
HOH
2026
A
HOH
120
6
HOH
HOH
2027
A
HOH
99
6
HOH
HOH
2028
A
HOH
47
6
HOH
HOH
2029
A
HOH
197
6
HOH
HOH
2030
A
HOH
164
6
HOH
HOH
2031
A
HOH
136
6
HOH
HOH
2032
A
HOH
148
6
HOH
HOH
2033
A
HOH
180
6
HOH
HOH
2034
A
HOH
55
6
HOH
HOH
2035
A
HOH
72
6
HOH
HOH
2036
A
HOH
149
6
HOH
HOH
2037
A
HOH
101
6
HOH
HOH
2038
A
HOH
63
6
HOH
HOH
2039
A
HOH
74
6
HOH
HOH
2040
A
HOH
134
6
HOH
HOH
2041
A
HOH
202
6
HOH
HOH
2042
A
HOH
169
6
HOH
HOH
2043
A
HOH
173
6
HOH
HOH
2044
A
HOH
145
6
HOH
HOH
2045
A
HOH
118
6
HOH
HOH
2046
A
HOH
24
6
HOH
HOH
2047
A
HOH
168
6
HOH
HOH
2048
A
HOH
133
6
HOH
HOH
2049
A
HOH
22
6
HOH
HOH
2050
A
HOH
176
6
HOH
HOH
2051
A
HOH
150
6
HOH
HOH
2052
A
HOH
122
6
HOH
HOH
2053
A
HOH
172
6
HOH
HOH
2054
A
HOH
201
6
HOH
HOH
2055
A
HOH
157
6
HOH
HOH
2056
A
HOH
111
6
HOH
HOH
2057
A
HOH
182
6
HOH
HOH
2058
A
HOH
23
6
HOH
HOH
2059
A
HOH
188
6
HOH
HOH
2060
A
HOH
67
6
HOH
HOH
2061
A
HOH
177
6
HOH
HOH
2062
A
HOH
194
6
HOH
HOH
2063
A
HOH
138
6
HOH
HOH
2064
A
HOH
70
6
HOH
HOH
2065
A
HOH
193
6
HOH
HOH
2066
A
HOH
80
6
HOH
HOH
2067
A
HOH
105
6
HOH
HOH
2068
A
HOH
192
6
HOH
HOH
2069
A
HOH
141
6
HOH
HOH
2070
A
HOH
139
6
HOH
HOH
2071
A
HOH
159
6
HOH
HOH
2072
A
HOH
64
6
HOH
HOH
2073
A
HOH
53
6
HOH
HOH
2074
A
HOH
163
6
HOH
HOH
2075
A
HOH
200
6
HOH
HOH
2076
A
HOH
129
6
HOH
HOH
2077
A
HOH
68
6
HOH
HOH
2078
A
HOH
181
6
HOH
HOH
2079
A
HOH
187
6
HOH
HOH
2080
A
HOH
147
6
HOH
HOH
2081
A
HOH
199
6
HOH
HOH
2082
A
HOH
142
6
HOH
HOH
2083
A
HOH
171
6
HOH
HOH
2084
A
HOH
140
6
HOH
HOH
2085
A
HOH
75
6
HOH
HOH
2086
A
HOH
95
6
HOH
HOH
2087
A
HOH
82
6
HOH
HOH
2088
A
HOH
146
6
HOH
HOH
2089
A
HOH
108
6
HOH
HOH
2090
A
HOH
175
6
HOH
HOH
201
B
HOH
170
6
HOH
HOH
202
B
HOH
7
6
HOH
HOH
203
B
HOH
96
6
HOH
HOH
204
B
HOH
203
6
HOH
HOH
205
B
HOH
10
6
HOH
HOH
206
B
HOH
71
6
HOH
HOH
207
B
HOH
38
6
HOH
HOH
208
B
HOH
178
6
HOH
HOH
209
B
HOH
161
6
HOH
HOH
210
B
HOH
143
6
HOH
HOH
211
B
HOH
60
6
HOH
HOH
212
B
HOH
185
6
HOH
HOH
213
B
HOH
54
6
HOH
HOH
214
B
n
1
1433
A
n
2
1434
A
n
3
1435
A
n
4
1436
A
n
5
1437
A
n
6
1438
A
n
7
1439
A
n
8
1440
A
n
9
1441
A
n
10
1442
A
n
11
1443
A
n
12
1444
A
n
13
1445
A
n
14
1446
A
PRO
1447
n
15
PRO
1447
A
SER
1448
n
16
SER
1448
A
CYS
1449
n
17
CYS
1449
A
VAL
1450
n
18
VAL
1450
A
MET
1451
n
19
MET
1451
A
ASP
1452
n
20
ASP
1452
A
ASP
1453
n
21
ASP
1453
A
PHE
1454
n
22
PHE
1454
A
ARG
1455
n
23
ARG
1455
A
ASP
