0.009602
0.005544
0.000000
0.000000
0.011088
0.000000
0.000000
0.000000
0.022727
0.00000
0.00000
0.00000
Janowski, R.
Schlundt, A.
Sattler, M.
Niessing, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
104.140
104.140
44.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
Sci Rep
2045-2322
7
1051
1051
10.1038/s41598-017-01031-9
28432336
Structure-function analysis of the DNA-binding domain of a transmembrane transcriptional activator.
2017
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
2014-07-14
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
1.2536
1.0
0.99987
1.0
ID29
ESRF
0.99987
SYNCHROTRON
ESRF BEAMLINE ID29
12586.452
Transcriptional activator CadC
DNA BINDING DOMAIN OF CADC
1
man
polymer
65.409
ZINC ION
5
syn
non-polymer
18.015
water
28
nat
water
no
no
GAMAQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK
SLKDNDEDSPVYIATVPKRGYKLMVPVIWY
GAMAQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK
SLKDNDEDSPVYIATVPKRGYKLMVPVIWY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K12
sample
1
110
cadC, b4133, JW4094
83333
Escherichia coli (strain K12)
469008
Escherichia coli BL21(DE3)
Biological sequence
PETTRX1A
1
2.74
55.05
VAPOR DIFFUSION, HANGING DROP
6.5
10 MM MES PH 6.5, 10 MM ZINC SULFATE,
27.5% PEG550 MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
6.5
293
repository
Initial release
Database references
1
0
2017-04-26
1
1
2017-05-03
NMR RESONANCE ASSIGNMENTS OF CYTOPLASMIC CADC FROM E.COLI
N
RCSB
Y
PDBE
2016-05-10
REL
REL
ZN
ZINC ION
HOH
water
ZN
201
2
ZN
ZN
201
A
ZN
202
2
ZN
ZN
202
A
ZN
203
2
ZN
ZN
203
A
ZN
204
2
ZN
ZN
204
A
ZN
205
2
ZN
ZN
205
A
HOH
318
3
HOH
HOH
301
A
HOH
317
3
HOH
HOH
302
A
HOH
308
3
HOH
HOH
303
A
HOH
313
3
HOH
HOH
304
A
HOH
304
3
HOH
HOH
305
A
HOH
323
3
HOH
HOH
306
A
HOH
306
3
HOH
HOH
307
A
HOH
307
3
HOH
HOH
308
A
HOH
315
3
HOH
HOH
309
A
HOH
301
3
HOH
HOH
310
A
HOH
319
3
HOH
HOH
311
A
HOH
302
3
HOH
HOH
312
A
HOH
310
3
HOH
HOH
313
A
HOH
322
3
HOH
HOH
314
A
HOH
305
3
HOH
HOH
315
A
HOH
303
3
HOH
HOH
316
A
HOH
327
3
HOH
HOH
317
A
HOH
325
3
HOH
HOH
318
A
HOH
309
3
HOH
HOH
319
A
HOH
326
3
HOH
HOH
320
A
HOH
311
3
HOH
HOH
321
A
HOH
324
3
HOH
HOH
322
A
HOH
328
3
HOH
HOH
323
A
HOH
316
3
HOH
HOH
324
A
HOH
320
3
HOH
HOH
325
A
HOH
314
3
HOH
HOH
326
A
HOH
312
3
HOH
HOH
327
A
HOH
321
3
HOH
HOH
328
A
n
1
-2
A
n
2
-1
A
n
3
0
A
ALA
1
n
4
ALA
1
A
GLN
2
n
5
GLN
2
A
GLN
3
n
6
GLN
3
A
PRO
4
n
7
PRO
4
A
VAL
5
n
8
VAL
5
A
VAL
6
n
9
VAL
6
A
ARG
7
n
10
ARG
7
A
VAL
8
n
11
VAL
8
A
GLY
9
n
12
GLY
9
A
GLU
10
n
13
GLU
10
A
TRP
11
n
14
TRP
11
A
LEU
12
n
15
LEU
12
A
VAL
13
n
16
VAL
13
A
THR
14
n
17
THR
14
A
PRO
15
n
18
PRO
15
A
SER
16
