0.016603
0.009586
0.000000
0.000000
0.019172
0.000000
0.000000
0.000000
0.010323
0.000000
0.000000
0.000000
Lee, H.
Fischer, M.
Shoichet, B.K.
Liu, S.-Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
60.230
60.230
96.870
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H6
78.112
BENZENE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
Y
74
N
C
Y
75
N
C
Y
76
N
C
Y
77
N
C
Y
78
N
C
Y
79
N
C
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
N
N
87
R
C
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
S
N
92
N
O
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
C
N
107
N
O
N
108
N
N
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
S
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
N
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
S
C
N
151
N
C
N
152
N
O
N
153
N
C
Y
154
N
C
Y
155
N
N
Y
156
N
C
Y
157
N
C
Y
158
N
N
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
S
C
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
S
N
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
O
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
R
C
N
321
N
O
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
N
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
Y
70
N
doub
Y
71
N
sing
N
72
N
sing
Y
73
N
sing
N
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
N
78
N
sing
Y
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
sing
Y
153
N
doub
Y
154
N
doub
N
155
N
sing
Y
156
N
sing
N
157
N
sing
Y
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
doub
Y
261
N
sing
Y
262
N
sing
N
263
N
sing
Y
264
N
doub
N
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
Y
329
N
doub
Y
330
N
sing
Y
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
US
J.Am.Chem.Soc.
JACSAT
1520-5126
138
12021
12024
10.1021/jacs.6b06566
27603116
Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.
2016
10.2210/pdb5jwt/pdb
pdb_00005jwt
100
1
CCD
2015-06-03
ADSC QUANTUM 315r
KHOZU Double flat crystal
SINGLE WAVELENGTH
M
x-ray
1
1.11587
1.0
8.3.1
ALS
1.11587
SYNCHROTRON
ALS BEAMLINE 8.3.1
18646.316
Endolysin
3.2.1.17
1
man
polymer
78.112
BENZENE
1
syn
non-polymer
18.015
water
299
nat
water
Lysis protein,Lysozyme,Muramidase
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPDLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCAAINQVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPDRAKRVITTFRTGTWDA
YKNL