1456
n
24
ASP
1456
A
PRO
1457
n
25
PRO
1457
A
GLN
1458
n
26
GLN
1458
A
ARG
1459
n
27
ARG
1459
A
TRP
1460
n
28
TRP
1460
A
LYS
1461
n
29
LYS
1461
A
GLU
1462
n
30
GLU
1462
A
CYS
1463
n
31
CYS
1463
A
ALA
1464
n
32
ALA
1464
A
LYS
1465
n
33
LYS
1465
A
GLN
1466
n
34
GLN
1466
A
GLY
1467
n
35
GLY
1467
A
LYS
1468
n
36
LYS
1468
A
MET
1469
n
37
MET
1469
A
PRO
1470
n
38
PRO
1470
A
CYS
1471
n
39
CYS
1471
A
TYR
1472
n
40
TYR
1472
A
PHE
1473
n
41
PHE
1473
A
ASP
1474
n
42
ASP
1474
A
LEU
1475
n
43
LEU
1475
A
ILE
1476
n
44
ILE
1476
A
GLU
1477
n
45
GLU
1477
A
GLU
1478
n
46
GLU
1478
A
ASN
1479
n
47
ASN
1479
A
VAL
1480
n
48
VAL
1480
A
TYR
1481
n
49
TYR
1481
A
LEU
1482
n
50
LEU
1482
A
THR
1483
n
51
THR
1483
A
GLU
1484
n
52
GLU
1484
A
ARG
1485
n
53
ARG
1485
A
ALA
1486
n
54
LYS
1486
A
n
55
1487
A
n
56
1488
A
n
57
1489
A
n
58
1490
A
n
59
1491
A
n
60
1492
A
n
61
1493
A
n
62
1494
A
n
63
1495
A
n
64
1496
A
MET
1497
n
65
MET
1497
A
GLN
1498
n
66
GLN
1498
A
CYS
1499
n
67
CYS
1499
A
GLU
1500
n
68
GLU
1500
A
CYS
1501
n
69
CYS
1501
A
THR
1502
n
70
THR
1502
A
PRO
1503
n
71
PRO
1503
A
LEU
1504
n
72
LEU
1504
A
SER
1505
n
73
SER
1505
A
LYS
1506
n
74
LYS
1506
A
ASP
1507
n
75
ASP
1507
A
GLU
1508
n
76
GLU
1508
A
ARG
1509
n
77
ARG
1509
A
ALA
1510
n
78
ALA
1510
A
GLN
1511
n
79
GLN
1511
A
GLY
1512
n
80
GLY
1512
A
GLU
1513
n
81
GLU
1513
A
ILE
1514
n
82
ILE
1514
A
ALA
1515
n
83
ALA
1515
A
CYS
1516
n
84
CYS
1516
A
GLY
1517
n
85
GLY
1517
A
GLU
1518
n
86
GLU
1518
A
ASP
1519
n
87
ASP
1519
A
CYS
1520
n
88
CYS
1520
A
LEU
1521
n
89
LEU
1521
A
ASN
1522
n
90
ASN
1522
A
ARG
1523
n
91
ARG
1523
A
LEU
1524
n
92
LEU
1524
A
LEU
1525
n
93
LEU
1525
A
MET
1526
n
94
MET
1526
A
ILE
1527
n
95
ILE
1527
A
GLU
1528
n
96
GLU
1528
A
CYS
1529
n
97
CYS
1529
A
SER
1530
n
98
SER
1530
A
SER
1531
n
99
SER
1531
A
ARG
1532
n
100
ARG
1532
A
CYS
1533
n
101
CYS
1533
A
PRO
1534
n
102
PRO
1534
A
ASN
1535
n
103
ASN
1535
A
GLY
1536
n
104
GLY
1536
A
ASP
1537
n
105
ASP
1537
A
TYR
1538
n
106
TYR
1538
A
CYS
1539
n
107
CYS
1539
A
SER
1540
n
108
SER
1540
A
ASN
1541
n
109
ASN
1541
A
ARG
1542
n
110
ARG
1542
A
ARG
1543
n
111
ARG
1543
A
PHE
1544
n
112
PHE
1544
A
GLN
1545
n
113
GLN
1545
A
ARG
1546
n
114
ARG
1546
A
LYS
1547
n
115
LYS
1547
A
GLN
1548
n
116
GLN
1548
A
HIS
1549
n
117
HIS
1549
A
ALA
1550
n
118
ALA
1550
A
ASP
1551
n
119
ASP
1551
A
VAL
1552
n
120
VAL
1552
