1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ishida, H.
Jensen, K.V.
Woodman, A.G.
Hyndman, M.E.
Vogel, H.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Sci Rep
2045-2322
7
40662
40662
10.1038/srep40662
28145401
The Calcium-Dependent Switch Helix of L-Plastin Regulates Actin Bundling.
2017
10.2210/pdb5jol/pdb
pdb_00005jol
9274.443
Plastin-2
EF-hand domain (UNP residues 1-82)
1
man
polymer
L-plastin,LC64P,Lymphocyte cytosolic protein 1,LCP-1
no
no
MARGSVSDEEMMELREAFAKVDTDGNGYISFNELNDLFKAACLPLPGYRVREITENLMATGDLDQDGRISFDEFIKIFHG
LK
MARGSVSDEEMMELREAFAKVDTDGNGYISFNELNDLFKAACLPLPGYRVREITENLMATGDLDQDGRISFDEFIKIFHG
LK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
82
LCP1, PLS2
9606
Homo sapiens
562
Escherichia coli
Biological sequence
database_2
pdbx_database_status
pdbx_nmr_spectrometer
repository
Initial release
Data collection
Database references
Other
1
0
2017-04-19
1
1
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_spectrometer.model
N
RCSB
Y
RCSB
2016-05-02
REL
REL
REL
REL
structures with the lowest energy
200
30
isotropic
1
3D HNCACB
isotropic
1
3D CBCA(CO)NH
isotropic
1
3D HNCO
isotropic
1
3D HN(CO)CA
isotropic
1
3D HNCA
isotropic
1
3D HN(CO)CA
isotropic
2
3D 1H-15N NOESY
isotropic
2
3D 1H-13C NOESY
1
mM
[U-98% 15N]
0.5
mM
[U-99% 13C; U-98% 15N]
0.5
mM
[U-99% 13C; U-98% 15N]
100
mM
conditions_1
6.8
pH
1
atm
25
C
torsion angle dynamics
1
lowest energy
1 mM [U-98% 15N] EF-hand domain of L-plastin, 90% H2O/10% D2O
15N_sample
90% H2O/10% D2O
solution
0.5 mM [U-99% 13C; U-98% 15N] EF-hand domain of L-plastin, 90% H2O/10% D2O
13C,15N_sample
90% H2O/10% D2O
solution
0.5 mM [U-99% 13C; U-98% 15N] EF-hand domain of L-plastin, 100% D2O
13C,15N_sample
100% D2O
solution
Johnson, One Moon Scientific
chemical shift assignment
NMRView
Guntert, Mumenthaler and Wuthrich
refinement
CYANA
Guntert, Mumenthaler and Wuthrich
structure calculation
CYANA
600
Bruker
AVANCE
700
Bruker
AVANCE
MET
1
n
1
MET
1
A
ALA
2
n
2
ALA
2
A
ARG
3
n
3
ARG
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
VAL
6
n
6
VAL
6
A
SER
7
n
7
SER
7
A
ASP
8
n
8
ASP
8
A
GLU
9
n
9
GLU
9
A
GLU
10
n
10
GLU
10
A
MET
11
n
11
MET
11
A
MET
12
n
12
MET
12
A
GLU
13
n
13
GLU
13
A
LEU
14
n
14
LEU
14
A
ARG
15
n
15
ARG
15
A
GLU
16
n
16
GLU
16
A
ALA
17
n
17
ALA
17
A
PHE
18
n
18
PHE
18
A
ALA
19
n
19
ALA
19
A
LYS
20
n
20
LYS
20
A
VAL
21
n
21
VAL
21
A
ASP
22
n
22
ASP
22
A
THR
23
n
23
THR
23
A
ASP
24
n
24
ASP
24
A
GLY
25
n
25
GLY
25
A
ASN
26
n
26
ASN
26
A
GLY
27
n
27
GLY
27
A
TYR
28
n
28
TYR
28
A
ILE
29
n
29
ILE
29
A
SER
30
n
30
SER
30
A