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPDLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCAAINQVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPDRAKRVITTFRTGTWDA
YKNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
164
10665
Enterobacteria phage T4
31343
562
Escherichia coli
RR1
Biological sequence
1
2.77
55.65
VAPOR DIFFUSION, HANGING DROP
6.9
2.2 M sodium/potassium phosphate, pH 6.9, 50 mM 2-mercaptoethanol, 50 mM 2-hydroxyethyl disulfide
277.15
database_2
pdbx_audit_support
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Database references
Author supporting evidence
Database references
Derived calculations
Data collection
Refinement description
1
0
2016-09-21
1
1
2016-09-28
1
2
2022-04-13
1
3
2023-09-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_audit_support.funding_organization
_pdbx_struct_oper_list.symmetry_operation
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
5001989
N
RCSB
Y
RCSB
2016-05-12
REL
REL
1
A
O
HOH
590
6.04
1
A
O
HOH
591
6.07
1
A
O
HOH
592
6.08
1
A
O
HOH
593
6.17
1
A
O
HOH
594
6.21
1
A
O
HOH
595
6.50
1
A
O
HOH
596
7.53
1
A
O
HOH
597
7.59
1
A
O
HOH
598
10.84
1
A
O
HOH
599
11.08
BNZ
BENZENE
HOH
water
1LGU
PDB
experimental model
BNZ
1
2
BNZ
BNZ
201
A
HOH
124
3
HOH
HOH
301
A
HOH
167
3
HOH
HOH
302
A
HOH
80
3
HOH
HOH
303
A
HOH
219
3
HOH
HOH
304
A
HOH
13
3
HOH
HOH
305
A
HOH
201
3
HOH
HOH
306
A
HOH
83
3
HOH
HOH
307
A
HOH
206
3
HOH
HOH
308
A
HOH
296
3
HOH
HOH
309
A
HOH
113
3
HOH
HOH
310
A
HOH
286
3
HOH
HOH
311
A
HOH
228
3
HOH
HOH
312
A
HOH
251
3
HOH
HOH
313
A
HOH
174
3
HOH
HOH
314
A
HOH
135
3
HOH
HOH
315
A
HOH
329
3
HOH
HOH
316
A
HOH
183
3
HOH
HOH
317
A
HOH
168
3
HOH
HOH
318
A
HOH
218
3
HOH
HOH
319
A
HOH
94
3
HOH
HOH
320
A
HOH
90
3
HOH
HOH
321
A
HOH
22
3
HOH
HOH
322
A
HOH
86
3
HOH
HOH
323
A
HOH
73
3
HOH
HOH
324
A
HOH
48
3
HOH
HOH
325
A
HOH
145
3
HOH
HOH
326
A
HOH
70
3
HOH
HOH
327
A
HOH
26
3
HOH
HOH
328
A
HOH
234
3
HOH
HOH
329
A
HOH
10
3
HOH
HOH
330
A
HOH
225
3
HOH
HOH
331
A
HOH
205
3
HOH
HOH
332
A
HOH
43
3
HOH
HOH
333
A
HOH
270
3
HOH
HOH
334
A
HOH
227
3
HOH
HOH
335
A
HOH
63
3
HOH
HOH
336
A
HOH
121
3
HOH
HOH
337
A
HOH
74
3
HOH
HOH
338
A
HOH
66
3
HOH
HOH
339
A
HOH
260
3
HOH
HOH
340
A
HOH
17
3
HOH
HOH
341
A
HOH
163
3
HOH
HOH
342
A
HOH
194
3
HOH
HOH
343
A
HOH
36
3
HOH
HOH
344
A
HOH
125
3
HOH
HOH
345
A
HOH
212
3
HOH
HOH
346
A
HOH
77
3
HOH
HOH
347
A
HOH
278
3
HOH
HOH
348
A
HOH
139
3
HOH
HOH
349
A
HOH
19
3
HOH
HOH
350
A
HOH
5
3
HOH
HOH
351
A
HOH
107
3
HOH