A
GLU
1553
n
121
GLU
1553
A
VAL
1554
n
122
VAL
1554
A
ILE
1555
n
123
ILE
1555
A
LEU
1556
n
124
LEU
1556
A
THR
1557
n
125
THR
1557
A
GLU
1558
n
126
GLU
1558
A
LYS
1559
n
127
LYS
1559
A
LYS
1560
n
128
LYS
1560
A
GLY
1561
n
129
GLY
1561
A
TRP
1562
n
130
TRP
1562
A
GLY
1563
n
131
GLY
1563
A
LEU
1564
n
132
LEU
1564
A
ARG
1565
n
133
ARG
1565
A
ALA
1566
n
134
ALA
1566
A
ALA
1567
n
135
ALA
1567
A
LYS
1568
n
136
LYS
1568
A
ASP
1569
n
137
ASP
1569
A
LEU
1570
n
138
LEU
1570
A
PRO
1571
n
139
PRO
1571
A
SER
1572
n
140
SER
1572
A
ASN
1573
n
141
ASN
1573
A
THR
1574
n
142
THR
1574
A
PHE
1575
n
143
PHE
1575
A
VAL
1576
n
144
VAL
1576
A
LEU
1577
n
145
LEU
1577
A
GLU
1578
n
146
GLU
1578
A
TYR
1579
n
147
TYR
1579
A
CYS
1580
n
148
CYS
1580
A
GLY
1581
n
149
GLY
1581
A
GLU
1582
n
150
GLU
1582
A
VAL
1583
n
151
VAL
1583
A
LEU
1584
n
152
LEU
1584
A
ASP
1585
n
153
ASP
1585
A
HIS
1586
n
154
HIS
1586
A
LYS
1587
n
155
LYS
1587
A
GLU
1588
n
156
GLU
1588
A
PHE
1589
n
157
PHE
1589
A
LYS
1590
n
158
LYS
1590
A
ALA
1591
n
159
ALA
1591
A
ARG
1592
n
160
ARG
1592
A
VAL
1593
n
161
VAL
1593
A
LYS
1594
n
162
LYS
1594
A
GLU
1595
n
163
GLU
1595
A
TYR
1596
n
164
TYR
1596
A
ALA
1597
n
165
ALA
1597
A
ARG
1598
n
166
ARG
1598
A
ASN
1599
n
167
ASN
1599
A
LYS
1600
n
168
LYS
1600
A
ASN
1601
n
169
ASN
1601
A
ILE
1602
n
170
ILE
1602
A
HIS
1603
n
171
HIS
1603
A
TYR
1604
n
172
TYR
1604
A
TYR
1605
n
173
TYR
1605
A
PHE
1606
n
174
PHE
1606
A
MET
1607
n
175
MET
1607
A
ALA
1608
n
176
ALA
1608
A
LEU
1609
n
177
LEU
1609
A
LYS
1610
n
178
LYS
1610
A
ASN
1611
n
179
ASN
1611
A
ASP
1612
n
180
ASP
1612
A
GLU
1613
n
181
GLU
1613
A
ILE
1614
n
182
ILE
1614
A
ILE
1615
n
183
ILE
1615
A
ASP
1616
n
184
ASP
1616
A
ALA
1617
n
185
ALA
1617
A
THR
1618
n
186
THR
1618
A
GLN
1619
n
187
GLN
1619
A
LYS
1620
n
188
LYS
1620
A
GLY
1621
n
189
GLY
1621
A
ASN
1622
n
190
ASN
1622
A
CYS
1623
n
191
CYS
1623
A
SER
1624
n
192
SER
1624
A
ARG
1625
n
193
ARG
1625
A
PHE
1626
n
194
PHE
1626
A
MET
1627
n
195
MET
1627
A
ASN
1628
n
196
ASN
1628
A
HIS
1629
n
197
HIS
1629
A
SER
1630
n
198
SER
1630
A
CYS
1631
n
199
CYS
1631
A
GLU
1632
n
200
GLU
1632
A
PRO
1633
n
201
PRO
1633
A
ASN
1634
n
202
ASN
1634
A
CYS
1635
n
203
CYS
1635
A
GLU
1636
n
204
GLU
1636
A
THR
1637
n
205
THR
1637
A
GLN
1638
n
206
GLN
1638
A
LYS
1639
n
207
LYS
1639
A
TRP
1640
n
208
TRP
1640
A
THR
1641
n
209