n
19
SER
16
A
ILE
17
n
20
ILE
17
A
ASN
18
n
21
ASN
18
A
GLN
19
n
22
GLN
19
A
ILE
20
n
23
ILE
20
A
SER
21
n
24
SER
21
A
ARG
22
n
25
ARG
22
A
ASN
23
n
26
ASN
23
A
GLY
24
n
27
GLY
24
A
ARG
25
n
28
ARG
25
A
GLN
26
n
29
GLN
26
A
LEU
27
n
30
LEU
27
A
THR
28
n
31
THR
28
A
LEU
29
n
32
LEU
29
A
GLU
30
n
33
GLU
30
A
PRO
31
n
34
PRO
31
A
ARG
32
n
35
ARG
32
A
LEU
33
n
36
LEU
33
A
ILE
34
n
37
ILE
34
A
ASP
35
n
38
ASP
35
A
LEU
36
n
39
LEU
36
A
LEU
37
n
40
LEU
37
A
VAL
38
n
41
VAL
38
A
PHE
39
n
42
PHE
39
A
PHE
40
n
43
PHE
40
A
ALA
41
n
44
ALA
41
A
GLN
42
n
45
GLN
42
A
HIS
43
n
46
HIS
43
A
SER
44
n
47
SER
44
A
GLY
45
n
48
GLY
45
A
GLU
46
n
49
GLU
46
A
VAL
47
n
50
VAL
47
A
LEU
48
n
51
LEU
48
A
SER
49
n
52
SER
49
A
ARG
50
n
53
ARG
50
A
ASP
51
n
54
ASP
51
A
GLU
52
n
55
GLU
52
A
LEU
53
n
56
LEU
53
A
ILE
54
n
57
ILE
54
A
ASP
55
n
58
ASP
55
A
ASN
56
n
59
ASN
56
A
VAL
57
n
60
VAL
57
A
TRP
58
n
61
TRP
58
A
LYS
59
n
62
LYS
59
A
ARG
60
n
63
ARG
60
A
SER
61
n
64
SER
61
A
ILE
62
n
65
ILE
62
A
VAL
63
n
66
VAL
63
A
THR
64
n
67
THR
64
A
ASN
65
n
68
ASN
65
A
HIS
66
n
69
HIS
66
A
VAL
67
n
70
VAL
67
A
VAL
68
n
71
VAL
68
A
THR
69
n
72
THR
69
A
GLN
70
n
73
GLN
70
A
SER
71
n
74
SER
71
A
ILE
72
n
75
ILE
72
A
SER
73
n
76
SER
73
A
GLU
74
n
77
GLU
74
A
LEU
75
n
78
LEU
75
A
ARG
76
n
79
ARG
76
A
LYS
77
n
80
LYS
77
A
SER
78
n
81
SER
78
A
LEU
79
n
82
LEU
79
A
LYS
80
n
83
LYS
80
A
ASP
81
n
84
ASP
81
A
ASN
82
n
85
ASN
82
A
ASP
83
n
86
ASP
83
A
GLU
84
n
87
GLU
84
A
ASP
85
n
88
ASP
85
A
SER
86
n
89
SER
86
A
PRO
87
n
90
PRO
87
A
VAL
88
n
91
VAL
88
A
TYR
89
n
92
TYR
89
A
ILE
90
n
93
ILE
90
A
ALA
91
n
94
ALA
91
A
THR
92
n
95
THR
92
A
VAL
93
n
96
VAL
93
A
PRO
94
n
97
PRO
94
A
LYS
95
n
98
LYS
95
A
ARG
96
n
99
ARG
96
A
GLY
97
n
100
GLY
97
A
TYR
98
n
101
TYR
98
A
LYS
99
n
102
LYS
99
A
LEU
100
n
103
LEU
100
A
MET
101
n
104
MET
101
A
VAL
102
n
105
VAL
102
A
PRO
103
n
106
PRO
103
A
VAL
104
n
107
VAL
104
A
ILE
105
n
108
ILE
105
A
TRP
106
n
109
TRP
106
A
TYR
107
n
110
TYR
107
A
2.7583
1.3380
0.9888
4.4493
0.6225
2.5561
-0.0464
0.0637
0.1226
0.0985
0.1600
0.2122
-0.0705
-0.1468
-0.1136
0.1864
-0.1519
0.0189
0.2169
0.0013
0.0260
refined
30.7633
-29.1747
0.8728
X-RAY DIFFRACTION
A
1
A
107
X-RAY DIFFRACTION
1
software_defined_assembly
PISA
1
monomeric
440
-119
6590
A
GLU
30
A
OE1
GLU
33
1_555
A
ZN
202
C
ZN
ZN
1_555
A
GLU
74
A
OE2
GLU
77
1_555
76.0
A
GLU
30
A
OE1
GLU
33
1_555
A
ZN
202
C
ZN
ZN
1_555
A
HIS
66
A
NE2
HIS
69
1_555
136.1
A
GLU
74
A
OE2
GLU
77
1_555
A
ZN
202
C
ZN
ZN
1_555
A
HIS
66
A
NE2
HIS
69
1_555
83.1
A
GLU
30
A
OE2
GLU
33
1_555
A
ZN
201
B
ZN
ZN
1_555
A
GLU
74
A
OE1
GLU
77
1_555
119.9
A
GLU
30
A
OE2
GLU
33
