0.009602 0.005544 0.000000 0.000000 0.011088 0.000000 0.000000 0.000000 0.022727 0.00000 0.00000 0.00000 Janowski, R. Schlundt, A. Sattler, M. Niessing, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 104.140 104.140 44.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer UK Sci Rep 2045-2322 7 1051 1051 10.1038/s41598-017-01031-9 28432336 Structure-function analysis of the DNA-binding domain of a transmembrane transcriptional activator. 2017 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 PIXEL 2014-07-14 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.2536 1.0 0.99987 1.0 ID29 ESRF 0.99987 SYNCHROTRON ESRF BEAMLINE ID29 12586.452 Transcriptional activator CadC DNA BINDING DOMAIN OF CADC 1 man polymer 65.409 ZINC ION 5 syn non-polymer 18.015 water 28 nat water no no GAMAQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK SLKDNDEDSPVYIATVPKRGYKLMVPVIWY GAMAQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK SLKDNDEDSPVYIATVPKRGYKLMVPVIWY A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n K12 sample 1 110 cadC, b4133, JW4094 83333 Escherichia coli (strain K12) 469008 Escherichia coli BL21(DE3) Biological sequence PETTRX1A 1 2.74 55.05 VAPOR DIFFUSION, HANGING DROP 6.5 10 MM MES PH 6.5, 10 MM ZINC SULFATE, 27.5% PEG550 MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K 6.5 293 repository Initial release Database references 1 0 2017-04-26 1 1 2017-05-03 NMR RESONANCE ASSIGNMENTS OF CYTOPLASMIC CADC FROM E.COLI N RCSB Y PDBE 2016-05-10 REL REL ZN ZINC ION HOH water ZN 201 2 ZN ZN 201 A ZN 202 2 ZN ZN 202 A ZN 203 2 ZN ZN 203 A ZN 204 2 ZN ZN 204 A ZN 205 2 ZN ZN 205 A HOH 318 3 HOH HOH 301 A HOH 317 3 HOH HOH 302 A HOH 308 3 HOH HOH 303 A HOH 313 3 HOH HOH 304 A HOH 304 3 HOH HOH 305 A HOH 323 3 HOH HOH 306 A HOH 306 3 HOH HOH 307 A HOH 307 3 HOH HOH 308 A HOH 315 3 HOH HOH 309 A HOH 301 3 HOH HOH 310 A HOH 319 3 HOH HOH 311 A HOH 302 3 HOH HOH 312 A HOH 310 3 HOH HOH 313 A HOH 322 3 HOH HOH 314 A HOH 305 3 HOH HOH 315 A HOH 303 3 HOH HOH 316 A HOH 327 3 HOH HOH 317 A HOH 325 3 HOH HOH 318 A HOH 309 3 HOH HOH 319 A HOH 326 3 HOH HOH 320 A HOH 311 3 HOH HOH 321 A HOH 324 3 HOH HOH 322 A HOH 328 3 HOH HOH 323 A HOH 316 3 HOH HOH 324 A HOH 320 3 HOH HOH 325 A HOH 314 3 HOH HOH 326 A HOH 312 3 HOH HOH 327 A HOH 321 3 HOH HOH 328 A n 1 -2 A n 2 -1 A n 3 0 A ALA 1 n 4 ALA 1 A GLN 2 n 5 GLN 2 A GLN 3 n 6 GLN 3 A PRO 4 n 7 PRO 4 A VAL 5 n 8 VAL 5 A VAL 6 n 9 VAL 6 A ARG 7 n 10 ARG 7 A VAL 8 n 11 VAL 8 A GLY 9 n 12 GLY 9 A GLU 10 n 13 GLU 10 A TRP 11 n 14 TRP 11 A LEU 12 n 15 LEU 12 A VAL 13 n 16 VAL 13 A THR 14 n 17 THR 