THR
1641
A
VAL
1642
n
210
VAL
1642
A
ASN
1643
n
211
ASN
1643
A
GLY
1644
n
212
GLY
1644
A
GLN
1645
n
213
GLN
1645
A
LEU
1646
n
214
LEU
1646
A
ARG
1647
n
215
ARG
1647
A
VAL
1648
n
216
VAL
1648
A
GLY
1649
n
217
GLY
1649
A
PHE
1650
n
218
PHE
1650
A
PHE
1651
n
219
PHE
1651
A
THR
1652
n
220
THR
1652
A
THR
1653
n
221
THR
1653
A
LYS
1654
n
222
LYS
1654
A
LEU
1655
n
223
LEU
1655
A
VAL
1656
n
224
VAL
1656
A
PRO
1657
n
225
PRO
1657
A
SER
1658
n
226
SER
1658
A
GLY
1659
n
227
GLY
1659
A
SER
1660
n
228
SER
1660
A
GLU
1661
n
229
GLU
1661
A
LEU
1662
n
230
LEU
1662
A
THR
1663
n
231
THR
1663
A
PHE
1664
n
232
PHE
1664
A
ASP
1665
n
233
ASP
1665
A
TYR
1666
n
234
TYR
1666
A
GLN
1667
n
235
GLN
1667
A
PHE
1668
n
236
PHE
1668
A
GLN
1669
n
237
GLN
1669
A
ARG
1670
n
238
ARG
1670
A
TYR
1671
n
239
TYR
1671
A
GLY
1672
n
240
GLY
1672
A
LYS
1673
n
241
LYS
1673
A
GLU
1674
n
242
GLU
1674
A
ALA
1675
n
243
ALA
1675
A
GLN
1676
n
244
GLN
1676
A
LYS
1677
n
245
LYS
1677
A
CYS
1678
n
246
CYS
1678
A
PHE
1679
n
247
PHE
1679
A
CYS
1680
n
248
CYS
1680
A
GLY
1681
n
249
GLY
1681
A
SER
1682
n
250
SER
1682
A
ALA
1683
n
251
ALA
1683
A
ASN
1684
n
252
ASN
1684
A
CYS
1685
n
253
CYS
1685
A
ARG
1686
n
254
ARG
1686
A
GLY
1687
n
255
GLY
1687
A
TYR
1688
n
256
TYR
1688
A
LEU
1689
n
257
LEU
1689
A
GLY
1690
n
258
GLY
1690
A
GLY
1691
n
259
GLY
1691
A
GLU
1692
n
260
GLU
1692
A
ASN
1693
n
261
ASN
1693
A
ARG
1694
n
262
ARG
1694
A
VAL
1695
n
263
VAL
1695
A
SER
1696
n
264
SER
1696
A
ILE
1697
n
265
ILE
1697
A
ARG
1698
n
266
ARG
1698
A
ALA
1699
n
267
ALA
1699
A
ALA
1700
n
268
ALA
1700
A
GLY
1701
n
269
GLY
1701
A
GLY
1702
n
270
GLY
1702
A
LYS
1703
n
271
LYS
1703
A
n
272
1704
A
n
273
1705
A
n
274
1706
A
n
275
1707
A
n
276
1708
A
n
277
1709
A
n
278
1710
A
n
279
1711
A
ALA
29
n
1
ALA
29
B
PRO
30
n
2
PRO
30
B
SER
31
n
3
SER
31
B
THR
32
n
4
THR
32
B
GLY
33
n
5
GLY
33
B
GLY
34
n
6
GLY
34
B
VAL
35
n
7
VAL
35
B
MET
36
n
8
MET
36
B
LYS
37
n
9
LYS
37
B
PRO
38
n
10
PRO
38
B
HIS
39
n
11
HIS
39
B
ARG
40
n
12
ARG
40
B
TYR
41
n
13
TYR
41
B
ARG
42
n
14
ARG
42
B
author_and_software_defined_assembly
PISA
2
dimeric
3170
-52
13980
A
CYS
1499
A
SG
CYS
67
1_555
A
ZN
1801
C
ZN
ZN
1_555
A
CYS
1501
A
SG
CYS
69
1_555
109.2
A
CYS
1499
A
SG
CYS
67
1_555
A
ZN
1801
C
ZN
ZN
1_555
A
CYS
1516
A
SG
CYS
84
1_555
107.5
A
CYS
1501
A
SG
CYS
69
1_555
A
ZN
1801
C
ZN
ZN
1_555
A