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HOH
314
G
O
HOH
1_555
98.3
A
GLU
74
A
OE1
GLU
77
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HOH
314
G
O
HOH
1_555
132.3
A
GLU
30
A
OE2
GLU
33
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
66
A
NE2
HIS
69
1_555
163.9
A
GLU
74
A
OE1
GLU
77
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
66
A
NE2
HIS
69
1_555
65.3
A
HOH
314
G
O
HOH
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
66
A
NE2
HIS
69
1_555
86.1
A
HIS
43
A
ND1
HIS
46
1_555
A
ZN
204
E
ZN
ZN
1_555
A
GLU
46
A
OE1
GLU
49
1_555
116.7
A
HIS
43
A
ND1
HIS
46
1_555
A
ZN
204
E
ZN
ZN
1_555
A
TYR
107
A
O
TYR
110
1_555
27.3
A
GLU
46
A
OE1
GLU
49
1_555
A
ZN
204
E
ZN
ZN
1_555
A
TYR
107
A
O
TYR
110
1_555
103.1
A
HIS
43
A
ND1
HIS
46
1_555
A
ZN
204
E
ZN
ZN
1_555
A
TYR
107
A
OXT
TYR
110
1_555
23.5
A
GLU
46
A
OE1
GLU
49
1_555
A
ZN
204
E
ZN
ZN
1_555
A
TYR
107
A
OXT
TYR
110
1_555
103.6
A
TYR
107
A
O
TYR
110
1_555
A
ZN
204
E
ZN
ZN
1_555
A
TYR
107
A
OXT
TYR
110
1_555
4.3
A
GLU
46
A
OE2
GLU
49
1_555
A
ZN
203
D
ZN
ZN
1_555
A
TYR
107
A
O
TYR
110
1_555
153.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
27
A
O
LEU
30
A
N
ILE
20
A
N
ILE
23
A
O
GLN
19
A
O
GLN
22
A
N
THR
14
A
N
THR
17
A
O
TRP
11
A
O
TRP
14
A
N
VAL
8
A
N
VAL
11
A
N
ARG
7
A
N
ARG
10
A
O
ILE
105
A
O
ILE
108
A
N
LEU
48
A
N
LEU
51
A
O
TYR
98
A
O
TYR
101
A
O
LYS
99
A
O
LYS
102
A
N
ALA
91
A
N
ALA
94
1
A
HOH
324
G
HOH
1
A
HOH
328
G
HOH
1
A
GLY
-2
A
GLY
1
1
Y
1
A
ALA
-1
A
ALA
2
1
Y
1
A
MET
0
A
MET
3
1
Y
1
A
LYS
59
-37.87
129.59
90.67
0.70000
0.35000
-0.00000
0.70000
-0.00000
-2.28000
0.975
0.966
HYDROGENS HAVE BEEN ADDED IN THE RIDING
POSITIONS
0.223
0.182
0.185
2.05
90.00
460
8762
5.000
99.6
12.343
0.140
RANDOM
1
THROUGHOUT
0.000
SAD
0.160
0.149
0.80
0.80
1.20
2.05
90.00
28
903
5
0
870
0.020
0.019
888
0.001
0.020
876
2.169
1.960
1210
0.971
3.000
2007
7.832
5.000
106
41.937
23.659
41
19.248
15.000
158
25.563
15.000
8
0.121
0.200
141
0.012
0.021
986
0.001
0.020
202
4.459
4.592
427
4.460
4.589
426
5.663
6.865
532
5.661
6.866
533
5.464
5.060
461
5.444
5.058
461
7.602
7.392
678
9.165
36.655
972
9.168
36.656
970
0.3230
0.2790
2.10
35
629
20
99.85
48.88
2.050
90.000
5JU7
9222
0.000
0.03800
1
35.7600
14.6
99.6
0.59300
2.05
2.10
4.090
1
99.9
data reduction
XDS
data scaling
SCALA
phasing
Auto-Rickshaw
refinement
REFMAC
5.8.0073
phasing
Auto-Rickshaw
phasing
Auto-Rickshaw
phasing
Auto-Rickshaw
phasing
Auto-Rickshaw
N
Transcriptional activator CadC
DNA BINDING DOMAIN OF E.COLI CADC
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
PRO
15
A
PRO
18
HELX_P
A
ILE
17
A
ILE
20
5
AA1
3
A
GLU
30
A
GLU
33
HELX_P
A
HIS