PHE
31
n
31
PHE
31
A
ASN
32
n
32
ASN
32
A
GLU
33
n
33
GLU
33
A
LEU
34
n
34
LEU
34
A
ASN
35
n
35
ASN
35
A
ASP
36
n
36
ASP
36
A
LEU
37
n
37
LEU
37
A
PHE
38
n
38
PHE
38
A
LYS
39
n
39
LYS
39
A
ALA
40
n
40
ALA
40
A
ALA
41
n
41
ALA
41
A
CYS
42
n
42
CYS
42
A
LEU
43
n
43
LEU
43
A
PRO
44
n
44
PRO
44
A
LEU
45
n
45
LEU
45
A
PRO
46
n
46
PRO
46
A
GLY
47
n
47
GLY
47
A
TYR
48
n
48
TYR
48
A
ARG
49
n
49
ARG
49
A
VAL
50
n
50
VAL
50
A
ARG
51
n
51
ARG
51
A
GLU
52
n
52
GLU
52
A
ILE
53
n
53
ILE
53
A
THR
54
n
54
THR
54
A
GLU
55
n
55
GLU
55
A
ASN
56
n
56
ASN
56
A
LEU
57
n
57
LEU
57
A
MET
58
n
58
MET
58
A
ALA
59
n
59
ALA
59
A
THR
60
n
60
THR
60
A
GLY
61
n
61
GLY
61
A
ASP
62
n
62
ASP
62
A
LEU
63
n
63
LEU
63
A
ASP
64
n
64
ASP
64
A
GLN
65
n
65
GLN
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
ILE
69
n
69
ILE
69
A
SER
70
n
70
SER
70
A
PHE
71
n
71
PHE
71
A
ASP
72
n
72
ASP
72
A
GLU
73
n
73
GLU
73
A
PHE
74
n
74
PHE
74
A
ILE
75
n
75
ILE
75
A
LYS
76
n
76
LYS
76
A
ILE
77
n
77
ILE
77
A
PHE
78
n
78
PHE
78
A
HIS
79
n
79
HIS
79
A
GLY
80
n
80
GLY
80
A
LEU
81
n
81
LEU
81
A
LYS
82
n
82
LYS
82
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
29
A
N
ILE
29
A
O
ILE
69
A
O
ILE
69
1
A
ARG
3
-174.70
144.73
1
A
SER
5
-141.49
-56.79
1
A
ASP
22
-106.28
48.83
1
A
PRO
46
-69.81
-166.63
1
A
ASP
66
-178.92
-29.71
1
A
ARG
68
-74.78
-168.78
2
A
PRO
46
-69.81
-169.57
2
A
ASP
66
-178.10
-27.90
3
A
SER
5
-174.69
-175.98
3
A
ASP
22
-107.55
46.88
3
A
PRO
46
-69.75
-169.69
3
A
ASP
66
-171.05
-32.76
4
A
ASP
22
-109.48
46.59
4
A
PRO
46
-69.76
-168.48
5
A
ARG
3
-174.44
136.59
5
A
PRO
46
-69.83
-168.95
5
A
ASP
66
-177.22
-26.95
6
A
ARG
3
-102.62
-74.87
6
A
ASP
22
-106.44
49.08
6
A
PRO
46
-69.85
-168.59
6
A
ASP
66
-176.65
-29.33
7
A
ALA
2
-106.13
-75.05
7
A
ARG
3
55.56
74.34
7
A
SER
5
-177.45
-176.09
7
A
ASP
22
-105.30
50.70
7
A
PRO
46
-69.84
-169.54
7
A
ARG
68
-123.41
-167.62
8
A
SER
5
-134.06
-66.74
8
A
SER
7
-49.26
153.93
8
A
PRO
46
-69.79
-167.72
8
A
ASP
66
-179.79
-28.59
8
A
ARG
68
-72.13
-169.83
9
A
SER
5
-130.19
-57.38
9
A
PRO
46
-69.85
-169.72
9
A
LEU
63
-95.89
31.73
9
A
ASP
66
-179.77
-28.47
9
A
ARG
68
-79.46
-168.70
10
A
ARG
3
-74.69
-73.74
10
A
SER
5
-126.24
-53.87
10
A
ASP
22
-105.64
50.11
10
A
PRO
46
-69.78
-168.36
10
A
ASP
66
-152.89
-39.87
11
A
ARG
3
-108.82
-62.01
11
A
ASP
22
-103.24
46.01
11
A
PRO
46
-69.67
-169.45
11
A
ASP
66
-168.45
-32.43
12
A
SER
5
-146.80
-46.06
12
A
ASP
22
-105.29
50.82
12
A
PRO
46
-69.65
-167.89
12
A
ASP
66
-153.26
-39.28
13
A
ALA
2
-87.08
-75.39
13
A
ARG
3
53.69
70.36
13
A
SER
5
-89.75
-70.97
13
A
ASP
22
-107.03