14 A PRO 15 n 18 PRO 15 A SER 16 n 19 SER 16 A ILE 17 n 20 ILE 17 A ASN 18 n 21 ASN 18 A GLN 19 n 22 GLN 19 A ILE 20 n 23 ILE 20 A SER 21 n 24 SER 21 A ARG 22 n 25 ARG 22 A ASN 23 n 26 ASN 23 A GLY 24 n 27 GLY 24 A ARG 25 n 28 ARG 25 A GLN 26 n 29 GLN 26 A LEU 27 n 30 LEU 27 A THR 28 n 31 THR 28 A LEU 29 n 32 LEU 29 A GLU 30 n 33 GLU 30 A PRO 31 n 34 PRO 31 A ARG 32 n 35 ARG 32 A LEU 33 n 36 LEU 33 A ILE 34 n 37 ILE 34 A ASP 35 n 38 ASP 35 A LEU 36 n 39 LEU 36 A LEU 37 n 40 LEU 37 A VAL 38 n 41 VAL 38 A PHE 39 n 42 PHE 39 A PHE 40 n 43 PHE 40 A ALA 41 n 44 ALA 41 A GLN 42 n 45 GLN 42 A HIS 43 n 46 HIS 43 A SER 44 n 47 SER 44 A GLY 45 n 48 GLY 45 A GLU 46 n 49 GLU 46 A VAL 47 n 50 VAL 47 A LEU 48 n 51 LEU 48 A SER 49 n 52 SER 49 A ARG 50 n 53 ARG 50 A ASP 51 n 54 ASP 51 A GLU 52 n 55 GLU 52 A LEU 53 n 56 LEU 53 A ILE 54 n 57 ILE 54 A ASP 55 n 58 ASP 55 A ASN 56 n 59 ASN 56 A VAL 57 n 60 VAL 57 A TRP 58 n 61 TRP 58 A LYS 59 n 62 LYS 59 A ARG 60 n 63 ARG 60 A SER 61 n 64 SER 61 A ILE 62 n 65 ILE 62 A VAL 63 n 66 VAL 63 A THR 64 n 67 THR 64 A ASN 65 n 68 ASN 65 A HIS 66 n 69 HIS 66 A VAL 67 n 70 VAL 67 A VAL 68 n 71 VAL 68 A THR 69 n 72 THR 69 A GLN 70 n 73 GLN 70 A SER 71 n 74 SER 71 A ILE 72 n 75 ILE 72 A SER 73 n 76 SER 73 A GLU 74 n 77 GLU 74 A LEU 75 n 78 LEU 75 A ARG 76 n 79 ARG 76 A LYS 77 n 80 LYS 77 A SER 78 n 81 SER 78 A LEU 79 n 82 LEU 79 A LYS 80 n 83 LYS 80 A ASP 81 n 84 ASP 81 A ASN 82 n 85 ASN 82 A ASP 83 n 86 ASP 83 A GLU 84 n 87 GLU 84 A ASP 85 n 88 ASP 85 A SER 86 n 89 SER 86 A PRO 87 n 90 PRO 87 A VAL 88 n 91 VAL 88 A TYR 89 n 92 TYR 89 A ILE 90 n 93 ILE 90 A ALA 91 n 94 ALA 91 A THR 92 n 95 THR 92 A VAL 93 n 96 VAL 93 A PRO 94 n 97 PRO 94 A LYS 95 n 98 LYS 95 A ARG 96 n 99 ARG 96 A GLY 97 n 100 GLY 97 A TYR 98 n 101 TYR 98 A LYS 99 n 102 LYS 99 A LEU 100 n 103 LEU 100 A MET 101 n 104 MET 101 A VAL 102 n 105 VAL 102 A PRO 103 n 106 PRO 103 A VAL 104 n 107 VAL 104 A ILE 105 n 108 ILE 105 A TRP 106 n 109 TRP 106 A TYR 107 n 110 TYR 107 A 2.7583 1.3380 0.9888 4.4493 0.6225 2.5561 -0.0464 0.0637 0.1226 0.0985 0.1600 0.2122 -0.0705 -0.1468 -0.1136 0.1864 -0.1519 0.0189 0.2169 0.0013 0.0260 refined 30.7633 -29.1747 0.8728 X-RAY DIFFRACTION A 1 A 107 X-RAY DIFFRACTION 1 software_defined_assembly PISA 1 monomeric 440 -119 6590 A GLU 30 A OE1 GLU 33 1_555 A ZN 202 C ZN ZN 1_555 A GLU 74 A OE2 GLU 77 1_555 76.0 A GLU 30 A OE1 GLU 33 1_555 A ZN 202 C ZN ZN 1_555 A HIS 66 A NE2 HIS 69 1_555 136.1 A GLU 74 A OE2 GLU 77 1_555 A ZN 202 C ZN ZN 1_555 A HIS 66 A NE2 HIS 69 1_555 83.1 A GLU 30 A OE2 GLU 33 1_555 A ZN 201 B ZN ZN 1_555 A GLU 74 A