CYS
1516
A
SG
CYS
84
1_555
108.0
A
CYS
1499
A
SG
CYS
67
1_555
A
ZN
1801
C
ZN
ZN
1_555
A
CYS
1520
A
SG
CYS
88
1_555
117.0
A
CYS
1501
A
SG
CYS
69
1_555
A
ZN
1801
C
ZN
ZN
1_555
A
CYS
1520
A
SG
CYS
88
1_555
105.2
A
CYS
1516
A
SG
CYS
84
1_555
A
ZN
1801
C
ZN
ZN
1_555
A
CYS
1520
A
SG
CYS
88
1_555
109.7
A
CYS
1516
A
SG
CYS
84
1_555
A
ZN
1802
D
ZN
ZN
1_555
A
CYS
1529
A
SG
CYS
97
1_555
115.9
A
CYS
1516
A
SG
CYS
84
1_555
A
ZN
1802
D
ZN
ZN
1_555
A
CYS
1533
A
SG
CYS
101
1_555
99.8
A
CYS
1529
A
SG
CYS
97
1_555
A
ZN
1802
D
ZN
ZN
1_555
A
CYS
1533
A
SG
CYS
101
1_555
117.6
A
CYS
1516
A
SG
CYS
84
1_555
A
ZN
1802
D
ZN
ZN
1_555
A
CYS
1539
A
SG
CYS
107
1_555
109.8
A
CYS
1529
A
SG
CYS
97
1_555
A
ZN
1802
D
ZN
ZN
1_555
A
CYS
1539
A
SG
CYS
107
1_555
101.2
A
CYS
1533
A
SG
CYS
101
1_555
A
ZN
1802
D
ZN
ZN
1_555
A
CYS
1539
A
SG
CYS
107
1_555
112.9
A
CYS
1631
A
SG
CYS
199
1_555
A
ZN
1803
E
ZN
ZN
1_555
A
CYS
1678
A
SG
CYS
246
1_555
113.5
A
CYS
1631
A
SG
CYS
199
1_555
A
ZN
1803
E
ZN
ZN
1_555
A
CYS
1680
A
SG
CYS
248
1_555
109.3
A
CYS
1678
A
SG
CYS
246
1_555
A
ZN
1803
E
ZN
ZN
1_555
A
CYS
1680
A
SG
CYS
248
1_555
107.3
A
CYS
1631
A
SG
CYS
199
1_555
A
ZN
1803
E
ZN
ZN
1_555
A
CYS
1685
A
SG
CYS
253
1_555
112.3
A
CYS
1678
A
SG
CYS
246
1_555
A
ZN
1803
E
ZN
ZN
1_555
A
CYS
1685
A
SG
CYS
253
1_555
103.5
A
CYS
1680
A
SG
CYS
248
1_555
A
ZN
1803
E
ZN
ZN
1_555
A
CYS
1685
A
SG
CYS
253
1_555
110.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
1449
A
N
CYS
17
A
O
VAL
1554
A
O
VAL
122
A
N
ILE
1555
A
N
ILE
123
A
O
GLY
1563
A
O
GLY
131
A
N
LEU
1564
A
N
LEU
132
A
O
LEU
1662
A
O
LEU
230
A
O
PHE
1664
A
O
PHE
232
A
N
ASN
1628
A
N
ASN
196
A
N
ASP
1474
A
N
ASP
42
A
O
GLY
1621
A
O
GLY
189
A
N
VAL
1480
A
N
VAL
48
A
O
VAL
1583
A
O
VAL
151
A
N
GLU
1582
A
N
GLU
150
A
O
ASP
1616
A
O
ASP
184
A
O
GLU
1613
A
O
GLU
181
A
N
LYS
1610
A
N
LYS
178
A
N
PHE
1606
A
N
PHE
174
B
O
MET
36
B
O
MET
8
B
O
VAL
35
B
O
VAL
7
A
N
GLN
1669
A
N
GLN
237
A
N
VAL
1576
A
N
VAL
144
A
O
PHE
1650
A
O
PHE
218
A
O
GLN
1645
A
O
GLN
213
A
N
VAL
1642
A
N
VAL
210
1
A
CG
LYS
1486
A
CG
LYS
54
1
Y
1
A
CD
LYS
1486
A
CD
LYS
54
1
Y
1
A
CE
LYS
1486
A
CE
LYS
54
1
Y
1
A
NZ
LYS
1486
A
NZ
LYS
54
1
Y
1
A
SER
1433
A
SER
1
1
Y
1
A
GLY
1434
A
GLY
2
1
Y
1
A
GLU
1435
A
GLU
3
1
Y
1
A
THR
1436
A
THR
4
1
Y
1
A
SER
1437
A
SER
5
1
Y
1
A
VAL
1438
A
VAL
6
1
Y
1
A
PRO
1439
A
PRO
7
1
Y
1
A