43
A
HIS
46
1
AA2
14
A
SER
49
A
SER
52
HELX_P
A
TRP
58
A
TRP
61
1
AA3
10
A
THR
64
A
THR
67
HELX_P
A
ASP
81
A
ASP
84
1
AA4
18
metalc
2.255
A
GLU
30
A
OE1
GLU
33
1_555
A
ZN
202
C
ZN
ZN
1_555
metalc
2.449
A
GLU
30
A
OE2
GLU
33
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.429
A
HIS
43
A
ND1
HIS
46
1_555
A
ZN
204
E
ZN
ZN
1_555
metalc
2.224
A
GLU
46
A
OE1
GLU
49
1_555
A
ZN
204
E
ZN
ZN
1_555
metalc
2.685
A
GLU
46
A
OE2
GLU
49
1_555
A
ZN
203
D
ZN
ZN
1_555
metalc
2.395
A
GLU
74
A
OE1
GLU
77
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.299
A
GLU
74
A
OE2
GLU
77
1_555
A
ZN
202
C
ZN
ZN
1_555
metalc
2.397
A
ZN
201
B
ZN
ZN
1_555
A
HOH
314
G
O
HOH
1_555
metalc
2.340
A
HIS
66
A
NE2
HIS
69
1_555
A
ZN
202
C
ZN
ZN
12_544
metalc
2.326
A
HIS
66
A
NE2
HIS
69
1_555
A
ZN
201
B
ZN
ZN
12_544
metalc
2.485
A
TYR
107
A
O
TYR
110
1_555
A
ZN
203
D
ZN
ZN
10_555
metalc
2.455
A
TYR
107
A
O
TYR
110
1_555
A
ZN
204
E
ZN
ZN
10_555
metalc
2.556
A
TYR
107
A
OXT
TYR
110
1_555
A
ZN
204
E
ZN
ZN
10_555
TRANSCRIPTION
CADC, HELIX-TURN-HELIX MOTIF, TOXR-LIKE, DNA-BINDING TRANSCRIPTIONAL ACTIVATOR, CADBA PROMOTOR DNA, CYTOPLASMIC, TRANSCRIPTION
CADC_ECOLI
UNP
1
2
P23890
QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD
NDEDSPVYIATVPKRGYKLMVPVIWY
2
107
5JU7
2
107
P23890
A
1
5
110
1
expression tag
GLY
-2
5JU7
A
P23890
UNP
1
1
expression tag
ALA
-1
5JU7
A
P23890
UNP
2
1
expression tag
MET
0
5JU7
A
P23890
UNP
3
1
expression tag
ALA
1
5JU7
A
P23890
UNP
4
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
26
A
GLN
29
A
THR
28
A
THR
31
A
GLN
19
A
GLN
22
A
SER
21
A
SER
24
A
TRP
11
A
TRP
14
A
THR
14
A
THR
17
A
VAL
6
A
VAL
9
A
VAL
8
A
VAL
11
A
VAL
104
A
VAL
107
A
TRP
106
A
TRP
109
A
VAL
47
A
VAL
50
A
LEU
48
A
LEU
51
A
GLY
97
A
GLY
100
A
LEU
100
A
LEU
103
A
ILE
90
A
ILE
93
A
VAL
93
A
VAL
96
binding site for residue ZN A 201
A
ZN
201
Software
5
binding site for residue ZN A 202
A
ZN
202
Software
5
binding site for residue ZN A 203
A
ZN
203
Software
5
binding site for residue ZN A 204
A
ZN
204
Software
4
binding site for residue ZN A 205
A
ZN
205
Software
2
A
GLU
30
A
GLU
33
5
1_555
A
HIS
66
A
HIS
69
5
12_544
A
GLU
74
A
GLU
77
5
1_555
A
ZN
202
C
ZN
5
1_555
A
HOH
314
G
HOH
5
1_555
A
GLU
30
A
GLU
33
5
1_555
A
HIS
66
A
HIS
69
5
12_544
A
GLN
70
A
GLN
73
5
12_544
A
GLU
74
A
GLU
77
5
1_555
A
ZN
201
B
ZN
5
1_555
A
GLN
42
A
GLN
45
5
1_555
A
HIS
43
A
HIS
46
5
1_555
A
GLU
46
A
GLU
49
5
1_555
A
TYR
107
A
TYR
110
5
10_555
A
ZN
204
E
ZN
5
1_555
A
HIS
43
A
HIS
46
4
1_555
A
GLU
46
A
GLU
49
4
1_555
A
TYR
107
A
TYR
110
4
10_555
A
ZN
203
D
ZN
4
1_555
A
HIS
66
A
HIS
69
2
12_544
A
GLN
70
A
GLN
73
2
12_544
181
P 64 2 2