OE1 GLU 77 1_555 119.9 A GLU 30 A OE2 GLU 33 1_555 A ZN 201 B ZN ZN 1_555 A HOH 314 G O HOH 1_555 98.3 A GLU 74 A OE1 GLU 77 1_555 A ZN 201 B ZN ZN 1_555 A HOH 314 G O HOH 1_555 132.3 A GLU 30 A OE2 GLU 33 1_555 A ZN 201 B ZN ZN 1_555 A HIS 66 A NE2 HIS 69 1_555 163.9 A GLU 74 A OE1 GLU 77 1_555 A ZN 201 B ZN ZN 1_555 A HIS 66 A NE2 HIS 69 1_555 65.3 A HOH 314 G O HOH 1_555 A ZN 201 B ZN ZN 1_555 A HIS 66 A NE2 HIS 69 1_555 86.1 A HIS 43 A ND1 HIS 46 1_555 A ZN 204 E ZN ZN 1_555 A GLU 46 A OE1 GLU 49 1_555 116.7 A HIS 43 A ND1 HIS 46 1_555 A ZN 204 E ZN ZN 1_555 A TYR 107 A O TYR 110 1_555 27.3 A GLU 46 A OE1 GLU 49 1_555 A ZN 204 E ZN ZN 1_555 A TYR 107 A O TYR 110 1_555 103.1 A HIS 43 A ND1 HIS 46 1_555 A ZN 204 E ZN ZN 1_555 A TYR 107 A OXT TYR 110 1_555 23.5 A GLU 46 A OE1 GLU 49 1_555 A ZN 204 E ZN ZN 1_555 A TYR 107 A OXT TYR 110 1_555 103.6 A TYR 107 A O TYR 110 1_555 A ZN 204 E ZN ZN 1_555 A TYR 107 A OXT TYR 110 1_555 4.3 A GLU 46 A OE2 GLU 49 1_555 A ZN 203 D ZN ZN 1_555 A TYR 107 A O TYR 110 1_555 153.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 27 A O LEU 30 A N ILE 20 A N ILE 23 A O GLN 19 A O GLN 22 A N THR 14 A N THR 17 A O TRP 11 A O TRP 14 A N VAL 8 A N VAL 11 A N ARG 7 A N ARG 10 A O ILE 105 A O ILE 108 A N LEU 48 A N LEU 51 A O TYR 98 A O TYR 101 A O LYS 99 A O LYS 102 A N ALA 91 A N ALA 94 1 A HOH 324 G HOH 1 A HOH 328 G HOH 1 A GLY -2 A GLY 1 1 Y 1 A ALA -1 A ALA 2 1 Y 1 A MET 0 A MET 3 1 Y 1 A LYS 59 -37.87 129.59 90.67 0.70000 0.35000 -0.00000 0.70000 -0.00000 -2.28000 0.975 0.966 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.223 0.182 0.185 2.05 90.00 460 8762 5.000 99.6 12.343 0.140 RANDOM 1 THROUGHOUT 0.000 SAD 0.160 0.149 0.80 0.80 1.20 2.05 90.00 28 903 5 0 870 0.020 0.019 888 0.001 0.020 876 2.169 1.960 1210 0.971 3.000 2007 7.832 5.000 106 41.937 23.659 41 19.248 15.000 158 25.563 15.000 8 0.121 0.200 141 0.012 0.021 986 0.001 0.020 202 4.459 4.592 427 4.460 4.589 426 5.663 6.865 532 5.661 6.866 533 5.464 5.060 461 5.444 5.058 461 7.602 7.392 678 9.165 36.655 972 9.168 36.656 970 0.3230 0.2790 2.10 35 629 20 99.85 48.88 2.050 90.000 5JU7 9222 0.000 0.03800 1 35.7600 14.6 99.6 0.59300 2.05 2.10 4.090 1 99.9 data reduction XDS data scaling SCALA phasing Auto-Rickshaw refinement REFMAC 5.8.0073 phasing Auto-Rickshaw phasing Auto-Rickshaw phasing Auto-Rickshaw phasing Auto-Rickshaw N Transcriptional activator CadC DNA BINDING DOMAIN OF E.COLI CADC 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N A PRO 15 A PRO 18 HELX_P A ILE 17 A ILE 20 5 AA1 3 A GLU 30 A GLU 33 HELX_P A HIS 43 A HIS 46 1 AA2 14 