PRO
1440
A
PRO
8
1
Y
1
A
GLY
1441
A
GLY
9
1
Y
1
A
SER
1442
A
SER
10
1
Y
1
A
ALA
1443
A
ALA
11
1
Y
1
A
LEU
1444
A
LEU
12
1
Y
1
A
VAL
1445
A
VAL
13
1
Y
1
A
GLY
1446
A
GLY
14
1
Y
1
A
LYS
1487
A
LYS
55
1
Y
1
A
ASN
1488
A
ASN
56
1
Y
1
A
LYS
1489
A
LYS
57
1
Y
1
A
SER
1490
A
SER
58
1
Y
1
A
HIS
1491
A
HIS
59
1
Y
1
A
ARG
1492
A
ARG
60
1
Y
1
A
ASP
1493
A
ASP
61
1
Y
1
A
ILE
1494
A
ILE
62
1
Y
1
A
LYS
1495
A
LYS
63
1
Y
1
A
ARG
1496
A
ARG
64
1
Y
1
A
MET
1704
A
MET
272
1
Y
1
A
LYS
1705
A
LYS
273
1
Y
1
A
LYS
1706
A
LYS
274
1
Y
1
A
GLU
1707
A
GLU
275
1
Y
1
A
ARG
1708
A
ARG
276
1
Y
1
A
SER
1709
A
SER
277
1
Y
1
A
ARG
1710
A
ARG
278
1
Y
1
A
LYS
1711
A
LYS
279
1
Y
1
A
B
O
O
HOH
HOH
2066
213
2.17
1
A
CYS
1499
-67.09
-177.17
1
A
LYS
1559
-150.65
15.07
1
A
VAL
1576
-94.05
-69.17
1
B
PRO
30
-64.85
-178.39
125.770
36.5822
16.130
0.2131
0.1784
0.1801
2.0530
40.3850
1178
22948
5.1300
99.7900
0.2100
Random selection
1
FREE R-VALUE
1.350
MOLECULAR REPLACEMENT
21.7700
0.9000
1.1100
4H12
2.0530
40.3850
204
2336
32.67
39.67
44
0
2088
261
0.004
2180
0.709
2916
0.048
294
0.004
383
15.010
1318
0.2434
0.2220
2.1465
151
2649
2800
8
99.0000
0.2577
0.2199
2.2596
127
2681
2808
8
100.0000
0.2629
0.2132
2.4012
138
2700
2838
8
100.0000
0.2589
0.2051
2.5866
139
2696
2835
8
100.0000
0.2400
0.1976
2.8468
151
2707
2858
8
100.0000
0.2136
0.1849
3.2586
164
2708
2872
8
100.0000
0.2062
0.1526
4.1048
153
2753
2906
8
100.0000
0.1728
0.1572
40.3931
155
2876
3031
8
100.0000
27.670
2.050
50.000
5JJY
23012
0.126
0.044
0.128
1.562
1
24.043
7.000
206526
9.000
100.000
0.967
2.050
2.090
1
9.100
100.000
0.803
2.090
2.120
1
9.200
100.000
0.673
2.120
2.160
1
9.100
100.000
0.594
2.160
2.210
1
9.100
100.000
0.541
2.210
2.260
1
9.100
100.000
0.510
2.260
2.310
1
9.100
100.000
0.454
2.310
2.370
1
9.100
100.000
0.405
2.370
2.430
1
9.100
100.000
0.362
2.430
2.500
1
9.100
100.000
0.303
2.500
2.580
1
9.100
100.000
0.260
2.580
2.680
1
9.100
100.000
0.216
2.680
2.780
1
9.000
100.000
0.188
2.780
2.910
1
9.000
100.000
0.149
2.910
3.060
1
8.900
100.000
0.111
3.060
3.250
1
8.900
100.000
0.080
3.250
3.510
1
8.700
100.000
0.065
3.510
3.860
1
8.600
100.000
0.055
3.860
4.420
1
9.100
100.000
0.053
4.420
5.560
1
8.900
100.000
0.053
5.560
50.000
1
8.300
99.500
data collection
DENZO
data scaling
SCALEPACK
phasing
MOLREP
refinement
PHENIX
(1.10_2155: ???)