HOH
352
A
HOH
267
3
HOH
HOH
353
A
HOH
84
3
HOH
HOH
354
A
HOH
143
3
HOH
HOH
355
A
HOH
50
3
HOH
HOH
356
A
HOH
106
3
HOH
HOH
357
A
HOH
298
3
HOH
HOH
358
A
HOH
88
3
HOH
HOH
359
A
HOH
58
3
HOH
HOH
360
A
HOH
319
3
HOH
HOH
361
A
HOH
39
3
HOH
HOH
362
A
HOH
249
3
HOH
HOH
363
A
HOH
38
3
HOH
HOH
364
A
HOH
55
3
HOH
HOH
365
A
HOH
359
3
HOH
HOH
366
A
HOH
32
3
HOH
HOH
367
A
HOH
69
3
HOH
HOH
368
A
HOH
87
3
HOH
HOH
369
A
HOH
52
3
HOH
HOH
370
A
HOH
273
3
HOH
HOH
371
A
HOH
41
3
HOH
HOH
372
A
HOH
45
3
HOH
HOH
373
A
HOH
114
3
HOH
HOH
374
A
HOH
173
3
HOH
HOH
375
A
HOH
3
3
HOH
HOH
376
A
HOH
8
3
HOH
HOH
377
A
HOH
35
3
HOH
HOH
378
A
HOH
64
3
HOH
HOH
379
A
HOH
126
3
HOH
HOH
380
A
HOH
79
3
HOH
HOH
381
A
HOH
9
3
HOH
HOH
382
A
HOH
175
3
HOH
HOH
383
A
HOH
161
3
HOH
HOH
384
A
HOH
14
3
HOH
HOH
385
A
HOH
169
3
HOH
HOH
386
A
HOH
149
3
HOH
HOH
387
A
HOH
320
3
HOH
HOH
388
A
HOH
34
3
HOH
HOH
389
A
HOH
153
3
HOH
HOH
390
A
HOH
330
3
HOH
HOH
391
A
HOH
128
3
HOH
HOH
392
A
HOH
137
3
HOH
HOH
393
A
HOH
11
3
HOH
HOH
394
A
HOH
23
3
HOH
HOH
395
A
HOH
62
3
HOH
HOH
396
A
HOH
144
3
HOH
HOH
397
A
HOH
238
3
HOH
HOH
398
A
HOH
157
3
HOH
HOH
399
A
HOH
159
3
HOH
HOH
400
A
HOH
20
3
HOH
HOH
401
A
HOH
100
3
HOH
HOH
402
A
HOH
98
3
HOH
HOH
403
A
HOH
28
3
HOH
HOH
404
A
HOH
47
3
HOH
HOH
405
A
HOH
27
3
HOH
HOH
406
A
HOH
295
3
HOH
HOH
407
A
HOH
170
3
HOH
HOH
408
A
HOH
165
3
HOH
HOH
409
A
HOH
18
3
HOH
HOH
410
A
HOH
16
3
HOH
HOH
411
A
HOH
85
3
HOH
HOH
412
A
HOH
25
3
HOH
HOH
413
A
HOH
30
3
HOH
HOH
414
A
HOH
358
3
HOH
HOH
415
A
HOH
185
3
HOH
HOH
416
A
HOH
57
3
HOH
HOH
417
A
HOH
82
3
HOH
HOH
418
A
HOH
101
3
HOH
HOH
419
A
HOH
118
3
HOH
HOH
420
A
HOH
229
3
HOH
HOH
421
A
HOH
6
3
HOH
HOH
422
A
HOH
7
3
HOH
HOH
423
A
HOH
92
3
HOH
HOH
424
A
HOH
148
3
HOH
HOH
425
A
HOH
208
3
HOH
HOH
426
A
HOH
226
3
HOH
HOH
427
A
HOH
56
3
HOH
HOH
428
A
HOH
360
3
HOH
HOH
429
A
HOH
179
3
HOH
HOH
430
A
HOH
268
3
HOH
HOH
431
A
HOH
198
3
HOH
HOH
432
A
HOH
187
3
HOH
HOH
433
A
HOH
91
3
HOH
HOH
434
A
HOH
99
3
HOH
HOH
435
A
HOH
40
3
HOH
HOH
436
A
HOH
266
3
HOH
HOH
437
A
HOH
29
3
HOH
HOH
438
A
HOH
42
3
HOH
HOH
439
A
HOH
138
3
HOH
HOH
440
A
HOH
24
3
HOH
HOH
441
A
HOH
239
3
HOH
HOH
442
A
HOH
15
3
HOH
HOH
443
A
HOH
315
3
HOH
HOH
444
A
HOH
331
3
HOH
HOH
445
A
HOH
31
3
HOH
HOH
446
A
HOH
33
3
HOH
HOH
447
A
HOH
302
3
HOH
HOH
448
A
HOH
272
3
HOH
HOH
449
A
HOH
240
3
HOH
HOH
450
A
HOH
285
3
HOH
HOH
451
A
HOH
21
3
HOH
HOH
452
A
HOH
108
3
HOH
HOH
453
A
HOH
120
3
HOH
HOH
454
A
HOH
67