49.40
13
A
PRO
46
-69.67
-169.89
14
A
ARG
3
39.20
42.53
14
A
SER
5
-178.28
-175.24
14
A
PRO
46
-69.82
-168.07
14
A
ASP
66
-174.55
-29.12
15
A
ALA
2
-175.50
-177.90
15
A
ARG
3
-97.29
-72.73
15
A
SER
5
-140.98
-49.22
15
A
PRO
46
-69.76
-167.89
15
A
ASP
66
179.03
-25.16
16
A
SER
5
-104.10
70.44
16
A
PRO
46
-69.66
-170.28
16
A
ARG
68
-128.08
-169.08
17
A
SER
7
-49.13
153.39
17
A
ASP
22
-109.08
46.03
17
A
PRO
46
-69.80
-170.83
17
A
LEU
81
-51.69
103.16
18
A
ARG
3
60.29
97.27
18
A
VAL
6
66.55
143.85
18
A
PRO
46
-69.79
-169.41
18
A
ASP
66
-158.98
-37.07
18
A
ARG
68
-76.35
-168.12
19
A
SER
5
-142.94
-48.03
19
A
ASP
22
-106.27
47.02
19
A
PRO
46
-69.74
-168.52
19
A
ASP
66
-168.09
-33.65
20
A
SER
5
-153.71
-46.22
20
A
ASP
22
-118.84
75.45
20
A
PRO
46
-69.80
-168.10
20
A
ASP
66
-172.87
-29.37
21
A
SER
5
-130.59
-67.13
21
A
PRO
46
-69.83
-166.74
21
A
THR
60
-91.56
40.60
21
A
ASP
66
-146.41
-27.88
21
A
ARG
68
-66.76
-170.42
22
A
PRO
46
-69.79
-168.95
22
A
ASP
66
-147.17
-37.76
22
A
ARG
68
-72.38
-169.28
22
A
LEU
81
-50.10
104.20
23
A
SER
5
-144.91
-59.92
23
A
ASP
22
-107.33
49.65
23
A
PRO
46
-69.79
-167.86
23
A
THR
60
-93.10
35.42
23
A
ASP
66
179.34
-27.46
24
A
ARG
3
-121.75
-73.69
24
A
SER
5
-178.75
-176.33
24
A
SER
7
-57.61
170.11
24
A
ASP
22
-109.17
46.17
24
A
PRO
46
-69.70
-169.83
24
A
ASP
66
-141.47
-35.55
25
A
SER
5
-174.76
141.44
25
A
PRO
46
-69.70
-166.93
25
A
THR
60
-91.84
40.37
25
A
ASP
66
-164.35
-35.70
25
A
ARG
68
-77.09
-165.33
26
A
SER
5
-133.84
-69.55
26
A
SER
7
-49.51
152.52
26
A
ASP
22
-105.09
50.31
26
A
PRO
46
-69.80
-169.52
26
A
ARG
68
-118.12
-167.31
27
A
ALA
2
-173.86
106.15
27
A
ASP
22
-105.24
49.65
27
A
PRO
46
-69.77
-167.16
27
A
ASP
66
-146.53
-37.00
27
A
ARG
68
-75.66
-168.75
28
A
SER
5
-154.36
-67.49
28
A
ASP
22
-104.93
54.14
28
A
PRO
46
-69.74
-168.98
28
A
ASP
66
-150.14
-39.33
29
A
ALA
2
-178.23
142.76
29
A
PRO
46
-69.80
-167.88
29
A
ASP
66
-171.12
-31.50
30
A
SER
5
-174.69
-169.84
30
A
SER
7
-64.08
-176.30
30
A
PRO
46
-69.85
-171.24
N
Calcium-free EF-hand domain of L-plastin
1
N
N
A
SER
7
A
SER
7
HELX_P
A
ASP
22
A
ASP
22
1
AA1
16
A
SER
30
A
SER
30
HELX_P
A
ALA
41
A
ALA
41
1
AA2
12
A
PRO
46
A
PRO
46
HELX_P
A
MET
58
A
MET
58
1
AA3
13
A
PHE
71
A
PHE
71
HELX_P
A
GLY
80
A
GLY
80
1
AA4
10
METAL BINDING PROTEIN
Calcium-binding, EF-hand, L-plastin, METAL BINDING PROTEIN
PLSL_HUMAN
UNP
1
1
P13796
MARGSVSDEEMMELREAFAKVDTDGNGYISFNELNDLFKAACLPLPGYRVREITENLMATGDLDQDGRISFDEFIKIFHG
LK
1
82
5JOL
1
82
P13796
A
1
1
82
2
anti-parallel
A
TYR
28
A
TYR
28
A
ILE
29
A
ILE
29
A
ILE
69
A
ILE
69
A
SER
70
A
SER
70