data extraction
PDB_EXTRACT
3.20
N
Crystal structure of SETD2 bound to histone H3.3 K36M peptide
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
A
ASP
1452
A
ASP
20
HELX_P
A
ARG
1455
A
ARG
23
5
AA1
4
A
ASP
1456
A
ASP
24
HELX_P
A
GLN
1466
A
GLN
34
1
AA2
11
A
SER
1505
A
SER
73
HELX_P
A
GLN
1511
A
GLN
79
1
AA3
7
A
CYS
1520
A
CYS
88
HELX_P
A
LEU
1525
A
LEU
93
1
AA4
6
A
ASN
1535
A
ASN
103
HELX_P
A
CYS
1539
A
CYS
107
5
AA5
5
A
ASP
1585
A
ASP
153
HELX_P
A
ASN
1599
A
ASN
167
1
AA6
15
A
ASN
1622
A
ASN
190
HELX_P
A
MET
1627
A
MET
195
5
AA7
6
A
SER
1696
A
SER
264
HELX_P
A
GLY
1701
A
GLY
269
1
AA8
6
covale
2.041
none
A
CYS
1463
A
SG
CYS
31
1_555
A
SCN
1807
I
S
SCN
1_555
metalc
2.295
A
CYS
1499
A
SG
CYS
67
1_555
A
ZN
1801
C
ZN
ZN
1_555
metalc
2.401
A
CYS
1501
A
SG
CYS
69
1_555
A
ZN
1801
C
ZN
ZN
1_555
metalc
2.495
A
CYS
1516
A
SG
CYS
84
1_555
A
ZN
1801
C
ZN
ZN
1_555
metalc
2.259
A
CYS
1516
A
SG
CYS
84
1_555
A
ZN
1802
D
ZN
ZN
1_555
metalc
2.459
A
CYS
1520
A
SG
CYS
88
1_555
A
ZN
1801
C
ZN
ZN
1_555
metalc
2.396
A
CYS
1529
A
SG
CYS
97
1_555
A
ZN
1802
D
ZN
ZN
1_555
metalc
2.368
A
CYS
1533
A
SG
CYS
101
1_555
A
ZN
1802
D
ZN
ZN
1_555
metalc
2.314
A
CYS
1539
A
SG
CYS
107
1_555
A
ZN
1802
D
ZN
ZN
1_555
metalc
2.400
A
CYS
1631
A
SG
CYS
199
1_555
A
ZN
1803
E
ZN
ZN
1_555
metalc
2.278
A
CYS
1678
A
SG
CYS
246
1_555
A
ZN
1803
E
ZN
ZN
1_555
metalc
2.300
A
CYS
1680
A
SG
CYS
248
1_555
A
ZN
1803
E
ZN
ZN
1_555
metalc
2.403
A
CYS
1685
A
SG
CYS
253
1_555
A
ZN
1803
E
ZN
ZN
1_555
TRANSFERASE
SET domain, TRANSFERASE
SETD2_HUMAN
UNP
1
1434
Q9BYW2
GETSVPPGSALVGPSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGE
IACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARV
KEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGK
EAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRK
H33_HUMAN
UNP
2
30
P84243
APSTGGVKKPHRYR
1434
1711
5JJY
1434
1711
Q9BYW2
A
1
2
279
30
43
5JJY
29
42
P84243
B
2
1
14
1
expression tag
SER
1433
5JJY
A
Q9BYW2
UNP
1
2
LYS
engineered mutation
MET
36
5JJY
B
P84243
UNP
37
8
5
2
6
3
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
1448
A
SER
16
A
VAL
1450
A
VAL
18
A
VAL
1552
A
VAL
120
A
LEU
1556
A
LEU
124
A
TRP
1562
A
TRP
130
A
ALA
1566
A
ALA
134
A
GLU
1661
A
GLU
229
A
PHE
1664
A
PHE
232
A
ASN
1628
A
ASN
196
A
HIS
1629
A
HIS
197
A
ASP
1474
A
ASP
42
A
LEU
1475
A
LEU
43
A
LYS
1620
A
LYS
188
A
GLY
1621
A
GLY
189
A
VAL
1480
A
VAL
48
A
TYR
1481
A
TYR
49