3
HOH
HOH
455
A
HOH
65
3
HOH
HOH
456
A
HOH
156
3
HOH
HOH
457
A
HOH
326
3
HOH
HOH
458
A
HOH
53
3
HOH
HOH
459
A
HOH
46
3
HOH
HOH
460
A
HOH
339
3
HOH
HOH
461
A
HOH
75
3
HOH
HOH
462
A
HOH
71
3
HOH
HOH
463
A
HOH
324
3
HOH
HOH
464
A
HOH
146
3
HOH
HOH
465
A
HOH
202
3
HOH
HOH
466
A
HOH
123
3
HOH
HOH
467
A
HOH
60
3
HOH
HOH
468
A
HOH
255
3
HOH
HOH
469
A
HOH
76
3
HOH
HOH
470
A
HOH
328
3
HOH
HOH
471
A
HOH
131
3
HOH
HOH
472
A
HOH
338
3
HOH
HOH
473
A
HOH
72
3
HOH
HOH
474
A
HOH
105
3
HOH
HOH
475
A
HOH
316
3
HOH
HOH
476
A
HOH
68
3
HOH
HOH
477
A
HOH
342
3
HOH
HOH
478
A
HOH
214
3
HOH
HOH
479
A
HOH
116
3
HOH
HOH
480
A
HOH
199
3
HOH
HOH
481
A
HOH
262
3
HOH
HOH
482
A
HOH
130
3
HOH
HOH
483
A
HOH
96
3
HOH
HOH
484
A
HOH
210
3
HOH
HOH
485
A
HOH
2
3
HOH
HOH
486
A
HOH
103
3
HOH
HOH
487
A
HOH
341
3
HOH
HOH
488
A
HOH
293
3
HOH
HOH
489
A
HOH
166
3
HOH
HOH
490
A
HOH
147
3
HOH
HOH
491
A
HOH
188
3
HOH
HOH
492
A
HOH
306
3
HOH
HOH
493
A
HOH
236
3
HOH
HOH
494
A
HOH
184
3
HOH
HOH
495
A
HOH
115
3
HOH
HOH
496
A
HOH
254
3
HOH
HOH
497
A
HOH
134
3
HOH
HOH
498
A
HOH
263
3
HOH
HOH
499
A
HOH
190
3
HOH
HOH
500
A
HOH
95
3
HOH
HOH
501
A
HOH
136
3
HOH
HOH
502
A
HOH
151
3
HOH
HOH
503
A
HOH
196
3
HOH
HOH
504
A
HOH
180
3
HOH
HOH
505
A
HOH
318
3
HOH
HOH
506
A
HOH
54
3
HOH
HOH
507
A
HOH
257
3
HOH
HOH
508
A
HOH
150
3
HOH
HOH
509
A
HOH
235
3
HOH
HOH
510
A
HOH
337
3
HOH
HOH
511
A
HOH
297
3
HOH
HOH
512
A
HOH
109
3
HOH
HOH
513
A
HOH
132
3
HOH
HOH
514
A
HOH
340
3
HOH
HOH
515
A
HOH
274
3
HOH
HOH
516
A
HOH
164
3
HOH
HOH
517
A
HOH
155
3
HOH
HOH
518
A
HOH
279
3
HOH
HOH
519
A
HOH
220
3
HOH
HOH
520
A
HOH
250
3
HOH
HOH
521
A
HOH
357
3
HOH
HOH
522
A
HOH
223
3
HOH
HOH
523
A
HOH
158
3
HOH
HOH
524
A
HOH
104
3
HOH
HOH
525
A
HOH
117
3
HOH
HOH
526
A
HOH
133
3
HOH
HOH
527
A
HOH
275
3
HOH
HOH
528
A
HOH
261
3
HOH
HOH
529
A
HOH
189
3
HOH
HOH
530
A
HOH
301
3
HOH
HOH
531
A
HOH
304
3
HOH
HOH
532
A
HOH
325
3
HOH
HOH
533
A
HOH
160
3
HOH
HOH
534
A
HOH
4
3
HOH
HOH
535
A
HOH
89
3
HOH
HOH
536
A
HOH
336
3
HOH
HOH
537
A
HOH
172
3
HOH
HOH
538
A
HOH
197
3
HOH
HOH
539
A
HOH
288
3
HOH
HOH
540
A
HOH
110
3
HOH
HOH
541
A
HOH
97
3
HOH
HOH
542
A
HOH
119
3
HOH
HOH
543
A
HOH
177
3
HOH
HOH
544
A
HOH
259
3
HOH
HOH
545
A
HOH
127
3
HOH
HOH
546
A
HOH
243
3
HOH
HOH
547
A
HOH
309
3
HOH
HOH
548
A
HOH
112
3
HOH
HOH
549
A
HOH
221
3
HOH
HOH
550
A
HOH
317
3
HOH
HOH
551
A
HOH
343
3
HOH
HOH
552
A
HOH
258
3
HOH
HOH
553
A
HOH
61
3
HOH
HOH
554
A
HOH
222
3
HOH
HOH
555
A
HOH
78
3
HOH