A SER 49 A SER 52 HELX_P A TRP 58 A TRP 61 1 AA3 10 A THR 64 A THR 67 HELX_P A ASP 81 A ASP 84 1 AA4 18 metalc 2.255 A GLU 30 A OE1 GLU 33 1_555 A ZN 202 C ZN ZN 1_555 metalc 2.449 A GLU 30 A OE2 GLU 33 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.429 A HIS 43 A ND1 HIS 46 1_555 A ZN 204 E ZN ZN 1_555 metalc 2.224 A GLU 46 A OE1 GLU 49 1_555 A ZN 204 E ZN ZN 1_555 metalc 2.685 A GLU 46 A OE2 GLU 49 1_555 A ZN 203 D ZN ZN 1_555 metalc 2.395 A GLU 74 A OE1 GLU 77 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.299 A GLU 74 A OE2 GLU 77 1_555 A ZN 202 C ZN ZN 1_555 metalc 2.397 A ZN 201 B ZN ZN 1_555 A HOH 314 G O HOH 1_555 metalc 2.340 A HIS 66 A NE2 HIS 69 1_555 A ZN 202 C ZN ZN 12_544 metalc 2.326 A HIS 66 A NE2 HIS 69 1_555 A ZN 201 B ZN ZN 12_544 metalc 2.485 A TYR 107 A O TYR 110 1_555 A ZN 203 D ZN ZN 10_555 metalc 2.455 A TYR 107 A O TYR 110 1_555 A ZN 204 E ZN ZN 10_555 metalc 2.556 A TYR 107 A OXT TYR 110 1_555 A ZN 204 E ZN ZN 10_555 TRANSCRIPTION CADC, HELIX-TURN-HELIX MOTIF, TOXR-LIKE, DNA-BINDING TRANSCRIPTIONAL ACTIVATOR, CADBA PROMOTOR DNA, CYTOPLASMIC, TRANSCRIPTION CADC_ECOLI UNP 1 2 P23890 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD NDEDSPVYIATVPKRGYKLMVPVIWY 2 107 5JU7 2 107 P23890 A 1 5 110 1 expression tag GLY -2 5JU7 A P23890 UNP 1 1 expression tag ALA -1 5JU7 A P23890 UNP 2 1 expression tag MET 0 5JU7 A P23890 UNP 3 1 expression tag ALA 1 5JU7 A P23890 UNP 4 5 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 26 A GLN 29 A THR 28 A THR 31 A GLN 19 A GLN 22 A SER 21 A SER 24 A TRP 11 A TRP 14 A THR 14 A THR 17 A VAL 6 A VAL 9 A VAL 8 A VAL 11 A VAL 104 A VAL 107 A TRP 106 A TRP 109 A VAL 47 A VAL 50 A LEU 48 A LEU 51 A GLY 97 A GLY 100 A LEU 100 A LEU 103 A ILE 90 A ILE 93 A VAL 93 A VAL 96 binding site for residue ZN A 201 A ZN 201 Software 5 binding site for residue ZN A 202 A ZN 202 Software 5 binding site for residue ZN A 203 A ZN 203 Software 5 binding site for residue ZN A 204 A ZN 204 Software 4 binding site for residue ZN A 205 A ZN 205 Software 2 A GLU 30 A GLU 33 5 1_555 A HIS 66 A HIS 69 5 12_544 A GLU 74 A GLU 77 5 1_555 A ZN 202 C ZN 5 1_555 A HOH 314 G HOH 5 1_555 A GLU 30 A GLU 33 5 1_555 A HIS 66 A HIS 69 5 12_544 A GLN 70 A GLN 73 5 12_544 A GLU 74 A GLU 77 5 1_555 A ZN 201 B ZN 5 1_555 A GLN 42 A GLN 45 5 1_555 A HIS 43 A HIS 46 5 1_555 A GLU 46 A GLU 49 5 1_555 A TYR 107 A TYR 110 5 10_555 A ZN 204 E ZN 5 1_555 A HIS 43 A HIS 46 4 1_555 A GLU 46 A GLU 49 4 1_555 A TYR 107 A TYR 110 4 10_555 A ZN 203 D ZN 4 1_555 A HIS 66 A HIS 69 2 12_544 A GLN 70 A GLN 73 2 12_544 181 P 64 2 2