A
GLU
1582
A
GLU
150
A
LEU
1584
A
LEU
152
A
GLU
1613
A
GLU
181
A
ASP
1616
A
ASP
184
A
PHE
1606
A
PHE
174
A
LYS
1610
A
LYS
178
B
GLY
34
B
GLY
6
B
MET
36
B
MET
8
A
GLN
1669
A
GLN
237
A
ARG
1670
A
ARG
238
A
PHE
1575
A
PHE
143
A
GLU
1578
A
GLU
146
A
GLN
1645
A
GLN
213
A
THR
1652
A
THR
220
A
CYS
1635
A
CYS
203
A
VAL
1642
A
VAL
210
binding site for residue ZN A 1801
A
ZN
1801
Software
4
binding site for residue ZN A 1802
A
ZN
1802
Software
4
binding site for residue ZN A 1803
A
ZN
1803
Software
4
binding site for residue SAH A 1804
A
SAH
1804
Software
17
binding site for residue SCN A 1805
A
SCN
1805
Software
7
binding site for residue SCN A 1806
A
SCN
1806
Software
6
binding site for residue SCN A 1807
A
SCN
1807
Software
1
binding site for residue SCN A 1808
A
SCN
1808
Software
5
binding site for residue SCN B 101
B
SCN
101
Software
6
A
CYS
1499
A
CYS
67
4
1_555
A
CYS
1501
A
CYS
69
4
1_555
A
CYS
1516
A
CYS
84
4
1_555
A
CYS
1520
A
CYS
88
4
1_555
A
CYS
1516
A
CYS
84
4
1_555
A
CYS
1529
A
CYS
97
4
1_555
A
CYS
1533
A
CYS
101
4
1_555
A
CYS
1539
A
CYS
107
4
1_555
A
CYS
1631
A
CYS
199
4
1_555
A
CYS
1678
A
CYS
246
4
1_555
A
CYS
1680
A
CYS
248
4
1_555
A
CYS
1685
A
CYS
253
4
1_555
A
LYS
1560
A
LYS
128
17
1_555
A
GLY
1561
A
GLY
129
17
1_555
A
TRP
1562
A
TRP
130
17
1_555
A
HIS
1603
A
HIS
171
17
1_555
A
TYR
1604
A
TYR
172
17
1_555
A
TYR
1605
A
TYR
173
17
1_555
A
ARG
1625
A
ARG
193
17
1_555
A
PHE
1626
A
PHE
194
17
1_555
A
ASN
1628
A
ASN
196
17
1_555
A
HIS
1629
A
HIS
197
17
1_555
A
TYR
1666
A
TYR
234
17
1_555
A
LYS
1677
A
LYS
245
17
1_555
A
CYS
1678
A
CYS
246
17
1_555
A
PHE
1679
A
PHE
247
17
1_555
A
HOH
1948
L
HOH
17
2_454
A
HOH
2000
L
HOH
17
1_555
A
HOH
2036
L
HOH
17
1_555
A
MET
1497
A
MET
65
7
1_555
A
GLN
1498
A
GLN
66
7
1_555
A
CYS
1499
A
CYS
67
7
1_555
A
ASN
1522
A
ASN
90
7
1_555
A
CYS
1529
A
CYS
97
7
1_555
A
SER
1530
A
SER
98
7
1_555
A
CYS
1533
A
CYS
101
7
1_555
A
HIS
1629
A
HIS
197
6
1_555
A
PHE
1668
A
PHE
236
6
1_555
A
ARG
1686
A
ARG
254
6
1_555
A
GLY
1690
A
GLY
258
6
1_555
A
GLY
1691
A
GLY
259
6
1_555
A
HOH
1981
L
HOH
6
1_555
A
CYS
1463
A
CYS
31
1
1_555
A
CYS
1539
A
CYS
107
5
1_555
A
SER
1540
A
SER
108
5
1_555
A
GLN
1548
A
GLN
116
5
1_555
A
HOH
1972
L
HOH
5
1_555
A
HOH
1996
L
HOH
5
1_555
A
THR
1637
A
THR
205
6
1_555
A
LYS
1639
A
LYS
207
6
1_555
B
PRO
38
B
PRO
10
6
1_555
B
HIS
39
B
HIS
11
6
1_555
B
ARG
40
B
ARG
12
6
1_555
B
HOH
208
M
HOH
6
1_555
19
P 21 21 21