HOH
556
A
HOH
59
3
HOH
HOH
557
A
HOH
154
3
HOH
HOH
558
A
HOH
129
3
HOH
HOH
559
A
HOH
49
3
HOH
HOH
560
A
HOH
265
3
HOH
HOH
561
A
HOH
140
3
HOH
HOH
562
A
HOH
122
3
HOH
HOH
563
A
HOH
299
3
HOH
HOH
564
A
HOH
252
3
HOH
HOH
565
A
HOH
44
3
HOH
HOH
566
A
HOH
193
3
HOH
HOH
567
A
HOH
171
3
HOH
HOH
568
A
HOH
178
3
HOH
HOH
569
A
HOH
256
3
HOH
HOH
570
A
HOH
81
3
HOH
HOH
571
A
HOH
142
3
HOH
HOH
572
A
HOH
264
3
HOH
HOH
573
A
HOH
162
3
HOH
HOH
574
A
HOH
186
3
HOH
HOH
575
A
HOH
37
3
HOH
HOH
576
A
HOH
12
3
HOH
HOH
577
A
HOH
237
3
HOH
HOH
578
A
HOH
323
3
HOH
HOH
579
A
HOH
322
3
HOH
HOH
580
A
HOH
209
3
HOH
HOH
581
A
HOH
213
3
HOH
HOH
582
A
HOH
327
3
HOH
HOH
583
A
HOH
93
3
HOH
HOH
584
A
HOH
182
3
HOH
HOH
585
A
HOH
176
3
HOH
HOH
586
A
HOH
348
3
HOH
HOH
587
A
HOH
334
3
HOH
HOH
588
A
HOH
345
3
HOH
HOH
589
A
HOH
224
3
HOH
HOH
590
A
HOH
291
3
HOH
HOH
591
A
HOH
321
3
HOH
HOH
592
A
HOH
216
3
HOH
HOH
593
A
HOH
333
3
HOH
HOH
594
A
HOH
314
3
HOH
HOH
595
A
HOH
305
3
HOH
HOH
596
A
HOH
283
3
HOH
HOH
597
A
HOH
344
3
HOH
HOH
598
A
HOH
349
3
HOH
HOH
599
A
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
ASP
38
n
38
ASP
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
CYS
54
n
54
CYS
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
CYS
97
n
97
CYS
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
ILE
100
n
100
ILE
100
A
ASN
101
n
101
ASN
101
A
GLN
102
n
102
GLN
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
MET
106
n
106
MET
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
VAL
111
n
111
VAL
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
MET
120
n
120
MET
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
ASP
127
n
127
ASP
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
ASP
144
n
144
ASP
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
PHE
153
n
153
PHE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
n
162
162
A
n
163
163
A
n
164
164
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
18
A
N
TYR
18
A
O
THR
26
A
O
THR
26
A
N
ILE
27
A
N
ILE
27
A
O
HIS
31
A
O
HIS
31
1
A
LYS
162
A
LYS
162
1
Y
1
A
ASN
163
A
ASN
163
1
Y
1
A
LEU
164
A
LEU
164
1
Y
1
A
A
O
O
HOH
HOH
506
578
2.06
1
A
A
O
O
HOH
HOH
520
555
2.11
1
A
A
O
O
HOH
HOH
364
387
2.13
1
A
A
O
O
HOH
HOH
384
432
2.17
1
A
A
O
O
HOH
HOH
371
519
2.17
1
A
A
O
O
HOH
HOH
581
591
2.17
1
A
A
O
O
HOH
HOH
353
482
2.18
1
A
A
O
O
HOH
HOH
485
528
2.19
1
A
ILE
29
-104.90
76.32
56.050
18.5688
8.690
0.2429
0.2201
0.2213
1.4100
45.9260
1997
39665
5.0300
99.4900
0.1800
1
FREE R-VALUE
1.350
MOLECULAR REPLACEMENT
28.5800
0.9000
1.1100
1LGU
1.4100
45.9260
299
1588
13.31
29.15
6
0
1283
161
0.005
1402
0.788
1891
0.066
205
0.005
248
12.899
529
0.3764
0.3315
1.4452
135
2637
99.0000
0.3368
0.2943
1.4843
133
2686
100.0000
0.3629
0.2950
1.5280
154
2634
100.0000
0.2980
0.2862
1.5773
139
2668
100.0000
0.2907
0.2769
1.6337
134
2707
100.0000
0.2905
0.2691
1.6991
135
2663
100.0000
0.2737
0.2548
1.7765
152
2689
100.0000
0.3258
0.2605
1.8701
151
2664
100.0000
0.2679
0.2358
1.9873
131
2685
100.0000
0.2566
0.2150
2.1407
141
2706
100.0000
0.2236
0.2007
2.3561
164
2682
100.0000
0.2311
0.2135
2.6970
142
2752
100.0000
0.2186
0.1935
3.3978
155
2739
100.0000
0.1844
0.1840
45.9260
131
2756
95.0000
1.41
45.926
5JWT
39667
0.058
1
2.9
8
99.6
0.321
1.41
1.46
1
99.6
refinement
PHENIX
1.10.1_2155
data extraction
PDB_EXTRACT
3.20
data reduction
d*TREK
9.9.9.10L
model building
PHENIX
phasing
PHENIX
data scaling
d*TREK
9.9.9.10L
N
T4 Lysozyme L99A/M102Q with Benzene Bound
1
N
N
2
N
N
3
N
N
A
ASN
2
A
ASN
2
HELX_P
A
GLY
12
A
GLY
12
1
AA1
11
A
ASP
38
A
ASP
38
HELX_P
A
GLY
51
A
GLY
51
1
AA2
14
A
THR
59
A
THR
59
HELX_P
A
ASN
81
A
ASN
81
1
AA3
23
A
LYS
83
A
LYS
83
HELX_P
A
LEU
91
A
LEU
91
1
AA4
9
A
ASP
92
A
ASP
92
HELX_P
A
GLY
107
A
GLY
107
1
AA5
16
A
PHE
114
A
PHE
114
HELX_P
A
GLN
123
A
GLN
123
1
AA6
10
A
ARG
125
A
ARG
125
HELX_P
A
LYS
135
A
LYS
135
1
AA7
11
A
SER
136
A
SER
136
HELX_P
A
THR
142
A
THR
142
1
AA8
7
A
THR
142
A
THR
142
HELX_P
A
GLY
156
A
GLY
156
1
AA9
15
HYDROLASE
Phage lysozyme Azaborine, HYDROLASE
ENLYS_BPT4
UNP
1
1
P00720
MNIFEMLRIDERLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSIWYNQTPNRAKRVITTFRTGTWDA
YKNL
1
164
5JWT
1
164
P00720
A
1
1
164
1
ARG
engineered mutation
GLY
12
5JWT
A
P00720
UNP
12
12
1
SER
engineered mutation
ASP
38
5JWT
A
P00720
UNP
38
38
1
LEU
engineered mutation
ALA
99
5JWT
A
P00720
UNP
99
99
1
MET
engineered mutation
GLN
102
5JWT
A
P00720
UNP
102
102
1
ILE
engineered mutation
ARG
137
5JWT
A
P00720
UNP
137
137
1
ASN
engineered mutation
ASP
144
5JWT
A
P00720
UNP
144
144
3
anti-parallel
anti-parallel
A
ARG
14
A
ARG
14
A
LYS
19
A
LYS
19
A
TYR
25
A
TYR
25
A
GLY
28
A
GLY
28
A
HIS
31
A
HIS
31
A
LEU
32
A
LEU
32
binding site for residue BNZ A 201
A
BNZ
201
Software
4
A
ALA
99
A
ALA
99
4
1_555
A
GLN
102
A
GLN
102
4
1_555
A
VAL
111
A
VAL
111
4
1_555
A
LEU
118
A
LEU
118
4
1_555
154
P 32 2 1